Query 005000
Match_columns 720
No_of_seqs 833 out of 5032
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 16:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-135 2E-139 1172.8 79.4 697 18-718 88-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-124 8E-129 1058.6 70.3 613 77-720 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.2E-73 4.7E-78 660.1 53.4 666 20-715 58-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.4E-67 1.2E-71 593.8 59.0 508 45-587 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-63 3.8E-68 565.2 56.2 491 26-547 383-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.3E-64 1.4E-68 567.4 47.9 431 17-482 124-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-31 6.9E-36 314.3 59.6 550 20-582 302-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-30 2.2E-35 310.0 60.5 542 26-580 274-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.9E-33 4.1E-38 234.2 7.0 106 587-710 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 9.9E-23 2.1E-27 242.7 54.7 541 27-581 42-701 (1157)
11 PRK11447 cellulose synthase su 99.9 5E-22 1.1E-26 236.6 58.5 544 22-579 121-739 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.1E-19 2.4E-24 206.7 53.0 499 61-581 56-707 (987)
13 PRK09782 bacteriophage N4 rece 99.9 4.9E-19 1.1E-23 201.5 55.0 538 27-582 58-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4E-20 8.7E-25 186.3 38.3 447 85-575 53-514 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1.6E-18 3.5E-23 174.8 35.0 357 216-581 116-486 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-17 4.2E-22 185.4 44.5 416 156-580 133-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 2.9E-18 6.2E-23 182.4 30.6 268 315-587 71-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.3E-22 178.0 31.2 290 227-545 46-346 (389)
19 TIGR00990 3a0801s09 mitochondr 99.8 7.5E-16 1.6E-20 172.7 44.7 414 121-551 133-576 (615)
20 PRK10049 pgaA outer membrane p 99.8 4.7E-16 1E-20 177.5 42.3 402 148-580 13-456 (765)
21 PRK10049 pgaA outer membrane p 99.8 5.5E-16 1.2E-20 176.9 42.0 416 113-554 13-464 (765)
22 PRK15174 Vi polysaccharide exp 99.8 1.5E-15 3.3E-20 169.6 41.6 353 162-551 17-386 (656)
23 KOG2002 TPR-containing nuclear 99.8 8.8E-15 1.9E-19 156.2 40.4 509 61-580 176-745 (1018)
24 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.5E-20 170.5 35.5 285 290-581 84-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 1.7E-14 3.6E-19 161.4 43.8 432 125-579 44-512 (822)
26 PRK14574 hmsH outer membrane p 99.8 3.2E-14 7E-19 159.2 45.2 444 83-553 38-520 (822)
27 KOG2002 TPR-containing nuclear 99.7 5.6E-14 1.2E-18 150.2 40.3 506 65-580 146-709 (1018)
28 KOG2003 TPR repeat-containing 99.7 3.1E-13 6.7E-18 132.2 34.8 443 117-566 200-709 (840)
29 KOG4422 Uncharacterized conser 99.7 5.3E-13 1.2E-17 129.9 35.3 427 80-547 116-591 (625)
30 KOG4422 Uncharacterized conser 99.7 2.9E-12 6.3E-17 124.8 38.3 426 16-511 119-587 (625)
31 KOG2076 RNA polymerase III tra 99.6 3.6E-11 7.7E-16 128.3 45.9 342 23-367 149-545 (895)
32 KOG0495 HAT repeat protein [RN 99.6 6.8E-11 1.5E-15 121.3 45.2 477 101-597 367-895 (913)
33 KOG2003 TPR repeat-containing 99.6 5.4E-13 1.2E-17 130.5 24.6 467 19-509 207-717 (840)
34 KOG2076 RNA polymerase III tra 99.6 8.3E-12 1.8E-16 133.0 32.7 328 229-590 152-522 (895)
35 PF13429 TPR_15: Tetratricopep 99.5 1.7E-14 3.7E-19 145.2 9.6 255 319-578 14-275 (280)
36 KOG0547 Translocase of outer m 99.5 3.9E-11 8.5E-16 119.2 31.7 189 386-579 363-565 (606)
37 KOG0495 HAT repeat protein [RN 99.5 1.5E-09 3.2E-14 111.7 42.0 492 45-558 377-892 (913)
38 KOG4318 Bicoid mRNA stability 99.5 2.7E-10 5.9E-15 120.9 36.6 214 34-266 11-286 (1088)
39 KOG1173 Anaphase-promoting com 99.5 2.9E-10 6.3E-15 115.4 35.0 261 312-578 243-516 (611)
40 KOG1915 Cell cycle control pro 99.5 3.2E-09 7E-14 105.3 40.4 491 82-579 75-624 (677)
41 KOG1126 DNA-binding cell divis 99.5 6.3E-12 1.4E-16 130.0 22.6 274 296-579 333-619 (638)
42 KOG1155 Anaphase-promoting com 99.5 2.1E-10 4.6E-15 113.4 31.5 325 247-579 160-494 (559)
43 KOG1126 DNA-binding cell divis 99.5 7.1E-12 1.5E-16 129.6 21.6 245 327-579 333-585 (638)
44 PRK10747 putative protoheme IX 99.5 6E-11 1.3E-15 125.1 28.6 274 296-579 98-389 (398)
45 KOG1155 Anaphase-promoting com 99.5 9.5E-10 2.1E-14 108.9 34.5 357 145-510 159-532 (559)
46 PRK10747 putative protoheme IX 99.4 1.7E-10 3.6E-15 121.7 29.9 289 194-547 97-391 (398)
47 TIGR00540 hemY_coli hemY prote 99.4 6.1E-10 1.3E-14 118.2 32.5 223 320-545 160-398 (409)
48 KOG4318 Bicoid mRNA stability 99.4 1.5E-09 3.3E-14 115.4 34.4 464 101-584 11-598 (1088)
49 KOG1915 Cell cycle control pro 99.4 9.7E-09 2.1E-13 102.0 36.7 411 162-581 85-537 (677)
50 TIGR00540 hemY_coli hemY prote 99.4 4.8E-10 1E-14 118.9 29.4 281 294-579 96-398 (409)
51 TIGR02521 type_IV_pilW type IV 99.3 2.9E-10 6.2E-15 111.2 23.4 197 382-579 30-231 (234)
52 PF13429 TPR_15: Tetratricopep 99.3 1.2E-11 2.6E-16 124.6 12.6 161 314-476 111-275 (280)
53 KOG1173 Anaphase-promoting com 99.3 7.9E-09 1.7E-13 105.2 30.6 463 30-529 33-534 (611)
54 KOG2047 mRNA splicing factor [ 99.3 4.8E-07 1E-11 93.6 42.6 430 50-492 104-629 (835)
55 PF13041 PPR_2: PPR repeat fam 99.3 6.6E-12 1.4E-16 88.6 5.2 50 78-127 1-50 (50)
56 COG3071 HemY Uncharacterized e 99.2 2.2E-08 4.7E-13 98.1 29.6 289 194-545 97-389 (400)
57 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 3.1E-16 86.9 5.7 50 179-228 1-50 (50)
58 KOG2376 Signal recognition par 99.2 1E-07 2.3E-12 97.7 35.3 438 87-574 19-514 (652)
59 KOG1840 Kinesin light chain [C 99.2 1.1E-08 2.3E-13 107.6 29.4 230 349-578 200-477 (508)
60 KOG2047 mRNA splicing factor [ 99.2 7.9E-07 1.7E-11 92.0 41.7 498 65-579 91-686 (835)
61 KOG4162 Predicted calmodulin-b 99.2 1.1E-07 2.4E-12 100.5 36.4 420 145-581 318-784 (799)
62 KOG0547 Translocase of outer m 99.2 2.6E-08 5.6E-13 99.6 28.1 185 392-580 335-532 (606)
63 COG3071 HemY Uncharacterized e 99.2 5.5E-08 1.2E-12 95.4 28.6 274 163-442 97-389 (400)
64 PRK12370 invasion protein regu 99.2 1E-08 2.2E-13 113.2 26.6 244 328-581 276-536 (553)
65 COG2956 Predicted N-acetylgluc 99.2 3E-08 6.6E-13 94.1 25.4 305 230-600 49-367 (389)
66 COG2956 Predicted N-acetylgluc 99.2 2.8E-08 6E-13 94.4 24.6 243 326-573 48-304 (389)
67 KOG3785 Uncharacterized conser 99.1 2.9E-07 6.2E-12 88.4 29.5 435 63-549 36-493 (557)
68 KOG1129 TPR repeat-containing 99.1 3.7E-09 7.9E-14 100.1 16.6 228 317-581 227-459 (478)
69 KOG1174 Anaphase-promoting com 99.1 7.9E-07 1.7E-11 87.3 32.5 267 280-552 230-506 (564)
70 PRK11189 lipoprotein NlpI; Pro 99.1 2E-08 4.4E-13 101.3 21.5 211 362-581 40-266 (296)
71 KOG1840 Kinesin light chain [C 99.1 1.9E-07 4.2E-12 98.3 29.0 247 217-545 200-478 (508)
72 TIGR02521 type_IV_pilW type IV 99.1 8E-08 1.7E-12 93.7 24.8 197 313-547 31-233 (234)
73 KOG1174 Anaphase-promoting com 99.0 2.2E-06 4.8E-11 84.3 33.3 294 295-625 209-519 (564)
74 PRK12370 invasion protein regu 99.0 4.5E-08 9.8E-13 108.0 23.9 211 362-580 275-502 (553)
75 KOG3616 Selective LIM binding 99.0 1.4E-06 2.9E-11 91.2 31.9 460 53-575 620-1129(1636)
76 KOG3616 Selective LIM binding 99.0 9.4E-07 2E-11 92.4 30.2 218 322-575 715-932 (1636)
77 KOG0985 Vesicle coat protein c 99.0 7E-06 1.5E-10 89.1 37.4 494 51-577 609-1246(1666)
78 KOG1156 N-terminal acetyltrans 99.0 2.3E-05 5.1E-10 81.8 39.3 122 452-576 374-507 (700)
79 COG3063 PilF Tfp pilus assembl 99.0 5E-08 1.1E-12 88.7 17.5 161 417-582 38-204 (250)
80 KOG3785 Uncharacterized conser 99.0 1.5E-05 3.2E-10 76.9 34.4 402 158-581 65-491 (557)
81 PRK11189 lipoprotein NlpI; Pro 98.9 4E-07 8.7E-12 91.9 24.4 226 327-560 40-280 (296)
82 KOG1127 TPR repeat-containing 98.9 4.1E-06 8.9E-11 91.1 32.3 531 31-578 474-1102(1238)
83 KOG3617 WD40 and TPR repeat-co 98.9 4.3E-06 9.2E-11 88.8 30.6 421 46-535 724-1189(1416)
84 KOG4162 Predicted calmodulin-b 98.9 9E-06 2E-10 86.5 32.0 427 108-552 316-789 (799)
85 KOG4340 Uncharacterized conser 98.8 7.1E-06 1.5E-10 77.3 27.2 385 153-579 13-442 (459)
86 KOG1125 TPR repeat-containing 98.8 8.4E-08 1.8E-12 98.3 15.9 217 360-579 297-526 (579)
87 KOG2376 Signal recognition par 98.8 8.2E-05 1.8E-09 77.0 36.5 206 29-248 28-256 (652)
88 KOG1129 TPR repeat-containing 98.8 4.2E-07 9E-12 86.5 18.4 226 185-442 227-457 (478)
89 KOG1156 N-terminal acetyltrans 98.8 0.00014 3E-09 76.2 38.0 440 93-543 20-508 (700)
90 PF12569 NARP1: NMDA receptor- 98.8 2.5E-05 5.5E-10 83.6 34.2 426 124-576 13-516 (517)
91 KOG0624 dsRNA-activated protei 98.8 1.4E-05 3E-10 76.9 27.4 294 257-579 44-369 (504)
92 KOG0548 Molecular co-chaperone 98.7 7.8E-06 1.7E-10 83.6 25.9 215 352-580 228-455 (539)
93 KOG3617 WD40 and TPR repeat-co 98.7 0.00078 1.7E-08 72.3 40.6 202 47-278 756-994 (1416)
94 PF04733 Coatomer_E: Coatomer 98.7 2.5E-07 5.5E-12 92.0 14.5 146 425-579 113-264 (290)
95 cd05804 StaR_like StaR_like; a 98.7 2.4E-05 5.3E-10 81.9 29.9 260 320-581 50-337 (355)
96 COG3063 PilF Tfp pilus assembl 98.7 9.8E-06 2.1E-10 74.0 22.3 190 358-551 45-241 (250)
97 PF12569 NARP1: NMDA receptor- 98.7 2.3E-05 5E-10 83.9 28.6 126 451-579 196-333 (517)
98 PF04733 Coatomer_E: Coatomer 98.6 1.2E-06 2.5E-11 87.3 16.6 224 317-551 39-270 (290)
99 KOG0985 Vesicle coat protein c 98.6 0.002 4.4E-08 70.9 44.5 77 498-582 1088-1164(1666)
100 KOG1914 mRNA cleavage and poly 98.6 0.00052 1.1E-08 70.5 33.6 75 79-158 19-94 (656)
101 KOG1127 TPR repeat-containing 98.6 6.2E-05 1.4E-09 82.3 28.5 422 150-577 492-993 (1238)
102 PRK04841 transcriptional regul 98.6 0.00061 1.3E-08 81.1 40.3 232 316-549 494-763 (903)
103 TIGR03302 OM_YfiO outer membra 98.5 7.5E-06 1.6E-10 80.1 19.4 180 381-580 31-232 (235)
104 PRK04841 transcriptional regul 98.5 9.4E-05 2E-09 88.0 32.4 322 260-581 383-761 (903)
105 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.6E-12 59.9 4.0 33 145-177 2-34 (34)
106 PRK15359 type III secretion sy 98.5 2.2E-06 4.7E-11 76.1 13.6 121 435-562 14-137 (144)
107 cd05804 StaR_like StaR_like; a 98.5 9.9E-05 2.1E-09 77.3 28.5 193 354-547 120-337 (355)
108 PRK10370 formate-dependent nit 98.5 7E-06 1.5E-10 77.1 17.4 146 422-581 24-174 (198)
109 KOG0548 Molecular co-chaperone 98.5 0.00024 5.2E-09 73.0 28.9 437 88-574 10-483 (539)
110 KOG1070 rRNA processing protei 98.5 1.4E-05 2.9E-10 90.1 21.5 200 380-583 1455-1666(1710)
111 PRK15359 type III secretion sy 98.5 2.4E-06 5.3E-11 75.8 13.0 107 470-581 14-122 (144)
112 PRK15363 pathogenicity island 98.4 5.5E-06 1.2E-10 72.2 13.3 96 484-579 34-131 (157)
113 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 1E-11 57.2 4.5 32 480-511 2-33 (34)
114 KOG1128 Uncharacterized conser 98.4 1.6E-05 3.4E-10 84.2 17.4 210 288-546 404-616 (777)
115 PLN02789 farnesyltranstransfer 98.4 0.0001 2.2E-09 74.5 22.9 176 386-564 74-268 (320)
116 KOG0624 dsRNA-activated protei 98.4 0.0029 6.4E-08 61.4 30.8 234 319-587 161-401 (504)
117 PRK15179 Vi polysaccharide bio 98.4 5.5E-05 1.2E-09 84.2 22.0 137 413-554 85-225 (694)
118 COG5010 TadD Flp pilus assembl 98.3 3.6E-05 7.9E-10 72.0 17.2 134 446-581 63-198 (257)
119 TIGR03302 OM_YfiO outer membra 98.3 5.3E-05 1.2E-09 74.0 19.0 183 346-549 31-235 (235)
120 PRK10370 formate-dependent nit 98.3 6.3E-05 1.4E-09 70.7 18.3 154 390-555 23-182 (198)
121 KOG1128 Uncharacterized conser 98.3 2E-05 4.4E-10 83.4 15.9 189 378-581 393-583 (777)
122 KOG1125 TPR repeat-containing 98.3 3.5E-05 7.6E-10 79.6 17.3 221 324-549 296-530 (579)
123 KOG4340 Uncharacterized conser 98.3 0.00019 4.1E-09 68.0 20.1 307 254-576 13-335 (459)
124 COG4783 Putative Zn-dependent 98.3 0.00041 8.9E-09 70.7 23.8 177 397-578 251-435 (484)
125 COG5010 TadD Flp pilus assembl 98.3 0.00011 2.3E-09 68.9 18.2 154 418-574 70-225 (257)
126 KOG1070 rRNA processing protei 98.3 0.00018 3.8E-09 81.5 22.8 220 248-468 1455-1690(1710)
127 TIGR02552 LcrH_SycD type III s 98.2 1.7E-05 3.7E-10 69.9 10.7 96 485-580 17-114 (135)
128 TIGR00756 PPR pentatricopeptid 98.2 3E-06 6.6E-11 54.4 4.2 35 81-115 1-35 (35)
129 PRK15179 Vi polysaccharide bio 98.1 0.00043 9.2E-09 77.3 22.9 143 379-525 82-230 (694)
130 PLN02789 farnesyltranstransfer 98.1 0.00032 6.9E-09 70.9 20.1 187 389-578 43-248 (320)
131 PRK14720 transcript cleavage f 98.1 0.00052 1.1E-08 77.3 23.4 148 385-562 118-268 (906)
132 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 53.6 4.4 35 182-216 1-35 (35)
133 COG4783 Putative Zn-dependent 98.1 0.00067 1.4E-08 69.2 21.8 147 413-581 305-455 (484)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.1E-05 1.3E-09 77.5 13.9 122 452-578 172-295 (395)
135 PF13812 PPR_3: Pentatricopept 98.0 8.7E-06 1.9E-10 51.8 4.1 34 80-113 1-34 (34)
136 KOG2053 Mitochondrial inherita 98.0 0.044 9.6E-07 60.3 40.8 131 91-226 20-154 (932)
137 KOG2053 Mitochondrial inherita 98.0 0.053 1.2E-06 59.7 37.3 160 416-578 438-606 (932)
138 PF13812 PPR_3: Pentatricopept 97.9 1.3E-05 2.7E-10 51.1 4.0 34 181-214 1-34 (34)
139 KOG3081 Vesicle coat complex C 97.9 0.0056 1.2E-07 57.7 22.1 145 423-577 117-268 (299)
140 TIGR02552 LcrH_SycD type III s 97.9 0.00038 8.2E-09 61.2 13.9 113 436-552 5-120 (135)
141 PRK14720 transcript cleavage f 97.9 0.0074 1.6E-07 68.3 26.5 149 348-527 116-267 (906)
142 PLN03088 SGT1, suppressor of 97.9 0.00019 4E-09 74.4 13.2 97 458-556 11-109 (356)
143 PF09976 TPR_21: Tetratricopep 97.8 0.0006 1.3E-08 60.7 14.4 85 491-576 54-143 (145)
144 KOG0553 TPR repeat-containing 97.8 0.00012 2.5E-09 70.0 9.7 94 458-554 90-186 (304)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00062 1.3E-08 70.2 15.8 126 386-515 172-298 (395)
146 KOG0550 Molecular chaperone (D 97.8 0.00068 1.5E-08 67.4 15.2 156 422-581 177-351 (486)
147 cd00189 TPR Tetratricopeptide 97.8 0.00021 4.6E-09 57.8 10.4 92 488-579 3-96 (100)
148 PF13414 TPR_11: TPR repeat; P 97.8 5.4E-05 1.2E-09 57.5 6.1 64 516-579 2-66 (69)
149 PF12895 Apc3: Anaphase-promot 97.8 2.7E-05 5.9E-10 61.9 4.3 78 498-576 2-83 (84)
150 KOG3060 Uncharacterized conser 97.8 0.0039 8.4E-08 58.2 18.5 154 422-579 60-219 (289)
151 KOG3060 Uncharacterized conser 97.8 0.0022 4.8E-08 59.8 16.5 151 427-579 25-182 (289)
152 PF09976 TPR_21: Tetratricopep 97.7 0.0018 4E-08 57.6 16.0 123 418-544 16-145 (145)
153 PF01535 PPR: PPR repeat; Int 97.7 3.5E-05 7.5E-10 47.7 3.4 31 81-111 1-31 (31)
154 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.3E-10 47.5 3.5 31 182-212 1-31 (31)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00041 8.8E-09 59.3 11.2 90 490-579 7-104 (119)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00069 1.5E-08 57.9 12.4 104 451-554 4-113 (119)
157 KOG0553 TPR repeat-containing 97.7 0.00029 6.3E-09 67.4 10.4 97 422-523 89-188 (304)
158 COG3898 Uncharacterized membra 97.6 0.048 1E-06 54.3 24.8 245 325-581 132-393 (531)
159 KOG1914 mRNA cleavage and poly 97.6 0.12 2.5E-06 53.9 37.3 161 414-577 366-536 (656)
160 PRK10153 DNA-binding transcrip 97.6 0.0025 5.5E-08 68.9 17.5 36 412-449 335-375 (517)
161 PRK02603 photosystem I assembl 97.6 0.0018 3.9E-08 59.6 14.3 129 413-565 34-165 (172)
162 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.4E-09 54.2 5.9 58 523-580 3-60 (65)
163 CHL00033 ycf3 photosystem I as 97.6 0.00064 1.4E-08 62.4 11.0 94 484-577 34-139 (168)
164 PRK02603 photosystem I assembl 97.6 0.00071 1.5E-08 62.3 11.3 82 485-566 35-121 (172)
165 KOG3081 Vesicle coat complex C 97.6 0.027 5.9E-07 53.2 20.8 173 372-551 97-276 (299)
166 PLN03088 SGT1, suppressor of 97.5 0.0013 2.9E-08 68.1 13.2 104 420-527 8-113 (356)
167 PF04840 Vps16_C: Vps16, C-ter 97.5 0.15 3.3E-06 51.6 30.8 124 387-530 181-304 (319)
168 PF14559 TPR_19: Tetratricopep 97.5 0.00026 5.7E-09 53.5 5.7 52 528-579 2-53 (68)
169 PF04840 Vps16_C: Vps16, C-ter 97.5 0.15 3.3E-06 51.5 26.7 110 450-576 178-287 (319)
170 PF13432 TPR_16: Tetratricopep 97.5 0.00037 8.1E-09 52.1 6.2 61 491-551 3-65 (65)
171 PRK15331 chaperone protein Sic 97.4 0.002 4.3E-08 56.7 10.2 89 491-579 43-133 (165)
172 cd00189 TPR Tetratricopeptide 97.4 0.0027 5.9E-08 51.0 10.9 90 457-548 8-99 (100)
173 COG4235 Cytochrome c biogenesi 97.3 0.0017 3.7E-08 62.7 10.6 102 482-583 153-259 (287)
174 PF05843 Suf: Suppressor of fo 97.3 0.011 2.4E-07 59.1 16.9 143 415-561 2-150 (280)
175 PF12895 Apc3: Anaphase-promot 97.3 0.00085 1.9E-08 53.2 7.2 81 427-510 2-83 (84)
176 PF13371 TPR_9: Tetratricopept 97.3 0.0006 1.3E-08 52.4 6.1 58 524-581 2-59 (73)
177 CHL00033 ycf3 photosystem I as 97.3 0.012 2.6E-07 53.9 15.7 110 414-550 35-153 (168)
178 KOG1130 Predicted G-alpha GTPa 97.3 0.0017 3.8E-08 64.4 10.3 258 322-579 26-343 (639)
179 PF13431 TPR_17: Tetratricopep 97.3 0.00014 2.9E-09 45.9 1.8 33 540-572 2-34 (34)
180 KOG2280 Vacuolar assembly/sort 97.3 0.39 8.5E-06 52.2 28.3 353 190-574 398-793 (829)
181 PF13414 TPR_11: TPR repeat; P 97.2 0.00061 1.3E-08 51.6 5.2 65 484-548 2-69 (69)
182 COG4700 Uncharacterized protei 97.2 0.01 2.2E-07 52.7 12.8 126 446-573 86-215 (251)
183 PF07079 DUF1347: Protein of u 97.2 0.34 7.4E-06 49.6 31.4 124 395-523 391-531 (549)
184 PF14559 TPR_19: Tetratricopep 97.2 0.00041 8.9E-09 52.4 3.5 56 498-553 4-61 (68)
185 PF14938 SNAP: Soluble NSF att 97.1 0.23 4.9E-06 49.8 23.8 124 388-511 119-263 (282)
186 COG4700 Uncharacterized protei 97.1 0.047 1E-06 48.6 15.8 100 480-579 84-188 (251)
187 PRK10153 DNA-binding transcrip 97.0 0.019 4.2E-07 62.2 16.2 135 443-581 331-483 (517)
188 PF14938 SNAP: Soluble NSF att 97.0 0.075 1.6E-06 53.3 19.5 114 421-549 101-228 (282)
189 PF13281 DUF4071: Domain of un 97.0 0.082 1.8E-06 53.9 19.4 162 388-552 146-340 (374)
190 PF10037 MRP-S27: Mitochondria 96.9 0.0083 1.8E-07 62.4 11.6 113 152-264 68-186 (429)
191 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0036 7.7E-08 64.4 8.6 64 516-579 74-140 (453)
192 PF12688 TPR_5: Tetratrico pep 96.9 0.012 2.5E-07 49.8 10.4 86 492-577 8-101 (120)
193 PF13371 TPR_9: Tetratricopept 96.9 0.0033 7.1E-08 48.2 6.4 64 493-556 3-68 (73)
194 PF06239 ECSIT: Evolutionarily 96.8 0.0079 1.7E-07 55.3 9.3 118 112-244 44-167 (228)
195 PF08579 RPM2: Mitochondrial r 96.8 0.012 2.5E-07 47.9 9.0 78 85-162 30-116 (120)
196 KOG1538 Uncharacterized conser 96.8 0.27 5.9E-06 52.2 21.1 126 388-545 708-845 (1081)
197 PRK10803 tol-pal system protei 96.8 0.0098 2.1E-07 58.3 10.4 93 487-579 145-245 (263)
198 PF13428 TPR_14: Tetratricopep 96.8 0.0024 5.1E-08 43.2 4.3 42 518-559 2-43 (44)
199 PRK10866 outer membrane biogen 96.8 0.1 2.2E-06 50.8 17.1 174 388-578 37-239 (243)
200 PRK15363 pathogenicity island 96.7 0.07 1.5E-06 46.9 14.1 93 387-480 39-134 (157)
201 PF08579 RPM2: Mitochondrial r 96.7 0.039 8.5E-07 45.0 11.3 80 417-497 28-116 (120)
202 PF10037 MRP-S27: Mitochondria 96.7 0.02 4.3E-07 59.6 12.3 128 102-229 50-186 (429)
203 PF07079 DUF1347: Protein of u 96.7 0.92 2E-05 46.6 36.2 74 504-578 443-522 (549)
204 PF06239 ECSIT: Evolutionarily 96.7 0.017 3.7E-07 53.2 10.1 99 402-501 33-154 (228)
205 KOG0550 Molecular chaperone (D 96.7 0.64 1.4E-05 47.1 21.7 147 359-511 180-347 (486)
206 PRK10866 outer membrane biogen 96.7 0.31 6.8E-06 47.4 19.8 51 293-343 43-99 (243)
207 KOG0543 FKBP-type peptidyl-pro 96.6 0.016 3.4E-07 58.4 10.5 83 517-625 257-339 (397)
208 KOG2041 WD40 repeat protein [G 96.6 1.3 2.9E-05 47.7 25.8 186 128-341 747-951 (1189)
209 PF05843 Suf: Suppressor of fo 96.6 0.027 5.9E-07 56.2 11.9 129 450-580 2-136 (280)
210 KOG2796 Uncharacterized conser 96.5 0.13 2.9E-06 48.5 14.8 137 315-453 179-323 (366)
211 PF12688 TPR_5: Tetratrico pep 96.5 0.091 2E-06 44.4 12.8 107 318-424 6-116 (120)
212 KOG1538 Uncharacterized conser 96.5 0.22 4.8E-06 52.9 17.7 127 115-274 598-726 (1081)
213 KOG1130 Predicted G-alpha GTPa 96.4 0.098 2.1E-06 52.5 14.5 131 416-546 197-344 (639)
214 PRK10803 tol-pal system protei 96.4 0.056 1.2E-06 53.0 12.8 101 451-551 145-251 (263)
215 KOG2280 Vacuolar assembly/sort 96.4 2 4.4E-05 47.0 29.1 107 388-510 689-795 (829)
216 KOG2796 Uncharacterized conser 96.4 0.43 9.4E-06 45.2 17.3 133 416-549 179-318 (366)
217 KOG1258 mRNA processing protei 96.2 2.4 5.2E-05 45.4 32.9 410 78-565 43-489 (577)
218 PF13424 TPR_12: Tetratricopep 96.1 0.0083 1.8E-07 46.6 4.5 60 519-578 7-73 (78)
219 KOG4555 TPR repeat-containing 96.1 0.035 7.5E-07 46.3 8.0 90 493-582 51-146 (175)
220 COG0457 NrfG FOG: TPR repeat [ 96.1 1.4 2.9E-05 42.0 27.6 194 383-580 59-265 (291)
221 PF13424 TPR_12: Tetratricopep 96.1 0.011 2.3E-07 46.0 4.8 60 487-546 7-75 (78)
222 KOG0543 FKBP-type peptidyl-pro 96.0 0.11 2.4E-06 52.5 12.3 138 421-580 215-355 (397)
223 COG3898 Uncharacterized membra 96.0 2.1 4.6E-05 43.1 26.2 240 263-511 132-389 (531)
224 PF13525 YfiO: Outer membrane 95.8 0.66 1.4E-05 43.8 16.7 167 389-572 11-199 (203)
225 KOG2041 WD40 repeat protein [G 95.8 3.8 8.1E-05 44.5 29.7 324 163-545 747-1085(1189)
226 PF09205 DUF1955: Domain of un 95.8 0.2 4.3E-06 42.1 10.8 139 426-583 14-152 (161)
227 PF13512 TPR_18: Tetratricopep 95.7 0.26 5.7E-06 42.6 11.8 72 494-565 19-98 (142)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.08 1.7E-06 54.7 9.9 63 484-546 74-141 (453)
229 KOG1920 IkappaB kinase complex 95.4 2.3 5E-05 49.1 21.0 158 295-511 893-1052(1265)
230 PF03704 BTAD: Bacterial trans 95.4 0.063 1.4E-06 47.7 7.6 61 519-579 64-124 (146)
231 PRK11906 transcriptional regul 95.4 0.24 5.1E-06 51.5 12.5 77 502-578 321-399 (458)
232 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.9 8.4E-05 42.1 31.6 131 45-178 39-189 (660)
233 PF12921 ATP13: Mitochondrial 95.3 0.24 5.3E-06 42.3 10.5 49 445-493 48-96 (126)
234 KOG1920 IkappaB kinase complex 95.3 3.3 7.1E-05 47.9 21.6 26 83-108 793-820 (1265)
235 PF13525 YfiO: Outer membrane 95.1 0.68 1.5E-05 43.7 14.2 50 455-504 147-197 (203)
236 COG4235 Cytochrome c biogenesi 95.1 0.88 1.9E-05 44.4 14.6 102 448-551 155-261 (287)
237 KOG1941 Acetylcholine receptor 95.0 0.62 1.3E-05 46.3 13.4 51 525-575 214-270 (518)
238 PF12921 ATP13: Mitochondrial 95.0 0.24 5.3E-06 42.3 9.6 50 479-528 46-99 (126)
239 COG0457 NrfG FOG: TPR repeat [ 95.0 3.4 7.3E-05 39.2 25.1 218 328-549 38-268 (291)
240 PF00515 TPR_1: Tetratricopept 94.9 0.052 1.1E-06 34.0 4.0 33 518-550 2-34 (34)
241 COG1729 Uncharacterized protei 94.8 0.19 4.2E-06 48.2 9.2 82 497-580 153-244 (262)
242 PRK11906 transcriptional regul 94.7 2.2 4.8E-05 44.5 17.1 142 430-575 274-431 (458)
243 KOG4234 TPR repeat-containing 94.6 0.2 4.4E-06 45.3 8.1 88 494-581 104-198 (271)
244 PF07719 TPR_2: Tetratricopept 94.5 0.095 2.1E-06 32.7 4.6 33 518-550 2-34 (34)
245 PF03704 BTAD: Bacterial trans 94.3 0.51 1.1E-05 41.8 10.6 70 417-487 65-138 (146)
246 KOG2610 Uncharacterized conser 94.3 1.1 2.3E-05 44.1 13.0 112 396-511 116-235 (491)
247 KOG3941 Intermediate in Toll s 94.3 0.36 7.9E-06 46.1 9.6 100 402-502 53-175 (406)
248 PF04097 Nic96: Nup93/Nic96; 94.0 4.2 9.1E-05 45.6 19.2 71 79-151 111-188 (613)
249 smart00299 CLH Clathrin heavy 93.9 2.7 5.8E-05 36.8 14.3 120 389-528 13-136 (140)
250 COG3118 Thioredoxin domain-con 93.9 1.6 3.5E-05 42.5 13.3 120 458-580 143-265 (304)
251 COG5107 RNA14 Pre-mRNA 3'-end 93.8 9.4 0.0002 39.5 31.9 133 414-550 397-535 (660)
252 COG3118 Thioredoxin domain-con 93.5 8 0.00017 37.9 17.2 175 401-577 121-299 (304)
253 smart00299 CLH Clathrin heavy 93.4 4.9 0.00011 35.1 15.1 86 118-207 10-95 (140)
254 PRK15331 chaperone protein Sic 93.3 2.3 5.1E-05 37.8 12.2 84 425-511 48-131 (165)
255 KOG2114 Vacuolar assembly/sort 93.2 17 0.00038 40.7 26.3 172 155-339 339-516 (933)
256 COG1729 Uncharacterized protei 93.1 0.99 2.1E-05 43.5 10.5 61 491-551 184-249 (262)
257 PF13281 DUF4071: Domain of un 93.0 11 0.00023 39.0 18.3 30 447-476 303-332 (374)
258 PF04053 Coatomer_WDAD: Coatom 92.8 4.1 9E-05 43.4 15.9 133 190-343 270-403 (443)
259 PF04184 ST7: ST7 protein; In 92.8 3.8 8.2E-05 43.0 14.7 59 521-579 263-323 (539)
260 PF10300 DUF3808: Protein of u 92.8 3.1 6.6E-05 45.0 15.1 20 492-511 312-331 (468)
261 PF04053 Coatomer_WDAD: Coatom 92.7 3.8 8.3E-05 43.6 15.3 157 227-409 272-428 (443)
262 COG4105 ComL DNA uptake lipopr 92.7 9.9 0.00021 36.5 18.4 168 393-579 44-232 (254)
263 KOG3941 Intermediate in Toll s 92.6 0.76 1.7E-05 44.0 8.7 98 169-266 53-173 (406)
264 PRK09687 putative lyase; Provi 92.4 13 0.00027 37.1 26.1 48 311-360 66-117 (280)
265 PF10300 DUF3808: Protein of u 92.3 6.5 0.00014 42.5 16.8 115 462-579 246-375 (468)
266 KOG2066 Vacuolar assembly/sort 92.2 22 0.00049 39.6 20.7 150 125-283 366-537 (846)
267 PF13512 TPR_18: Tetratricopep 92.0 5.4 0.00012 34.6 12.6 115 421-551 17-133 (142)
268 KOG1585 Protein required for f 92.0 11 0.00025 35.7 15.8 45 385-441 93-137 (308)
269 COG4105 ComL DNA uptake lipopr 91.9 12 0.00026 35.9 20.3 141 416-580 36-196 (254)
270 KOG4555 TPR repeat-containing 91.9 1.4 2.9E-05 37.1 8.3 88 459-548 53-146 (175)
271 KOG4648 Uncharacterized conser 91.8 0.3 6.6E-06 47.9 5.2 113 455-574 103-218 (536)
272 KOG1941 Acetylcholine receptor 91.7 7.4 0.00016 39.0 14.5 129 418-546 126-275 (518)
273 COG4785 NlpI Lipoprotein NlpI, 91.5 9.3 0.0002 35.5 13.9 163 414-582 99-268 (297)
274 PF04184 ST7: ST7 protein; In 91.4 22 0.00047 37.7 18.8 98 454-551 264-380 (539)
275 PF13181 TPR_8: Tetratricopept 91.3 0.35 7.6E-06 30.1 3.6 31 519-549 3-33 (34)
276 PF13176 TPR_7: Tetratricopept 91.2 0.35 7.5E-06 30.8 3.5 26 553-578 1-26 (36)
277 KOG1585 Protein required for f 91.1 14 0.00031 35.1 17.1 199 351-574 34-250 (308)
278 PF13428 TPR_14: Tetratricopep 91.1 0.45 9.8E-06 31.9 4.2 37 487-523 3-41 (44)
279 KOG2610 Uncharacterized conser 91.1 2.2 4.7E-05 42.1 10.2 159 426-587 115-283 (491)
280 PF13176 TPR_7: Tetratricopept 90.9 0.39 8.4E-06 30.5 3.5 28 519-546 1-28 (36)
281 PF09205 DUF1955: Domain of un 90.9 9.2 0.0002 32.5 12.6 59 417-476 89-147 (161)
282 KOG0890 Protein kinase of the 90.8 57 0.0012 41.5 29.3 63 517-581 1670-1732(2382)
283 KOG2066 Vacuolar assembly/sort 90.8 32 0.00068 38.5 26.3 100 157-263 363-467 (846)
284 PF07035 Mic1: Colon cancer-as 90.7 12 0.00027 33.6 14.2 37 201-237 14-50 (167)
285 KOG2114 Vacuolar assembly/sort 89.8 40 0.00086 38.1 21.4 111 89-206 377-488 (933)
286 KOG1258 mRNA processing protei 89.4 36 0.00077 36.9 26.4 120 450-571 298-420 (577)
287 PF08631 SPO22: Meiosis protei 89.2 25 0.00054 35.0 25.7 19 526-544 255-273 (278)
288 TIGR02508 type_III_yscG type I 89.1 5.9 0.00013 31.7 9.2 60 290-352 47-106 (115)
289 PF09613 HrpB1_HrpK: Bacterial 88.4 16 0.00034 32.5 12.6 90 457-549 18-109 (160)
290 PF14853 Fis1_TPR_C: Fis1 C-te 88.4 2.5 5.4E-05 29.6 6.2 51 553-629 3-53 (53)
291 COG3629 DnrI DNA-binding trans 88.1 3.3 7.1E-05 40.7 9.1 73 384-456 154-234 (280)
292 PF10345 Cohesin_load: Cohesin 87.6 55 0.0012 37.0 33.3 58 521-578 538-604 (608)
293 KOG4648 Uncharacterized conser 87.2 1.7 3.7E-05 42.9 6.5 86 421-517 104-198 (536)
294 PF13170 DUF4003: Protein of u 87.2 13 0.00029 37.2 13.1 63 97-159 79-150 (297)
295 KOG3364 Membrane protein invol 87.1 6.9 0.00015 33.4 9.1 89 516-630 31-124 (149)
296 PF07035 Mic1: Colon cancer-as 87.1 20 0.00043 32.3 12.7 133 237-377 15-149 (167)
297 PF11207 DUF2989: Protein of u 87.0 3.1 6.6E-05 38.4 7.7 76 495-571 117-198 (203)
298 PF09613 HrpB1_HrpK: Bacterial 87.0 3.7 8.1E-05 36.4 7.9 52 529-580 22-73 (160)
299 PF02259 FAT: FAT domain; Int 86.9 41 0.00088 34.7 21.1 148 413-563 145-304 (352)
300 COG4649 Uncharacterized protei 86.3 11 0.00024 33.7 10.3 50 294-343 70-124 (221)
301 TIGR02561 HrpB1_HrpK type III 86.1 4.3 9.2E-05 35.4 7.6 53 529-581 22-74 (153)
302 PF10602 RPN7: 26S proteasome 85.1 24 0.00053 32.3 12.8 93 417-511 39-139 (177)
303 PF02259 FAT: FAT domain; Int 84.8 50 0.0011 34.0 17.0 67 516-582 145-215 (352)
304 PRK10941 hypothetical protein; 84.7 4 8.8E-05 40.1 7.9 60 520-579 184-243 (269)
305 KOG1586 Protein required for f 84.3 38 0.00083 32.1 14.7 23 528-550 165-187 (288)
306 PF14853 Fis1_TPR_C: Fis1 C-te 84.0 2.3 5E-05 29.8 4.2 33 522-554 6-38 (53)
307 COG3629 DnrI DNA-binding trans 83.9 4.6 0.0001 39.7 7.8 59 521-579 157-215 (280)
308 PF00637 Clathrin: Region in C 83.8 1.5 3.3E-05 38.5 4.3 53 187-239 13-65 (143)
309 PF00515 TPR_1: Tetratricopept 83.8 2.7 5.9E-05 26.0 4.3 28 415-442 2-29 (34)
310 KOG4570 Uncharacterized conser 83.4 12 0.00027 36.8 10.2 97 377-477 58-163 (418)
311 PF07719 TPR_2: Tetratricopept 83.3 1.6 3.6E-05 26.9 3.1 29 552-580 2-30 (34)
312 PF10602 RPN7: 26S proteasome 82.3 12 0.00026 34.3 9.6 92 486-577 37-139 (177)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 82.0 12 0.00026 29.9 7.8 63 429-493 22-84 (103)
314 PF04097 Nic96: Nup93/Nic96; 81.9 96 0.0021 35.0 21.2 85 321-410 266-354 (613)
315 PF07721 TPR_4: Tetratricopept 81.6 1.7 3.7E-05 25.2 2.5 24 552-575 2-25 (26)
316 KOG4234 TPR repeat-containing 81.5 28 0.0006 32.1 11.0 68 488-555 137-206 (271)
317 PRK12798 chemotaxis protein; R 81.3 73 0.0016 33.2 20.3 179 396-577 125-321 (421)
318 PF06552 TOM20_plant: Plant sp 81.3 14 0.0003 33.5 9.0 46 533-578 51-100 (186)
319 PF02284 COX5A: Cytochrome c o 81.2 11 0.00024 30.4 7.4 60 432-493 28-87 (108)
320 PRK15180 Vi polysaccharide bio 80.9 14 0.0003 38.5 10.0 119 426-549 301-423 (831)
321 smart00028 TPR Tetratricopepti 80.9 2.9 6.4E-05 24.6 3.7 30 520-549 4-33 (34)
322 PF13374 TPR_10: Tetratricopep 80.8 2.5 5.5E-05 27.4 3.5 28 552-579 3-30 (42)
323 KOG1308 Hsp70-interacting prot 80.8 1 2.2E-05 44.6 2.1 90 497-586 126-217 (377)
324 PF13174 TPR_6: Tetratricopept 80.6 2.9 6.3E-05 25.4 3.5 27 523-549 6-32 (33)
325 PF13170 DUF4003: Protein of u 80.4 68 0.0015 32.3 16.3 49 329-377 78-132 (297)
326 COG4785 NlpI Lipoprotein NlpI, 79.6 7.3 0.00016 36.2 6.9 90 459-551 75-167 (297)
327 PF09986 DUF2225: Uncharacteri 79.2 9.6 0.00021 36.1 8.0 66 517-582 118-196 (214)
328 PF13181 TPR_8: Tetratricopept 78.7 3.6 7.8E-05 25.3 3.5 28 552-579 2-29 (34)
329 PRK09687 putative lyase; Provi 78.2 76 0.0017 31.6 26.0 17 250-266 141-157 (280)
330 PF13174 TPR_6: Tetratricopept 78.1 2.7 5.9E-05 25.5 2.8 28 553-580 2-29 (33)
331 KOG0376 Serine-threonine phosp 77.6 5.1 0.00011 41.8 6.0 86 494-579 13-100 (476)
332 PRK15180 Vi polysaccharide bio 77.3 15 0.00033 38.3 9.0 129 395-526 301-434 (831)
333 KOG1550 Extracellular protein 77.2 1.3E+02 0.0027 33.6 22.6 79 500-581 454-539 (552)
334 PF00637 Clathrin: Region in C 76.9 1.4 3E-05 38.8 1.6 85 120-207 12-96 (143)
335 PF13374 TPR_10: Tetratricopep 76.8 5.4 0.00012 25.8 4.2 29 518-546 3-31 (42)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 75.3 16 0.00035 29.1 6.7 46 510-555 35-80 (103)
337 KOG0276 Vesicle coat complex C 75.3 33 0.00072 37.1 11.1 148 396-576 599-746 (794)
338 PF04910 Tcf25: Transcriptiona 75.0 42 0.00091 34.8 12.0 64 516-579 99-167 (360)
339 TIGR02508 type_III_yscG type I 75.0 32 0.0007 27.7 8.3 86 130-219 20-105 (115)
340 PF02284 COX5A: Cytochrome c o 74.5 19 0.0004 29.1 7.0 48 510-557 38-85 (108)
341 COG2976 Uncharacterized protei 74.4 72 0.0016 29.4 14.1 111 432-550 70-192 (207)
342 PF13431 TPR_17: Tetratricopep 72.8 4.4 9.6E-05 25.3 2.7 23 381-403 11-33 (34)
343 PRK11619 lytic murein transgly 71.9 1.8E+02 0.004 33.0 31.5 116 427-545 254-374 (644)
344 KOG0545 Aryl-hydrocarbon recep 71.5 17 0.00038 34.5 7.2 55 525-579 238-292 (329)
345 PF14561 TPR_20: Tetratricopep 71.5 8.1 0.00018 30.7 4.6 44 537-580 8-51 (90)
346 KOG4570 Uncharacterized conser 71.4 43 0.00094 33.2 10.0 100 145-246 59-165 (418)
347 COG4649 Uncharacterized protei 71.2 80 0.0017 28.5 15.5 119 424-545 68-195 (221)
348 COG3947 Response regulator con 70.9 14 0.00029 36.1 6.5 60 520-579 282-341 (361)
349 TIGR02561 HrpB1_HrpK type III 70.6 75 0.0016 27.9 11.2 66 461-529 22-89 (153)
350 KOG1464 COP9 signalosome, subu 70.3 1.1E+02 0.0024 29.7 17.6 221 317-546 69-328 (440)
351 PF11207 DUF2989: Protein of u 70.2 39 0.00084 31.4 9.1 43 462-504 153-197 (203)
352 PF07721 TPR_4: Tetratricopept 69.2 9.3 0.0002 22.0 3.3 20 490-509 6-25 (26)
353 COG2909 MalT ATP-dependent tra 68.9 2.2E+02 0.0049 32.8 19.7 183 395-581 427-648 (894)
354 PRK13800 putative oxidoreducta 68.6 2.6E+02 0.0056 33.4 26.8 24 275-298 628-651 (897)
355 TIGR03504 FimV_Cterm FimV C-te 68.1 8.7 0.00019 25.7 3.4 27 555-581 3-29 (44)
356 PF08631 SPO22: Meiosis protei 67.4 1.4E+02 0.003 29.8 24.7 22 557-578 252-273 (278)
357 COG4455 ImpE Protein of avirul 67.1 23 0.00049 33.2 6.9 63 489-551 5-69 (273)
358 KOG1550 Extracellular protein 66.6 2.2E+02 0.0047 31.8 17.3 82 500-583 343-429 (552)
359 KOG4642 Chaperone-dependent E3 66.0 16 0.00034 34.7 5.7 80 500-579 25-106 (284)
360 PF09670 Cas_Cas02710: CRISPR- 65.5 1.1E+02 0.0025 32.0 12.9 123 423-546 140-270 (379)
361 PF09477 Type_III_YscG: Bacter 65.4 70 0.0015 26.2 8.4 48 294-343 52-99 (116)
362 PF04190 DUF410: Protein of un 64.3 1.5E+02 0.0033 29.1 17.0 159 162-342 2-170 (260)
363 PF13929 mRNA_stabil: mRNA sta 64.1 1.6E+02 0.0034 29.2 13.1 111 95-205 143-262 (292)
364 KOG1586 Protein required for f 64.1 1.4E+02 0.003 28.6 15.7 87 463-549 128-227 (288)
365 PRK10941 hypothetical protein; 63.2 50 0.0011 32.6 9.1 67 489-555 185-253 (269)
366 KOG2396 HAT (Half-A-TPR) repea 61.5 2.3E+02 0.005 30.4 30.1 455 65-554 94-568 (568)
367 PRK13342 recombination factor 61.1 1.7E+02 0.0038 31.1 13.6 48 314-361 228-278 (413)
368 KOG4507 Uncharacterized conser 61.1 22 0.00048 38.2 6.4 98 460-560 618-719 (886)
369 KOG4279 Serine/threonine prote 60.7 1.6E+02 0.0035 33.0 12.8 191 315-559 203-408 (1226)
370 PF11768 DUF3312: Protein of u 60.7 88 0.0019 33.8 10.8 56 387-442 412-472 (545)
371 KOG1498 26S proteasome regulat 60.7 2.1E+02 0.0046 29.6 15.7 109 489-601 135-262 (439)
372 PF06552 TOM20_plant: Plant sp 60.6 25 0.00054 31.9 5.9 28 501-528 96-124 (186)
373 PF13934 ELYS: Nuclear pore co 60.5 1.6E+02 0.0035 28.2 12.4 105 418-531 80-186 (226)
374 cd08819 CARD_MDA5_2 Caspase ac 59.4 38 0.00081 26.6 5.8 33 296-329 50-82 (88)
375 COG4976 Predicted methyltransf 58.7 15 0.00033 34.5 4.3 57 494-550 4-62 (287)
376 PF12862 Apc5: Anaphase-promot 58.4 28 0.0006 27.9 5.5 53 527-579 8-69 (94)
377 smart00386 HAT HAT (Half-A-TPR 58.3 17 0.00037 21.6 3.4 29 531-559 1-29 (33)
378 KOG0551 Hsp90 co-chaperone CNS 57.7 70 0.0015 32.1 8.7 90 488-577 84-179 (390)
379 KOG3807 Predicted membrane pro 57.6 2E+02 0.0043 28.9 11.7 20 535-554 380-399 (556)
380 PF13762 MNE1: Mitochondrial s 57.5 1.2E+02 0.0027 26.6 9.4 51 179-229 77-128 (145)
381 PRK13800 putative oxidoreducta 57.3 4E+02 0.0088 31.8 27.6 159 304-476 719-879 (897)
382 PF14863 Alkyl_sulf_dimr: Alky 56.9 44 0.00096 29.2 6.7 66 501-569 57-122 (141)
383 PF07163 Pex26: Pex26 protein; 55.7 1.2E+02 0.0027 29.7 9.9 88 319-406 89-181 (309)
384 KOG0276 Vesicle coat complex C 55.2 1.1E+02 0.0025 33.3 10.4 99 161-276 648-746 (794)
385 KOG0403 Neoplastic transformat 54.8 2.8E+02 0.0061 29.2 18.9 58 387-444 513-573 (645)
386 PF14561 TPR_20: Tetratricopep 54.6 1E+02 0.0022 24.4 8.0 62 516-577 21-85 (90)
387 KOG4077 Cytochrome c oxidase, 52.9 83 0.0018 26.7 7.1 71 432-513 67-137 (149)
388 TIGR03504 FimV_Cterm FimV C-te 52.7 27 0.00058 23.4 3.6 24 187-210 5-28 (44)
389 PF07720 TPR_3: Tetratricopept 52.2 48 0.001 21.0 4.6 30 520-549 4-35 (36)
390 PF11846 DUF3366: Domain of un 51.8 53 0.0011 30.5 7.0 35 514-548 141-175 (193)
391 PF10579 Rapsyn_N: Rapsyn N-te 50.8 44 0.00095 25.7 4.9 20 488-507 46-65 (80)
392 PF04910 Tcf25: Transcriptiona 50.3 3.2E+02 0.0068 28.5 18.6 90 456-549 110-225 (360)
393 PHA02875 ankyrin repeat protei 50.1 3.4E+02 0.0073 28.7 17.0 20 157-176 72-91 (413)
394 PF07163 Pex26: Pex26 protein; 49.6 1.1E+02 0.0023 30.1 8.4 87 85-173 88-181 (309)
395 COG1747 Uncharacterized N-term 49.3 3.7E+02 0.0081 29.0 23.5 162 382-550 65-238 (711)
396 KOG3824 Huntingtin interacting 48.9 26 0.00056 34.4 4.3 60 496-555 127-188 (472)
397 PF15469 Sec5: Exocyst complex 48.9 1.7E+02 0.0037 26.9 9.8 115 419-555 62-177 (182)
398 PF10579 Rapsyn_N: Rapsyn N-te 48.4 49 0.0011 25.4 4.8 46 426-471 18-65 (80)
399 KOG0292 Vesicle coat complex C 47.3 42 0.00091 38.1 6.1 114 427-572 606-719 (1202)
400 COG4455 ImpE Protein of avirul 47.2 2.6E+02 0.0056 26.5 11.3 124 417-551 4-139 (273)
401 PF11663 Toxin_YhaV: Toxin wit 46.6 25 0.00054 30.0 3.4 31 93-125 108-138 (140)
402 KOG3824 Huntingtin interacting 46.1 31 0.00066 34.0 4.3 99 527-637 126-225 (472)
403 cd08326 CARD_CASP9 Caspase act 45.4 51 0.0011 25.8 4.8 35 295-329 43-77 (84)
404 PF09477 Type_III_YscG: Bacter 45.3 1.7E+02 0.0038 24.1 9.8 81 231-314 21-101 (116)
405 KOG2062 26S proteasome regulat 45.1 5.1E+02 0.011 29.4 26.0 49 294-342 369-424 (929)
406 KOG4507 Uncharacterized conser 44.8 73 0.0016 34.5 7.1 134 445-581 567-706 (886)
407 PHA02875 ankyrin repeat protei 44.4 4.1E+02 0.0089 28.1 18.6 146 156-310 38-193 (413)
408 COG2976 Uncharacterized protei 44.1 2.7E+02 0.0058 25.9 14.3 52 392-443 135-188 (207)
409 PF11846 DUF3366: Domain of un 43.5 89 0.0019 29.0 7.2 51 461-511 120-170 (193)
410 PF11838 ERAP1_C: ERAP1-like C 43.3 3.7E+02 0.0079 27.2 17.3 97 465-561 146-246 (324)
411 PF10366 Vps39_1: Vacuolar sor 42.1 1.4E+02 0.003 24.7 7.2 28 314-341 40-67 (108)
412 PF10366 Vps39_1: Vacuolar sor 41.9 1.4E+02 0.0031 24.6 7.2 28 182-209 40-67 (108)
413 COG1747 Uncharacterized N-term 41.5 4.9E+02 0.011 28.2 20.6 93 312-409 65-157 (711)
414 COG2912 Uncharacterized conser 41.4 66 0.0014 31.4 5.8 59 521-579 185-243 (269)
415 KOG2063 Vacuolar assembly/sort 40.9 6.7E+02 0.014 29.5 19.1 28 315-342 506-533 (877)
416 COG5159 RPN6 26S proteasome re 40.7 3.7E+02 0.0081 26.6 11.4 132 320-451 10-166 (421)
417 KOG2422 Uncharacterized conser 40.0 2.6E+02 0.0056 30.6 10.2 123 459-581 248-408 (665)
418 PRK10564 maltose regulon perip 39.9 47 0.001 32.9 4.7 39 183-221 259-297 (303)
419 PF07575 Nucleopor_Nup85: Nup8 39.9 5.8E+02 0.013 28.5 14.9 26 80-106 149-174 (566)
420 PF13934 ELYS: Nuclear pore co 39.6 2.3E+02 0.0049 27.2 9.3 113 396-518 91-205 (226)
421 cd08819 CARD_MDA5_2 Caspase ac 39.5 1.9E+02 0.0041 22.8 7.2 66 235-302 21-86 (88)
422 PF15161 Neuropep_like: Neurop 39.3 11 0.00024 26.1 0.2 18 675-693 11-28 (65)
423 PF12968 DUF3856: Domain of Un 38.7 1.7E+02 0.0036 24.7 6.8 58 520-577 58-126 (144)
424 PF12968 DUF3856: Domain of Un 38.1 2.5E+02 0.0054 23.7 9.8 61 486-546 56-129 (144)
425 PF13762 MNE1: Mitochondrial s 37.9 2.8E+02 0.0061 24.4 10.6 76 387-462 43-128 (145)
426 TIGR02270 conserved hypothetic 37.3 5.3E+02 0.012 27.4 24.9 121 381-512 159-279 (410)
427 COG4976 Predicted methyltransf 36.3 64 0.0014 30.5 4.7 56 527-582 5-60 (287)
428 PF11663 Toxin_YhaV: Toxin wit 36.1 47 0.001 28.5 3.5 34 191-226 105-138 (140)
429 KOG3364 Membrane protein invol 36.0 2.9E+02 0.0063 24.0 9.3 35 523-557 77-111 (149)
430 cd00280 TRFH Telomeric Repeat 35.8 1.1E+02 0.0023 28.1 5.7 30 523-553 117-146 (200)
431 KOG4077 Cytochrome c oxidase, 35.6 1.8E+02 0.0038 24.8 6.5 40 510-549 77-116 (149)
432 PRK10564 maltose regulon perip 35.4 69 0.0015 31.8 5.0 39 316-354 260-298 (303)
433 KOG1811 Predicted Zn2+-binding 35.4 6.4E+02 0.014 27.7 13.6 75 485-560 556-631 (1141)
434 PF06957 COPI_C: Coatomer (COP 35.0 79 0.0017 33.3 5.7 44 507-550 288-333 (422)
435 cd08332 CARD_CASP2 Caspase act 34.9 98 0.0021 24.6 5.0 31 296-326 48-78 (90)
436 PF11848 DUF3368: Domain of un 34.4 1.3E+02 0.0029 20.4 5.0 33 192-224 13-45 (48)
437 PRK13342 recombination factor 34.2 6E+02 0.013 27.0 17.1 101 345-463 173-279 (413)
438 PF14689 SPOB_a: Sensor_kinase 32.8 61 0.0013 23.6 3.3 25 185-209 27-51 (62)
439 PF14689 SPOB_a: Sensor_kinase 32.5 68 0.0015 23.3 3.5 26 316-341 26-51 (62)
440 PF07064 RIC1: RIC1; InterPro 32.1 5E+02 0.011 25.5 14.5 155 82-245 84-249 (258)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 31.8 2.8E+02 0.0062 23.6 7.8 73 501-576 49-124 (126)
442 KOG2063 Vacuolar assembly/sort 31.7 9.2E+02 0.02 28.4 21.7 127 83-227 507-637 (877)
443 KOG0403 Neoplastic transformat 31.2 6.7E+02 0.014 26.6 24.1 55 490-544 514-570 (645)
444 KOG0687 26S proteasome regulat 31.0 5.8E+02 0.013 25.9 12.2 92 383-476 104-208 (393)
445 PF14669 Asp_Glu_race_2: Putat 30.9 4.4E+02 0.0095 24.5 15.0 97 303-409 97-207 (233)
446 KOG2471 TPR repeat-containing 30.9 7.1E+02 0.015 26.9 15.4 306 208-528 9-380 (696)
447 PF08225 Antimicrobial19: Pseu 30.1 20 0.00044 19.2 0.3 12 681-692 10-21 (23)
448 PF10255 Paf67: RNA polymerase 29.7 3.6E+02 0.0079 28.4 9.4 55 286-340 126-191 (404)
449 PF04090 RNA_pol_I_TF: RNA pol 29.6 4.7E+02 0.01 24.4 9.7 132 413-561 40-188 (199)
450 TIGR02270 conserved hypothetic 29.4 7.1E+02 0.015 26.4 23.9 163 87-266 45-207 (410)
451 PF11848 DUF3368: Domain of un 29.3 1.9E+02 0.0041 19.7 5.2 31 426-456 14-44 (48)
452 COG5191 Uncharacterized conser 28.5 1.1E+02 0.0025 30.3 5.1 77 481-557 103-182 (435)
453 KOG0376 Serine-threonine phosp 28.0 71 0.0015 33.8 3.9 57 525-581 12-68 (476)
454 COG0790 FOG: TPR repeat, SEL1 27.3 6.2E+02 0.013 25.1 20.5 76 503-581 173-267 (292)
455 PF08967 DUF1884: Domain of un 27.3 70 0.0015 24.5 2.7 27 610-636 7-33 (85)
456 KOG0686 COP9 signalosome, subu 27.3 7.5E+02 0.016 26.0 16.9 201 416-661 152-376 (466)
457 PF12069 DUF3549: Protein of u 26.9 7E+02 0.015 25.6 12.2 84 389-475 172-256 (340)
458 PF12862 Apc5: Anaphase-promot 26.2 3.3E+02 0.0072 21.6 8.6 20 457-476 49-68 (94)
459 PRK11639 zinc uptake transcrip 26.2 2.4E+02 0.0052 25.6 6.7 47 83-129 28-74 (169)
460 KOG0687 26S proteasome regulat 26.0 7.1E+02 0.015 25.3 13.2 11 653-663 320-330 (393)
461 COG3947 Response regulator con 25.8 6.8E+02 0.015 25.0 14.9 56 488-543 282-339 (361)
462 PF11838 ERAP1_C: ERAP1-like C 25.8 6.9E+02 0.015 25.1 14.4 28 64-91 55-84 (324)
463 cd08323 CARD_APAF1 Caspase act 25.6 2E+02 0.0042 22.7 5.1 32 296-327 42-73 (86)
464 PF14669 Asp_Glu_race_2: Putat 25.4 5.5E+02 0.012 23.8 13.4 93 174-276 100-206 (233)
465 COG2256 MGS1 ATPase related to 25.0 8.3E+02 0.018 25.7 12.1 53 310-362 243-298 (436)
466 COG4941 Predicted RNA polymera 24.9 7.5E+02 0.016 25.2 11.3 119 430-552 272-400 (415)
467 KOG4279 Serine/threonine prote 24.6 1.4E+02 0.003 33.6 5.4 26 679-704 490-515 (1226)
468 COG0735 Fur Fe2+/Zn2+ uptake r 24.6 3.2E+02 0.0069 24.0 7.0 60 439-500 11-70 (145)
469 PF10516 SHNi-TPR: SHNi-TPR; 24.5 1.4E+02 0.0031 19.2 3.5 28 552-579 2-29 (38)
470 PRK14956 DNA polymerase III su 24.3 6.1E+02 0.013 27.5 10.2 111 19-152 165-285 (484)
471 PF11768 DUF3312: Protein of u 24.2 5.1E+02 0.011 28.3 9.4 27 82-108 410-436 (545)
472 COG0735 Fur Fe2+/Zn2+ uptake r 24.1 3.3E+02 0.0071 23.9 7.0 42 224-265 28-69 (145)
473 cd00280 TRFH Telomeric Repeat 24.0 4E+02 0.0087 24.5 7.3 31 492-522 118-148 (200)
474 PF00244 14-3-3: 14-3-3 protei 23.6 6.7E+02 0.015 24.2 11.0 160 319-478 7-198 (236)
475 PF04034 DUF367: Domain of unk 23.5 4.7E+02 0.01 22.4 7.8 57 486-542 67-124 (127)
476 PRK11639 zinc uptake transcrip 23.3 2.8E+02 0.0061 25.1 6.6 63 440-504 17-79 (169)
477 KOG0890 Protein kinase of the 22.8 1.9E+03 0.041 29.2 29.3 58 450-511 1671-1728(2382)
478 KOG4521 Nuclear pore complex, 22.7 1.4E+03 0.031 27.7 14.8 22 388-409 925-946 (1480)
479 KOG1524 WD40 repeat-containing 22.6 3.6E+02 0.0077 29.1 7.7 88 485-575 573-668 (737)
480 cd08326 CARD_CASP9 Caspase act 22.5 3.8E+02 0.0083 21.0 6.8 40 394-433 41-80 (84)
481 PF04762 IKI3: IKI3 family; I 22.1 8.8E+02 0.019 29.1 11.9 50 522-576 877-926 (928)
482 PF09986 DUF2225: Uncharacteri 21.9 6.9E+02 0.015 23.7 9.5 21 491-511 171-191 (214)
483 PF15015 NYD-SP12_N: Spermatog 21.8 1.8E+02 0.0038 30.4 5.2 21 490-510 233-253 (569)
484 PF02847 MA3: MA3 domain; Int 21.5 1.3E+02 0.0027 24.9 3.8 21 187-207 8-28 (113)
485 PF12796 Ank_2: Ankyrin repeat 21.2 3.8E+02 0.0083 20.5 6.5 17 159-175 32-48 (89)
486 PF12796 Ank_2: Ankyrin repeat 20.9 2.9E+02 0.0064 21.2 5.7 80 160-250 4-86 (89)
487 cd07153 Fur_like Ferric uptake 20.5 2.5E+02 0.0055 23.2 5.4 46 187-232 6-51 (116)
488 smart00544 MA3 Domain in DAP-5 20.3 4.9E+02 0.011 21.3 8.4 22 187-208 8-29 (113)
489 PF10475 DUF2450: Protein of u 20.2 4.6E+02 0.0099 26.3 8.1 25 317-341 131-155 (291)
490 KOG0292 Vesicle coat complex C 20.1 2.3E+02 0.0051 32.6 6.1 49 505-553 1070-1120(1202)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-135 Score=1172.83 Aligned_cols=697 Identities=38% Similarity=0.711 Sum_probs=675.0
Q ss_pred cchhHHhccc---ChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCC
Q 005000 18 PLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94 (720)
Q Consensus 18 ~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g 94 (720)
.+..++++|. .+..|.++|+.+++.|..++..++|+||++ |+++|+++.|+++|++|++||+++||+||++|++.|
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~-~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g 166 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM-FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH-HHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC
Confidence 3677888885 578899999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005000 95 SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174 (720)
Q Consensus 95 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 174 (720)
++++|+++|++|.+.|+.||.+||++++++|+..+++..+.++|..+++.|+.||+.++|+||++|+++|++++|.++|+
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHH
Q 005000 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254 (720)
Q Consensus 175 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 254 (720)
+|+.+|+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.|.++|..+.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHh----------------------------------------
Q 005000 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN---------------------------------------- 294 (720)
Q Consensus 255 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---------------------------------------- 294 (720)
|+|+++|+++|++++|.++|++|..+|+++||++|.+|++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 9999999999999999999999999888888887777654
Q ss_pred ------------------------------cCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005000 295 ------------------------------RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344 (720)
Q Consensus 295 ------------------------------~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (720)
+|++++|.++|++|.++|.++||++|.+|+++|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 45556666667777778889999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 005000 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424 (720)
Q Consensus 345 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 424 (720)
+||..||++++.+|++.|.++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCcc
Q 005000 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584 (720)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 584 (720)
.+++++|+++||..+|++|+++|+.+|+.+.|+.+.+++++++|+++..|+.|+++|++.|+|++|.++++.|+++|++|
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhhhhhhhhhHHHHHHHHHhhc
Q 005000 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664 (720)
Q Consensus 585 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~ 664 (720)
+||+|||++++++|.|.+||.+||+.++||.+|+++..+|++.||.||+..++ ++++++|+..+++||||||+|||||+
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999887 55888999999999999999999999
Q ss_pred CCCCCcEEEEcccccccccchhhhhcccccceeEEEecCCcccccCCCcCCCCC
Q 005000 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718 (720)
Q Consensus 665 ~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 718 (720)
||||+||||+||||||+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-124 Score=1058.58 Aligned_cols=613 Identities=33% Similarity=0.611 Sum_probs=598.5
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005000 77 RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155 (720)
Q Consensus 77 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 155 (720)
+++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||+.++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHH
Q 005000 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235 (720)
Q Consensus 156 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 235 (720)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 005000 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315 (720)
Q Consensus 236 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 315 (720)
.++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|.+ +|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------------------------------KTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------CChhH
Confidence 99999999999999999999999999999888888888876654 45677
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+.||..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.+++|+.|+..+|++|+++|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 87889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCc
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~ 635 (720)
.|+++|++.|+|++|.++++.|+++|+++.||+|||++++.+|.|.+||..||+.++|+..++++..+|++.||.||+..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhhhhhhhhhHHHHHHHHHhhcCCCCCcEEEEcccccccccchhhhhcccccceeEEEecCCcccccCCCcCC
Q 005000 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715 (720)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~cs 715 (720)
+++|+++++|+..+++||||||+|||||++|||+||||+||||||+|||+|+||||++++|+|||||.+|||||++|+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 005000 716 CKDYW 720 (720)
Q Consensus 716 c~~~w 720 (720)
|+|||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-73 Score=660.06 Aligned_cols=666 Identities=22% Similarity=0.300 Sum_probs=581.8
Q ss_pred hhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccC----CCCCcchHHHHHHHHHcCCC
Q 005000 20 ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI----PRPSVCLWNTMIKGYSRIDS 95 (720)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~----~~~~~~~~n~li~~~~~~g~ 95 (720)
...+-..+.+..+..+...+.+.|+.|+..+++.++.. +.+.+.++.|.++++.+ +.+++..+|+||.+|++.|+
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRL-CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 33444456788999999999999999999999999999 89999999999999754 45889999999999999999
Q ss_pred chHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 005000 96 HKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175 (720)
Q Consensus 96 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 175 (720)
.+.|+++|++|. +||.++|++++.+|++.|++++|.++|++|.+.|+.||.++|++++.++++.++++.+.+++..
T Consensus 137 ~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 999999999996 4899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC----CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCCh
Q 005000 176 SY----KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251 (720)
Q Consensus 176 ~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 251 (720)
+. .+|+.+||++|.+|++.|++++|.++|++|. .||.+||+++|.+|++.|+.++|.+++..|.+.|+.||.
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 64 4799999999999999999999999999996 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcC
Q 005000 252 ILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327 (720)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 327 (720)
.+|+.++.++++.|+++.|.+++..|.+ +|+.+||++|.+|++.|++++|.++|++|..+|.++||++|.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 9999999999999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 407 (720)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH
Q 005000 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487 (720)
Q Consensus 408 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 487 (720)
+|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.+++..+. +.|+.++..+
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCcccee
Confidence 99999999999999999999999999999999986 599999999999999999999999999999997 7899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHhHhhhcCC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-PDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 566 (720)
+++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|.+++++|.+.+ .+|..+|..+..+|.+.|+
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 999999999999999999999998 7899999999999999999999999999998754 2256889999999999999
Q ss_pred hhHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhh
Q 005000 567 WDNFRELRQMIL-DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645 (720)
Q Consensus 567 ~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~ 645 (720)
+++|.++++.|. +.|+.|+.... +..+ ......+..++++..+++ .+..||...+-.-+..|..
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y----~~lv----~~l~r~G~~~eA~~~~~~-------m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHY----ACVV----DLLGRAGKLTEAYNFINK-------MPITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHH----HHHH----HHHHhCCCHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Confidence 999999999998 67877654211 1011 111123455666666553 3578887765554554432
Q ss_pred hhhhhhhHHHHH-HHHHhhcCCCCCcEEEEcccccccccchhhhhccccccee--------EEEecCCcccccCCCcCC
Q 005000 646 ERAVYQHSEKLA-MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE--------VIVRDKTRFHHFKHGSCS 715 (720)
Q Consensus 646 ~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~--------~~~~d~~~~h~~~~g~cs 715 (720)
.+.+-. -|+.| ..+.+.|..++.-+.+..-....|+-.++.+.-..|..+. .|.-+ +..|-|..|.-|
T Consensus 670 ~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~-~~~~~f~~~d~~ 746 (857)
T PLN03077 670 HRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK-GKVHAFLTDDES 746 (857)
T ss_pred cCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC-CEEEEEecCCCC
Confidence 222111 12211 2345555555554444444566788888888776554443 33222 467888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.4e-67 Score=593.84 Aligned_cols=508 Identities=19% Similarity=0.250 Sum_probs=450.9
Q ss_pred CCChhHhhHHhcccccccCChHHHHHHhccCCCCCcch-----HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHH
Q 005000 45 LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL-----WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119 (720)
Q Consensus 45 ~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~-----~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 119 (720)
.++...+..+++. +.++|++++|+++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~-l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNR-LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHH-HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4566778888888 888999999999999998765544 45667779999999999999998864 8999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhCC
Q 005000 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY----KDDVVTWNAMFSGYKRVK 195 (720)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 195 (720)
.++.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999887 478999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005000 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE--CKIVPNLILENALTDMYAACGEMGFALEI 273 (720)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (720)
++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++|+++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 67889999999999999999999888888
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005000 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353 (720)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 353 (720)
|++|.+.+. .++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 602 f~~M~e~gi---------------------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 602 YQMIHEYNI---------------------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred HHHHHHcCC---------------------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 888766443 45778899999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHcCC
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML----RKDKFTWTAMIVGLAINGH 429 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 429 (720)
++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999994 6899999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH----hcC------
Q 005000 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG----RAG------ 499 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g------ 499 (720)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.||..+|++++.++. +++
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999996 7899999999999987643 222
Q ss_pred -------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHhHhh
Q 005000 500 -------------HLNEALEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 500 -------------~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~ 562 (720)
..++|..+|++| ++.||..||++++.++.+.+..+.+..+++.+.. -.+.+..+|..|++.+.
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 346899999999 7899999999999887788888888888876543 24556789999999873
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCc
Q 005000 563 ACNRWDNFRELRQMILDRGIKKTPG 587 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~~~~~~~~ 587 (720)
+. .++|..+++.|.+.|+.++..
T Consensus 894 ~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cC--hHHHHHHHHHHHHcCCCCCcc
Confidence 22 368999999999999987663
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-63 Score=565.23 Aligned_cols=491 Identities=18% Similarity=0.255 Sum_probs=426.4
Q ss_pred ccChHHHHHHHHHHHHhCC-CCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHH
Q 005000 26 CESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL 104 (720)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 104 (720)
++++..+.++...|.+.|+ .++...++.++.. |.+.|.+++|.++|+.|+.||..+||.+|.+|++.|++++|.++|+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~-~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH-HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4789999999999999996 5677888899999 9999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCC
Q 005000 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY----KDD 180 (720)
Q Consensus 105 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~ 180 (720)
+|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.++|+.|. .||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 489
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHH
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGEMER--KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 258 (720)
.++||+||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999999986 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHH
Q 005000 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338 (720)
Q Consensus 259 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (720)
.+|++.|++++|.++|++|...+. .||..+|+++|.+|++.|++++|.++|++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv---------------------------~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGV---------------------------KPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999998875332 45666777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc----CCCH
Q 005000 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML----RKDK 414 (720)
Q Consensus 339 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~ 414 (720)
|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777773 4677
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-----------------------cCChhhHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH-----------------------TGMVDEGREY 471 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-----------------------~g~~~~a~~~ 471 (720)
.+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ .+..++|..+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 77777777777777777777777777777777777777777765432 1224679999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
|++|. +.|+.||..+|+.++..+.+.+..+.+..+++.|. ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 835 f~eM~-~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 835 YRETI-SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHH-HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99997 68999999999999999999999999999999884 556789999999998433 468999999998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.3e-64 Score=567.41 Aligned_cols=431 Identities=22% Similarity=0.397 Sum_probs=400.9
Q ss_pred ccchhHHhccc---ChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcC
Q 005000 17 TPLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93 (720)
Q Consensus 17 ~~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~ 93 (720)
..+..++++|. ....+.++|..+.+.|+.||++++|.|+.+ |+++|++++|+++|++|++||+++||+||.+|++.
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~-y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~ 202 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM-HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH-HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC
Confidence 34777888875 578899999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005000 94 DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173 (720)
Q Consensus 94 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 173 (720)
|++++|+++|++|.+.|+.||..||+.++++|++.|+.+.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 282 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHH
Q 005000 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253 (720)
Q Consensus 174 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 253 (720)
++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.||..+
T Consensus 283 ~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred HhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHH
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 333 (720)
+++|+++|+++|++++|.++|++|. ++|.++||+||.+|++.|+.++|+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~-------------------------------~~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP-------------------------------RKNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------CCCeeeHHHHHHHHHHcCCHHHHH
Confidence 9999999999988888888887655 456688889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH-cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc-C
Q 005000 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-R 411 (720)
Q Consensus 334 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~ 411 (720)
++|++|.+.|+.||..||+.++.+|++.|.+++|.+++..|.+ .|+.|+..+|+.++++|++.|++++|.++|++|. .
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~ 491 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999976 6999999999999999999999999999999985 5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCC
Q 005000 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482 (720)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 482 (720)
|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|. +.|+.
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g~~ 560 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKGLS 560 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcCCc
Confidence 6888888888888888888888888888764 4554 4578888888888888888888888886 55664
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-31 Score=314.28 Aligned_cols=550 Identities=12% Similarity=0.060 Sum_probs=385.2
Q ss_pred hhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCc
Q 005000 20 ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSH 96 (720)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~ 96 (720)
..++...+....+......+++... .+......+... +.+.|++++|...|+.+.. .+...|+.+...+.+.|++
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASI-QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 3444455677888888877777643 345556666666 7788888888888876542 3556788888888888888
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 005000 97 KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 97 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 176 (720)
++|.++|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+.... .......++..|.+.|++++|.++++.+
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888887653 224455666667777788888888888888775532 3344556677778888888888887765
Q ss_pred CC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHH
Q 005000 177 YK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253 (720)
Q Consensus 177 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 253 (720)
.. .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..+
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 535 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRA 535 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 43 355677777888888888888888888777643 2234456666677777788888888888777664 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHHHhcC
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVN 327 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 327 (720)
+..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 77777777778888888877777643 2445666777777777888888777777653 24556777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 407 (720)
++++|+..|+++.+.. +.+...+..+...+...|+++.|..++..+.+.. +.+...+..++..+.+.|++++|.++++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887777777653 3345566667777777777777777777776653 4456667777777777777777777777
Q ss_pred hccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc
Q 005000 408 EMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484 (720)
Q Consensus 408 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 484 (720)
.+.. .+...|..+...+...|++++|++.|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~ 769 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPND 769 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 7743 25556667777777777777777777777764 344456666777777777777777777776532 3445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 666777777777777777777777776 223 356667777777777777 66777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005000 563 ACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~~~ 582 (720)
..|++++|.+.++++.+.+.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777766543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-30 Score=309.97 Aligned_cols=542 Identities=13% Similarity=0.076 Sum_probs=406.2
Q ss_pred ccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCC---CCCcchHHHHHHHHHcCCCchHHHHH
Q 005000 26 CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLI 102 (720)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~---~~~~~~~n~li~~~~~~g~~~~A~~l 102 (720)
.++.+.+......+++.+... ...+..+-.. +...|+++.|...|+... +.+...+..+...+.+.|++++|+..
T Consensus 274 ~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSAPEY-LPALLLAGAS-EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhCCCc-hhHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 356777777777776655321 1122222333 567788888888887653 23455677777888888888888888
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 005000 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---D 179 (720)
Q Consensus 103 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 179 (720)
+..+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|+.++|.+.|+.... .
T Consensus 352 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 352 LSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 88887654 3456677777788888888888888888887754 33556677777888888888888888876543 2
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHH
Q 005000 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259 (720)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 259 (720)
+...+..++..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|.+.+..+.+.. +.+...+..+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 3445667777888888888888888888764 34566677888888888888888888888887754 335566777888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHH
Q 005000 260 MYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREAL 333 (720)
Q Consensus 260 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 333 (720)
.+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++... +...+..++..|...|++++|+
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888887754 35667788888888888888888888877433 4456777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC--
Q 005000 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-- 411 (720)
Q Consensus 334 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 411 (720)
.+++++.... +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8888887653 5566777888888888888888888888887654 44566777888888888888888888887743
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHH
Q 005000 412 -KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490 (720)
Q Consensus 412 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 490 (720)
.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+...+..
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~ 741 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIK 741 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHH
Confidence 356788888888888888888888888888764 34556677777788888888888888888762 3455577777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
++.+|.+.|++++|.+.++++ ...| +..++..+...|...|+.++|...++++++..|+++..+..++.++...|+ +
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 888888888888888888776 3333 667777888888888888888888888888888888888888888888888 7
Q ss_pred HHHHHHHHHHhC
Q 005000 569 NFRELRQMILDR 580 (720)
Q Consensus 569 ~a~~~~~~m~~~ 580 (720)
+|.+.++++.+.
T Consensus 821 ~A~~~~~~~~~~ 832 (899)
T TIGR02917 821 RALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhh
Confidence 788888877664
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.9e-33 Score=234.24 Aligned_cols=106 Identities=59% Similarity=1.019 Sum_probs=97.0
Q ss_pred cccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhh--------hhhhhhhHHHHHH
Q 005000 587 GCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK--------ERAVYQHSEKLAM 658 (720)
Q Consensus 587 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~--------~~~~~~~~e~la~ 658 (720)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899887 9999999999998 344467788999999999998888765 5689999999999
Q ss_pred HHHhhcCCCCCcEEEEccc-ccccccchhhhhcccccceeEEEecCCcccccC
Q 005000 659 AFGLISSGPGVTIRIVKNL-RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710 (720)
Q Consensus 659 ~~~~~~~~~~~~~~~~~nl-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 710 (720)
||||+++ ||+||+ |||+|||+++|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=9.9e-23 Score=242.66 Aligned_cols=541 Identities=11% Similarity=0.072 Sum_probs=319.7
Q ss_pred cChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC--CCcc-hH----------------HHHH
Q 005000 27 ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR--PSVC-LW----------------NTMI 87 (720)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~-~~----------------n~li 87 (720)
.+.+.+++....+...-. .|+.+...+... +.+.|+.++|.+.+++..+ |+.. .+ -.+.
T Consensus 42 ~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~-~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDP-NNPDVIAARFRL-LLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred CChHHHHHHHHHHHccCC-CCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 356667777776665532 246667777777 7899999999999988753 3322 22 2334
Q ss_pred HHHHcCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005000 88 KGYSRIDSHKNGVLIYLDMLKSDVRPDNY-TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166 (720)
Q Consensus 88 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 166 (720)
..+.+.|++++|++.|+.+.+.+ +|+.. ............++.++|.+.++.+++.. +.+...+..+...+...|+.
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 46888999999999999998754 23322 11111122234589999999999999865 44667788899999999999
Q ss_pred HHHHHHHhcCCCCCe------eeH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005000 167 DMARGIFDVSYKDDV------VTW-----------------NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223 (720)
Q Consensus 167 ~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 223 (720)
++|.+.|+++..... ..| ...+..+-.....+.|...+..+......|+... ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 999999987643211 011 1111111111122233333333332222222111 1122
Q ss_pred HHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCc---hhHHHH----------
Q 005000 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--KDV---ISWTAI---------- 288 (720)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 288 (720)
..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 33445566666666666666542 22455566666666666666666666665543 111 112111
Q ss_pred --HHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--------
Q 005000 289 --VTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL-------- 355 (720)
Q Consensus 289 --i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-------- 355 (720)
...+.+.|++++|+..|++.... +...+..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 22345566666666666655432 33445555666666666666666666665532 11222222222
Q ss_pred ----------------------------------HHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 356 ----------------------------------TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 356 ----------------------------------~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
..+...|++++|...+..+++.. +.+..++..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 23334455555555555555543 2234445555555666666666
Q ss_pred HHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH---------HHHHHHHHHHhcCChhhHH
Q 005000 402 AQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV---------TYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 402 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~ 469 (720)
|...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|.
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666655532 1 33334334344445555555555555433221111111 1123344556667777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
++++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..+...+...|++++|+..++++++..
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 66641 2345556677888888888888888888887 4455 57788888888888888888888888888888
Q ss_pred CCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|+++..+..++.++...|++++|.++++.+....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888888888876643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5e-22 Score=236.65 Aligned_cols=544 Identities=11% Similarity=0.016 Sum_probs=399.1
Q ss_pred HHhcccChHHHHHHHHHHHHhCCCCChhHh-hHHhcccccccCChHHHHHHhccCCC--C-CcchHHHHHHHHHcCCCch
Q 005000 22 PIETCESMHQLKQIHSQTIKLGLLTNPTVQ-NKLVTFCCSEKGDMKYACKVFRKIPR--P-SVCLWNTMIKGYSRIDSHK 97 (720)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ll~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~n~li~~~~~~g~~~ 97 (720)
++..-+..+.+.+.+..+++... ++.... ..+... ....|+.++|.+.|+++.. | +...+..+...+.+.|+++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~-~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLV-AKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHH-hhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 45555678888888888876543 232211 111122 2346899999999988763 3 4556888889999999999
Q ss_pred HHHHHHHHhHhCCCC----------------CCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005000 98 NGVLIYLDMLKSDVR----------------PDNY---TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158 (720)
Q Consensus 98 ~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 158 (720)
+|++.|+++.+.... ++.. .+...+..+-.......+...+....+....|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 999999998754210 0000 11111222222223445555555544433233322 223456
Q ss_pred HHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhhH------------HHH
Q 005000 159 TYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTI------------VLV 222 (720)
Q Consensus 159 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~------------~~l 222 (720)
.+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 77889999999999987644 367789999999999999999999999988754221 11111 112
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHH
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVD 299 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (720)
...+.+.|++++|...++.+++.. +.+...+..+..+|...|++++|.+.|++..+ .+...+..+...|. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 345678999999999999999974 34667788899999999999999999999875 34556666777664 56789
Q ss_pred HHHHHHhhCCCCC------------ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 300 MARQYFDQMPERD------------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 300 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
+|...++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876432 2235567788889999999999999998863 22456677788889999999999
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC----H---------HHHHHHHHHHHHcCChHHHH
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD----K---------FTWTAMIVGLAINGHGDKSL 434 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~ 434 (720)
...++.+.+.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999988754 3455555566667788999999999999885421 1 11234566788999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005000 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM 513 (720)
Q Consensus 435 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 513 (720)
++++. .+++...+..+...+...|++++|+..|+.+.+. -+.+...+..++.+|...|++++|++.++.. ..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99872 2344456777888899999999999999998732 2335788889999999999999999999987 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 514 KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE------AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 514 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.| +...+..+..++...|++++|...++++++..|+++ ..+..++.++...|++++|.+.++....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 466778888889999999999999999999877654 3566779999999999999999888753
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.1e-19 Score=206.75 Aligned_cols=499 Identities=13% Similarity=0.064 Sum_probs=338.1
Q ss_pred ccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 005000 61 EKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137 (720)
Q Consensus 61 ~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 137 (720)
..|++++|...|+...+ .+..++..|...|.+.|++++|+..+++..+.. |+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999987542 346678889999999999999999999998854 5555555555333 888899999
Q ss_pred HHHHHHhCCCCChhHHHHHHHH--------HHhcCChHHHHHHHhcCCCCC--eeeHH-HHHHHHHhCCChhHHHHHHHH
Q 005000 138 HCHVLKFGFDSSVFVQNALIST--------YCLCGEVDMARGIFDVSYKDD--VVTWN-AMFSGYKRVKQFDETRKLFGE 206 (720)
Q Consensus 138 ~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~ 206 (720)
++++++... .+..++..+... |.+.+....|++ .....++ ..... .+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999998653 344555555554 777777777776 3333333 33333 347899999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHhc-CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C
Q 005000 207 MERKGVLPTSVTIVLVLSACAK-LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-----K 280 (720)
Q Consensus 207 m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~ 280 (720)
+.+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.++++++.. +
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9988643 33335555556666 466 666666442 3346888889999999999999999999988864 2
Q ss_pred CchhHHH------------------------------HHHHHHh------------------------------------
Q 005000 281 DVISWTA------------------------------IVTGYIN------------------------------------ 294 (720)
Q Consensus 281 ~~~~~~~------------------------------li~~~~~------------------------------------ 294 (720)
+..+|-- ++.-+.+
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 2222211 1222233
Q ss_pred ---------------------------cCCHHHHHHHHhhCCCC--Cc----cchHHHHHHHHhcCC---hhHHHHH---
Q 005000 295 ---------------------------RGQVDMARQYFDQMPER--DY----VLWTAMIDGYLRVNR---FREALTL--- 335 (720)
Q Consensus 295 ---------------------------~g~~~~A~~~f~~~~~~--~~----~~~~~li~~~~~~g~---~~~A~~~--- 335 (720)
.|+.++|.++|+..... +. ..-+-++..|.+.+. ..+++.+
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 33444444444443321 11 112233344444333 2222211
Q ss_pred -------------------HHHHHH-CCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 336 -------------------FREMQT-SNIRP---DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 336 -------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
+..... .+..| +...+..+..++.. +..+.|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 000000 01111 23333333333333 55556666555555433 443333334445
Q ss_pred hhhcCCHHHHHHHHHhccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHH
Q 005000 393 YCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 469 (720)
+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. |+. ..+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 5688999999999987743 344566777778888999999999999988753 444 33333444555679999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
..+++.. .+.|+...|..+..++.+.|++++|++.+++. ...| +...++.+..++...|++++|+..++++++++
T Consensus 597 ~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999886 44678889999999999999999999999987 5667 56677888889999999999999999999999
Q ss_pred CCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|+++..+..++.+|...|++++|...+++..+..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999887643
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.9e-19 Score=201.49 Aligned_cols=538 Identities=10% Similarity=-0.007 Sum_probs=375.7
Q ss_pred cChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC--CCcchHHHHHHHHHcCCCchHHHHHHH
Q 005000 27 ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR--PSVCLWNTMIKGYSRIDSHKNGVLIYL 104 (720)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~li~~~~~~g~~~~A~~l~~ 104 (720)
++...+......+++..... ..+...|... |.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..+|+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~-yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEA-YRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 46777888888887776543 7777888888 9999999999999987643 3323333333333 77777778887
Q ss_pred HhHhCCC------------------------------------CC--CcccHHHH-HHHHhccCChHHHHHHHHHHHHhC
Q 005000 105 DMLKSDV------------------------------------RP--DNYTFPFL-LKGFTRDIAVEFGKELHCHVLKFG 145 (720)
Q Consensus 105 ~m~~~g~------------------------------------~p--~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g 145 (720)
++..... .| +..+.... .+.+...++++.+..++..+.+.+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 7765431 11 12222222 455666777777888888877766
Q ss_pred CCCChhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHhhHHHH-
Q 005000 146 FDSSVFVQNALISTYCL-CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLV- 222 (720)
Q Consensus 146 ~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~l- 222 (720)
. .+..-...|..+|.. .++ +.|..++....+.|...+..+...|.+.|+.++|.++++++...-.. |+..++.-.
T Consensus 213 p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 213 T-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred C-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 3 334445566667776 366 77777766544567788889999999999999999999987654322 333333222
Q ss_pred -----------------------------HHHHhcCCCchHHHHHHH-----------------------------HHHH
Q 005000 223 -----------------------------LSACAKLKDLDVGKRAHR-----------------------------YVKE 244 (720)
Q Consensus 223 -----------------------------l~~~~~~~~~~~a~~~~~-----------------------------~~~~ 244 (720)
+..+.+.++++.+.++.. .+.+
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 222333333433333311 1111
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-C----chhHHHHHHHHHhcCC---HHHHHHH-----------
Q 005000 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-K-D----VISWTAIVTGYINRGQ---VDMARQY----------- 304 (720)
Q Consensus 245 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-~----~~~~~~li~~~~~~g~---~~~A~~~----------- 304 (720)
. .+.+....--+.-...+.|+.++|.++|+.... + + ...-+-++..|.+.+. ..++..+
T Consensus 371 ~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 371 Q-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred c-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 1 011222222233344567889999999988765 2 2 2233356677766655 2222222
Q ss_pred --------------HhhCCC---C--CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 005000 305 --------------FDQMPE---R--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365 (720)
Q Consensus 305 --------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 365 (720)
+..... . +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHH
Confidence 222221 2 45567888887776 8999999988888765 467665444555567899999
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM---IVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.|...+..+... +|+...+..+...+.+.|++++|...|+...+.++..++.. .......|++++|+..|++..+
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999987654 34445566778889999999999999998865543333333 3334455999999999999997
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 005000 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIV 519 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~ 519 (720)
. .|+...+..+..++.+.|++++|...+++... ..| +...++.+...+...|++++|++.+++. ...| +...
T Consensus 605 l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 605 I--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred h--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5 67788899999999999999999999999863 345 5678888999999999999999999987 5566 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+++.-...+
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999999999999999998776655443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4e-20 Score=186.30 Aligned_cols=447 Identities=13% Similarity=0.126 Sum_probs=323.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005000 85 TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164 (720)
Q Consensus 85 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 164 (720)
.|..-..+.|++++|.+--...-+.+ +.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34445567788888877655443333 2233334334444555555555444433333322 223456777777777778
Q ss_pred ChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HhcCCCchHHHHHHH
Q 005000 165 EVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA-CAKLKDLDVGKRAHR 240 (720)
Q Consensus 165 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~ 240 (720)
++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+.. ....|++++|...+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 88888777776543 34567777777777777777777777776653 4554433322222 223455555555555
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---cchH
Q 005000 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY---VLWT 317 (720)
Q Consensus 241 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~ 317 (720)
+.++.. |. =.+.|+.|...+-..|++-.|+..|++...-|+ .+|-
T Consensus 209 kAi~~q--p~------------------------------fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYi 256 (966)
T KOG4626|consen 209 KAIETQ--PC------------------------------FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYI 256 (966)
T ss_pred HHHhhC--Cc------------------------------eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHh
Confidence 554432 11 134555555555566666666666666554433 4678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPD-EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
.|...|-..+.+++|+..|.+.... .|+ ...+..+...|-..|.++.|...++..++.. +.-...|+.|..++-..
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDK 333 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhc
Confidence 8888888999999999988887754 554 4566667777788999999999999888764 33467899999999999
Q ss_pred CCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHH
Q 005000 397 GDVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 397 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
|++.+|...+++... + ...+.+.|...|...|..++|..+|....+ +.|.- ..++.|...|-..|++++|+..+
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 999999999998853 2 466888999999999999999999999887 56665 57889999999999999999999
Q ss_pred HHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 473 ADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 473 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
++.. .++|+ ...|+.|...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.+...|++.+|+..|+.+++++|+
T Consensus 412 keal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 412 KEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9875 67887 578999999999999999999999987 67775 568899999999999999999999999999999
Q ss_pred CcchHHHHHhHhhhcCChhHHHHHHH
Q 005000 550 NEAVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
.+.+|..++..+.-..+|.+-.+.++
T Consensus 489 fpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred CchhhhHHHHHHHHHhcccchHHHHH
Confidence 99999999988887788877444333
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-18 Score=174.82 Aligned_cols=357 Identities=12% Similarity=0.126 Sum_probs=278.3
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--hhH-HHHHHHH
Q 005000 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV--ISW-TAIVTGY 292 (720)
Q Consensus 216 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~-~~li~~~ 292 (720)
..+|..+.+.+-..|+++.|...++.+++.... .+..|..+..++...|+.+.|.+.|.+..+-|+ ... +.+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 345555555555555555555555555554211 344555555556666666666665555444222 211 2233333
Q ss_pred HhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 005000 293 INRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD-EFTIVSILTACANLGALELGE 368 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 368 (720)
-..|++++|...+.+..+. -.+.|+.|...+-.+|+...|+..|++..+. .|+ ...|..+-..+...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 4457777777776665443 3578999999999999999999999999874 555 456777888888888888888
Q ss_pred HHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005000 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445 (720)
Q Consensus 369 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 445 (720)
..+..+.... +....++..|...|...|.++-|+..+++..+. =...|+.|..++-..|+..+|.+.+.+.+..
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-- 349 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-- 349 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 8877776643 445677888999999999999999999998643 3579999999999999999999999999884
Q ss_pred CCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 005000 446 IPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWG 521 (720)
Q Consensus 446 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~ 521 (720)
.|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|...+++. .++|+ ..+++
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 5655 578889999999999999999999875 45565 567889999999999999999999997 78896 56899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.+...|...|+.+.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|+.-++...+-.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999887643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.9e-17 Score=185.44 Aligned_cols=416 Identities=12% Similarity=-0.003 Sum_probs=262.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCch
Q 005000 156 LISTYCLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233 (720)
Q Consensus 156 li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 233 (720)
+...|.+.|++++|.+.|++... |+...|..+..+|.+.|++++|++.+....+.. +.+...+..+..++...|+++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34445555555555555554322 344455555555556666666666665555432 112334555555555666666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 005000 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 313 (720)
+|..-+..+...+...+... ..++.-+........+...++.- ..+..++..+.. |........+..-++...+.+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccccc
Confidence 65555544433321111111 11111111111112223333221 122223332222 2221111111111111111111
Q ss_pred c---chHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH
Q 005000 314 V---LWTAMIDGY---LRVNRFREALTLFREMQTSN-IRPD-EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385 (720)
Q Consensus 314 ~---~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 385 (720)
. .+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++.. +.....
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 1 111111111 23468899999999988765 2343 3456666666778899999999999888764 334567
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTH 461 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 461 (720)
+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+..++..
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHH
Confidence 78888999999999999999998753 36788999999999999999999999999885 454 4567778888999
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCC
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNS-I-------VWGALLGACRVHRD 532 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~ 532 (720)
.|++++|...|++.... .+.+...|+.+..+|...|++++|.+.|++. .+.|+. . .++..+..+...|+
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999998632 2345788899999999999999999999986 444421 1 12222233445699
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.9e-18 Score=182.35 Aligned_cols=268 Identities=15% Similarity=0.103 Sum_probs=186.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPD---EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 445555555555555556555555554322111 1234444555555566666666665555432 334556666777
Q ss_pred hhhhcCCHHHHHHHHHhccCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc
Q 005000 392 MYCKCGDVEKAQRVFREMLRKD--------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHT 462 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 462 (720)
.|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+..|+++.+.. |+ ...+..+...+...
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHC
Confidence 7777777777777777664321 1234566777788889999999999888753 44 45677777888889
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAK 541 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (720)
|++++|.++|+++... +.......++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++
T Consensus 228 g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988632 21222456788889999999999999999987 456777777888899999999999999999
Q ss_pred HHHhcCCCCcchHHHHHhHhhh---cCChhHHHHHHHHHHhCCCccCCc
Q 005000 542 QILELDPDNEAVYVLLCNIYAA---CNRWDNFRELRQMILDRGIKKTPG 587 (720)
Q Consensus 542 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 587 (720)
++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 307 ~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 307 EQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999876 44444444432 568999999999999999988886
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-17 Score=177.99 Aligned_cols=290 Identities=13% Similarity=0.086 Sum_probs=199.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
...|+++.|...+..+++.+ +.+..++..+...|...|++++|..+++.+.......-
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------- 103 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR--------------------- 103 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH---------------------
Confidence 34455556666666655542 12334555555555555555555555555433110000
Q ss_pred hCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----
Q 005000 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND---- 382 (720)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---- 382 (720)
......+..++..|.+.|++++|+.+|+++.+.. +++..++..+...+...|+++.|.+.+..+.+.+..+.
T Consensus 104 ---~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (389)
T PRK11788 104 ---EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI 179 (389)
T ss_pred ---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence 0001235556666666666666666666666542 33455566666666666666666666666665442221
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
...+..+...|.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|+++|+++...+..+...++..+..++
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 123456777888999999999999988532 46678888899999999999999999998764322245678889999
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRV---HRDAEM 535 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~ 535 (720)
...|++++|.+.++++.+ ..|+...+..++..|.+.|++++|.++++++ ...|+..+++.++..+.. +|+.++
T Consensus 260 ~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 260 QALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchh
Confidence 999999999999999863 3577777788999999999999999999876 667999999988887664 568888
Q ss_pred HHHHHHHHHh
Q 005000 536 AEMAAKQILE 545 (720)
Q Consensus 536 a~~~~~~~~~ 545 (720)
+...++++++
T Consensus 337 a~~~~~~~~~ 346 (389)
T PRK11788 337 SLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=7.5e-16 Score=172.66 Aligned_cols=414 Identities=11% Similarity=0.015 Sum_probs=259.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCh
Q 005000 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQF 197 (720)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 197 (720)
.-..+.+.|+++.|...|..+++. .|+...|..+...|.+.|++++|.+.++...+ .+...|..+..+|...|++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 334445566666666666666553 34555566666666666666666666654332 2344566666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005000 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277 (720)
Q Consensus 198 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 277 (720)
++|+.-|......+-. +......++..... ..+........+.. +++...+..+.+ |........+..-++..
T Consensus 211 ~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 6666666544332211 11111111111111 11112222222221 111111111111 11111111111111111
Q ss_pred CCCCc---hhHHHHHHH---HHhcCCHHHHHHHHhhCCCC------CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005000 278 KNKDV---ISWTAIVTG---YINRGQVDMARQYFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345 (720)
Q Consensus 278 ~~~~~---~~~~~li~~---~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (720)
.+.+. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~ 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--D 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 11111 111111111 12246677888887766532 3456788888888899999999999988875 4
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHH
Q 005000 346 PD-EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMI 421 (720)
Q Consensus 346 p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li 421 (720)
|+ ...+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++..+. +...|..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 44 5567777777888899999999998888764 456778888999999999999999999988532 566788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH--------HHHHHHH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE--------AHYGCMV 492 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~li 492 (720)
..+.+.|++++|+..|++.+.. .|+ ...+..+..++...|++++|+..|+.... +.|+. ..++...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHH
Confidence 8999999999999999998874 444 56788888899999999999999998762 33321 1122223
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+...
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 3445579999999999986 56664 56788999999999999999999999999887643
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=4.7e-16 Score=177.46 Aligned_cols=402 Identities=10% Similarity=-0.006 Sum_probs=252.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005000 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224 (720)
Q Consensus 148 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 224 (720)
.+.....-.+......|+.++|.+++..... .+...+..+...+.+.|++++|+++|++..... +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444445556666777888888888876543 233347777777888888888888888776642 223444555666
Q ss_pred HHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHH
Q 005000 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMA 301 (720)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 301 (720)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++... +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6677778888888777777762 23444 666777777777777777777766542 233344445555555555555
Q ss_pred HHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCcH---HHHHHHHHH
Q 005000 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC-----ANLGAL---ELGEWVKTY 373 (720)
Q Consensus 302 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~---~~a~~i~~~ 373 (720)
.+.++.... ++.....+ .. ......+... ...+.+ +.|.+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l--------~~-------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDL--------EA-------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHhCCC-CHHHHHHH--------HH-------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 555554443 21100000 00 0000011110 111122 445555555
Q ss_pred HHHc-CCCCChh-H-hhH---HhhhhhhcCCHHHHHHHHHhccCCC---H-HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 374 IDKN-KVKNDIF-V-GNA---LIDMYCKCGDVEKAQRVFREMLRKD---K-FTWTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 374 ~~~~-~~~~~~~-~-~~~---li~~y~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
+.+. ...|+.. . ..+ .+..+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++...
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5532 1122211 1 011 1223345678888888888876432 1 11122456788888888888888887764
Q ss_pred CCCC---ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC----------CCcc---HHHHHHHHHHHHhcCCHHHHHHH
Q 005000 444 SIIP---DEVTYVGVLSACTHTGMVDEGREYFADMTIQHG----------IEPN---EAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 444 g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
.... .......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3111 123455566677888888888888888763211 1122 23456677888999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++++ ...| +...+..+...+...|++++|+..++++++++|++...+..++..+.+.|+|++|.++++.+.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9987 3445 67788888999999999999999999999999999999999999999999999999999988764
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=5.5e-16 Score=176.88 Aligned_cols=416 Identities=10% Similarity=0.003 Sum_probs=291.4
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---CCCCeeeHHHHHH
Q 005000 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS---YKDDVVTWNAMFS 189 (720)
Q Consensus 113 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~ 189 (720)
.++.-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|+.. ...+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355556667777888999999999999988733 445557899999999999999999999984 3345667888889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 005000 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 269 (720)
.+...|++++|+..+++.... .|+...+..+..++...|+.+.|...++.+++.... +..++..+..++.+.|..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999876 343333777888888999999999999999997543 56666778889999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCCh---hHHHHHHHHHHHC-CCC
Q 005000 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF---REALTLFREMQTS-NIR 345 (720)
Q Consensus 270 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~ 345 (720)
|.+.++.... ++..... +. ...+....+. .+.......+++ ++|+..++.+.+. ...
T Consensus 169 Al~~l~~~~~-~p~~~~~-l~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRD-LE-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHhCCC-CHHHHHH-HH-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999998776 2211000 00 0000000000 000011112223 5666666666643 122
Q ss_pred CCHH-HHH----HHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC------
Q 005000 346 PDEF-TIV----SILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD------ 413 (720)
Q Consensus 346 p~~~-t~~----~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------ 413 (720)
|+.. .+. ..+.++...++.+.|...++.+.+.+.+ |+ .....+...|...|++++|+..|+++...+
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2221 111 1123334556777777777776665422 22 122224667777888888888888764332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCh---HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 414 -KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-----------IIPDE---VTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 414 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|++++|++.++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345556667788888888888888887642 12342 24455667888999999999999998733
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3446788889999999999999999999997 56675 66777788889999999999999999999999987543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.5e-15 Score=169.61 Aligned_cols=353 Identities=9% Similarity=-0.017 Sum_probs=221.7
Q ss_pred hcCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHH
Q 005000 162 LCGEVDMARGIFDVSYK------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 235 (720)
+..+++.-.-.|...++ .+..-.-.++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 44555555555554433 123334455667778888888888888877764333 23344444555567888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 005000 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315 (720)
Q Consensus 236 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 315 (720)
.+.++.+++... .+...+..+...+.+.|++++|...|++....+ ..+...
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNSQI 146 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHH
Confidence 888888777632 245566666777777777777777776654311 112334
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
|..+...+...|++++|...++.+......+ ...+.. +..+...|+++.|...+..+.+....++......+...+.+
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 5555555566666666666665554432111 111111 22345556666666665555544322233333444566667
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhh
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDK----SLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 467 (720)
.|++++|...|+.... .+...+..+...+...|++++ |+..|++..+. .|+. ..+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 7777777777776643 245667777777777787775 78888888774 4443 577777788888888888
Q ss_pred HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 468 GREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVW-GALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
|...+++... ..| +...+..+...|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...+++++
T Consensus 303 A~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888763 234 3556667788888888888888888877 355654443 334567788888888888888888
Q ss_pred hcCCCCc
Q 005000 545 ELDPDNE 551 (720)
Q Consensus 545 ~~~p~~~ 551 (720)
+..|++.
T Consensus 380 ~~~P~~~ 386 (656)
T PRK15174 380 QARASHL 386 (656)
T ss_pred HhChhhc
Confidence 8888753
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.8e-15 Score=156.18 Aligned_cols=509 Identities=14% Similarity=0.119 Sum_probs=354.0
Q ss_pred ccCChHHHHHHhccCC------CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCc-ccHHHHHHH---HhccCC
Q 005000 61 EKGDMKYACKVFRKIP------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTFPFLLKG---FTRDIA 130 (720)
Q Consensus 61 ~~g~~~~A~~~f~~~~------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~ 130 (720)
..|++..|..+|.... .||+.. .+--++.+.|+.+.|+..|.+.++.+ |+. .++..|--. .-....
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHH
Confidence 4578889999887632 134321 22245567888899999999888754 422 222111111 112334
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC------eeeHHHHHHHHHhCCChhHHHHHH
Q 005000 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD------VVTWNAMFSGYKRVKQFDETRKLF 204 (720)
Q Consensus 131 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~ 204 (720)
+..|.+++...-+.. ..++.+.+.|.+.|.-.|++..+..+.+.+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 566666666665543 4678888999999999999999988887655432 235778889999999999999999
Q ss_pred HHHHHCCCCCCHhh--HHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC----CHHHHHHHHhhcC
Q 005000 205 GEMERKGVLPTSVT--IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG----EMGFALEIFGNIK 278 (720)
Q Consensus 205 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~ 278 (720)
.+.... .||.++ +.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 776654 455544 3456677888999999999999988873 446667777777787765 5677777777776
Q ss_pred CC---CchhHHHHHHHHHhcCC------HHHHHHHHhhC-CCCCccchHHHHHHHHhcCChhHHHHHHHHHHHC---CCC
Q 005000 279 NK---DVISWTAIVTGYINRGQ------VDMARQYFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTS---NIR 345 (720)
Q Consensus 279 ~~---~~~~~~~li~~~~~~g~------~~~A~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 345 (720)
.+ |...|-.+...|-+..- +..|..++..- ....+...|.+...+...|++++|...|...... ...
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 64 45566666555544333 34444444332 2346677899999999999999999999988754 123
Q ss_pred CCH-----HHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHH
Q 005000 346 PDE-----FTIV-SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFT 416 (720)
Q Consensus 346 p~~-----~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~ 416 (720)
+|. .|.. .+....-..++.+.|.+++..+++.. +.-+..|-.|..+....+...+|...++... ..++..
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 333 2222 23334456678899999999988763 2223333333333333467778888888774 447788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHh------------cCChhhHHHHHHHHHHHcCCCc
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTH------------TGMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p 483 (720)
|+.+...|.....+..|.+-|...... -..+|..+..+|.+.|.. .+..++|+++|.++.+ .-+-
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpk 644 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPK 644 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 888888888888888888877665542 234677777777776643 2456778888887762 2234
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMP--MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLCN 559 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 559 (720)
|...-|-+.-.++..|++.+|.++|.+.. ......+|-.+...|...|++-.|+++|+..++.. -+++.....|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 66777778888999999999999998872 22356789999999999999999999999988753 457788889999
Q ss_pred HhhhcCChhHHHHHHHHHHhC
Q 005000 560 IYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 560 ~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++.+.|+|.+|.+........
T Consensus 725 a~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999987766543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1.2e-15 Score=170.51 Aligned_cols=285 Identities=9% Similarity=-0.014 Sum_probs=224.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 005000 290 TGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 366 (720)
.+....|++++|...|+++.. .+...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|+++.
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHH
Confidence 333344444444444444432 245568888889999999999999999998752 3345677778888999999999
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK----DKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
|...+..+...... +...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+
T Consensus 163 A~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 163 AISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999888765432 33334333 3478899999999999987543 334445566788999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhh----HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 005000 443 ASIIPDEVTYVGVLSACTHTGMVDE----GREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP- 515 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p- 515 (720)
.. +.+...+..+..++...|++++ |...|+++.. +.| +...+..+..+|.+.|++++|...+++. ...|
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 63 2244677778889999999986 8999998863 344 5678899999999999999999999987 4556
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+...+..+..++...|++++|...++++++.+|+++..+..++.++...|++++|.+.++...+..
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 466788888999999999999999999999999988777778999999999999999999987654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.7e-14 Score=161.44 Aligned_cols=432 Identities=12% Similarity=0.034 Sum_probs=241.1
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHH---HHHHHhCCChhHHH
Q 005000 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM---FSGYKRVKQFDETR 201 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~ 201 (720)
..+.|+++.|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45788888999999888885533222344 788888888999999998888776644444333 34677778999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005000 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-- 279 (720)
Q Consensus 202 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 279 (720)
++|+++.+... -|...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 123 ely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99998887632 23455556667777888888888888887776 44444554455555455666568888887765
Q ss_pred C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005000 280 K-DVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357 (720)
Q Consensus 280 ~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 357 (720)
| +...+..+...+.+.|-...|.++...-+.- +...+.-+ . .+.|.+. ++.+..|+..-
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~----vr~a~~~~~~~------- 260 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQ----VRMAVLPTRSE------- 260 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHH----Hhhcccccccc-------
Confidence 2 4455666677777777777777766654421 11111100 0 0011111 00000000000
Q ss_pred HhccCcHHHHHHHHHHHHHc-CC-CCChhH-hhH---HhhhhhhcCCHHHHHHHHHhccCC----CHHHHHHHHHHHHHc
Q 005000 358 CANLGALELGEWVKTYIDKN-KV-KNDIFV-GNA---LIDMYCKCGDVEKAQRVFREMLRK----DKFTWTAMIVGLAIN 427 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~-~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~ 427 (720)
-.+..-.+.+..-++.+... +- ++.... ..+ .+-++.+.|+..++++.|+.+... ...+-.++..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 00000112222222222221 11 111111 111 223344556666666666666422 223444555666666
Q ss_pred CChHHHHHHHHHHHHCCC-----CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC----------CCcc---HHHHH
Q 005000 428 GHGDKSLDMFSQMLRASI-----IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG----------IEPN---EAHYG 489 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~ 489 (720)
+++++|+.+|+++..... .++......|.-++...+++++|..+++.+.+... -.|+ ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 666666666666544321 11222234556666666666666666666642111 0111 12333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCCh
Q 005000 490 CMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (720)
.++..+...|++.+|++.++++ ...| |...+..+...++..|.+.+|+..++.+..++|++..+...++..+...|+|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 4555566667777777776666 2334 5666666666667777777777777666666676666666666666666777
Q ss_pred hHHHHHHHHHHh
Q 005000 568 DNFRELRQMILD 579 (720)
Q Consensus 568 ~~a~~~~~~m~~ 579 (720)
++|.++.+.+.+
T Consensus 501 ~~A~~~~~~l~~ 512 (822)
T PRK14574 501 HQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHh
Confidence 777666665544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.2e-14 Score=159.17 Aligned_cols=444 Identities=11% Similarity=0.006 Sum_probs=305.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 005000 83 WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY-TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161 (720)
Q Consensus 83 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 161 (720)
|...|. ..++|++..|++.|++.++.. |+.. ....++..+...|+.++|...++..+. .-+.......++...|.
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHH
Confidence 443333 478999999999999998854 5542 223888888889999999999999882 11122233333456888
Q ss_pred hcCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHH
Q 005000 162 LCGEVDMARGIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 238 (720)
..|++++|.++|+++.+. |...+..++..|...++.++|++.++++... .|+...+..++..+...++...|.+.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 899999999999987653 4566778888999999999999999999875 56666665454444456666669999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchH
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~ 317 (720)
++.+++.. +.+...+..++....+.|-...|.++..+-++- +...+.-+ ..+.|.+..+....+.. +
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~-~-- 259 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR-S-- 259 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc-c--
Confidence 99999984 447788888999999999999999988876531 11111100 01111111111100000 0
Q ss_pred HHHHHHHhcCC---hhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhH
Q 005000 318 AMIDGYLRVNR---FREALTLFREMQTS-NIRPDE-F----TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388 (720)
Q Consensus 318 ~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 388 (720)
..++ .+.|+.-++.+... +-.|.. . ...--+-++...++...+...++.+...+.+....+-.+
T Consensus 260 -------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 -------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0111 23444444444431 111221 1 112234455666677777777777776665545556677
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CC
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK---------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-------------II 446 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~ 446 (720)
+.++|...+++++|..+|..+... +......|.-+|...+++++|..+++++.+.- ..
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 777777777777777777776331 22334567777888888888888888887631 12
Q ss_pred CChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 447 PDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 447 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
||-. .+..++..+...|++.+|++.++.+.. .-+-|......+.+++...|++.+|++.++.. ...| +..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 2333 344456678899999999999999963 33558889999999999999999999999876 4667 45667788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
+.+....+++.+|..+.+++++..|+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 888899999999999999999999998744
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.6e-14 Score=150.17 Aligned_cols=506 Identities=11% Similarity=0.073 Sum_probs=296.7
Q ss_pred hHHHHHHhccCCC--CCcchHHHHHHHH--HcCCCchHHHHHHHHhHhCC--CCCCcccHHHHHHHHhccCChHHHHHHH
Q 005000 65 MKYACKVFRKIPR--PSVCLWNTMIKGY--SRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELH 138 (720)
Q Consensus 65 ~~~A~~~f~~~~~--~~~~~~n~li~~~--~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 138 (720)
+++|.+.|....+ |+-+ --.|..+. ...|++..|+.+|...+... .+||... .+-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 4667776665432 2221 12222332 33567778888887765532 2344432 2234456777777777777
Q ss_pred HHHHHhCCCCChhHHHHHHHHH---Hh---cCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 139 CHVLKFGFDSSVFVQNALISTY---CL---CGEVDMARGIFDVS---YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 139 ~~~~~~g~~~~~~~~~~li~~y---~~---~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
..+.+.. | ...++++..+ .. ...+..+..++... ...|++.-+.|..-|.-.|+++.++.+...+..
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 7777643 3 2222222211 11 12344455555432 234677777777778888888888888777765
Q ss_pred CCCC--CCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---Cchh
Q 005000 210 KGVL--PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK---DVIS 284 (720)
Q Consensus 210 ~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~ 284 (720)
.-.. .-...|-.+.+++-..|+++.|...+-...+......+..+--|..+|.+.|+++.+...|+.+... +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 4211 1123466677777778888888888777766533222333445677888888888888888777652 3445
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHHHH
Q 005000 285 WTAIVTGYINRG----QVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRPDEFTIVS 353 (720)
Q Consensus 285 ~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ 353 (720)
...+...|+..+ ..+.|..+..+..++ |...|-.+...+-+..-+.. +..|... ...+-.+.....+.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 555555666554 456666666665544 44556666555555443333 5555443 33444566667777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc---CCCCCh------hHhhHHhhhhhhcCCHHHHHHHHHhccCCCHH---HHHHHH
Q 005000 354 ILTACANLGALELGEWVKTYIDKN---KVKNDI------FVGNALIDMYCKCGDVEKAQRVFREMLRKDKF---TWTAMI 421 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~---~~~~~~------~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li 421 (720)
+.......|+++.|...+..+... ...++. .+--.|...+-..++.+.|.+.|..+.+..+. .|-.+.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 777777777777777777666544 112222 12233555666667777777877777544322 333333
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH----
Q 005000 422 VGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG---- 496 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~---- 496 (720)
......++..+|...+...... .-.|+..+| +...+.....+..|.+-|..+..+....+|+...-.|.+.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 2222346667777777776653 234444443 333455556666666655555433333456555555555443
Q ss_pred --------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 497 --------RAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 497 --------~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
..+..++|+++|.+. ...| |...-|.+.-.+...|++..|..+|.++.+--.+.+.+|..++.+|..+|+
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 233566777777765 4444 555666666677777888888888888777666667778888888888888
Q ss_pred hhHHHHHHHHHHhC
Q 005000 567 WDNFRELRQMILDR 580 (720)
Q Consensus 567 ~~~a~~~~~~m~~~ 580 (720)
|-.|.++++...++
T Consensus 696 y~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776554
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=3.1e-13 Score=132.16 Aligned_cols=443 Identities=12% Similarity=0.088 Sum_probs=297.7
Q ss_pred cHHHHHH---HHhccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCChHHHHHHHhc----CCCCCe----eeH
Q 005000 117 TFPFLLK---GFTRDIAVEFGKELHCHVLKFGFDSSVFVQN-ALISTYCLCGEVDMARGIFDV----SYKDDV----VTW 184 (720)
Q Consensus 117 t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~----~~~~~~----~~~ 184 (720)
||+.+.. -|.......+|+..++.+++..+-|+.-... .+.+.|.+...+..|.+.++. .+.-+- ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 5555444 3444556677888888888877766654332 344667777888888888753 333222 234
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCC------------CChH
Q 005000 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV------------PNLI 252 (720)
Q Consensus 185 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~ 252 (720)
|.+--.+.+.|+++.|+..|+...+. .||-.+-..++-.+...|+.+..++.|..++..... |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44444678889999999999887765 577776555555666678888888888888764322 2323
Q ss_pred HHHHHHH-----HHHhcC--CHHHHHHHHhhcC----CCCch---hHH------------------HHHHHHHhcCCHHH
Q 005000 253 LENALTD-----MYAACG--EMGFALEIFGNIK----NKDVI---SWT------------------AIVTGYINRGQVDM 300 (720)
Q Consensus 253 ~~~~li~-----~y~~~g--~~~~A~~~~~~~~----~~~~~---~~~------------------~li~~~~~~g~~~~ 300 (720)
..|.-+. -.-+.. +.+++.-.--++. .++-. -|- .-...|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 3332221 111111 1222222112222 22210 010 01122678889999
Q ss_pred HHHHHhhCCCCCccchH----HHHHH-HHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005000 301 ARQYFDQMPERDYVLWT----AMIDG-YLRV-NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374 (720)
Q Consensus 301 A~~~f~~~~~~~~~~~~----~li~~-~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 374 (720)
|.++++-..++|..+-. .|-.. |.+- .++.+|..+-+..+... +-|....+.--+.....|+++.|...+..+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 88888877766544332 22222 2222 34666666655554332 233333333233344578999999999998
Q ss_pred HHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc---cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM---LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 375 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
+...-......|| +.-.+-+.|++++|+..|-++ ...++...-.+.+.|....++.+|++++.+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8766444333443 455677899999999999876 4567777788888999999999999999877654 4445567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-Hh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGAC-RV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~-~~ 529 (720)
+..|...|-+.|+-.+|.+.+-.-- .-++.+.++..-|..-|....-+++|+.+|++. -++|+..-|.-++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 7888889999999999999876532 234557888888888999999999999999998 5889999999988765 67
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
.|++.+|..+++......|+|......|..++...|.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999999999999999999999999888775
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=5.3e-13 Score=129.91 Aligned_cols=427 Identities=17% Similarity=0.187 Sum_probs=271.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHh--ccCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT--RDIAVEFG-KELHCHVLKFGFDSSVFVQNAL 156 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 156 (720)
+.+=|.|+.. ..+|...++.-+|+.|.+.|+..+...-..+++..+ ...++..+ .+.|-.|.+.|-. ...+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 4566777665 557889999999999999998776665555555432 23333222 2233344444422 22232
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHH
Q 005000 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 236 (720)
|.|.+.+ ++-+...+...+|.+||.|+++--..+.|.+++++-.+...+.+..+|+.+|.+-+-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4465544 4444455677899999999999999999999999999998999999999999876533 348
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC-CCCCccc
Q 005000 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERDYVL 315 (720)
Q Consensus 237 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~-~~~~~~~ 315 (720)
++..+|+...+.||..++|+++++..+.|+++.|.+.+-++. .-++++ .+|...+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil------------------------~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQIL------------------------GEMKEIGVEPSLSS 314 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHH------------------------HHHHHhCCCcchhh
Confidence 899999999999999999999999999999988765543211 111111 2455667
Q ss_pred hHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCCC
Q 005000 316 WTAMIDGYLRVNRFRE-ALTLFREMQT----SNIRP----DEFTIVSILTACANLGALELGEWVKTYIDKNK----VKND 382 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~----~~~~ 382 (720)
|..+|..+.+.++..+ |..+..+.+. ..++| |...|.+.+..|.+..+.+.|.+++....... +.|+
T Consensus 315 yh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~ 394 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD 394 (625)
T ss_pred HHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH
Confidence 7777777777666533 4455555443 22332 55678888899999999999999888765421 1222
Q ss_pred ---hhHhhHHhhhhhhcCCHHHHHHHHHhccC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 383 ---IFVGNALIDMYCKCGDVEKAQRVFREMLR----KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 383 ---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
..-|..+....+....++.-...|+.|.. |+..+-..++.+....|.++-.-+++..|+..|-.-+.....-+
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 23455667777777788888888887753 35555566667777778888788888877776643333333333
Q ss_pred HHHHHhcC-Ch--------hh-----HHHHHHHH----HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 005000 456 LSACTHTG-MV--------DE-----GREYFADM----TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM------ 511 (720)
Q Consensus 456 l~a~~~~g-~~--------~~-----a~~~~~~m----~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~------ 511 (720)
+..+++.. .. .. |..+++.. .+...........++..-++.|.|+.++|.+++.-.
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 33333322 11 00 00111100 001122334556677777777788877777776554
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 512 -PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 512 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+..|..-..--+..+....++..+|..+++-+...+
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 222333333344455566666667776666665443
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.9e-12 Score=124.84 Aligned_cols=426 Identities=13% Similarity=0.127 Sum_probs=241.4
Q ss_pred cccchhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhc---ccccccCChHHHHHHhccCC----------------
Q 005000 16 ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT---FCCSEKGDMKYACKVFRKIP---------------- 76 (720)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~---~~y~~~g~~~~A~~~f~~~~---------------- 76 (720)
.++++.+++. +-++.+.-++.+|.+.|.+.+.-+--.|+. . |-...-+-.-++.|-.|.
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~-~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTY-YNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHh-hcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3444444432 234555667777777777666554433332 2 222221111122332222
Q ss_pred -------CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 005000 77 -------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149 (720)
Q Consensus 77 -------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 149 (720)
..+..++..||.++++.-..+.|.++|++-.....+.+..+||.+|.+-. +..++.+..+|+...+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 23444667777777777777777777777666666667777777766543 2333666677777777777
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 150 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.+++|++++..++.|+++.|++. |++++.+|++.|+.|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 77777777777777776666543 567788888889999999998888888877
Q ss_pred CCchH-HHHHHHHHHH----cCCC----CChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 230 KDLDV-GKRAHRYVKE----CKIV----PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 230 ~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
++... +..+...+.. ..+. .|...+...++.+.+..+.+.|.++-.-....+- ++
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N---------------~~- 389 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN---------------WK- 389 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---------------hh-
Confidence 77643 3444444332 1122 2445556666667677777777766554432111 00
Q ss_pred HHHHHhhCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 005000 301 ARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378 (720)
Q Consensus 301 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 378 (720)
.|.. ...+-|..+....++....+.-+.+|+.|+-.-+-|+..+...++.+....+.++-...++..++..|
T Consensus 390 ------~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 390 ------FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 0000 01133556667777777788888888888877777888888888888888888888888877777766
Q ss_pred CCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF---TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 379 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
.........-+....++.. ..|+.. -+.....-++ ..-.+.....-.+|......| ...+.+
T Consensus 464 ht~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~i 528 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCI 528 (625)
T ss_pred hhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHH
Confidence 4433333222222222211 011111 0111110000 000111112223344433333 344555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH---HHHHHhcCCHHHHHHHHHhC
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM---VDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l---i~~~~~~g~~~eA~~~~~~~ 511 (720)
+..+.+.|..++|.++|..+.++.+-.|.....++| ++.-.+......|...++-|
T Consensus 529 a~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 529 AILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 556677788888888877775444445555555543 44455666777777777766
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=3.6e-11 Score=128.30 Aligned_cols=342 Identities=12% Similarity=0.149 Sum_probs=240.2
Q ss_pred HhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhc---cCCCCCcchHHHHHHHHHcCCCchHH
Q 005000 23 IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR---KIPRPSVCLWNTMIKGYSRIDSHKNG 99 (720)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~---~~~~~~~~~~n~li~~~~~~g~~~~A 99 (720)
+-+-++...|..+...+++... .+...|..|-.. |-..|+.+++...+- .+.+.|..-|-.+-....+.|++.+|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3334677888888888888753 244556666666 888888888888763 34455667788888888888889999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHhcCChHHHHHHHhc
Q 005000 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA----LISTYCLCGEVDMARGIFDV 175 (720)
Q Consensus 100 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~ 175 (720)
.-.|.+.++.. ++|-..+---...|-+.|+...|...+.++.....+.|..-.-. .+..|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888754 23433344445567788888889888888888654333333333 34555666777888888876
Q ss_pred CCC-----CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----------------------hHH----HHHH
Q 005000 176 SYK-----DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV----------------------TIV----LVLS 224 (720)
Q Consensus 176 ~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~~----~ll~ 224 (720)
... -+...+|.++..|.+...++.|+.....+......+|.. .|. -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 544 245578899999999999999999998887622222211 111 1222
Q ss_pred HHhcCCCchHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCH
Q 005000 225 ACAKLKDLDVGKRAHRYVKECKI--VPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQV 298 (720)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 298 (720)
+.......+....+...+.+... .-++..+.-+.++|...|++.+|.++|..+.. .+...|-.+...|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 33456666667777777777663 44567888899999999999999999999876 3667899999999999999
Q ss_pred HHHHHHHhhCCCCCccc---hHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 299 DMARQYFDQMPERDYVL---WTAMIDGYLRVNRFREALTLFREMQT--------SNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 299 ~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
++|.+.|+....-++.. --.|...+.+.|++++|++.+..+.. .+..|+..........+.+.|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999987654444 44566788999999999999998642 22344444444445555566655543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=6.8e-11 Score=121.33 Aligned_cols=477 Identities=12% Similarity=0.065 Sum_probs=264.0
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---C
Q 005000 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS---Y 177 (720)
Q Consensus 101 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~ 177 (720)
++++..++. -|+.+ .+=++.....+.+.|+.++..+++.- +.... |.-+|++...++.|.++++.. .
T Consensus 367 RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555543 24433 12333344455555666666666532 22222 233344455566666666533 2
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCC--h
Q 005000 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGE----MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN--L 251 (720)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 251 (720)
..+...|.+-...--++|+.+....++.+ +...|+..+...|..=..+|-..|..-.+..+....+..|++.. .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 34555665555555556666665555543 33445555555555555555555555555555555555554321 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCch----------------------------------hHHHHHHHHHh
Q 005000 252 ILENALTDMYAACGEMGFALEIFGNIKN---KDVI----------------------------------SWTAIVTGYIN 294 (720)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~----------------------------------~~~~li~~~~~ 294 (720)
.+|+.-.+.+.+.+.++-|..+|....+ .+.. .|-.....+-.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 3444445555555555555555544433 2233 34444444445
Q ss_pred cCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005000 295 RGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 371 (720)
.|++..|+.++....+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..--.++..++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 55555555555444322 2334445555555555555555555555442 233333333333333345555555555
Q ss_pred HHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 448 (720)
...++. ++.-...|-.+...|-+.++++.|...|..-.+. .+..|-.+...--+.|+.-.|..++++..-.+ +-|
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 555443 1222344555555555555555555555544322 33455555555555556666666666655543 223
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005000 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528 (720)
Q Consensus 449 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 528 (720)
...|...+..-.+.|+.+.|..+..+... ..+.+...|..-|.+..+.++-..+.+.+++.. -|+.+..++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 44555556666666666666666555542 334445555555555555555555555555543 34555566667778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 597 (720)
...+++.|...|+++++.+|++..++..+-..+.+.|.-++-.+++++.... .|..|..|..+...+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 8889999999999999999999999999999999999999999999887654 355677776555443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=5.4e-13 Score=130.49 Aligned_cols=467 Identities=13% Similarity=0.085 Sum_probs=270.0
Q ss_pred chhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHh-cccccccCChHHHHHHhc----cCCCCC----cchHHHHHHH
Q 005000 19 LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFR----KIPRPS----VCLWNTMIKG 89 (720)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll-~~~y~~~g~~~~A~~~f~----~~~~~~----~~~~n~li~~ 89 (720)
++..+.+-.....+...+..+++..+-|+.-....-+ +. |.+.+.+..|.+.++ +.|.-+ ....|.+.-.
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni-~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNI-HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecce-eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3333333344566777788888888777765543333 44 778889999999874 444322 2245666667
Q ss_pred HHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--------HHHHHHHHH
Q 005000 90 YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV--------QNALISTYC 161 (720)
Q Consensus 90 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--------~~~li~~y~ 161 (720)
+.+.|.++.|+..|+...+. .||-.+-..++-++...|+-+..++.|..++.....+|..- -..|++--.
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998875 47877665666666678899999999999987543332211 111221111
Q ss_pred hcCC--------hHHHHHHH---hcC----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005000 162 LCGE--------VDMARGIF---DVS----YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226 (720)
Q Consensus 162 ~~g~--------~~~A~~~f---~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 226 (720)
+... -..|++.. -.+ ..||-.. -.+-.++.++.-....+..+. -..-...+
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dl--ei~ka~~~ 429 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDL--EINKAGEL 429 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhh--hhhHHHHH
Confidence 1111 11122111 111 1122110 011111111111100000000 00011123
Q ss_pred hcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCHHHH
Q 005000 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA--CGEMGFALEIFGNIKNKDV---ISWTAIVTGYINRGQVDMA 301 (720)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 301 (720)
.+.|+++.|.+++..+.+..-.......|.|-..+.- -.++..|.+.-+.....|- ...+.-.+.-..+|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 4556666666666555554332222222222222222 2234555555444433211 1111111222345667777
Q ss_pred HHHHhhCCCCCccchHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 005000 302 RQYFDQMPERDYVLWTAM---IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378 (720)
Q Consensus 302 ~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 378 (720)
.+.+++....|...-.+| .-.+-..|+.++|++.|-++... +..+...+..+.+.|....+..+|.+++.++...
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 777766666655433333 23456677888888887766432 2345566667777777777777887777665543
Q ss_pred CCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 379 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
++.|+.+.+-|.+.|-+.|+-..|.+..-+-- ..+..+..-+..-|....-+++|+.+|++..- ++|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 46677888888888888888888887765542 23666666677777888888888888888665 68888888877
Q ss_pred HHHHH-hcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 456 LSACT-HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509 (720)
Q Consensus 456 l~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 509 (720)
+..|. +.|++++|..+++..- ..++.|.....-|+...+..|.. +|.++-+
T Consensus 666 iasc~rrsgnyqka~d~yk~~h--rkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIH--RKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHH--HhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 76664 6788999988888874 45677888888888887777743 3444433
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=8.3e-12 Score=133.01 Aligned_cols=328 Identities=17% Similarity=0.203 Sum_probs=192.5
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh---cCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN---IKNKDVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
.|++++|..++.++++... -....|-.|...|-..|+.+++...+-. +...|..-|-.+.....+.|.+++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 3666666666666666532 2445566666666666666666554432 22334455555555555566666666666
Q ss_pred hhCCCCCccchH---HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 005000 306 DQMPERDYVLWT---AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382 (720)
Q Consensus 306 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 382 (720)
.+..+.++.-|- --+..|-+.|+...|++.|.++.....+.|..-+..++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i--------------------------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI--------------------------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH---------------------------
Confidence 555544333332 22345555566666666665555542111111111111
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC--C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------------
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR--K---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-------------- 443 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------------- 443 (720)
-..+..|...++-+.|.+.++.... . +...++.++..|.+..+++.|......+...
T Consensus 284 ----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 284 ----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1112233333444444444444322 1 2223444444455555555555444444431
Q ss_pred -------------CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 444 -------------SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG--IEPNEAHYGCMVDLLGRAGHLNEALEVI 508 (720)
Q Consensus 444 -------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~eA~~~~ 508 (720)
++.++...+ -+.-++.+....+....+..... +.. ..-+...|.-+.++|.+.|++.+|++++
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 122222221 12223334444444433333333 445 3346788999999999999999999999
Q ss_pred HhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccC
Q 005000 509 KNMPM---KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585 (720)
Q Consensus 509 ~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 585 (720)
..+-. -.+...|--+...+...|.+++|.+.+++++.+.|++..+-..|+.+|.++|+.|+|.+++..+..-+-+..
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99822 226789999999999999999999999999999999999999999999999999999999988764443333
Q ss_pred CcccE
Q 005000 586 PGCSM 590 (720)
Q Consensus 586 ~~~s~ 590 (720)
+++.|
T Consensus 518 e~~a~ 522 (895)
T KOG2076|consen 518 EACAW 522 (895)
T ss_pred hhccc
Confidence 45544
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=1.7e-14 Score=145.22 Aligned_cols=255 Identities=16% Similarity=0.169 Sum_probs=112.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT-ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
+...+.+.|++++|++++++......+|+...|-.++. .+...++.+.|...+..+...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35566777888888888765544432455545444333 344567788888888877766532 55566777777 6889
Q ss_pred CHHHHHHHHHhccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 005000 398 DVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFAD 474 (720)
Q Consensus 398 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (720)
++++|.++++...+ ++...+..++..+...|+++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998887633 466778888888999999999999999987643 345566777888888999999999999999
Q ss_pred HHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 475 MTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMP--MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 475 m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..+ ..| |......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 873 345 47788889999999999999888887762 234667889999999999999999999999999999999
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.....+++++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987764
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.9e-11 Score=119.21 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=141.4
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTH 461 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 461 (720)
|--+..+|....+.++-.+.|+...+ .|+.+|..-...+.-.+++++|..=|++.++. .|+. ..|..+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHH
Confidence 44445556666666666666665532 24445555555555567778888888887764 5544 577777777778
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcC
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN---------SIVWGALLGACRVHR 531 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g 531 (720)
.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .++|+ +.+-.+++-.-.+ +
T Consensus 441 ~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E 517 (606)
T ss_pred HHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-h
Confidence 8999999999999864 45666788999999999999999999999886 44443 2333344433333 8
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++.+|+.++.++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987643
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.5e-09 Score=111.72 Aligned_cols=492 Identities=13% Similarity=0.078 Sum_probs=368.2
Q ss_pred CCChhHhhHHhcccccccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHH
Q 005000 45 LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121 (720)
Q Consensus 45 ~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 121 (720)
+.++-+|..-+.. ...++|+.++.+..+ ..+..|. +|++..-++.|..+++..++. ++.+...|.+.
T Consensus 377 P~sv~LWKaAVel-----E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL-----EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHHHhc-----cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 3456677776666 456678888876543 3444454 455666788888888888764 66677888777
Q ss_pred HHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC------CCeeeHHHHHHHH
Q 005000 122 LKGFTRDIAVEFGKELHCHVL----KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK------DDVVTWNAMFSGY 191 (720)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~ 191 (720)
.+.=-..|..+...++.+..+ ..|...+..-|-.=...+-+.|..-.+..+...... .--.+|+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 777777888888777776543 457766766666666666666776666666543321 1235788888899
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 005000 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271 (720)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 271 (720)
.+.+.++-|..+|...++. .+-+...|......=-..|..+....++..++..- +-....|-....-+-..|++..|+
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999888764 33345566666666567788888888888888873 335566666777778889999999
Q ss_pred HHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005000 272 EIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346 (720)
Q Consensus 272 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (720)
.++....+ .+...|-+-+.....+..++.|..+|.+... +....|.--+..-.-.++.++|++++++.++. -|
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp 682 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FP 682 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CC
Confidence 88887665 2456788888888899999999999988754 45667877777777889999999999998875 45
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHH
Q 005000 347 DEF-TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIV 422 (720)
Q Consensus 347 ~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 422 (720)
+-. .|..+-..+.+.++++.|+..|..-.+. ++..+..|-.|...-.+.|.+-.|..+|+...- .|...|-..|.
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 544 4555556677788888888877665543 356678899999999999999999999998743 37889999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 502 (720)
.-.+.|+.+.|..+..+.++. ++-+...|.--|...-+.++-......++ ..+.|+...-.+..++-...+++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999998875 44455667666666666665444443332 34567777888889999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 503 EALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 503 eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
+|.+.|.+. ...|| ..+|.-+...+..||.-+.-.+++.+...-+|.....+...+
T Consensus 835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999997 56664 678988999999999999999999999999998766655443
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=2.7e-10 Score=120.92 Aligned_cols=214 Identities=15% Similarity=0.111 Sum_probs=136.7
Q ss_pred HHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHhHhC
Q 005000 34 QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP----SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109 (720)
Q Consensus 34 ~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~----~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 109 (720)
.+++.+...|+.|+.++|.+||.. |+..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiar-Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIAR-YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHH-HcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 456667778999999999999999 99999999988 77666421 2334555555555555544432
Q ss_pred CCCCCcccHHHHHHHHhccCChHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhcCC
Q 005000 110 DVRPDNYTFPFLLKGFTRDIAVEF---GKELHCHVL----KFGF-----------------DSSVFVQNALISTYCLCGE 165 (720)
Q Consensus 110 g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~y~~~g~ 165 (720)
.|-+.||..++.+|...||+.. ..+.+..+. ..|. -||.. .++....-.|-
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 3555555566666655555433 111111111 0111 01100 11111111222
Q ss_pred hHHHHHHHh---------------------------------cCC-CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 005000 166 VDMARGIFD---------------------------------VSY-KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211 (720)
Q Consensus 166 ~~~A~~~f~---------------------------------~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 211 (720)
++.+.+++. ... .++..++.+.+..-..+|+.+.|..++.+|++.|
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 222222221 111 2678889999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 005000 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266 (720)
Q Consensus 212 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 266 (720)
++.+..-|-.++-+ .++...+..+..-|.+.|+.|+..|+...+-...++|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99888877777765 78888888899999999999999888877666555443
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.9e-10 Score=115.40 Aligned_cols=261 Identities=16% Similarity=0.095 Sum_probs=205.6
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+...-..+-..+++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33344455566778899999999999988764 555555555555667777666555554555554 3666788999999
Q ss_pred hhhhcCCHHHHHHHHHhccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREMLRKD---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999875443 468999999999999999999999887763 222223334455578899999999
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005000 469 REYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMP-----M---KP-NSIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
.++|.+.. ++-| |+...+-+.-+....+.+.+|..+|+..- . ++ -..+|+.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999875 6666 56777778888888999999999998761 1 12 34568899999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.+++++.+.|.++.+|..++-+|...|+++.|...+.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.2e-09 Score=105.31 Aligned_cols=491 Identities=12% Similarity=0.083 Sum_probs=319.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 005000 82 LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161 (720)
Q Consensus 82 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 161 (720)
.|-.-..--..+++...|..+|++.+... ..+...|.--+..=.+...+..|+.+++.++..-+..|. .|--.+.+=-
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHH
Confidence 34433333444666777777777776543 234444555555556667777777777777764333333 3333444555
Q ss_pred hcCChHHHHHHHhcCC--CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHH
Q 005000 162 LCGEVDMARGIFDVSY--KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 239 (720)
..|++..|+++|+.-. +|+..+|++.|..=.+.+..+.|..+++...-. .|+..+|.--.+.=-+.|....++.++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5677888888887533 477778888888777778888888888777653 477777777777777777777788877
Q ss_pred HHHHHc-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC-chhHHHHHHHHHhcCCHHHHHHH--------
Q 005000 240 RYVKEC-KI-VPNLILENALTDMYAACGEMGFALEIFGNIKN----KD-VISWTAIVTGYINRGQVDMARQY-------- 304 (720)
Q Consensus 240 ~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~~-------- 304 (720)
+.+++. |- ..+...+.+....=.++..++.|.-+|.-..+ .. ...|..+..-=-+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 777663 11 11233455555555566677777777654433 11 12222222222233443322222
Q ss_pred HhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHH
Q 005000 305 FDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE-------FTIVSILTAC---ANLGALELGEWVK 371 (720)
Q Consensus 305 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~i~ 371 (720)
++.+... |-.+|-..+..--..|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+.+.+++++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 4456777777777889999999999999865 56632 1222222222 2467888999999
Q ss_pred HHHHHcCCCCChhHhhHHhhhhh----hcCCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYC----KCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 445 (720)
+..++ -++....++.-+--+|+ ++.++..|.+++.... .|-...+...|..-.+.++++....++++.++-+
T Consensus 390 q~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 390 QACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 98888 34555666666655555 6789999999998875 4566788888888889999999999999999864
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 005000 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALL 524 (720)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll 524 (720)
+-|..+|......-...|+.+.|..+|.-+..+-.+.-....|.+.|+-=...|.++.|..+++++ ...+...+|-++.
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 335578888777778899999999999988744334445567888888888999999999999987 4445666887777
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHHHhc----CCCCc--chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 525 GACR-----VHR-----------DAEMAEMAAKQILEL----DPDNE--AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 525 ~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..-. +.+ +...|..+|+++... +|... ..+-..-++-...|.-.+...+-+.|.+
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 5433 333 567788888888653 34321 1222233344456766666666666643
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=6.3e-12 Score=130.00 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=215.9
Q ss_pred CCHHHHHHHHhhCCCC--Cc-cchHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005000 296 GQVDMARQYFDQMPER--DY-VLWTAMIDGYLRVNRFREALTLFREMQTSN--IRPDEFTIVSILTACANLGALELGEWV 370 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~i 370 (720)
=+..+|...|.+++.. |. .....+..+|...+++++|.++|+...+.. ..-+..+|.+++.-+-+. .+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3467888888886543 32 334567889999999999999999988753 122566788777554321 11222
Q ss_pred HH-HHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005000 371 KT-YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446 (720)
Q Consensus 371 ~~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 446 (720)
+. .+.+. -+..+.+|.++.+.|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 22222 25567899999999999999999999999997654 56888888888899999999999999875 45
Q ss_pred CCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 447 PDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 447 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
|.. ..|-.+...|.++++++.|.-.|+.+. .+.| +.....++...+-+.|+.++|+++++++ ..+| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 555 578888899999999999999999875 5566 5667778889999999999999999998 4555 5555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+..+...+++++|...++++.++-|++...|..++.+|.+.|+.+.|..-+.-|.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 666778889999999999999999999999999999999999999999988776654
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-10 Score=113.41 Aligned_cols=325 Identities=15% Similarity=0.135 Sum_probs=232.4
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccch-HHHHHHHHh
Q 005000 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW-TAMIDGYLR 325 (720)
Q Consensus 247 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~~~ 325 (720)
...|...+-...-.+-+.|....|...|......-+.-|.+-+....-..+.+.+..+...++..+...- --+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445555544555566677777888887777665555666555544444555555444444433321111 123345556
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCChhHhhHHhhhhhhcC--CHH-
Q 005000 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCG--DVE- 400 (720)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g--~~~- 400 (720)
..+.++++.-.......|+.-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++ |.+.. ++.
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~ 317 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHH
Confidence 667888888888888887666665555555556677889999999999988742 12456666655 33332 222
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHc
Q 005000 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQH 479 (720)
Q Consensus 401 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 479 (720)
-|..++ .+.+--+.|.-.+.+-|+..++.++|+..|++.++. .|.. ..|+.+..-|....+...|++-++.+.
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--- 391 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--- 391 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence 122222 222334456666677788889999999999998885 4554 466767778889999999999999886
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 480 GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 480 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..+++++.....+..+++.
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 3444 6778889999999999999999999998 6777 78999999999999999999999999999998878899999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHh
Q 005000 557 LCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|+++|.+.++.++|.+.+++-.+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999887655
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=7.1e-12 Score=129.62 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCChhHhhHHhhhhhhcCCHHHHHH
Q 005000 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQR 404 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~ 404 (720)
-+..+|+..|...... +.-.......+-.+|..++++++++.+|+.+.+... -.+..+|++.+--.-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3578899999985443 344456777788999999999999999999987531 2356777776654433222221111
Q ss_pred HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc
Q 005000 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 405 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 483 (720)
-+-.+.+..+.+|-++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22223345788999999999999999999999999988 466 55788877777888889999999998654 56
Q ss_pred cHHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 484 NEAHYGC---MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 484 ~~~~~~~---li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
++.+|++ +...|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.|+|.+++++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6677776 456799999999999999998 7888 5667777778899999999999999999999999999999999
Q ss_pred hHhhhcCChhHHHHHHHHHHh
Q 005000 559 NIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 559 ~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999876
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=6e-11 Score=125.09 Aligned_cols=274 Identities=10% Similarity=0.058 Sum_probs=172.2
Q ss_pred CCHHHHHHHHhhCCCC--Ccc-chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHH
Q 005000 296 GQVDMARQYFDQMPER--DYV-LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV--SILTACANLGALELGEWV 370 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~i 370 (720)
|+++.|++.+....+. ++. .|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555444332 122 2222233336677777777777777653 34433222 223455666777777777
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC---H--------HHHHHHHHHHHHcCChHHHHHHHHH
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD---K--------FTWTAMIVGLAINGHGDKSLDMFSQ 439 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~~ 439 (720)
++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77776655 4456667777777777777777777777775321 1 1233333333344445555555555
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 005000 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NS 517 (720)
Q Consensus 440 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~ 517 (720)
+-+. .+.+......+..++...|+.++|.+++++..+ ..|+.... ++......|+.+++++.+++. ...| |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 4332 234556677777888888888888888877752 34454322 222233458888888888776 4445 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+.++...|...+++++|...++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788888888888888888888888888875 5567888888888888888888876543
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.5e-10 Score=108.93 Aligned_cols=357 Identities=10% Similarity=0.060 Sum_probs=216.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH--HHH
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI--VLV 222 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~l 222 (720)
+...|.+..-...-.+-+.|....|+..|-.....-+..|.+.+.-..-.-+.+.+ ..... |...|..-+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHH
Confidence 34455555555555566778888888888766554455555544322222222221 11111 122111111 123
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcC
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK------DVISWTAIVTGYINRG 296 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g 296 (720)
..++-.....+++.+-.......|++.+...-+-...+.-...+++.|..+|+++.+. |..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455556677778888888888888877777777777777888899999999988764 4456655544333322
Q ss_pred CHH-HHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005000 297 QVD-MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375 (720)
Q Consensus 297 ~~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 375 (720)
++. -|..++ .+.+-.+.|...+.+-|.-.++.++|+..|++..+.+ +-....++.+-.-+....+...|.+-+..++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222 222222 2223345666677777888888888888888888754 2223344445555667777777777777777
Q ss_pred HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 005000 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 376 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
+.. +.|-..|-.|..+|.-.+.+.-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 654 5566677777777777777777777777663 3377777777777777777777777777777665 3355677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHc---C-CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQH---G-IEP-NEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
..|...+-+.++.++|.+.|+.-.+.. | +.| ......-|..-+.+.+++++|......
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 777777777777777777776654322 2 122 122222244455666666666655444
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.7e-10 Score=121.73 Aligned_cols=289 Identities=16% Similarity=0.109 Sum_probs=173.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHH--HHHHHHHHhcCCHHHHH
Q 005000 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE--NALTDMYAACGEMGFAL 271 (720)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~ 271 (720)
.|++++|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555433321111 112222233334556666666666665553 2232211 12244555555555555
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005000 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351 (720)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 351 (720)
..++++.+.+ ..++.....+...|.+.|++++|.+++..+.+.+..++. .+
T Consensus 174 ~~l~~~~~~~----------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~ 224 (398)
T PRK10747 174 HGVDKLLEVA----------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HR 224 (398)
T ss_pred HHHHHHHhcC----------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HH
Confidence 5555443211 124455667777888888888888888888877644221 11
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcC
Q 005000 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAING 428 (720)
Q Consensus 352 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 428 (720)
..+-. .++..++....+..+.+...++++.+++ .++.....+...+...|
T Consensus 225 ~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 225 AMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 10000 0111122222223344555555555532 36677777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 508 (720)
+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++ .+-|+..+.++..++.+.|++++|.+.|
T Consensus 278 ~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 278 DHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888887773 4444211 233444558888888888887633 2345666778888888899999999888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 509 KNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 509 ~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+.+ ...|+...+..+...+...|+.++|...+++.+.+.
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 887 677888888888888889999999999888887753
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=6.1e-10 Score=118.16 Aligned_cols=223 Identities=13% Similarity=0.033 Sum_probs=106.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH-------hhHHhhh
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV-------GNALIDM 392 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-------~~~li~~ 392 (720)
...+.+.|++++|...++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+.... +..+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555442 11333444444445555555555555555554442221111 1111111
Q ss_pred hhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH---HHHHHHHHhcCChh
Q 005000 393 YCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY---VGVLSACTHTGMVD 466 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~ 466 (720)
-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1112223344444444443 36667777777777777777777777777764 3343211 11111122335555
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN--M-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555543222222213444555555666666666666652 2 34455555555555555566666665555555
Q ss_pred Hh
Q 005000 544 LE 545 (720)
Q Consensus 544 ~~ 545 (720)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 43
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=1.5e-09 Score=115.39 Aligned_cols=464 Identities=11% Similarity=0.057 Sum_probs=263.7
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 005000 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180 (720)
Q Consensus 101 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 180 (720)
.++-.|...|+.||.+||..++..|+..|+++.|- +|..|.-..++....+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35566777788888888888888888888887777 7777777777777778888888777777776664 566
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCCHhhHHHHHHH--------------HhcCCCchHHHHH
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGE-MER-------KGVLPTSVTIVLVLSA--------------CAKLKDLDVGKRA 238 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~~-------~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~ 238 (720)
..+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+-..+.. ....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 211 1221111111111111 1111222222222
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC----c
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFDQMPERD----Y 313 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~ 313 (720)
...+...... .+... -|=.+-.....+++-..+.....+ ++..++...+..-...|+++.|..++..|.++. .
T Consensus 162 l~~~Pvsa~~-~p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 162 LAKVPVSAWN-APFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HhhCCccccc-chHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2221111100 00111 011111222334555555555444 788888888888889999999999999998762 2
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHc-----
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-----------KTYIDKN----- 377 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i-----------~~~~~~~----- 377 (720)
.-|-.++-+ .+...-+..+++-|+..|+.|+..|+..-+-.+...|....+... ...+...
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 223334433 777888888888999999999999998888777776544332211 1111100
Q ss_pred --------------------CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-------CHHHHHHHHHHHHHcCCh
Q 005000 378 --------------------KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-------DKFTWTAMIVGLAINGHG 430 (720)
Q Consensus 378 --------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~ 430 (720)
|+.....+|...+.. ...|.-++..++-..+..| ++..+..++.-|.+.-+.
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111111222211111 1145555555555554332 333444333333221110
Q ss_pred ------------------HHHHHHHHHHHHCCCCCChH----------------------------HHHHHHHHHHhcCC
Q 005000 431 ------------------DKSLDMFSQMLRASIIPDEV----------------------------TYVGVLSACTHTGM 464 (720)
Q Consensus 431 ------------------~~A~~l~~~m~~~g~~p~~~----------------------------t~~~ll~a~~~~g~ 464 (720)
.++.....+... ...||.. .-+.++..|.+.-+
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 000000001100 0122221 12233334444434
Q ss_pred hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-----MKPNSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 465 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
..++...-+... ..-+ ...|..||+.+....+.++|..+.++.. +.-|..-+..+.....+++....+..+
T Consensus 475 ~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 475 KLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 444443322221 1111 2568899999999999999999999883 223556677888888999998888888
Q ss_pred HHHHHhc---CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCcc
Q 005000 540 AKQILEL---DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584 (720)
Q Consensus 540 ~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 584 (720)
++++.+. .|.-......+.+--+..|+.+...++.+-+...|+..
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8887763 34445566677777888999999999999998888765
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=9.7e-09 Score=102.01 Aligned_cols=411 Identities=13% Similarity=0.137 Sum_probs=282.7
Q ss_pred hcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHH
Q 005000 162 LCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 238 (720)
..+++..|+.+|+.... +++..|--.+..=.++.....|..+++.....=...|. .|---+..=-.+|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence 34566777777775543 45666777777777777777777777776654222222 222222233456788888888
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQMPER----- 311 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----- 311 (720)
|+.-.+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=.++|....|..+|+...+.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 8877765 7788888888888888888888888888754 478888877777777888888888888765532
Q ss_pred -CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHH--------HHHHHHcCCC
Q 005000 312 -DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD--EFTIVSILTACANLGALELGEWV--------KTYIDKNKVK 380 (720)
Q Consensus 312 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i--------~~~~~~~~~~ 380 (720)
+...+++....-.++..++.|..+|+-.++. ++-+ ...|.....-=-+-|+....... +...++.+ +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 2334555555555667788888888877764 2222 22333333222233433322211 22233322 4
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CHHHHHHHH--------HHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DKFTWTAMI--------VGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li--------~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
.|-.+|--.+..-...|+.+...++|+..+.. .-..|.-.| -.-....+.+.+.++|+..++. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 45566777777778889999999999988532 112333322 1123467889999999999883 444
Q ss_pred ChHHHHHHHHHH----HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005000 448 DEVTYVGVLSAC----THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWG 521 (720)
Q Consensus 448 ~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 521 (720)
...||.-+--.+ .++.++..|.+++.... |.-|...++...|++=.+.+.++....++++. ...| +-.+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 557777654444 36788999999999875 88999999999999999999999999999987 6777 678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--chHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNE--AVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.....-...|+.+.|..+|+-++....-+. ..+-..++.-...|.++.|+.+++.+.++.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999888999999999999999887543221 344455666678899999999999998764
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=4.8e-10 Score=118.94 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=198.4
Q ss_pred hcCCHHHHHHHHhhCCCC--C-ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005000 294 NRGQVDMARQYFDQMPER--D-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370 (720)
Q Consensus 294 ~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 370 (720)
..|+++.|.+.+.+..+. + ...+-.....+.+.|+++.|.+.+.+..+....+...............|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 456777777776665543 2 2233444566778899999999999987653222222333346667789999999999
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHH----HHHHHHHcCChHHHHHHHHHHHHC
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTA----MIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
++.+.+.. +.+..+...+...|.+.|++++|.+.+....+. +...+.. ...++...+..+++.+.+.++...
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999886 556778889999999999999999999988643 3333321 112223334444445566666654
Q ss_pred CC---CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 005000 444 SI---IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH---YGCMVDLLGRAGHLNEALEVIKNM-PMKPN 516 (720)
Q Consensus 444 g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~~-~~~p~ 516 (720)
.. +.+...+..+...+...|+.++|.+.+++..++ .|+... .....-.....++.+++.+.+++. ...|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 22 126677888888999999999999999998743 344331 111222223457888888888776 44553
Q ss_pred -H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 517 -S--IVWGALLGACRVHRDAEMAEMAAK--QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 517 -~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+ ....++...|.+.|++++|.+.++ .+++..|++. .+..++.++.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 567799999999999999999999 5777888764 477999999999999999999987543
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.9e-10 Score=111.19 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=165.7
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
....+..+...|.+.|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677888999999999999999998753 356788888999999999999999999998864 3345677778888
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
+...|++++|.+.++.+............+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998742222334567778899999999999999999987 3444 567888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
...++++++..|+++..+..++.++...|++++|....+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888889999999999999999999887754
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=1.2e-11 Score=124.59 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=75.9
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
..+..++..+.+.++++++..+++.+.... .+++...|......+.+.|+.+.|...++.+++.. +.|..+.+.++..
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWL 189 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 344445555555555555555555554322 23344444555555555666666666666665543 3345556666666
Q ss_pred hhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHH
Q 005000 393 YCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..... +.|..+...+..++...|+.++|.
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 666666666555555442 3355566667777777777777777777766642 224556666677777777777777
Q ss_pred HHHHHHH
Q 005000 470 EYFADMT 476 (720)
Q Consensus 470 ~~~~~m~ 476 (720)
++..++.
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 7766543
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.9e-09 Score=105.20 Aligned_cols=463 Identities=11% Similarity=0.035 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhc--cCCCCCcchHHHHHHHHHcCCCchHHHHHHH---
Q 005000 30 HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR--KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL--- 104 (720)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~--~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~--- 104 (720)
+.+..+-..+...+. |+.-.--+.++ |.-.|..+.|..+.. .+...|..+.......+.+..++++|+.++.
T Consensus 33 ~~a~f~adkV~~l~~--dp~d~~~~aq~-l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~ 109 (611)
T KOG1173|consen 33 KTALFWADKVAGLTN--DPADIYWLAQV-LYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGH 109 (611)
T ss_pred hHHHHHHHHHHhccC--ChHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344444444444443 33333345666 556677777777764 4567888899999999999999999999887
Q ss_pred -HhHhC---------CCCCCccc----HHHHH-------HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005000 105 -DMLKS---------DVRPDNYT----FPFLL-------KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163 (720)
Q Consensus 105 -~m~~~---------g~~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 163 (720)
.+..- -+.+|..- -+.-. +.+......++|+..+.+.+.. |+.-+.++...-...
T Consensus 110 ~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~ 185 (611)
T KOG1173|consen 110 VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAH 185 (611)
T ss_pred hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHH
Confidence 22110 01111110 00001 1223344556666666665542 333333322221111
Q ss_pred -CChHHHHHHHhcCCCC-CeeeHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHH
Q 005000 164 -GEVDMARGIFDVSYKD-DVVTWNAMFSGYKR----VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 164 -g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
-..++-..+|+..+-. ...-.-..+..+.. ...-++....-.+-.-.|..-+......-..-|...+++.+..+
T Consensus 186 mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~k 265 (611)
T KOG1173|consen 186 MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLK 265 (611)
T ss_pred hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHH
Confidence 0111223333321100 00000000111100 00000000000001111223344444445555666777888888
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-
Q 005000 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPERDY- 313 (720)
Q Consensus 238 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~- 313 (720)
+.+.+.+.. ++....+..-|..+...|+..+-..+=.++.+ ...++|-++.--|.-.|+..+|++.|.+...-|.
T Consensus 266 it~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~ 344 (611)
T KOG1173|consen 266 ITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT 344 (611)
T ss_pred HhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc
Confidence 887777753 33444455555566666665554444444443 2467888888888888888888888877654443
Q ss_pred --cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 314 --VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 314 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
..|-.....|+-.|..|+|+..+...-+.- +-....+.-+---|.+.++++.|.+++.++.... +.|+.+.+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhh
Confidence 468888888888888888888777665431 1111112223334666777777777777776653 556677777776
Q ss_pred hhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 005000 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
++.+.+.+.+|...|+....+ .+...... .--..+++.|..+|.+.+.+++|+..
T Consensus 423 vay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEV------------------------IKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHH------------------------hhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 666677777777777654210 00000000 01223556666666666666667666
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRV 529 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~ 529 (720)
|++... -.+-+..++.++.-.|...|+++.|.+.|.+. .++|+..+-..+++.+..
T Consensus 478 ~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 666542 22345666666666666777777777776665 566766666666655443
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=4.8e-07 Score=93.59 Aligned_cols=430 Identities=15% Similarity=0.204 Sum_probs=265.9
Q ss_pred HhhHHhcccccccCChHHHHHHhcc----CCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 005000 50 VQNKLVTFCCSEKGDMKYACKVFRK----IPR-PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124 (720)
Q Consensus 50 ~~~~ll~~~y~~~g~~~~A~~~f~~----~~~-~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 124 (720)
+|-.-++. ..+.|++..-+++|++ ||. .....|...|.-....+-++-++.+|++.++- .|. .-.--+.-
T Consensus 104 Iwl~Ylq~-l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQF-LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHH-HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 44444445 5578999999999986 332 34556999999888999999999999999873 343 35666777
Q ss_pred HhccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCC--C--eeeHHHHHHHH
Q 005000 125 FTRDIAVEFGKELHCHVLKFG------FDSSVFVQNALISTYCLCGEV---DMARGIFDVSYKD--D--VVTWNAMFSGY 191 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li~~~ 191 (720)
++..+++++|.+.+..++... .+.+-..|+-+-+..++.-+. -....+++.+..+ | ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 888999999999888876532 234555666666666655332 2234455555442 3 34799999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCC----------------------CchHHHHHHHHHHHcCC--
Q 005000 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK----------------------DLDVGKRAHRYVKECKI-- 247 (720)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~g~-- 247 (720)
.+.|.+++|.++|++....- .+..-|..+.++|+.-. +++....-++.++..+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999999876642 23334555555554321 12222333333333221
Q ss_pred ---------CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C------CchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005000 248 ---------VPNLILENALTDMYAACGEMGFALEIFGNIKN---K------DVISWTAIVTGYINRGQVDMARQYFDQMP 309 (720)
Q Consensus 248 ---------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 309 (720)
+.++..|..-+.. ..|+..+-...|.+... | -...|..+.+.|-..|+++.|+.+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1122222222222 23455555555555432 1 22468888889999999999999999987
Q ss_pred CCCcc-------chHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------C-CH------HHHHHHHHHHhccCcHH
Q 005000 310 ERDYV-------LWTAMIDGYLRVNRFREALTLFREMQTSNIR----------P-DE------FTIVSILTACANLGALE 365 (720)
Q Consensus 310 ~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~~------~t~~~ll~~~~~~~~~~ 365 (720)
+-+-. +|-.-...=.++.+++.|+++.+......-. | .. ..++..+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 65433 4555555556778889999988876542211 1 11 12222333334456777
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC----CCH-HHHHHHHHHHHH---cCChHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR----KDK-FTWTAMIVGLAI---NGHGDKSLDMF 437 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~l~ 437 (720)
..+.+++.+++..+.....+ -.....+....-++++.+++++-+. |++ ..||..+.-+.+ .-..+.|..+|
T Consensus 495 stk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 78888888887765332222 2233334455667888888887642 343 367777655543 23568899999
Q ss_pred HHHHHCCCCCChHHHHHHHHHH--HhcCChhhHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 005000 438 SQMLRASIIPDEVTYVGVLSAC--THTGMVDEGREYFADMTIQHGIEPN--EAHYGCMV 492 (720)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li 492 (720)
++.++ |.+|...-+.-|+-+- -.-|....|+.+++++. .++++. ...|+..|
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat--~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT--SAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Confidence 99988 6777765444444332 24588888888888764 344442 23444443
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=6.6e-12 Score=88.63 Aligned_cols=50 Identities=30% Similarity=0.753 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 005000 78 PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127 (720)
Q Consensus 78 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 127 (720)
||+++||+||++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=2.2e-08 Score=98.12 Aligned_cols=289 Identities=16% Similarity=0.155 Sum_probs=172.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005000 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273 (720)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (720)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-..||.+.+-..+.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776665554333 2334455556667777777777777777764455555666666666666666666554
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005000 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353 (720)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 353 (720)
.++.. .|..+++.........|.+.|++.+...++..|.+.|+--|...-
T Consensus 176 v~~ll----------------------------~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-- 225 (400)
T COG3071 176 VDQLL----------------------------EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-- 225 (400)
T ss_pred HHHHH----------------------------HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--
Confidence 44332 334456666777888888888888888888888888754443211
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCCh
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHG 430 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 430 (720)
++- ..+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.
T Consensus 226 ---------------~le-----------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 226 ---------------RLE-----------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ---------------HHH-----------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 000 1122233332222233333333444443 22455555666666677777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 431 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
++|.++..+..+.+..|+-. .+-.+.+.++...-++..+...+..+..| ..+.+|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777766666522 22245566666666666665554444444 4556666667777777777777665
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 511 M-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 511 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
. +.+|+..+|+-+..++.+.|+.+.|.+..++.+-
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 5666666676666777777777776666666653
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.4e-11 Score=86.91 Aligned_cols=50 Identities=40% Similarity=0.725 Sum_probs=47.9
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 005000 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228 (720)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 228 (720)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1e-07 Score=97.67 Aligned_cols=438 Identities=13% Similarity=0.142 Sum_probs=243.2
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--h
Q 005000 87 IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA--LISTYC--L 162 (720)
Q Consensus 87 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 162 (720)
+.-+..+|++++|++.-..++..+ +.|...+..-+-+..+.+.++.|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 455667788888888888888765 44556677777777888888887744332 11 1112222 245554 5
Q ss_pred cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhcCCCchHHHHHHHH
Q 005000 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS-VTIVLVLSACAKLKDLDVGKRAHRY 241 (720)
Q Consensus 163 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 241 (720)
.+..|+|...++...+.+..+-..-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-.. -.+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----H
Confidence 677888888877544444445455556677778888888888877665432111 111111111100 0000 1
Q ss_pred HHHcCCCCChHHHHH---HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCc----
Q 005000 242 VKECKIVPNLILENA---LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ-MPERDY---- 313 (720)
Q Consensus 242 ~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~---- 313 (720)
+......| ..+|.. ..-.+...|++.+|+++++... ++..+ +.+.|.
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eEe 218 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEEE 218 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchhh
Confidence 11111111 111211 2233444555555555554331 00000 011110
Q ss_pred ------cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHhccCcHHH--------------HHHH
Q 005000 314 ------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI---LTACANLGALEL--------------GEWV 370 (720)
Q Consensus 314 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--------------a~~i 370 (720)
..--.|.-.+...|+.++|..++...++.. .+|....... |.+...-.++-. +...
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 011234455677888999999888888765 4454322222 112211111111 0111
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC-HHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCC
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD-KFTWTAMIVGL--AINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
...+... -......-+.++.+|. +.-+.+.++-...+... ...+.+++... .+...+.+|.+++...-+. .|
T Consensus 298 l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p 372 (652)
T KOG2376|consen 298 LSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HP 372 (652)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CC
Confidence 1111110 0112233345566654 45566777766665443 34455555433 2233577888888877664 44
Q ss_pred Ch--HHHHHHHHHHHhcCChhhHHHHHH--------HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 005000 448 DE--VTYVGVLSACTHTGMVDEGREYFA--------DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM------ 511 (720)
Q Consensus 448 ~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~------ 511 (720)
+. +.....+......|+++.|.+++. .+. +.+..| .+...++.+|.+.+.-+-|.+++.+.
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 44 344455666788999999999998 443 334444 45566889999988877676666654
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 512 --PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 512 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
..++ -..+|.-+...-.++|+.++|...++++++.+|++......+..+|++.. .+.|..+-
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 1222 22344444555567899999999999999999999999999999998764 55565553
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.1e-08 Score=107.57 Aligned_cols=230 Identities=17% Similarity=0.145 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CC-CCC-hhHhhHHhhhhhhcCCHHHHHHHHHhccC-------C--
Q 005000 349 FTIVSILTACANLGALELGEWVKTYIDKN-----KV-KND-IFVGNALIDMYCKCGDVEKAQRVFREMLR-------K-- 412 (720)
Q Consensus 349 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~~-~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 412 (720)
.|...+...|...|+++.|..+++..++. |. .|. ....+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777766543 11 112 22334577788889999999988888732 1
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-Ch-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcC--C
Q 005000 413 --DKFTWTAMIVGLAINGHGDKSLDMFSQMLR-----ASIIP-DE-VTYVGVLSACTHTGMVDEGREYFADMTIQHG--I 481 (720)
Q Consensus 413 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 481 (720)
-..+++.|...|...|++++|...+++..+ .|..+ .. .-++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234777888889999999988888877654 22222 22 2456677789999999999999988765443 2
Q ss_pred Ccc----HHHHHHHHHHHHhcCCHHHHHHHHHhC-------C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 005000 482 EPN----EAHYGCMVDLLGRAGHLNEALEVIKNM-------P--MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL- 546 (720)
Q Consensus 482 ~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 546 (720)
.++ ..+++.|..+|...|+++||+++++++ . ..+ ....++.|..+|...++++.|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999887 1 123 2456788899999999999999999888754
Q ss_pred ---CCCC---cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 547 ---DPDN---EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 547 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.|++ ..+|..|+.+|.++|++++|.++...+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 4578899999999999999999988775
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=7.9e-07 Score=92.04 Aligned_cols=498 Identities=11% Similarity=0.104 Sum_probs=316.3
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhC-CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHH
Q 005000 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143 (720)
Q Consensus 65 ~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (720)
++.+.....+||+ .|-.-+..+..+|+.......|++.++. .+.-....|...++-....+-++.+..+++.-++
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 4555666666664 6888888899999999999999988764 2223456788899988889999999999999888
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------CeeeHHHHHHHHHhCCChh---HHHHHHHHHHHC
Q 005000 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD----------DVVTWNAMFSGYKRVKQFD---ETRKLFGEMERK 210 (720)
Q Consensus 144 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~ 210 (720)
. ++...+-.|..+++.+++++|.+.+...... +-..|+-+-...+++-+.- ..-.+++.+..
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~- 241 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR- 241 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-
Confidence 3 4445788889999999999999998766542 3446777766666654433 33344444443
Q ss_pred CCCCCH--hhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------------------
Q 005000 211 GVLPTS--VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE---------------------- 266 (720)
Q Consensus 211 g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------------------- 266 (720)
.-+|. ..|.+|..-|.+.|.++.|..++++.+..- ..+.-++.+-+.|+....
T Consensus 242 -rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 242 -RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred -cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 24553 468889999999999999999999988752 234444445555544322
Q ss_pred HHHHHHHHhhcCCC---------------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--CccchHHHHHH
Q 005000 267 MGFALEIFGNIKNK---------------DVISWTAIVTGYINRGQVDMARQYFDQMPE-------R--DYVLWTAMIDG 322 (720)
Q Consensus 267 ~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~ 322 (720)
++-.+.-|+.+.++ ++..|..-+.. ..|+..+-...|.+... . -...|..+...
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 12222223332221 22222222221 23444444444443321 1 22368889999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----------CCCC------C
Q 005000 323 YLRVNRFREALTLFREMQTSNIRPD---EFTIVSILTACANLGALELGEWVKTYIDKN-----------KVKN------D 382 (720)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----------~~~~------~ 382 (720)
|-.+|+.+.|..+|++..+...+-- ..+|..-...=.+..+++.|..+.+.+... +.++ +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999998876543211 112222222223455667777766655421 1111 2
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM---IVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSA 458 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 458 (720)
..+|+.+++.-...|-++....+++.+.+--+.|=..+ ..-+-.+..++++.+++++-+..=-.|+.. .|+..|.-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34556666777778888888888888864322221111 222345667788998888766653345552 45544443
Q ss_pred HH---hcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHH-H
Q 005000 459 CT---HTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVDLLGRAGHLNEALEVIKNM--PMKPN--SIVWGALLGAC-R 528 (720)
Q Consensus 459 ~~---~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~--~~~~~~ll~~~-~ 528 (720)
+. ..-.++.|+.+|++..+ |.+|.. ..|-.....=.+.|....|++++++. ..++. ...||..|.-- .
T Consensus 557 fi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 32 34568999999999973 666643 23333334445679999999999998 34442 34677777433 3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcc--hHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEA--VYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.-| +.....+|+++++.-|++.. .....+++=.+.|..+.|+.++..-.+
T Consensus 635 ~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 635 IYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 333 44567899999999887543 334567778889999999999876543
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-07 Score=100.50 Aligned_cols=420 Identities=16% Similarity=0.133 Sum_probs=234.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 221 (720)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+-..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999987544 3456799999999999999999999988665443454444333
Q ss_pred H-HHHHh-cCCCchHHHHHHHHHHHc--CC--CCChHHHHHHHHHHHhc-----------CCHHHHHHHHhhcCCC---C
Q 005000 222 V-LSACA-KLKDLDVGKRAHRYVKEC--KI--VPNLILENALTDMYAAC-----------GEMGFALEIFGNIKNK---D 281 (720)
Q Consensus 222 l-l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~~~~~---~ 281 (720)
+ -+.|. +.+..+++......++.. +. ......+-.+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 34444 556777777776666652 11 11223333333333321 1123334444444321 2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005000 282 VISWTAIVTGYINRGQVDMARQYFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357 (720)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 357 (720)
..+.-.+---|+-.++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+.....- .-|..-...-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 2222222223444444444444443322 2234445555555555555555555544433320 0010000001111
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-CCChhHhhHHhhhhhhcCCHHHHHHHHHhcc----C-CCHH-HHHHHHHHHHHcCCh
Q 005000 358 CANLGALELGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREML----R-KDKF-TWTAMIVGLAINGHG 430 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~-~~~~-~~~~li~~~~~~g~~ 430 (720)
-...++.+.+......+...-- .+. ....|+-....+.+..+. + .|.. ++.-+. +... -+.
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~ 624 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQL 624 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhh
Confidence 1112333333332222221000 000 000111112222222220 0 0111 111111 1111 000
Q ss_pred HHHHHHHHHHHHCCCC--CCh------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCH
Q 005000 431 DKSLDMFSQMLRASII--PDE------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 431 ~~A~~l~~~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 501 (720)
..+..-.. |...-+. |+. ..|......+...+..++|...+.+.. ++.| ....|......+...|++
T Consensus 625 ~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhh
Confidence 00000000 1111122 232 234455567788899999988887764 3444 566777778899999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEM--AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+||.+.|... .+.| ++.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++.+.|+.+.|.+-|...
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999999887 6778 46788999999999999888888 999999999999999999999999999999999999988
Q ss_pred HhCC
Q 005000 578 LDRG 581 (720)
Q Consensus 578 ~~~~ 581 (720)
.+-.
T Consensus 781 ~qLe 784 (799)
T KOG4162|consen 781 LQLE 784 (799)
T ss_pred Hhhc
Confidence 6643
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.6e-08 Score=99.58 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=135.5
Q ss_pred hhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.+.-+|+.-.|..-|+..+.. +...|--+...|.+..+.++....|.+..+.. +-|..+|..-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 344578888888888877543 33336667778888889999999998888753 22445666666777777888999
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 469 REYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
..-|++.+ .+.| ++..|--+.-+..|.+++++++..|++. .++.-+..|+-....+..+++++.|.+.|+++++
T Consensus 414 ~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 88888775 4455 3556666777778888999999999887 3433566777788888889999999999999999
Q ss_pred cCCC------CcchHHHHHhHhhh-cCChhHHHHHHHHHHhC
Q 005000 546 LDPD------NEAVYVLLCNIYAA-CNRWDNFRELRQMILDR 580 (720)
Q Consensus 546 ~~p~------~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~ 580 (720)
++|. ++..++.-+-+..+ .+++..|.+++++..+.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 9988 66666654444433 37778888887777653
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=5.5e-08 Score=95.38 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=189.1
Q ss_pred cCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHH
Q 005000 163 CGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239 (720)
Q Consensus 163 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 239 (720)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.+-.++.+..+.--.++...+.+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888765333 2334555555667778888888888888876533455555666667777888888888888
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-----------hhHHHHHHHHHhcCCHHHHHHHHhhC
Q 005000 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV-----------ISWTAIVTGYINRGQVDMARQYFDQM 308 (720)
Q Consensus 240 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~f~~~ 308 (720)
..+.+.+.. .+.+.......|.+.|++.....+...+.+... .+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 888877543 567778888888899998888888888876432 35666776666666666666677777
Q ss_pred CCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH
Q 005000 309 PER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385 (720)
Q Consensus 309 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 385 (720)
+.+ ++..-.+++.-+.+.|+.++|.++..+..+.+..|.-. .+-.+.+.++.+.-.+..+...+.. +.++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 643 56667778888888899999998888888877666622 2223445555555444444333321 233466
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
+.+|...|.+.+.+.+|...|+... .++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777653 45666777777777777777777777766554
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=1e-08 Score=113.16 Aligned_cols=244 Identities=13% Similarity=0.034 Sum_probs=176.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 328 RFREALTLFREMQTSNIRPDE-FTIVSILTACA---------NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
..++|+.+|++..+. .|+. ..+..+..++. ..++++.|...+..+++.+ +.+..++..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 357888888888764 4543 33333333222 2345788888888888875 556778888888999999
Q ss_pred CHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHH
Q 005000 398 DVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 398 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998753 3 4668888899999999999999999999985 45432 33334555677899999999999
Q ss_pred HHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 474 DMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNS-IVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 474 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
++... ..| ++..+..+...|...|++++|.+.++++ +..|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 87632 234 4556777888999999999999999987 445543 44555556667777 47888788877653332
Q ss_pred cchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 23333477888888988888877 7776654
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3e-08 Score=94.14 Aligned_cols=305 Identities=13% Similarity=0.154 Sum_probs=135.0
Q ss_pred CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhH-------HHHHHHHHhcCCHHHHH
Q 005000 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW-------TAIVTGYINRGQVDMAR 302 (720)
Q Consensus 230 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~ 302 (720)
.+.+.|...|-+|.+.. +.+..+.-+|.+.|-+.|..+.|+++-..+.++...|+ ..|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45556666666665532 22334444555666666666666666655444222222 22333344444445555
Q ss_pred HHHhhCCCCCcc---chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 005000 303 QYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379 (720)
Q Consensus 303 ~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 379 (720)
.+|..+.+.... +...|+..|-+..+|++|++.-+++.+.+-.+..+-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 544444442222 2233444444444444444444444443322221110
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK---FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 456 (720)
...|.-|...+....+++.|...+.+..+.|. ..--.+...+...|+++.|++.++...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 11222333333334445555555554432221 111222344455555555555555555543222223444455
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK-NMPMKPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~-~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+|.+.|+.+++...+..+.+ ..+....-..+.+......-.+.|...+. .+.-+|+...+..|+..-...
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d----- 328 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD----- 328 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc-----
Confidence 555555655555555555431 12222222333333333333333333322 223344444443333321110
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEE
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 600 (720)
+.-|++.+..-+++.|....++..|.+.....+-..|.|
T Consensus 329 --------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 --------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred --------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 123556667777777777777666655444444344443
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.8e-08 Score=94.39 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=127.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---hhHhhHHhhhhhhcCCHHHH
Q 005000 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND---IFVGNALIDMYCKCGDVEKA 402 (720)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A 402 (720)
+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|+-+.++.--+. ..+.-.|..-|.+.|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345555666665555421 11222233344445555666666666655554311110 12233455556666666666
Q ss_pred HHHHHhccCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 403 QRVFREMLRKDK---FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV----TYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 403 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
+.+|..+.+.+. .....++..|-+..++++|++.-+++...+-++..+ .|.-+........+++.|..++++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666666655332 234445666666666666666666666655444432 3444555555566666666666655
Q ss_pred HHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 476 TIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 476 ~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.. ..|+ +..--.+.+.+...|+++.|.+.++.. .-.|+ +.+...|..+|.+.|+.+++...+.++.+..+..
T Consensus 207 lq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~- 282 (389)
T COG2956 207 LQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA- 282 (389)
T ss_pred Hh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-
Confidence 42 1222 222334556666666666666666665 23343 2345566666666677666666666666665543
Q ss_pred chHHHHHhHhhhcCChhHHHHH
Q 005000 552 AVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
..-..+...-....-.+.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHH
Confidence 3334444444444444444443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=2.9e-07 Score=88.41 Aligned_cols=435 Identities=14% Similarity=0.096 Sum_probs=243.0
Q ss_pred CChHHHHHHhccCC------CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 005000 63 GDMKYACKVFRKIP------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136 (720)
Q Consensus 63 g~~~~A~~~f~~~~------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 136 (720)
.++..|..+++--. +.++..| +.-++.+.|++++|+..|.-+.++. .|+......+.-+..-.|.+.+|++
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 45556665553211 1233334 3346678899999999998887754 3555555555555556778888877
Q ss_pred HHHHHHHhCCCCChhHHHHHH-HHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005000 137 LHCHVLKFGFDSSVFVQNALI-STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215 (720)
Q Consensus 137 ~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 215 (720)
+-... |+....+.|+ +.-.+.++-.+-..+-+.+.. ...---++.+.....-.+.+|++++...... .|+
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 65543 4444444444 555555655544444333322 1122233444444555788999999988765 344
Q ss_pred HhhHHHHHHH-HhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005000 216 SVTIVLVLSA-CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA--CGEMGFALEIFGNIKNKDVISWTAIVTGY 292 (720)
Q Consensus 216 ~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 292 (720)
-...+.-+.. |.+..-++.+.++++..++. ++.+....|.......+ .|+..++ -..++-+ |...--..+.-+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~--E~k~lad-N~~~~~~f~~~l 259 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED--EKKELAD-NIDQEYPFIEYL 259 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH--HHHHHHh-cccccchhHHHH
Confidence 4444444443 45777788888888877765 33344455544433333 2332221 1111111 111111122222
Q ss_pred HhcC-----CHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccC
Q 005000 293 INRG-----QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA-----NLG 362 (720)
Q Consensus 293 ~~~g-----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-----~~~ 362 (720)
++.+ .-+.|.+++-.+.+.=+.+--.++--|.++++..+|..+.+++.- ..|-.+....+..+.. ...
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 2221 224555555444443344444566668888999999888776642 3454444444443321 122
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.+..|.+.++.+-.++...|... |+ .+|.+.+.-..++++.+-.+.....
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIp-----------GR-------------------QsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIP-----------GR-------------------QSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred HHHHHHHHHHHhccccccccccc-----------ch-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655555444322 11 1222233333344444444444443
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCC-ccHHHHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 005000 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE-PNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~-~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~ 520 (720)
.=..-|...| .+..|.+..|++.+|.++|-.+. |.+ .|..+|. .|...|.++++++-|.+++-++.-..+..+.
T Consensus 388 YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsL 463 (557)
T KOG3785|consen 388 YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSL 463 (557)
T ss_pred HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHH
Confidence 3222233333 47778888888888888887663 322 3445554 4557788999999999998888544456665
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 521 GALL-GACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 521 ~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
..++ .-|.+.+.+--|-++|..+..++|.
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 5555 5688989888888888888888875
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.7e-09 Score=100.10 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=146.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
+.|..+|.+.|.+.+|.+-|+.-... .|-..||..+-.+|.+..+.+.|..++..-++. ++.++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677777778888887777776664 344455656666666666666666666555543 233333334444555555
Q ss_pred CCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 005000 397 GDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
++.++|.++++...+. ++.+...+..+|.-.++++-|+..++++++.|+. +...|+.+.-+|...+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555555332 3334444445555555555555555555555543 34444545555555555555554444
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 474 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+... . .-.| -..+|..+.......||+..|.+.++-++..+|++.
T Consensus 383 RAls-t--------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALS-T--------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHh-h--------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 4321 0 1122 356788888888889999999999999999999999
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.+++.|+-+-.+.|++++|+.++.......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999887643
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.9e-07 Score=87.30 Aligned_cols=267 Identities=9% Similarity=-0.034 Sum_probs=181.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005000 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA---MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356 (720)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 356 (720)
.|+.....+.+.+...|+.++|+..|++..--|+.+... ..-.+.+.|++++...+...+.... +-....+..-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 467777788888888888888888888766555443332 2334567788888877777766432 111111111122
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHcCChHHH
Q 005000 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML--R-KDKFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 357 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A 433 (720)
..-...+++.|..+-...++.. +.+...+-.-...+...|++++|.-.|+... . -+..+|..++..|...|...+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 2234456666666666666544 2333444334456667889999988888764 3 3788999999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHH-HHHHh-cCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 434 LDMFSQMLRASIIPDEVTYVGVL-SACTH-TGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 434 ~~l~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.-+-+..... +..+..+...+. ..|.. ...-++|.+++++.. .+.|+ ....+.+..++.+.|+.+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8887776553 333445554442 33332 233467888887653 45564 45566777888899999999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 511 M-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 511 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
. ...||....+.|....+..+.+.+|...|..++.++|++..
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 6 56788888999999999999999999999999999998743
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2e-08 Score=101.33 Aligned_cols=211 Identities=15% Similarity=0.081 Sum_probs=148.3
Q ss_pred CcHHHHHHHHHHHHHcC-CCC--ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHH
Q 005000 362 GALELGEWVKTYIDKNK-VKN--DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLD 435 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 435 (720)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555565665432 222 245677788889999999999999998753 367899999999999999999999
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 005000 436 MFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--P 512 (720)
Q Consensus 436 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~ 512 (720)
.|++.++. .|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999874 5654 6777788888899999999999998863 3454332222233445678899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQIL-------ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 513 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..|+...| . ......|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...+++..+.+
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 2 222234444333 2333333 4556677899999999999999999999999987654
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.9e-07 Score=98.27 Aligned_cols=247 Identities=14% Similarity=0.151 Sum_probs=129.8
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHc-----CC-CCChH-HHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHH
Q 005000 217 VTIVLVLSACAKLKDLDVGKRAHRYVKEC-----KI-VPNLI-LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289 (720)
Q Consensus 217 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 289 (720)
.|...+...|...|+++.|..+++..++. |. .|.+. ..+.+...|...+++.+|..+|++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~------------- 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE------------- 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-------------
Confidence 45555666777777777777777766553 21 11221 222345566666666666666553
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC----ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 005000 290 TGYINRGQVDMARQYFDQMPERD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 365 (720)
|..+++....++ ..+++.|...|.+.|++++|...+++..+-
T Consensus 267 -----------AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------- 312 (508)
T KOG1840|consen 267 -----------ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------- 312 (508)
T ss_pred -----------HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------
Confidence 233333322221 235666667777777777777776665431
Q ss_pred HHHHHHHHHHHcC-CCCC-hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 366 LGEWVKTYIDKNK-VKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 366 ~a~~i~~~~~~~~-~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
... ..+ ..+. ...++.+...+...+++++|..++... ++++..
T Consensus 313 -----~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~---- 357 (508)
T KOG1840|consen 313 -----YEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA------------------------LKIYLD---- 357 (508)
T ss_pred -----HHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH------------------------HHHHHh----
Confidence 000 000 0000 112233444444555555555554422 111110
Q ss_pred CCCCCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHHc----C-CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005000 444 SIIPDE----VTYVGVLSACTHTGMVDEGREYFADMTIQH----G-IEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-- 511 (720)
Q Consensus 444 g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-- 511 (720)
-+.++. -+++.+...+.+.|++++|.++|+++.... + ..+ ....++.|...|.+.++.++|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 011111 245555555555555555555555544221 1 111 1334555666666666666666665554
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 512 ------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 512 ------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
+..|+ ..+|..|...|...|+++.|+++.++++.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344 45788999999999999999999888874
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=8e-08 Score=93.75 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=112.7
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
...+..+...+...|++++|...+++..+.. +.+... +..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~-----------------------------------~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLA-----------------------------------YLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH-----------------------------------HHHHHHH
Confidence 3456667777777777777777777776542 122333 3344444
Q ss_pred hhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhH
Q 005000 393 YCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 468 (720)
|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++.......|. ...+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 4555555555555544421 2334455555555666666666666666655322222 23444455566666777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
...+.+.... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777666521 1223455666667777777777777776665 2222 4455556666667777777777776666554
Q ss_pred C
Q 005000 547 D 547 (720)
Q Consensus 547 ~ 547 (720)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.2e-06 Score=84.26 Aligned_cols=294 Identities=14% Similarity=0.059 Sum_probs=209.0
Q ss_pred cCCHHHHHHHHhhCC-----CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCcHH
Q 005000 295 RGQVDMARQYFDQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT----IVSILTACANLGALE 365 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~ 365 (720)
.++...|...|-.+. ..|+.....+...+...|+.++|+..|++.+-. .|+..+ |..+ +.+.|+.+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHh
Confidence 444445544443332 347778889999999999999999999988753 454433 2222 34567777
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI---VGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~ 442 (720)
....+...+.... +.+...|-.-........+++.|+.+-++.++-|.....++| ..+.+.|++++|.-.|+..+.
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 7776666655432 111122222223334456888888888887765554444443 678889999999999999887
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCC-H
Q 005000 443 ASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV-DLLG-RAGHLNEALEVIKNM-PMKPN-S 517 (720)
Q Consensus 443 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~eA~~~~~~~-~~~p~-~ 517 (720)
. .| +-..|..|+..|...|.+.+|.-.-....+ -+..+..+.+.+. +.+. ....-++|.+++++. .++|+ .
T Consensus 363 L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 363 L--APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred c--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 4 54 457999999999999999999877766542 2334555555442 2222 233457899999886 67886 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 597 (720)
...+.+...|...|..+.++.++++.+...|++ ..++.|++++...+.+.+|.+.+.....
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr------------------ 499 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR------------------ 499 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------
Confidence 566778888999999999999999999999985 7889999999999999999999887764
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005000 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLK 625 (720)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (720)
..|+.+....-++.|..+++
T Consensus 500 --------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 --------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred --------cCccchHHHHHHHHHHhccC
Confidence 35677778888887776666
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=4.5e-08 Score=108.02 Aligned_cols=211 Identities=13% Similarity=0.004 Sum_probs=162.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh---------hcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCC
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYC---------KCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGH 429 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 429 (720)
++++.|...+..+++.. +.+...+..+..+|. ..+++++|...+++..+. +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888898888764 334555666655544 334589999999988543 67788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHH
Q 005000 430 GDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~ 507 (720)
+++|+..|++..+. .|+. ..+..+..++...|++++|...++++. .+.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999986 4554 567778888999999999999999986 334543 2333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 508 IKNMP--MKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 508 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++.- ..|+ +..+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2354 4556777788889999999999999998888988888888888888888 4788877776553
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=1.4e-06 Score=91.24 Aligned_cols=460 Identities=13% Similarity=0.104 Sum_probs=269.6
Q ss_pred HHhcccccccCChHHHHHHhcc--CCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC
Q 005000 53 KLVTFCCSEKGDMKYACKVFRK--IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130 (720)
Q Consensus 53 ~ll~~~y~~~g~~~~A~~~f~~--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 130 (720)
+-|+. |.|.|.+..|.+.-.. -...|......+-.++.+..-++.|-++|+.+.. |...+..+.+-..
T Consensus 620 aaiql-yika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 620 AAIQL-YIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHH-HHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 34555 6666666666554421 1123444444555555555556666666665532 2223333333333
Q ss_pred hHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 131 VEFGKELHCHVLKFGFDSSVFV-QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 131 ~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
+..|.++-+.. ++..++. -..-...+...|+++.|..-|-+.. ..-..|.+-.....|.+|+.+++.++.
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 44444433322 2222221 1223344455677777777664321 112234566778899999999998887
Q ss_pred CCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--chhHHH
Q 005000 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD--VISWTA 287 (720)
Q Consensus 210 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~ 287 (720)
... -.--|..+...|+..|+++.|.++|.+. ..++-.|+||.+.|++++|.++-++...|. +.+|-+
T Consensus 761 qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred hcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 643 3345777888999999999999998632 345667999999999999999999887764 455666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++..+-.... -..|...+..-+...|++..|
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHH
Confidence 66778899999999999998888864 5788999999999998877543211 133555566667778888888
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC-----HHHHHHH------HHHHHHcCChHHHHH-
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD-----KFTWTAM------IVGLAINGHGDKSLD- 435 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~l------i~~~~~~g~~~~A~~- 435 (720)
..-+-.+.+ |.+-++||-..+.+++|.++-+.--..| ...|..- +..+-++|..++|+.
T Consensus 902 e~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 902 EEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 766544332 6678899999999999998876543222 2233221 222333444443333
Q ss_pred ------------HHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH--------------
Q 005000 436 ------------MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-------------- 489 (720)
Q Consensus 436 ------------l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-------------- 489 (720)
+-+-..+.. .|.. ...+..-+...|++++|-+-+-+..+ . ..-..+|.
T Consensus 973 a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaik-l--ntynitwcqavpsrfd~e~ir~ 1046 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIK-L--NTYNITWCQAVPSRFDAEFIRA 1046 (1636)
T ss_pred hhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhh-c--ccccchhhhcccchhhHHHHHc
Confidence 222222211 1221 12233345567888888766655432 1 11111111
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 490 -----CMVDLLGRAGHLNEALEVIKNMPMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 490 -----~li~~~~~~g~~~eA~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
.-+.++.+.++|..|.++-+.-- || +.++..-..+....|++-+|+-++-++ ..|+- ..+-|.
T Consensus 1047 gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~i------~l~yf~ 1116 (1636)
T KOG3616|consen 1047 GNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPDI------ALNYFI 1116 (1636)
T ss_pred CCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhheeec--CCCch------HHHHHH
Confidence 12344555555555555544431 22 123333334444556666665544222 23432 345567
Q ss_pred hcCChhHHHHHHH
Q 005000 563 ACNRWDNFRELRQ 575 (720)
Q Consensus 563 ~~g~~~~a~~~~~ 575 (720)
..+.|.+|.++-+
T Consensus 1117 e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1117 EAELWPDALRIAK 1129 (1636)
T ss_pred HhccChHHHHHHH
Confidence 7888888887643
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=9.4e-07 Score=92.40 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=117.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
.+.+.|+++.|+..|-+... ....+.+......+..|..++..+...... ..-|..+.+-|+..|+++-
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHH
Confidence 34445555555555543321 122334444555666666666655554322 2234556666777777777
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC
Q 005000 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481 (720)
Q Consensus 402 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 481 (720)
|.++|-+.. .++-.|..|.+.|+++.|.++-.+.. |.......|.+-..-.-..|++.+|.+++-.+.
T Consensus 784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 777665542 23445566667777777666654432 222223344444444556666666666664331
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
.|+. -|.+|-+.|..++.+++.++-.-..-..|...+..-+...|+...|+.-|-++ .-+..-.++|
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmy 918 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMY 918 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHh
Confidence 3443 35567777777777766666421112334455555566666666666555433 2344456666
Q ss_pred hhcCChhHHHHHHH
Q 005000 562 AACNRWDNFRELRQ 575 (720)
Q Consensus 562 ~~~g~~~~a~~~~~ 575 (720)
...+.|++|.++-+
T Consensus 919 k~s~lw~dayriak 932 (1636)
T KOG3616|consen 919 KASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHh
Confidence 66677776666543
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=7e-06 Score=89.10 Aligned_cols=494 Identities=13% Similarity=0.173 Sum_probs=299.1
Q ss_pred hhHHhcccccccCChHHHHHHhccCCC--CCcchHHH----HHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 005000 51 QNKLVTFCCSEKGDMKYACKVFRKIPR--PSVCLWNT----MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124 (720)
Q Consensus 51 ~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 124 (720)
+-.+-+. |.+.|-+..|++.|..+.. +.++.-+. -+..|.-.-.++++++.++.|+..+++-|-.+...+..-
T Consensus 609 ra~IAqL-CEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQL-CEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHH-HHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445556 7788888888888877653 22222111 123344445678899999999988887776666555555
Q ss_pred HhccCChHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------
Q 005000 125 FTRDIAVEFGKELHCHVLKF-----------GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK--------------- 178 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------------- 178 (720)
|...-..+...++|+..... .+..|+.+.-..|.+-++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55444445555555544321 3566777888899999999999999888764210
Q ss_pred ----C------------CeeeH------HHHHHHHHhCCChhHHHHHHHHH---------------HHCCCCCCHhhHHH
Q 005000 179 ----D------------DVVTW------NAMFSGYKRVKQFDETRKLFGEM---------------ERKGVLPTSVTIVL 221 (720)
Q Consensus 179 ----~------------~~~~~------~~li~~~~~~g~~~~A~~l~~~m---------------~~~g~~p~~~t~~~ 221 (720)
| |.+.| -..|..|++.=++...-.+...+ .-.|..| ..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~de 843 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDE 843 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHH
Confidence 1 11111 12345565543333222222111 1123333 345
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH-H---HHhh------cCCCCc---------
Q 005000 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL-E---IFGN------IKNKDV--------- 282 (720)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~---~~~~------~~~~~~--------- 282 (720)
+..-+-+..++..-...++..+..|.. |..++|+|...|...++-.+-. + .|+. ..++|+
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 666777888888888899999998866 8899999999887765433211 0 0110 011111
Q ss_pred --------------hhHHHHHHHHHhcCCHHHHHHHHhhC----------------C-CCCccchHHHHHHHHhcCChhH
Q 005000 283 --------------ISWTAIVTGYINRGQVDMARQYFDQM----------------P-ERDYVLWTAMIDGYLRVNRFRE 331 (720)
Q Consensus 283 --------------~~~~~li~~~~~~g~~~~A~~~f~~~----------------~-~~~~~~~~~li~~~~~~g~~~~ 331 (720)
..+-...+-+.+..+.+--.+++.+- + ..|+..-+.-+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 01122222233444444333333211 1 1255566677788888888888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-----------------------CCCChhHh
Q 005000 332 ALTLFREMQTSNIR--PDEFTIVSILTACANLGALELGEWVKTYIDKNK-----------------------VKNDIFVG 386 (720)
Q Consensus 332 A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----------------------~~~~~~~~ 386 (720)
-++++++..-.+-. -+...-+.++-...+ .+.....++...+-..+ +..+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 88888887643211 111111112111111 11122222222211111 11111222
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
+.|++ ..++++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22221 1233333333333332 4567999999999999999998877542 35678999999999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+-.+++...+ +..-+|.++ +.|+-+|++.+++.|-++++. .||..-...+..-|...|.++.|.-+|..
T Consensus 1151 dLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 9999998775 556677765 458999999999999888874 47888888999999999999999888764
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467788888888888888877654443
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=2.3e-05 Score=81.77 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACR 528 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~ 528 (720)
+..+...+-+.|+++.|..+++... +..|+ ++.|-.=..++..+|.+++|..++++. +++ ||...-.--..-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3344555666677777777766554 34454 344444456666677777777777665 222 33333223333444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 529 VHRDAEMAEMAAKQILELDPDN---------EAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
+.++.++|.+++.+..+.+-+- .....-=+.+|.++|+|.+|.+-+..
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 5566666666666655433210 01111224556667777666654433
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=5e-08 Score=88.65 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=139.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL 494 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 494 (720)
...+.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 345667889999999999999999885 5655 588888889999999999999999876 3455 56788899999
Q ss_pred HHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 495 LGRAGHLNEALEVIKNMPMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
++..|++++|...|++.-..| -..+|..+.....+.|+.+.|+..+++.++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999984334 3568888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005000 571 RELRQMILDRGI 582 (720)
Q Consensus 571 ~~~~~~m~~~~~ 582 (720)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.5e-05 Score=76.93 Aligned_cols=402 Identities=13% Similarity=0.097 Sum_probs=210.5
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHhcCCCch
Q 005000 158 STYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI-VLVLSACAKLKDLD 233 (720)
Q Consensus 158 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~ 233 (720)
..|.+.|++++|..++.-+.. ++...|-.+.-.+.-.|.+.+|..+-... |+.... ..++...-+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHH
Confidence 344445555555555543221 23334444444444445555554443321 222222 22333333555555
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--CchhHHHH-HHHHHhcCCHHHHHHHHhhCC-
Q 005000 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK--DVISWTAI-VTGYINRGQVDMARQYFDQMP- 309 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~- 309 (720)
+-..+++.+... ..-.-+|.++.-..-.+++|.+++.++... +-...|.. .-.|.+..-++-+.++++--.
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 555555444332 122233444444444566666666665542 22333322 223444444444443333221
Q ss_pred --CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHH-HHhccCcHHHHHHHHHHHHHcCCCCChhH
Q 005000 310 --ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS-ILT-ACANLGALELGEWVKTYIDKNKVKNDIFV 385 (720)
Q Consensus 310 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 385 (720)
..++++-|.......+.=....|..-.+++.+.+-.. +.+.. ++. -+.--..-+.|.+++--+.+. .|. .
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--A 287 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--A 287 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--h
Confidence 1233344444443333323333333334443332111 11100 000 001112334555555444432 232 2
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCChH-HHHHHHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH-------GDKSLDMFSQMLRASIIPDEV-TYVGVLS 457 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 457 (720)
--.|+-.|.+.+++++|..+.++.....+.-|-.-...++..|+ ..-|.+.|+-.-+.+..-|.+ .-.++.+
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 33577789999999999999998865555444333333444443 344555555554555444443 2344555
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCCHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-MK-PNSIVWGALLGA-CRVHRDAE 534 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~-~~~~g~~~ 534 (720)
++.-.-++++.+-++..+. .+=...|...+ .+..+++..|.+.+|+++|-... .+ .|..+|.+++.- |...+.++
T Consensus 368 ~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 6666678899999998885 44334444444 57899999999999999998873 12 367788777755 56677888
Q ss_pred HHHHHHHHHHhcC-CC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 535 MAEMAAKQILELD-PD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 535 ~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.|-.+ +++.+ |. .....-.+++.|.+++.+--|.+.|+.+...+
T Consensus 446 lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 446 LAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 76555 44444 32 23345567888999999999999998876544
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=4e-07 Score=91.91 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=152.1
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHH
Q 005000 327 NRFREALTLFREMQTSN-IRPD--EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
+..+.++.-+.+++... ..|+ ...+...-..+...|+.+.|...+..+++.. +.+..+|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776532 2222 2345555556677788888888887777764 456788899999999999999999
Q ss_pred HHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC
Q 005000 404 RVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480 (720)
Q Consensus 404 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 480 (720)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998853 3 5678888888899999999999999999875 55543222222234556789999999976542 2
Q ss_pred CCccHHHHHHHHHHHHhcCCHHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNE--ALEVIKNM-P----MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD-NE 551 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~e--A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~ 551 (720)
..|+...+ .++.. ..|++.+ +.+.+.+. . ..| ....|..+...+...|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 23333 3455433 33333321 1 112 3457899999999999999999999999999974 44
Q ss_pred chHHHHHhH
Q 005000 552 AVYVLLCNI 560 (720)
Q Consensus 552 ~~~~~l~~~ 560 (720)
.+-..+..+
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 444444443
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=4.1e-06 Score=91.07 Aligned_cols=531 Identities=12% Similarity=0.008 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHhCCCCCh-hHhhHHhcccccccCChHHHHHHhccCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHh
Q 005000 31 QLKQIHSQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106 (720)
Q Consensus 31 ~~~~~~~~~~~~g~~~~~-~~~~~ll~~~y~~~g~~~~A~~~f~~~~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 106 (720)
....+|..+....+.++. ..+..|=.. |...-+...|.+.|+... ..|..+|..+...|++..+++.|..+.-.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~i-Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQI-YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 456677777777776653 455666666 877778889999998654 467788999999999999999999883322
Q ss_pred HhCCC-CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHH
Q 005000 107 LKSDV-RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185 (720)
Q Consensus 107 ~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 185 (720)
-+... ..-...|..+--.+-..++...+..-|+...+.. +.|...|..|..+|..+|++..|.++|++...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 22110 0011112222223456677888888888887754 447788999999999999999999999887665554443
Q ss_pred HH---HHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhcCCCchHHHH-------HHHHHHHcCCCC
Q 005000 186 AM---FSGYKRVKQFDETRKLFGEMERK------GVLPTSVTIVLVLSACAKLKDLDVGKR-------AHRYVKECKIVP 249 (720)
Q Consensus 186 ~l---i~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~-------~~~~~~~~g~~~ 249 (720)
.- ....+..|.+.+|+..+...... +..--..++..+...+...|-...+.. .+...+......
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 32 22346679999999988776432 111122333333333333333223333 333322222222
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchh--HHHHHHH-HHhcCCH---H---HHHHHHhhCC--CCCccchHH
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVIS--WTAIVTG-YINRGQV---D---MARQYFDQMP--ERDYVLWTA 318 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~-~~~~g~~---~---~A~~~f~~~~--~~~~~~~~~ 318 (720)
+...|-.+ .+|..+|-... ++.+. +..++.. .-+.+.. + -+.+.+-.-. ..+..+|..
T Consensus 712 ~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 712 DRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred hHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 22222222 22233333333 22111 0001110 1111111 0 0011110000 012445555
Q ss_pred HHHHHHh----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHh
Q 005000 319 MIDGYLR----V----NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390 (720)
Q Consensus 319 li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 390 (720)
++..|.+ . .+...|+..+.+.++. ..|...+-..+......|++..+..-+-...... +....+|..+.
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccc
Confidence 5544443 1 1223455555555442 2333333334444444444443332222222211 23345555566
Q ss_pred hhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHH----------------------------
Q 005000 391 DMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQ---------------------------- 439 (720)
Q Consensus 391 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~---------------------------- 439 (720)
-.+.+..+++.|...|.....- |.+.|-.+.......|+.-+++.+|..
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG 937 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc
Confidence 6666666666666666655321 334444333333334444444444332
Q ss_pred -----------HHH---------CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHH----HHHHH
Q 005000 440 -----------MLR---------ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC----MVDLL 495 (720)
Q Consensus 440 -----------m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~ 495 (720)
.-. .|.+-+...|........+.+.+..+.+...+...-...+-+...|+. ....+
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 111 111222244555555555555555555544443321111223333332 22334
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHhHhhhcCChhHHHH
Q 005000 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA---VYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 572 (720)
...|.++.|..-+...+..-+..+-.+-+.. .-.|+++++.+.|++++.+--++.. ....++.....++.-+.|..
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 4455666555555444333333333333333 4467899999999999887544333 33344445566677777777
Q ss_pred HHHHHH
Q 005000 573 LRQMIL 578 (720)
Q Consensus 573 ~~~~m~ 578 (720)
.+-+.+
T Consensus 1097 lLfe~~ 1102 (1238)
T KOG1127|consen 1097 LLFEVK 1102 (1238)
T ss_pred HHHHHH
Confidence 644443
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=4.3e-06 Score=88.85 Aligned_cols=421 Identities=14% Similarity=0.090 Sum_probs=260.9
Q ss_pred CChhHhhHHhc--ccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhC-C-------C-CCC
Q 005000 46 TNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-D-------V-RPD 114 (720)
Q Consensus 46 ~~~~~~~~ll~--~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g-------~-~p~ 114 (720)
.|..+-..+++ . |..-|+++.|.+-..-+. .-..|..|.+.+.+..+.+-|.-.+-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSf-yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSF-YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeE-EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35666666664 5 778899999988776654 3456999999999988877776665555421 1 1 122
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CeeeHHHHHHHHHh
Q 005000 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKR 193 (720)
Q Consensus 115 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~ 193 (720)
.+=.-+.-.....|.+++|+.++.+..+ |..|-..|...|.+++|.++-+.-.+- -..||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 2223333334678999999999998877 344557788899999999988653331 22366666666777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005000 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273 (720)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (720)
.++.+.|++.|++-.. . - +-...++. .++...++.... ..|...|.--....-..|+++.|+.+
T Consensus 871 r~Di~~AleyyEK~~~---h-a-fev~rmL~-----e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV---H-A-FEVFRMLK-----EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC---h-H-HHHHHHHH-----hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHH
Confidence 8899999999886421 1 0 11111111 111111122111 12445555555556678999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005000 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353 (720)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 353 (720)
|.... -|-++++..+-.|+.++|-++-++- .|..+...+...|-..|++.+|+..|.+.+ +|..
T Consensus 935 Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsn 998 (1416)
T KOG3617|consen 935 YSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSN 998 (1416)
T ss_pred HHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHH
Confidence 88644 4777888888889999998887654 355667788889999999999999998775 3444
Q ss_pred HHHHHhccCcH---------------HHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc--------
Q 005000 354 ILTACANLGAL---------------ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-------- 410 (720)
Q Consensus 354 ll~~~~~~~~~---------------~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------- 410 (720)
.|+.|-..+-- -.|-.+++ +.|.. ..--+..|-|.|.+.+|+++--+-.
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 55444332211 11122221 22211 1234556778888888777633221
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc
Q 005000 411 ------RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484 (720)
Q Consensus 411 ------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 484 (720)
..|+...+.-..-+..+.++++|..++-...+ |...+..|... ++.-..++-+.|.-...-.|+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCcc
Confidence 22666667777778888888888888776554 34455555443 333334444444322212233
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005000 485 ----EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 485 ----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
......+.+.+.++|.+..|-+-|.+.+.+ ...+.++.+.||.++
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 244556778888899998888888887633 123455556666554
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=9e-06 Score=86.46 Aligned_cols=427 Identities=17% Similarity=0.103 Sum_probs=264.6
Q ss_pred hCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCeee
Q 005000 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK----DDVVT 183 (720)
Q Consensus 108 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~ 183 (720)
...+.-|+..|-.+--+....|+++.+.+.|++....- ......|+.+-..|..+|.-..|..+.+.-.. |+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 34456677888888888889999999999999988743 34567888899999999999999999976433 33233
Q ss_pred HHHHHH-HHH-hCCChhHHHHHHHHHHHC--C----CCCCHhhHHHHHHHHhc----CC-------CchHHHHHHHHHHH
Q 005000 184 WNAMFS-GYK-RVKQFDETRKLFGEMERK--G----VLPTSVTIVLVLSACAK----LK-------DLDVGKRAHRYVKE 244 (720)
Q Consensus 184 ~~~li~-~~~-~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~~~~~----~~-------~~~~a~~~~~~~~~ 244 (720)
--.|+. .|. +-+..++++++-.+.... + +.|- .|..+--+|+. .. ...++.+.++..++
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333332 233 347778888877776651 1 2332 23333333321 11 12346666777766
Q ss_pred cCC-CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---Cccch
Q 005000 245 CKI-VPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLW 316 (720)
Q Consensus 245 ~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~ 316 (720)
.+. .|++..| +.--|+-.++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+...+. |-...
T Consensus 473 ~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred cCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 553 3444333 44456777889999888776543 57889999999999999999999998876543 22222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTS--NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 394 (720)
..-+..-..-++.++|+.....+... ...|-..+.. .|....-..-...... .....+.++..+.....
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVA 621 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cccccchhhHHHHHHHH
Confidence 22233333467778887777666531 0011000000 1110000000000000 01111222222221111
Q ss_pred ---hcCCHHHHHHHHHhccCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 005000 395 ---KCGDVEKAQRVFREMLRKD------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465 (720)
Q Consensus 395 ---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (720)
+.-..+.....+...+.++ ...|......+...++.++|...+.+....- .-....|......+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 1111111122222222333 2356666778888899999988887776531 22334555555667788999
Q ss_pred hhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 466 DEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALE--VIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .++| +...|..+.....+.|+.++|.+.|
T Consensus 701 ~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999998764 56664 6778889999999998777777 77776 6777 7889999999999999999999999
Q ss_pred HHHHhcCCCCcc
Q 005000 541 KQILELDPDNEA 552 (720)
Q Consensus 541 ~~~~~~~p~~~~ 552 (720)
.-++++++.+|.
T Consensus 778 ~aa~qLe~S~PV 789 (799)
T KOG4162|consen 778 QAALQLEESNPV 789 (799)
T ss_pred HHHHhhccCCCc
Confidence 999999887653
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=7.1e-06 Score=77.30 Aligned_cols=385 Identities=12% Similarity=0.071 Sum_probs=188.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH-HHHHhc
Q 005000 153 QNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV-LSACAK 228 (720)
Q Consensus 153 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~ 228 (720)
+++.+..+.+..++++|.+++..-.+ ++....+.+...|....++..|-+.++++-.. .|...-|..- ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 34444445566666666666653332 23344555555666666666666666665443 3333333211 122233
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 308 (720)
.+.+..|..+...+... ++ ..+..+.. -.......+++..+..+.++.
T Consensus 91 A~i~ADALrV~~~~~D~---~~--L~~~~lqL---------------------------qaAIkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PA--LHSRVLQL---------------------------QAAIKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred hcccHHHHHHHHHhcCC---HH--HHHHHHHH---------------------------HHHHhcccccCcchHHHHHhc
Confidence 44444444444433321 11 11111100 001112334444444445444
Q ss_pred CC-CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-----
Q 005000 309 PE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND----- 382 (720)
Q Consensus 309 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~----- 382 (720)
+. .+..+.+.......+.|++++|++-|+...+-+--.....|+..+. ..+.++...|....+.++++|++..
T Consensus 139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 42 3333444444444455555555555555544332222333443332 2233455555555555554443211
Q ss_pred -----------------------hhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CHHHHHHHHHHHHHcCChHHHH
Q 005000 383 -----------------------IFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DKFTWTAMIVGLAINGHGDKSL 434 (720)
Q Consensus 383 -----------------------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~ 434 (720)
+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccH
Confidence 112233334567889999999999999754 777776654322 245565666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC-CccHHHHHHHHHHHH-hcCCHHHHHHHHHhCC
Q 005000 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI-EPNEAHYGCMVDLLG-RAGHLNEALEVIKNMP 512 (720)
Q Consensus 435 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~~~eA~~~~~~~~ 512 (720)
+-++-+...+.- ...||..++-.|++..-++.|-.++.+-. ..-. -.+...|+ |++++. -.-..++|++-++.+.
T Consensus 297 ~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 297 EKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 666666654332 34699999999999998988888875421 0000 11233343 334433 3446677776665541
Q ss_pred CCCC--HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 513 MKPN--SIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 513 ~~p~--~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..-. ......-+.--+..++ ...+..-+++.+++- -......+++|.+..++..++++|..-.+
T Consensus 374 ~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 374 GMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 0000 0000011111112221 112333344444432 12455678889999999999998876543
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.4e-08 Score=98.35 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=162.1
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 005000 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDM 436 (720)
Q Consensus 360 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l 436 (720)
+.|++..|.-.++..++.+ +.+...|.-|...-...++-..|+..+.+..+- |....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4555666655666655554 455667777777777777777777777766433 566677777788888888888888
Q ss_pred HHHHHHCCCC--------CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 437 FSQMLRASII--------PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508 (720)
Q Consensus 437 ~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 508 (720)
++.-+....+ ++..+-.. .............++|-++....+..+|++++.+|.-+|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8887653211 01000000 1112222334455667677666776788999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 509 KNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 509 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+.+ ..+| |...||-|...+....+.++|+.+|.+++++.|....+.+.|+-.|...|.|+||.+.+-.+..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 997 6778 7889999999999999999999999999999999999999999999999999999998776654
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=8.2e-05 Score=77.02 Aligned_cols=206 Identities=8% Similarity=0.027 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHH--HHHHHH--cCCCchHHHHHHH
Q 005000 29 MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT--MIKGYS--RIDSHKNGVLIYL 104 (720)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~--li~~~~--~~g~~~~A~~l~~ 104 (720)
.+.+.+.-..++..+..+.....-.++.. ...+++++|+++.+.-+-. .++|. +=.+|+ +.+..++|+..+.
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvVal--Iq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVAL--IQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhh--hhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 56666677777776643334444455544 5778888888776543321 11222 234443 5678888888877
Q ss_pred HhHhCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCee
Q 005000 105 DMLKSDVRPD-NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182 (720)
Q Consensus 105 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 182 (720)
. ..++ ..+...-...|-+.+++++|..+|+.+.+.+.+ .|...-..++..-. .-.+. +.+..+.....
T Consensus 104 ~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~ 173 (652)
T KOG2376|consen 104 G-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPED 173 (652)
T ss_pred c-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcc
Confidence 2 2333 335555556677888899999999988886642 22222223322211 11111 34444443344
Q ss_pred eHHHHH---HHHHhCCChhHHHHHHHHHHHCC-------------CCCCHhh-HHHHHHHHhcCCCchHHHHHHHHHHHc
Q 005000 183 TWNAMF---SGYKRVKQFDETRKLFGEMERKG-------------VLPTSVT-IVLVLSACAKLKDLDVGKRAHRYVKEC 245 (720)
Q Consensus 183 ~~~~li---~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (720)
+|..+- ..+...|++.+|+++++...+.+ +.-+..+ -..+.-.+-..|+-++|.+++..+++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 444333 35677899999999988873211 1111111 112333445678888888888888887
Q ss_pred CCC
Q 005000 246 KIV 248 (720)
Q Consensus 246 g~~ 248 (720)
...
T Consensus 254 ~~~ 256 (652)
T KOG2376|consen 254 NPA 256 (652)
T ss_pred cCC
Confidence 543
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.2e-07 Score=86.49 Aligned_cols=226 Identities=14% Similarity=0.055 Sum_probs=147.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 005000 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264 (720)
Q Consensus 185 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 264 (720)
+.|.+.|.+.|.+.+|...|+.-+.. .|-..||..+-+.|.+..+...|..++..-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667888888888888888777665 455667777777788878888887777776665 344544444555566666
Q ss_pred CCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005000 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344 (720)
Q Consensus 265 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (720)
++.++|.++|+...+. ...++.+...+..+|.-.++++-|+..|+++.+.|+
T Consensus 304 ~~~~~a~~lYk~vlk~----------------------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~ 355 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL----------------------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA 355 (478)
T ss_pred HhHHHHHHHHHHHHhc----------------------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence 6666666666654321 122455566667778888888889999988888884
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHH
Q 005000 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTA 419 (720)
Q Consensus 345 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~ 419 (720)
. +...|..+--+|...++++.+..-+..+...--.|+ ..+|-.|.......|++..|.+.|+-.... +..++|.
T Consensus 356 ~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 356 Q-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred C-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 4 566677777777777777777766666655433232 335555666666667777777776655432 3345555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 005000 420 MIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 420 li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
+...-.+.|+.++|..++.....
T Consensus 435 LavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhcCchHHHHHHHHHhhh
Confidence 55555566666666666655544
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.81 E-value=0.00014 Score=76.19 Aligned_cols=440 Identities=14% Similarity=0.089 Sum_probs=203.5
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005000 93 IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172 (720)
Q Consensus 93 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 172 (720)
.+++...+.+.+..++. .+-...|....--.+...|+.++|....+..++.. ..+.+.|..+.-.+....++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555442 11222333332223344455555555544444422 12233444444444444555555555
Q ss_pred HhcC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCC-C
Q 005000 173 FDVS---YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI-V 248 (720)
Q Consensus 173 f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~ 248 (720)
|... .+.|...|.-+----.+.|+++.....-.+..+.. +-....|.....+.--.|+...|..+.+...+... .
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5432 22334444444444444455555544444444321 11233344444444455555555555555554431 2
Q ss_pred CChHHHHHHH------HHHHhcCCHHHHHHHHhhcCCC--C-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--cchH
Q 005000 249 PNLILENALT------DMYAACGEMGFALEIFGNIKNK--D-VISWTAIVTGYINRGQVDMARQYFDQMPERDY--VLWT 317 (720)
Q Consensus 249 ~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~ 317 (720)
|+...+.-.. ....+.|..++|.+.+...... | ...-.+-...+.+.+++++|..++..+..+++ +.|+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 3333332221 2233445555555555443331 1 11222334445566666666666666655433 2232
Q ss_pred H-HHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 318 A-MIDGYLRVNRFREAL-TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 318 ~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
. +..++.+--+.-+++ .+|....+.- +-.......-++......-.+....++....+.|+++ ++..+...|-.
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 2 222222222222232 4444433221 0000000000111111122233334444455555443 22333333322
Q ss_pred cCCHHH----HHHHHHhc--------------cCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 005000 396 CGDVEK----AQRVFREM--------------LRKDKFTWTA--MIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVG 454 (720)
Q Consensus 396 ~g~~~~----A~~~~~~~--------------~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 454 (720)
-...+- +..+...+ ..|....|+. ++..|-..|+++.|+.+++..+.. .|+.+ -|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 111110 11111111 1234455554 567788889999999999888864 66654 5555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CH--------HHHHHHH-
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NS--------IVWGALL- 524 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~--------~~~~~ll- 524 (720)
=.+.+.+.|++++|..++++..+ . -.||...-.--+.-..|+++.++|.++.....-.. +. -.|-.+-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~e-l-D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQE-L-DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHh-c-cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh
Confidence 56778889999999999888752 1 13454444455566678888998888876652111 21 2343332
Q ss_pred -HHHHhcCCHHHHHHHHHHH
Q 005000 525 -GACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 525 -~~~~~~g~~~~a~~~~~~~ 543 (720)
.+|.+.|++.+|..-+..+
T Consensus 489 g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 489 GEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHHHHHHHHHHHHHHhhH
Confidence 4577777777665544443
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=2.5e-05 Score=83.56 Aligned_cols=426 Identities=13% Similarity=0.097 Sum_probs=209.1
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCe--e-eHHHHHHHHHhC-----C
Q 005000 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV--V-TWNAMFSGYKRV-----K 195 (720)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~-~~~~li~~~~~~-----g 195 (720)
.+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..++..+..+|+ . -|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 345566666666666553332 222334455556666666777777666666554322 2 233333333111 2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc-hHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL-DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274 (720)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 274 (720)
+.+...++|+++...- |.......+.-.+.....+ ..+...+...++.|++ .+++.|-..|....+..-...++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3455556666655442 3322222221111111111 2333444444555543 23444445555433333333333
Q ss_pred hhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCcc--chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHH
Q 005000 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ-MPERDYV--LWTAMIDGYLRVNRFREALTLFREMQTSNIRPD-EFT 350 (720)
Q Consensus 275 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 350 (720)
...... +...+.+.... .. -..|... ++.-+...|-..|++++|+++.++.++. .|+ ...
T Consensus 167 ~~~~~~-----------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 167 EEYVNS-----------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred HHHHHh-----------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 322110 00000000000 00 0011222 3345566677778888888888877765 344 445
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC------H----HHHH--
Q 005000 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD------K----FTWT-- 418 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~----~~~~-- 418 (720)
|..-...+-+.|++..|....+.+...+ ..|..+-+-.+..+.++|++++|.+++....+++ . ..|-
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 6666666777888888888887777765 4566666777777778888888888877665543 1 1332
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCC-------------ChHHHHHHHHHHHhcCC-------hhhHHHHHHHHH
Q 005000 419 AMIVGLAINGHGDKSLDMFSQMLRA--SIIP-------------DEVTYVGVLSACTHTGM-------VDEGREYFADMT 476 (720)
Q Consensus 419 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p-------------~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~ 476 (720)
-...+|.+.|++..|++.|....+. .+.- ...+|..++...-+... ...|.+++-.+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 2356777888888777776655431 1111 12233333332222111 123344443332
Q ss_pred HHcCCCc-----------cHHHHHHHHHHH---HhcCCHHHHHHHHH-----------hC----C--CCCCHHHHHHHHH
Q 005000 477 IQHGIEP-----------NEAHYGCMVDLL---GRAGHLNEALEVIK-----------NM----P--MKPNSIVWGALLG 525 (720)
Q Consensus 477 ~~~~~~p-----------~~~~~~~li~~~---~~~g~~~eA~~~~~-----------~~----~--~~p~~~~~~~ll~ 525 (720)
..-.... +..--..+-.-- .+...-+++...-. +. + ..||+.- ..|+
T Consensus 390 d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~- 467 (517)
T PF12569_consen 390 DKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL- 467 (517)
T ss_pred cCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh-
Confidence 1100000 000000000000 01111111111110 00 1 1122211 1122
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
....=.++|.++++-+.+..|++..++..--.+|.+.|++--|.+-+.+
T Consensus 468 --~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 468 --KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred --cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 2334578899999999999999999999999999999999988876543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=1.4e-05 Score=76.88 Aligned_cols=294 Identities=19% Similarity=0.178 Sum_probs=148.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHH---HHHHhcCCHHHHHHHHhhCCCCCccchHHHH---HHHHhcCChh
Q 005000 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIV---TGYINRGQVDMARQYFDQMPERDYVLWTAMI---DGYLRVNRFR 330 (720)
Q Consensus 257 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~ 330 (720)
|...+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-|.+..+..+..+.+-| ..+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444455566666666666666666665555543 2355556655555555555443333333322 3456667777
Q ss_pred HHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh
Q 005000 331 EALTLFREMQTSNIRPDEF----------------TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394 (720)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 394 (720)
+|..-|+..++.. |+.. .....+..+...|+...+......+++.. +.|...+..-..+|.
T Consensus 124 ~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 7777777666542 2111 11122223344556666666666655543 345556666666666
Q ss_pred hcCCHHHHHHHHHhc---cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHH
Q 005000 395 KCGDVEKAQRVFREM---LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 470 (720)
..|++..|+.-++.. ...+....--+-..+...|+.+.++...++-++ +.||.. .|... ..+.+..+
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~Y-------KklkKv~K 271 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFY-------KKLKKVVK 271 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHH-------HHHHHHHH
Confidence 777776666555544 233455555555566666666666666666655 355542 11100 00111111
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN--SIV---WGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~---~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
.++.|. ...+.++|.++++-.++. ...|. .+. +..+-..++..+++.+|++...+++
T Consensus 272 ~les~e-----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 272 SLESAE-----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHH-----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 111111 122334444444444332 23332 111 2223334455556666666666666
Q ss_pred hcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+++|+|..++...+.+|.-..+|++|+.-++...+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666665555543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.8e-06 Score=83.58 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=140.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHH----------HHHHHH
Q 005000 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF----------TWTAMI 421 (720)
Q Consensus 352 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 421 (720)
..+.++..+..+++.+.+-+....+.. .++.-++.....|...|.+.+.....+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556667777777777666654 55556667777788877777776666655443211 122234
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCC
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA-HYGCMVDLLGRAGH 500 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~ 500 (720)
.+|.+.++++.|+..|++....-..||..+ +....+++....+... -+.|... -...-..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888766544544322 2223344444443321 2334321 11122556778888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 501 LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+.+|...+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|..=+-++....+|++|.+.+.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887 4445 677788888888888888888888888888888888888888888888888888888887766
Q ss_pred hC
Q 005000 579 DR 580 (720)
Q Consensus 579 ~~ 580 (720)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 54
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=0.00078 Score=72.34 Aligned_cols=202 Identities=10% Similarity=0.072 Sum_probs=140.7
Q ss_pred ChhHhhHHhcccccccCChHHHHHHhccCCC-------------CC-cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCC
Q 005000 47 NPTVQNKLVTFCCSEKGDMKYACKVFRKIPR-------------PS-VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112 (720)
Q Consensus 47 ~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~-------------~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 112 (720)
+..+|..+..| +.+..+++-|.-.+..|.. ++ ...--+. .-.+.|..++|..+|++-.+
T Consensus 756 S~~vW~nmA~M-cVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv--LAieLgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASM-CVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV--LAIELGMLEEALILYRQCKR---- 828 (1416)
T ss_pred hhHHHHHHHHH-hhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH--HHHHHhhHHHHHHHHHHHHH----
Confidence 45789999999 8999999888888776642 22 1111111 12456889999999998876
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---------------
Q 005000 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY--------------- 177 (720)
Q Consensus 113 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------------- 177 (720)
|-.+=+.|-..|.|++|.++-+.--+..+. .+|.....-+-..++++.|++.|++..
T Consensus 829 -----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 829 -----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 334445667789999998887653332222 233333444445678888888887432
Q ss_pred --------CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCC
Q 005000 178 --------KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249 (720)
Q Consensus 178 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 249 (720)
.+|...|.-....+-..|+.+.|+.+|...++ |-++++..+-.|+.++|.++-++ ..
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sg 965 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SG 965 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cc
Confidence 13455566666666677889999988887654 45666777778999988887654 23
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIK 278 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 278 (720)
|....-.|..+|-..|++.+|...|.+..
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777789999999999999999998754
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=2.5e-07 Score=91.96 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCCH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY---GCMVDLLGRAGHL 501 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~ 501 (720)
...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|. .+..|.... .+.+..+.-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhH
Confidence 3345555555555431 233344444555556666666666666653 223332211 1222222223356
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCCh-hHHHHHHHHHH
Q 005000 502 NEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW-DNFRELRQMIL 578 (720)
Q Consensus 502 ~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 578 (720)
.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+.+..++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6666666666 23356666677777777777777777777777777777777777777777777776 44555666555
Q ss_pred h
Q 005000 579 D 579 (720)
Q Consensus 579 ~ 579 (720)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=2.4e-05 Score=81.92 Aligned_cols=260 Identities=10% Similarity=-0.021 Sum_probs=154.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS---ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
...+...|++++|...+++..+.. +.|...+.. ........+....+.+.... .....+........+...+...
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345567788888888888877652 223323321 11111123344444444333 1111122233444566778889
Q ss_pred CCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHHhcCChhhHHH
Q 005000 397 GDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI-IPDE--VTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 397 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 470 (720)
|++++|...+++..+ .+...+..+...+...|++++|+..+++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999888753 2566777888888889999999999988876432 1232 234567777888899999999
Q ss_pred HHHHHHHHcCCCccHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 471 YFADMTIQHGIEPNEAHY-G--CMVDLLGRAGHLNEALEV---IKNM-PMKP---NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
++++........+..... + .+...+...|..+.+.+. .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 998874221111222111 1 233334444433322222 1111 1101 1222235666778889999999998
Q ss_pred HHHHhcC-C--------CCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 541 KQILELD-P--------DNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 541 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+.+.... . .........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876532 1 134566778888899999999999988887644
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.69 E-value=9.8e-06 Score=74.05 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=100.1
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHH
Q 005000 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSL 434 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 434 (720)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|+... ..+-...|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333344444444444444332 3334455555555666666666666665543 223445555555556666666666
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005000 435 DMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM- 511 (720)
Q Consensus 435 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~- 511 (720)
..|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+ ..| .......+.+...+.|++-.|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 66666555321111 13555555555566666666666665542 122 2344455566666666666666666655
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 512 -PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 512 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
...++..+.--.+..-...||.+.+-+.-.++....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2234555444445555566666666666666666666543
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.67 E-value=2.3e-05 Score=83.89 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
++.-+...+.+.|++++|.++.++.+ ...|+ ++.|..-...|-+.|++++|.+.++.. .+.+ |...-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 33444555666777777777777665 22444 566666667777777777777777666 3333 444444455556
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CCC-------cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 528 RVHRDAEMAEMAAKQILELD--PDN-------EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+.|++++|...+......+ |.. .....-.+.+|.+.|++..|.+.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67777777777766665443 211 11223456777777777777776655543
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=1.2e-06 Score=87.27 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=141.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCK 395 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~ 395 (720)
.-+.+++...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|..
T Consensus 39 ~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 345556666666654432 222222 444444433433333323333332222222111211 233333344456777
Q ss_pred cCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGREY 471 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~ 471 (720)
.|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|..+
T Consensus 115 ~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 89999998888765 56666777788999999999999999999874 334 444445555432 3469999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCC
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA-EMAEMAAKQILELDP 548 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p 548 (720)
|+++. ....+++.+.+.+..+....|++++|.+++++. ...| ++.++..++......|+. +.+.+...++....|
T Consensus 190 f~El~--~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 190 FEELS--DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHH--CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHH--hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 99986 345678888999999999999999999999886 4455 566777888888888887 778888898888899
Q ss_pred CCc
Q 005000 549 DNE 551 (720)
Q Consensus 549 ~~~ 551 (720)
+.+
T Consensus 268 ~h~ 270 (290)
T PF04733_consen 268 NHP 270 (290)
T ss_dssp TSH
T ss_pred CCh
Confidence 864
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.002 Score=70.85 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 498 ~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
-+.++.|.++-++. ..+..|..+..+-.+.|.+.+|++-|-+ .+||+.|...+++..+.|+|++-.+.+...
T Consensus 1088 i~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455555555444 2567899999999999998888877744 467899999999999999999999998877
Q ss_pred HhCCC
Q 005000 578 LDRGI 582 (720)
Q Consensus 578 ~~~~~ 582 (720)
+++.-
T Consensus 1160 Rkk~~ 1164 (1666)
T KOG0985|consen 1160 RKKVR 1164 (1666)
T ss_pred HHhhc
Confidence 76553
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.59 E-value=0.00052 Score=70.47 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=46.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCC-CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005000 79 SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157 (720)
Q Consensus 79 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 157 (720)
|+.+|+.||+-+..+ ..+++.+.+++|... .| ....|..-++.-.+..+++....+|.+.+..-+ +...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 666777777765544 667777777777652 33 334566666666666777777777777665443 344455444
Q ss_pred H
Q 005000 158 S 158 (720)
Q Consensus 158 ~ 158 (720)
+
T Consensus 94 ~ 94 (656)
T KOG1914|consen 94 S 94 (656)
T ss_pred H
Confidence 4
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=6.2e-05 Score=82.25 Aligned_cols=422 Identities=12% Similarity=0.051 Sum_probs=245.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH
Q 005000 150 VFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSA 225 (720)
Q Consensus 150 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~ 225 (720)
...|..|...|+...+...|.+.|+...+ .|..+|......|++..+++.|..+.-..-+.. ...-...|...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34678888888888888888888886554 456778888888888888888888732221110 00111122233334
Q ss_pred HhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHH---HHHHHHhcCCHHHHH
Q 005000 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA---IVTGYINRGQVDMAR 302 (720)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~ 302 (720)
+...++...+..-++...+..+ -|...|..|..+|.++|++..|.++|.+...-++.+|-. .....+..|.+.+|.
T Consensus 572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5577788888888887777643 377788888888988898888888887766544433322 122234566777776
Q ss_pred HHHhhCCCC----------CccchHHHHHHHHhcCCh-------hHHHHHHHHHHHCC--------------------C-
Q 005000 303 QYFDQMPER----------DYVLWTAMIDGYLRVNRF-------REALTLFREMQTSN--------------------I- 344 (720)
Q Consensus 303 ~~f~~~~~~----------~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g--------------------~- 344 (720)
..+..+... -..++-.+...+.-.|-. +++++.|.-..... +
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 666554321 011111111112222222 22222222211111 1
Q ss_pred --CCCHHHHHHHHHHHhccCcH---HH-HHHHHHHHHHcCCCCChhHhhHHhhhhhh----cC----CHHHHHHHHHhcc
Q 005000 345 --RPDEFTIVSILTACANLGAL---EL-GEWVKTYIDKNKVKNDIFVGNALIDMYCK----CG----DVEKAQRVFREML 410 (720)
Q Consensus 345 --~p~~~t~~~ll~~~~~~~~~---~~-a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~~~ 410 (720)
.|+......+..-.-..+.. +. ....-.......+..+...|..|+.-|.+ +| +...|...+...+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 22222222222212222221 10 00011111111122234444444444433 22 2345666666654
Q ss_pred ---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHH
Q 005000 411 ---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEA 486 (720)
Q Consensus 411 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 486 (720)
..+...||+|... ...|++.-|...|-+-.... +-+..+|..+.-.|....+++.|...|...+ .+.| +..
T Consensus 811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~ 885 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLV 885 (1238)
T ss_pred HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhH
Confidence 3577889988766 55677777776666655542 3355688888888889999999999998775 4455 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHH----------HHHHHHHHhcCCC
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-------PMKPNSIVWGALLGACRVHRDAEMA----------EMAAKQILELDPD 549 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a----------~~~~~~~~~~~p~ 549 (720)
.|--..-.....|+.-++..+|..- +.-|+..-|.....-...+|+.+.- --+.++.++-.|+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 5655555556778888888887652 2335666665555555566665554 4455555667899
Q ss_pred CcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 550 NEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..+|...+......+.+++|.+...+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876655
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.00061 Score=81.13 Aligned_cols=232 Identities=9% Similarity=0.019 Sum_probs=133.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHH----cCCCC---Ch
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNI---RPD--EFTIVSILTACANLGALELGEWVKTYIDK----NKVKN---DI 383 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~~~---~~ 383 (720)
++.+...+...|++++|...+.+.....- .+. ..++..+...+...|+++.|...+..... .+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34555566677888888777777653210 111 22334444556677788777777665543 22111 12
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccC------C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChHHH--
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLR------K--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTY-- 452 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~-- 452 (720)
..+..+...+...|++++|...+.+... + ....+..+...+...|+.++|.+.+++....... .....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2344455566677888888877776522 1 1223444556677788888888888777542111 011111
Q ss_pred ---HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-H
Q 005000 453 ---VGVLSACTHTGMVDEGREYFADMTIQHGIEPNE----AHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-S 517 (720)
Q Consensus 453 ---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~ 517 (720)
...+..+...|+.+.+.+++..... ...... ..+..+..++...|+.++|...+++. +..++ .
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0112334457788888888765431 111111 11345666778888888888887765 11221 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+...+..++...|+.++|...+.+++++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 34555667788888888888888888887543
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=7.5e-06 Score=80.08 Aligned_cols=180 Identities=13% Similarity=0.035 Sum_probs=120.6
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DK---FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV---- 450 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 450 (720)
.....+..+...|.+.|++++|...|+++... +. ..|..+...+...|++++|+..++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34556667777788888888888888877432 22 356777788888888888888888888743 3221
Q ss_pred HHHHHHHHHHhc--------CChhhHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 005000 451 TYVGVLSACTHT--------GMVDEGREYFADMTIQHGIEPNEA-HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521 (720)
Q Consensus 451 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~ 521 (720)
++..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444455543 6677788888777633 33322 22111111 1011100 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+...+...|++++|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567889999999999999999987764 468899999999999999999998887654
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=9.4e-05 Score=88.01 Aligned_cols=322 Identities=11% Similarity=0.021 Sum_probs=207.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---c-----cchHHHHHHH
Q 005000 260 MYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQMPE----RD---Y-----VLWTAMIDGY 323 (720)
Q Consensus 260 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~---~-----~~~~~li~~~ 323 (720)
.....|+++.+...++.++. .+..........+...|++++|...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34556777777777777642 2232233344455677888888877765421 11 1 1112233456
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhHhhHHhhhhh
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDE----FTIVSILTACANLGALELGEWVKTYIDKN----KVK-NDIFVGNALIDMYC 394 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~y~ 394 (720)
...|++++|...+++....-...+. .....+...+...|+++.|...+...... +.. ........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999988763212222 23344445567789999998888777643 211 11234556677888
Q ss_pred hcCCHHHHHHHHHhccCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--hHHHHHHHHHH
Q 005000 395 KCGDVEKAQRVFREMLRK-----------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPD--EVTYVGVLSAC 459 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~ 459 (720)
..|++++|...+++.... ....+..+...+...|++++|...+++.... ...|. ..++..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999988775321 1223445556677789999999999987653 11222 23444556677
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHY-----GCMVDLLGRAGHLNEALEVIKNMPMK--PNS----IVWGALLGACR 528 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~~~~~--p~~----~~~~~ll~~~~ 528 (720)
...|+.++|.+.+..+.....-......+ ......+...|+.++|.+.+...... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875321111111111 11224456689999999998776211 111 12345667788
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 529 VHRDAEMAEMAAKQILELDP------DNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..|+.++|...++++++... ....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999987521 223467788999999999999999999887644
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.2e-07 Score=59.95 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=27.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 177 (720)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=2.2e-06 Score=76.11 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=81.0
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005000 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-P 512 (720)
Q Consensus 435 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 512 (720)
.+|++.++ +.|+. +.....++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 24443 3345556677777777777777765 2233 5666677777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 513 MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 513 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
..| +...|..+..++...|++++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 56677777777777888888888888888888887777776666543
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=9.9e-05 Score=77.31 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=104.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CH--HHHHHHHHHHHH
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DK--FTWTAMIVGLAI 426 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~ 426 (720)
+...+...|+++.|...+....+.. +.+...+..+...|...|++++|...+++.... +. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455566666666666665543 334455666677777777777777777765431 11 234556677777
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHH-H--HHHHHHHhcCChhhHHHH--HHHHHHHcCC-CccHHHHHHHHHHHHhcC
Q 005000 427 NGHGDKSLDMFSQMLRASI-IPDEVTY-V--GVLSACTHTGMVDEGREY--FADMTIQHGI-EPNEAHYGCMVDLLGRAG 499 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~li~~~~~~g 499 (720)
.|+.++|+.++++...... .+..... + .++.-+...|..+.+.+. .........- ..........+.++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 8888888888877754322 1111111 1 233333444544444333 1111101100 011112224566677888
Q ss_pred CHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 500 HLNEALEVIKNMP--MKP---N------SIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 500 ~~~eA~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+.++|..+++.+. .+. . ....-...-++...|+.+.|.+.+..++.+-
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888887761 111 1 1111222244678899999999888887653
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=7e-06 Score=77.09 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=107.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
..|...|+++......+++.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777665444322221 11 0 12225566677777766652 2245778888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGA-CRVHRD--AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
++|...+++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 5566 67777777776 467676 58999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 005000 577 ILDRG 581 (720)
Q Consensus 577 m~~~~ 581 (720)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 87643
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00024 Score=73.03 Aligned_cols=437 Identities=12% Similarity=0.024 Sum_probs=239.8
Q ss_pred HHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCh
Q 005000 88 KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS-VFVQNALISTYCLCGEV 166 (720)
Q Consensus 88 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 166 (720)
.+....|+++.|+.+|-+.+... ++|.+-|+.-..+++..|+++.|.+=-...++. .|+ ..-|+.+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567889999999998888765 348888888889999999998888766666653 355 34577777777778899
Q ss_pred HHHHHHHhcCCCCC---eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH-----HHhcCCCchHHHHH
Q 005000 167 DMARGIFDVSYKDD---VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS-----ACAKLKDLDVGKRA 238 (720)
Q Consensus 167 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-----~~~~~~~~~~a~~~ 238 (720)
++|..-|.+..+.| ...++-+..++ ..+.+. |... -+...+..+.. ..... ..-..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~---~~~~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSD---PAYVKI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhhc---cCcHHHHHhhcChhhhhhhcc---HHHHHH
Confidence 99999988776543 34444444444 111111 1110 01111111110 00000 011111
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH--hhCCCC-----
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF--DQMPER----- 311 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f--~~~~~~----- 311 (720)
+..+.+. |. =+..|..-.++..|.-++...... .+...|....+...- ..+..+
T Consensus 152 l~~~~~~---p~------~l~~~l~d~r~m~a~~~l~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (539)
T KOG0548|consen 152 LEIIQKN---PT------SLKLYLNDPRLMKADGQLKGVDEL----------LFYASGIEILASMAEPCKQEHNGFPIIE 212 (539)
T ss_pred HHHhhcC---cH------hhhcccccHHHHHHHHHHhcCccc----------cccccccccCCCCCCcccccCCCCCccc
Confidence 1111111 10 011122211122222222111100 000000000000000 000000
Q ss_pred ----------CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 005000 312 ----------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381 (720)
Q Consensus 312 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 381 (720)
-..-...+.+...+..+++.|++-+....+.. -+..-++..-.++...|........-...++.|-..
T Consensus 213 d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 213 DNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 00123445556666666777777776666543 233333344444555555555544444433333111
Q ss_pred C------hhHhhHHhhhhhhcCCHHHHHHHHHhccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HH
Q 005000 382 D------IFVGNALIDMYCKCGDVEKAQRVFREMLRK--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TY 452 (720)
Q Consensus 382 ~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 452 (720)
- ......+..+|.+.++++.|...|.+.... +... ..+....++++...+...- +.|+.. -.
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~ 361 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEE 361 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHH
Confidence 0 011222445788889999999999886422 2111 1223344555555444433 344432 12
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVH 530 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 530 (720)
..-...+.+.|++..|...|.++++. . +-|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..++...
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 22356788999999999999998732 2 557889999999999999999999877765 45564 44565566677788
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.+++.|.+.|++.++.+|++......+...+..+...+...++.
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 89999999999999999998887777777776543333344443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=1.4e-05 Score=90.09 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=168.6
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
+.+...|-..+......+++++|++++++.... -...|.++++.....|.-+...++|+++.+.- . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 455677888888889999999999999988532 24579999988888898889999999998742 1 2356
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP---NSIVWGALLGAC 527 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~ 527 (720)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..+++++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998777 66788999999999999999999999886 2223 344555666667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
.++|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999887764
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=2.4e-06 Score=75.79 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
.+++... .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3454443 33455 3556788999999999999999997 5556 78899999999999999999999999999999
Q ss_pred CCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|+++.++..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=5.5e-06 Score=72.15 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+.+..-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556677788999999999999987 5666 6778999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHh
Q 005000 562 AACNRWDNFRELRQMILD 579 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~ 579 (720)
...|+.+.|++-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998875
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=4.6e-07 Score=57.24 Aligned_cols=32 Identities=34% Similarity=0.678 Sum_probs=23.2
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 480 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=1.6e-05 Score=84.24 Aligned_cols=210 Identities=16% Similarity=0.145 Sum_probs=111.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
+...+.+.|-..+|..+|+++ ..|..+|.+|...|+..+|..+..+-.+. +
T Consensus 404 laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~---------------------- 454 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--D---------------------- 454 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--C----------------------
Confidence 334444555555555555543 56777777788877777777776666552 3
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
|+...|..|.+......-+++|.++++....+--..|+.. ...+++++++.+.|+.-.+.. .-
T Consensus 455 -------------~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-pl 517 (777)
T KOG1128|consen 455 -------------PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PL 517 (777)
T ss_pred -------------CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-cc
Confidence 4444444555544444445666666655432211111111 122466666666666554421 11
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALL 524 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll 524 (720)
-..||-....+..+.++++.|.+.|..-. ...| +...||.+-.+|.+.|+..+|...+++. +.+ .+...|...+
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 22355555555556666666666665543 2333 3455555555555555555555555554 111 1334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 005000 525 GACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
-...+-|.++.|++++.+++++
T Consensus 595 lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHh
Confidence 5556666666666666666554
No 115
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.0001 Score=74.45 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=113.4
Q ss_pred hhHHhhhhhhcC-CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 386 GNALIDMYCKCG-DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHG--DKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 386 ~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++++... -|..+|.....++
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l 152 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 333333334444 45667777666542 2444566554444455542 566777777776432 2446777777777
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA---GH----LNEALEVIKNM-PMKP-NSIVWGALLGACRVH 530 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 530 (720)
.+.|+++++++.++++.+. + .-+...|+....++.+. |. .+++.++..++ ...| |...|+.+.+.+...
T Consensus 153 ~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 7777888888888877632 2 23455565555555443 22 24566666444 5566 678899998888774
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc
Q 005000 531 ----RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564 (720)
Q Consensus 531 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (720)
++..+|...+.+++..+|+++.++..|+++|...
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred CcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999864
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.37 E-value=0.0029 Score=61.38 Aligned_cols=234 Identities=13% Similarity=0.056 Sum_probs=135.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 398 (720)
.+..+...|+...|+.....+++.. +.|...+..-..+|...|.+..|..=+..+.+..- .+....--+-..+.+.|+
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhh
Confidence 3444556677777777777776642 44555666666667777777777665555555442 234444456677778888
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 399 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
.+.++...++..+-|+..-. +|.......+..+.++.|.+ ....+.+.++.+-.+...
T Consensus 239 ~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vl-- 296 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVL-- 296 (504)
T ss_pred HHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHH--
Confidence 88888888877544332110 11111112222222222222 122334444444444433
Q ss_pred cCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 479 HGIEPN-----EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 479 ~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
...|. ...+..+-..|...|++-+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|.
T Consensus 297 -k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 297 -KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred -hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 12333 122334455667778888888877775 56664 67777777888888899999999999999999875
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCc
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPG 587 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 587 (720)
.+-.- .+.|.++.+..-++..-+..|
T Consensus 376 ~~reG----------le~Akrlkkqs~kRDYYKILG 401 (504)
T KOG0624|consen 376 RAREG----------LERAKRLKKQSGKRDYYKILG 401 (504)
T ss_pred HHHHH----------HHHHHHHHHHhccchHHHHhh
Confidence 43221 355666655555444433333
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=5.5e-05 Score=84.20 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGC 490 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 490 (720)
++..+-.|.....+.|..++|+.+++...+. .||. .....+..++.+.+.+++|....++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 4666777777777888888888888887773 6666 356667777788888888888887765 2334 4566667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
+..++.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|..+|+++++...+-...|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7777888888888888888772 334 367777788888888888888888888887765543443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.6e-05 Score=71.99 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=101.0
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 005000 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGAL 523 (720)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l 523 (720)
.|+......+-.++...|+-+....+..... .....+......++....+.|++.+|...+.+. .-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4443322556667777788777777776653 223335555666888888888888888888887 344578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.-+|-+.|+++.|...+.+++++.|+++.++..|+..|.-.|++++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888887776544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=5.3e-05 Score=74.04 Aligned_cols=183 Identities=12% Similarity=0.065 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-C-ChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC---H---HHH
Q 005000 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-N-DIFVGNALIDMYCKCGDVEKAQRVFREMLRKD---K---FTW 417 (720)
Q Consensus 346 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~---~~~ 417 (720)
.....+......+...|+++.|...+..+.+.... + ...++..+...|.+.|++++|...|+.+.+.+ . ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777777888999999999999998875421 1 12466778899999999999999999985431 2 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHH
Q 005000 418 TAMIVGLAIN--------GHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488 (720)
Q Consensus 418 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 488 (720)
..+..++.+. |+.++|++.|+++... .|+.. ....+... .. . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHH
Confidence 5556666654 7889999999999875 45542 22211111 00 0 0000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
..+.+.|.+.|++++|...+++. +-.| ....|..+..++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667889999999999998887 2233 3568889999999999999999988887766553
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=6.3e-05 Score=70.65 Aligned_cols=154 Identities=11% Similarity=0.109 Sum_probs=112.2
Q ss_pred hhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776654443322211 01122566677787888777753 345578888888899999999999
Q ss_pred HHHHHHHHHcCCCc-cHHHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 470 EYFADMTIQHGIEP-NEAHYGCMVDL-LGRAGH--LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 470 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
..|++.. .+.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999876 2344 67777788876 467777 58999999987 5566 6778888888999999999999999999
Q ss_pred HhcCCCCcchHH
Q 005000 544 LELDPDNEAVYV 555 (720)
Q Consensus 544 ~~~~p~~~~~~~ 555 (720)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2e-05 Score=83.40 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=144.6
Q ss_pred CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 378 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
+++|-...-..+.+.+.++|-...|..+|++. ..|.-.|-+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45566666677889999999999999999976 5788889999999999999999988887 4788889998888
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
......-+++|.++++....+ .-..+.....+.++++++.+.++.. .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788888888765422 1111222233467778887777764 5555 56677777777777888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|.+.|.+.+.++|++...+++++.+|.+.|+-.+|...+++..+-.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888777776655
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=3.5e-05 Score=79.63 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=136.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHH
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
.++|+..+|.-.|+..++.. +-+...|..|-..-+..++-..|...+....+.. +.+..+.-+|.-.|...|.-.+|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 44455555555555544432 2223333333333444444444444444444433 334445555555566566555666
Q ss_pred HHHHhccCCC-HHHHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 404 RVFREMLRKD-KFTWTAMI---------VGLAINGHGDKSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 404 ~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
+.++.-.... ...|...- ..+..........++|-++.. .+.++|......|.-.|--.|.+++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6555442110 00000000 011111122344455555544 443456666666666788889999999999
Q ss_pred HHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 473 ADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 473 ~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+.+. .++| |...||-|...++...+.+||...|+++ .++|. +.++..|.-+|...|.+++|...+-.++.+.+.
T Consensus 454 ~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9886 4566 5778999999999999999999999998 78897 568899999999999999999999999987654
No 123
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00019 Score=67.95 Aligned_cols=307 Identities=12% Similarity=0.094 Sum_probs=175.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--cchHH-HHHHHHhcC
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYFDQMPERDY--VLWTA-MIDGYLRVN 327 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~-li~~~~~~g 327 (720)
+++.+.-+.+..++++|.+++..-.++ +....+.+...|....++..|-..++++...-+ .-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555567777888888887766553 445566777778888888888888877654322 12221 234556677
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIRPDEFTIVSILTAC--ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 405 (720)
.+.+|+++...|... |+...-..-+.+. ...+++..++.+..+... +.+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHH
Confidence 788888887777643 2222211112221 233444444544444322 12333334444445566777777777
Q ss_pred HHhccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC
Q 005000 406 FREMLRK----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481 (720)
Q Consensus 406 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 481 (720)
|+...+- ....||.-+ ++.+.|++..|+++..+.++.|++-....-..+..--.....+.....+....
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------ 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA------ 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH------
Confidence 7666432 344555443 33445666777777777776665422211000000000000000111111111
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMP----MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
=++.+|.-...+.+.|+++.|.+.+..|| .+.|++|...+.-. -..+++..+.+-++-+++++|-.+.++..+
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence 02234444455778999999999999994 33577887665432 234566677777888889999888999999
Q ss_pred HhHhhhcCChhHHHHHHHH
Q 005000 558 CNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~ 576 (720)
.-+|++..-++-|..++-+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 9999999999988887643
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.00041 Score=70.74 Aligned_cols=177 Identities=17% Similarity=0.084 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 005000 397 GDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
.++.++...-+.++.. +.......+.+.........+..++.+-.+. .-...-| ...-.....|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~Y-G~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQY-GRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHH-HHHHHHHHhcccchHHH
Confidence 4556666666666432 4444555555433332222232222222221 1111222 23335567788888998
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
.+..+.. ..+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+-++..++.+.|++.+|+..+++....+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 8888763 33445666667788889999999999998887 56675 67778888889999999999999999888899
Q ss_pred CCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 549 DNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+|+..|..|+.+|..+|+..++...+.++.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999888888888888777766554
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=0.00011 Score=68.93 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 497 (720)
...-..+...|+.+.+..+....... ..-|.......+......|++.+|...|.+.. ..-++|...|+.+.-.|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHH
Confidence 33445556666666666665554332 11122333345666667777777777777664 3445667777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 498 AGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++..+....+.+..+-..|+-+....|++++|+.+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777776665 4444 45666777777777777777777777777777777777777777777777777777653
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=0.00018 Score=81.53 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=172.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-ccchH
Q 005000 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNK--------DVISWTAIVTGYINRGQVDMARQYFDQMPER-D-YVLWT 317 (720)
Q Consensus 248 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~-~~~~~ 317 (720)
+-+...|-..|......+++++|++++++.... -...|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 335667777888888888888888888887642 2356888888888888888888888887654 3 34688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhhc
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKC 396 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~ 396 (720)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++..+.+.-.. ..+....-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999876 3456677888888888988889999999888875322 2455666777888899
Q ss_pred CCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhH
Q 005000 397 GDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 468 (720)
|+.+.++.+|+..... -...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..-...|+-+..
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 9999999999998643 5678999999999999999999999999999988876 3555555544455554433
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=1.7e-05 Score=69.86 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556677777888888888888776 3344 56777788888888888888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877653
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3e-06 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=32.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCc
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 115 (720)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.00043 Score=77.25 Aligned_cols=143 Identities=10% Similarity=0.048 Sum_probs=115.1
Q ss_pred CCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 005000 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREML--RK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVG 454 (720)
Q Consensus 379 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 454 (720)
...+...+..|.....+.|.+++|..+++... .| +...+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45667888889999999999999999999885 34 5667888889999999999999999999985 56664 5555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLG 525 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~ 525 (720)
+..++...|.+++|..+|+++.. ...-+...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 66678899999999999999873 33334778888999999999999999999987 34455566665553
No 130
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=0.00032 Score=70.89 Aligned_cols=187 Identities=11% Similarity=0.085 Sum_probs=134.2
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAING-HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (720)
+-..+.+.++.++|+....++.+. +..+|+.-...+...| +.++++..++++.+...+ +..+|......+.+.|.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 334455567888888888887644 4456666666666667 579999999999986432 33456655555566665
Q ss_pred h--hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----H
Q 005000 465 V--DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH---RD----A 533 (720)
Q Consensus 465 ~--~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~ 533 (720)
. +++..+++.+.+. -+-+...|+...-++.+.|++++|++.++++ ...| |...|+.......+. |. .
T Consensus 122 ~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3 6778888877622 2336778888888899999999999999998 4444 778888877666554 22 3
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHhHhhhc----CChhHHHHHHHHHH
Q 005000 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAAC----NRWDNFRELRQMIL 578 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 578 (720)
+.......++++++|+|.+++..+..++... ++..+|.+......
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 5677888899999999999999999999873 34455666655543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.00052 Score=77.34 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=73.4
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
++..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555556666666666666655532 2445555555555555 555565555554432 333
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (720)
..++..+.++|..+.. ...-+...+-.+.... ....+..--..++--+-.-|...++++.+..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3455555555555541 1111111111111111 1111112223344444455666666777777777
Q ss_pred HHHhcCCCCcchHHHHHhHhh
Q 005000 542 QILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 542 ~~~~~~p~~~~~~~~l~~~~~ 562 (720)
.+++.+|.|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777776666666666655
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.5e-06 Score=53.60 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=32.6
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 216 (720)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00067 Score=69.23 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV-LSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGC 490 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 490 (720)
....+......+...|+.++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 3444444455566789999999999998875 6777666554 457889999999999999986 44666 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
+.++|.+.|++.+|..+++.. ..+.|+..|..|..+|...|+..++..+. +..|...|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHH
Confidence 889999999999999999987 33348899999999999999988776654 45677889999
Q ss_pred HHHHHHHHHHhCC
Q 005000 569 NFRELRQMILDRG 581 (720)
Q Consensus 569 ~a~~~~~~m~~~~ 581 (720)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888765
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=6.1e-05 Score=77.54 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 529 (720)
..+++..+...++++.|..+|+++.+. .|+. ...++..|...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345666677778888888888888632 3553 445777787888888888888876 3334 66677777788999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.++++.|..+++++.++.|++..+|..|+.+|.+.|+|++|...+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=8.7e-06 Score=51.81 Aligned_cols=34 Identities=15% Similarity=0.442 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCC
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 113 (720)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.044 Score=60.34 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=73.5
Q ss_pred HcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF--TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 168 (720)
...+++..|+.....+++.. ||. .|..+++++ .+.|..++|..+++.....+.. |..+...+-..|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34556677777777666642 443 355666665 4667777777666655554433 66667777777777777777
Q ss_pred HHHHHhcCCCC--CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005000 169 ARGIFDVSYKD--DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226 (720)
Q Consensus 169 A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 226 (720)
|..+++..... +...-..+..+|++.+.+.+-.+.--+|-+ .++-+.+.|-++++..
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 77777766553 333333444556666655443333222222 2333445555555443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.95 E-value=0.053 Score=59.74 Aligned_cols=160 Identities=9% Similarity=-0.010 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGD---KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
+-+.|+..+-+.++.. +|+-+++.-.... +-|..+-..++..|+-.|-+..|.+.|+.+. -..+..|..-| .+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd-IK~IQ~DTlgh-~~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLD-IKNIQTDTLGH-LIF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcc-hHHhhhccchH-HHH
Confidence 4566777777777664 4455555444432 2344556667778888888888888888774 34555544333 233
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCC
Q 005000 493 DLLGRAGHLNEALEVIKNMP--MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNR 566 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~ 566 (720)
..+...|++..+...++..- ...+..--.-++..-.++|.+.+-.+...---.+.-. -..+-....+.....++
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44556667766666665531 0101111111222233556555544333221122111 11223345556667777
Q ss_pred hhHHHHHHHHHH
Q 005000 567 WDNFRELRQMIL 578 (720)
Q Consensus 567 ~~~a~~~~~~m~ 578 (720)
.+.-.+.+..|+
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 777777777775
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.3e-05 Score=51.08 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=30.3
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 214 (720)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999887
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0056 Score=57.66 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL----GRA 498 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~ 498 (720)
.|...|++++|++..+... ..+.... =...+.+..+++-|.+.++.|. .+ .+..+.+-|..++ .-.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq---~i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQ---QI-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---cc-chHHHHHHHHHHHHHHhccc
Confidence 4555566666665555411 1111111 1223345555666666666664 11 2223333333333 335
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH-HHH
Q 005000 499 GHLNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE-LRQ 575 (720)
Q Consensus 499 g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~ 575 (720)
+...+|.-+|++| +..|+..+.+....+|...|++++|+.+++.++..+++++.+...++-.-...|+-.++.+ .+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5678888888888 3668888888888888899999999999999999999888888888777777787665544 334
Q ss_pred HH
Q 005000 576 MI 577 (720)
Q Consensus 576 ~m 577 (720)
..
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 33
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=0.00038 Score=61.23 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=88.0
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005000 436 MFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM 513 (720)
Q Consensus 436 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 513 (720)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34544 44556667788889999999999887632 2346778888899999999999999998887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 514 KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 514 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
.| +...|..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 5778888888999999999999999999999998755
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.0074 Score=68.31 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHc
Q 005000 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427 (720)
Q Consensus 348 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 427 (720)
...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|...
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~ 182 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKK 182 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhh
Confidence 3455566666777777777777777777766 56677777888888877 8888887776653 336666
Q ss_pred CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 506 (720)
+++.++.+++.++... .|+.. .|..++. .+....+..--+.++--+..-|-...+++++..
T Consensus 183 kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred hcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 7777888888887774 33332 2222222 222122222233344445555666667777777
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHH
Q 005000 507 VIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 507 ~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
+++.+ ...| |.....-++..|
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHH
Confidence 77665 4444 344444444444
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=0.00019 Score=74.38 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+...|++++|++.|.++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555554421 1113344444444555555555555555444 2333 33444444444555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 005000 536 AEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~ 556 (720)
|+..++++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555554444333
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.0006 Score=60.70 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-MKPNS----IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+...+...|++++|...|+... ..||. .....|...+...|++++|...++.. .-.+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3344555555555555555541 11221 23333445555555666555555441 112223445556666666666
Q ss_pred ChhHHHHHHHH
Q 005000 566 RWDNFRELRQM 576 (720)
Q Consensus 566 ~~~~a~~~~~~ 576 (720)
++++|...++.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666666554
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00012 Score=70.04 Aligned_cols=94 Identities=24% Similarity=0.301 Sum_probs=73.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAE 534 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 534 (720)
-..+.+++.+|...|.+++ .+.| |+..|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4567788888888888876 4555 5666667778888888888888877776 56674 568888888888888999
Q ss_pred HHHHHHHHHHhcCCCCcchH
Q 005000 535 MAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~ 554 (720)
+|++.|+++++++|++....
T Consensus 167 ~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhccCCCcHHHH
Confidence 99888899999988886433
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00062 Score=70.22 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=97.4
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (720)
..+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++.+... +-+...+..-...|...+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34566666678889999999999987777777778888888888889999999888652 22444555555567888999
Q ss_pred hhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 005000 466 DEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 515 (720)
+.|.++.+++. ...| +..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 251 ~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999998886 3455 45688899999999999999999999887544
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00068 Score=67.43 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=114.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH-------------H
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH-------------Y 488 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~ 488 (720)
..+...|+.++|.+.--..++.. .-+......-..++...++.+.|...|++.. .+.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 45677888888887776666532 1111222111223456778888888888764 44554322 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-PMKP-----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
..=.....+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|....+|...++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22234567899999999999987 4444 55566666677889999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 005000 563 ACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~~ 581 (720)
..++|++|.+-++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998887644
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00021 Score=57.80 Aligned_cols=92 Identities=26% Similarity=0.281 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888876 3344 44667777788888889999999999999888888888888899999999
Q ss_pred ChhHHHHHHHHHHh
Q 005000 566 RWDNFRELRQMILD 579 (720)
Q Consensus 566 ~~~~a~~~~~~m~~ 579 (720)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=5.4e-05 Score=57.53 Aligned_cols=64 Identities=25% Similarity=0.229 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC-ChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN-RWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 579 (720)
++.+|..+...+...|++++|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999888765
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=2.7e-05 Score=61.89 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 498 AGHLNEALEVIKNM-PMKP---NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 1222 344555566677777777777777776 666666656666667777777777777777
Q ss_pred HHH
Q 005000 574 RQM 576 (720)
Q Consensus 574 ~~~ 576 (720)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0039 Score=58.24 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=79.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL-SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 500 (720)
-+....|+.+.|...++++... + |...-...+= .-+-..|++++|+++++.+.++ -+.|..+|--=+-+.-..|+
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCC
Confidence 3444455555666666655553 1 3332111111 1133445666666666665522 13344445444445555555
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC---ChhHHHHHHH
Q 005000 501 LNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN---RWDNFRELRQ 575 (720)
Q Consensus 501 ~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~ 575 (720)
.-+|++-+.+. .+-.|...|.-+...|...|++++|.-.+++++=..|-++..+..+++++.-.| +.+-|++.+.
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554443 233466666666666666666666666666666666666666666666655443 3444445555
Q ss_pred HHHh
Q 005000 576 MILD 579 (720)
Q Consensus 576 ~m~~ 579 (720)
+..+
T Consensus 216 ~alk 219 (289)
T KOG3060|consen 216 RALK 219 (289)
T ss_pred HHHH
Confidence 4443
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0022 Score=59.79 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 427 NGHGDKSLDMFSQMLR---AS-IIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~---~g-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
..++++.++++.++.. .| ..|+.. .|-.+.-+....|..+-|...++.+..++ +-+..+-..-...+.-.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3456777777777664 34 556664 45566667788899999999999987544 22333333334457788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++|+++++.. ..+| |.+++---+......|+.-+|++.+...++..|.|..++.-|+.+|...|++++|.=-++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998 4455 7788888888888899999999999999999999999999999999999999999999888864
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0018 Score=57.59 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH--HHHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDE----VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE--AHYGCM 491 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l 491 (720)
..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+.. ....|+. ...-.+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 3334444 3677777777778777752 232 2333455667778888888888888763 2322221 233346
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 492 VDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
...+...|++++|+..++..+..+ ....+......+...|+.++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677788888888888887763222 44556666677888888888888887753
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.5e-05 Score=47.74 Aligned_cols=31 Identities=16% Similarity=0.535 Sum_probs=27.4
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCC
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 111 (720)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.8e-05 Score=47.54 Aligned_cols=31 Identities=42% Similarity=0.874 Sum_probs=26.5
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 212 (720)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999888764
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00041 Score=59.32 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHh
Q 005000 490 CMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIY 561 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 561 (720)
.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444445555554444444 11121 2233344444555555555555555555554443 23444555555
Q ss_pred hhcCChhHHHHHHHHHHh
Q 005000 562 AACNRWDNFRELRQMILD 579 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~ 579 (720)
.+.|++++|.+.++.+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 555555555555555444
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00069 Score=57.88 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALL 524 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll 524 (720)
++..+...+...|++++|.+.|..+.....-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455566667777777777777653321111 1344555777777778888888777776 22233 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888888899999999999988888875543
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00029 Score=67.40 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=77.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcC
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAG 499 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 499 (720)
.-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4567889999999999999985 44 55677778889999999999998887765 34553 578889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHH
Q 005000 500 HLNEALEVIKNM-PMKPNSIVWGAL 523 (720)
Q Consensus 500 ~~~eA~~~~~~~-~~~p~~~~~~~l 523 (720)
++++|.+.|++. .+.|+..+|-+=
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHH
Confidence 999999999887 788876666433
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.65 E-value=0.048 Score=54.29 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=164.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHH
Q 005000 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404 (720)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 404 (720)
-.|+++.|.+-|+.|...- +.-..-+..+.-..-+.|+.+.++++-...-..- +.-...+.++++..+..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence 4688888888888887521 1111223334444457788888888777665543 2234567788999999999999999
Q ss_pred HHHhc-----cCCCHH--HHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHH
Q 005000 405 VFREM-----LRKDKF--TWTAMIVGLA---INGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 405 ~~~~~-----~~~~~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
+.+.- .++++. .--.|+.+-+ -.-+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 99865 344433 2223332222 13345566655555444 577764 33445568899999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 474 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
.+- ..+|.+.++...+ +.|.|+. ++.-+++. .++| +..+-.++..+-...|++..|..-.+.+....|
T Consensus 288 ~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 886 4577776654333 3455543 33333322 3566 566777888888999999999999999999999
Q ss_pred CCcchHHHHHhHhhhc-CChhHHHHHHHHHHhCC
Q 005000 549 DNEAVYVLLCNIYAAC-NRWDNFRELRQMILDRG 581 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 581 (720)
.. +.|.+|+++-... |+-.+++..+.+..+..
T Consensus 361 re-s~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 361 RE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 74 7899999998655 99999998877766543
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.63 E-value=0.12 Score=53.95 Aligned_cols=161 Identities=9% Similarity=0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
..+|-..++.-.+..-...|..+|.+..+.+..+ +....++++. |...++.+-|.++|+.=.+++| -++..-.+.+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~--d~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFG--DSPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 3467777777778888899999999999988888 4445555554 4456889999999987665554 3445556788
Q ss_pred HHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHhHhhh
Q 005000 493 DLLGRAGHLNEALEVIKNMP---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN----EAVYVLLCNIYAA 563 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~ 563 (720)
+-+.+.|+-..|..+|++.. +.| ....|..++.-=..-|+...+..+-++....-|.+ ...-..+.+-|.-
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 99999999999999999872 344 35799999999999999999999998888766521 1233456667776
Q ss_pred cCChhHHHHHHHHH
Q 005000 564 CNRWDNFRELRQMI 577 (720)
Q Consensus 564 ~g~~~~a~~~~~~m 577 (720)
.+.+..-..-++.|
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 77665555444444
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0025 Score=68.95 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCh
Q 005000 412 KDKFTWTAMIVGLAIN--G---HGDKSLDMFSQMLRASIIPDE 449 (720)
Q Consensus 412 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~ 449 (720)
.|...|...+.+.... + +..+|..+|++.++. .|+.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~ 375 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDF 375 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCc
Confidence 4667777777664432 2 256788888888874 6665
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.0018 Score=59.59 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYG 489 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 489 (720)
....+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+.+... ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566666667777777777777777766433332 24566666667777777777777776652 223 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 5566666666655544333221 112677888888888888876 444444444444
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00016 Score=54.19 Aligned_cols=58 Identities=29% Similarity=0.287 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888877653
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.00064 Score=62.35 Aligned_cols=94 Identities=13% Similarity=-0.074 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
....|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456667777888889999999988887 23332 357889999999999999999999999999999988888888
Q ss_pred hHhh-------hcCChhHHHHHHHHH
Q 005000 559 NIYA-------ACNRWDNFRELRQMI 577 (720)
Q Consensus 559 ~~~~-------~~g~~~~a~~~~~~m 577 (720)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666544
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.00071 Score=62.31 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
...+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666777777777777777765 22222 3577888888889999999999999999999998888888888
Q ss_pred HhhhcCC
Q 005000 560 IYAACNR 566 (720)
Q Consensus 560 ~~~~~g~ 566 (720)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 165
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.027 Score=53.19 Aligned_cols=173 Identities=12% Similarity=0.088 Sum_probs=108.5
Q ss_pred HHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
+.+.......+......-...|...|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|.+- -+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 33333333333333333445577778888888877763322333333 33455666778888888888763 25567
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 005000 452 YVGVLSACTH----TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLG 525 (720)
Q Consensus 452 ~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~ 525 (720)
.+.|..++.+ .+.+..|.-+|++|.+ ...|+..+.+-+..+....|++++|..++++. ..+ .++.+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 7766666643 3557788888888853 35677777777777788888888888888877 222 35666655555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCc
Q 005000 526 ACRVHR-DAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 526 ~~~~~g-~~~~a~~~~~~~~~~~p~~~ 551 (720)
.-...| +.+--.+...++....|..+
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 544444 44555667777777777753
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0013 Score=68.08 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhc
Q 005000 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRA 498 (720)
Q Consensus 420 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 498 (720)
....+...|++++|+++|++.++.. .-+...|..+..++...|++++|+..++++.. +.| +...|..+..+|.+.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999853 22456777888899999999999999999863 344 567888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005000 499 GHLNEALEVIKNM-PMKPNSIVWGALLGAC 527 (720)
Q Consensus 499 g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~ 527 (720)
|++++|+..|++. .+.|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999987 5667655544444333
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.15 Score=51.56 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=91.8
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
+..+.-+...|+...|.++-.+..-||..-|-..+.+++..+++++-.++... .- .++.|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHH
Confidence 34455566788999999999988888999999999999999999877665432 22 3477888899999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~ 530 (720)
+|..+...+ + +..-+.+|.++|++.+|.+.--+.. |...+..+..-|..+
T Consensus 255 eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 255 EASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCC
Confidence 998887653 1 2456788999999999988765542 555555555444433
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00026 Score=53.49 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
...|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578888899999999988998888888899999999999999888877654
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.15 Score=51.48 Aligned_cols=110 Identities=11% Similarity=0.172 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 529 (720)
.+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..|+|++-.++... +-.++-|.-++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355566777888899888887764 4554 8999999999999999999998887654 3356889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
.|+..+|.....+ + .+.....+|.+.|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k---~------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---I------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---C------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888877 1 225578899999999999887443
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00037 Score=52.09 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999987 5556 567888899999999999999999999999999874
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.002 Score=56.69 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
...-+...|++++|..+|+-+ -..| +..-|..|...|...+++++|...|..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999887 3344 66678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005000 569 NFRELRQMILD 579 (720)
Q Consensus 569 ~a~~~~~~m~~ 579 (720)
.|+.-+....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.35 E-value=0.0027 Score=51.03 Aligned_cols=90 Identities=27% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 534 (720)
..+...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.++.. ...| +..+|..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344444445555444444311 1112233444455555555555555555543 2222 3345555566666666666
Q ss_pred HHHHHHHHHHhcCC
Q 005000 535 MAEMAAKQILELDP 548 (720)
Q Consensus 535 ~a~~~~~~~~~~~p 548 (720)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666666555
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0017 Score=62.74 Aligned_cols=102 Identities=20% Similarity=0.136 Sum_probs=87.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH---RDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
+-|.+.|-.|...|.+.|+...|..-|.+. .+.| ++..+..+..++... .+..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999987 4444 667777777664433 35678999999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 557 LCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
|+..+...|++.+|...++.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886543
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.011 Score=59.07 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA-CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888899999999988542 2334455555444 333567777999999998654 556778999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
.+.+.|+.+.|..+|++. ..-|. ...|...+..=.+.|+.+....+.+++.+.-|++. ....+.+=|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999997 22233 35999999999999999999999999999988853 333344433
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.33 E-value=0.00085 Score=53.20 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=39.9
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 427 NGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. +.+. .+....-.+...|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL--KLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH--THHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666654321 22333444555666666666666666541 1111 11222333455566666666666
Q ss_pred HHHHh
Q 005000 506 EVIKN 510 (720)
Q Consensus 506 ~~~~~ 510 (720)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.32 E-value=0.0006 Score=52.36 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=49.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
...+...++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.++...+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788899999999999999999999999999999999999999999888887543
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.012 Score=53.86 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 491 (720)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666677777888888888887766432222 236666777777777888877777776521 12223444455
Q ss_pred HHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 492 VDLLG-------RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 492 i~~~~-------~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
...|. +.|++++|... +++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55554 33333333222 345667777888888864
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.0017 Score=64.39 Aligned_cols=258 Identities=11% Similarity=0.013 Sum_probs=159.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHH--H--cCCC-CChhHhhHHhhhh
Q 005000 322 GYLRVNRFREALTLFREMQTSNIR---PDEFTIVSILTACANLGALELGEWVKTYID--K--NKVK-NDIFVGNALIDMY 393 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~--~~~~-~~~~~~~~li~~y 393 (720)
-+++.|+....+.+|+..++.|.. .=+.+|..+-++|.-++++++|.++|..=+ . .|-+ -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467888888888888888887732 123445566677777888888888775422 1 1100 0112222344444
Q ss_pred hhcCCHHHHHHHHHhcc-------CC--CHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH---
Q 005000 394 CKCGDVEKAQRVFREML-------RK--DKFTWTAMIVGLAINGH--------------------GDKSLDMFSQML--- 441 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~--- 441 (720)
--.|.+++|.....+-. .+ ....+..+...|...|+ .+.|.++|.+=+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777665433221 11 12234444555544332 234445554322
Q ss_pred -HCCCC-CChHHHHHHHHHHHhcCChhhHHHHHHHHH---HHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 005000 442 -RASII-PDEVTYVGVLSACTHTGMVDEGREYFADMT---IQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM---- 511 (720)
Q Consensus 442 -~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~---- 511 (720)
..|-. .-...|..|.+.|.-.|+++.|+..++.-. +++|-.. ....+..+...+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 12200 111356666666777889999998876422 2333222 2356778888999999999999998764
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 512 ---PMK-PNSIVWGALLGACRVHRDAEMAEMAAKQILELD------PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 512 ---~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+-+ ....+..+|.+.|....+++.|+..+.+=+.+- .....++..|+++|...|..+.|..+.+..++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 245677889999999999999999888766542 22456899999999999999999987766544
No 179
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.30 E-value=0.00014 Score=45.90 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.39 Score=52.20 Aligned_cols=353 Identities=11% Similarity=0.071 Sum_probs=198.4
Q ss_pred HHHhCCChhHHHHHHHHH--------HHCCCCCCHhhHHH-----HHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHH
Q 005000 190 GYKRVKQFDETRKLFGEM--------ERKGVLPTSVTIVL-----VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 256 (720)
++.+.-++++-..+-++. ..-|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 344445555544444433 23466666555543 4556666777888888776654332222 466666
Q ss_pred HHHHHHhcCC---HHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CccchHHHHHHH
Q 005000 257 LTDMYAACGE---MGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPER--------DYVLWTAMIDGY 323 (720)
Q Consensus 257 li~~y~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~ 323 (720)
...-+.+..+ -+.+..+-+++.. .+.++|..+..-...+|+.+-|..+++.-+.. +..-+..-+.-.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 6666666532 3344455555555 46677888888888889999888888754432 222233444445
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHH
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
.+.|+.+-...++..+...- +...|...+ .+...|..++.+..+..-. ..|-+.|-...+..++-
T Consensus 557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a 621 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALA 621 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH---HHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhh
Confidence 55556555555555444321 111111111 1122333344333331100 11222232222222211
Q ss_pred HHH-Hhc-----cCCCHHHHHHHHHHHHHcCCh---HH-------HHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCChh
Q 005000 404 RVF-REM-----LRKDKFTWTAMIVGLAINGHG---DK-------SLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 404 ~~~-~~~-----~~~~~~~~~~li~~~~~~g~~---~~-------A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
.+- +.. .+.-..........+++.... .+ -+.+.+.+.. .|..-...|.+--+.-+...|+..
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 111 110 011111222223334433321 11 2223333322 233334456666677888999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+|.++-.+.+ .||...|..-+.+++..+++++-+++-+++. .++-|.-+..+|.+.|+.++|...+-+.-.+
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 9999877654 5899999999999999999999999888763 2556777889999999999998887654322
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.-...+|.+.|++.+|.++-
T Consensus 774 --------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 774 --------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred --------HHHHHHHHHhccHHHHHHHH
Confidence 25788999999999998864
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.23 E-value=0.00061 Score=51.63 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHR-DAEMAEMAAKQILELDP 548 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 548 (720)
++..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888999999999988886 4556 5678888889999999 79999999999999988
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.20 E-value=0.01 Score=52.66 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHH
Q 005000 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP---NSIVWG 521 (720)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~ 521 (720)
.|....-..|..+....|+..+|...|++.. .--+..|....-.+..+....+++.+|...++++ ...| .+.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3444333444445555555555555554443 1112233444444444444455555555554443 1111 111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.+...+...|.++.|+..++.++.--|+ +..-...+..+.++|+.+++..-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 3334444455555555555555544443 23333334444455544444443
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.20 E-value=0.34 Score=49.57 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=76.3
Q ss_pred hcCC-HHHHHHHHHhccC---CCHHHHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCChH----HHHHHHHH-
Q 005000 395 KCGD-VEKAQRVFREMLR---KDKFTWTAMI----VGLAIN---GHGDKSLDMFSQMLRASIIPDEV----TYVGVLSA- 458 (720)
Q Consensus 395 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a- 458 (720)
+.|. -++|..+++.+.+ -|..+-|... ..|.+. ....+-+.+-+-..+.|+.|-.+ .-+.+..|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 4444 6778888777642 3544444332 223221 22233334444445677776543 23333333
Q ss_pred -HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005000 459 -CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523 (720)
Q Consensus 459 -~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l 523 (720)
+...|++.++.-+-.-+. .+.|++.+|..+.-.+....+++||.+++..+| |+..+|++-
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 456788888876554443 678999999999888888999999999999875 566666543
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.00041 Score=52.42 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 498 AGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.|++++|+++|+++ ...| +...+..+..+|...|++++|...++++...+|+++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 44444444444444 2222 34444444455555555555555555555555554333
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.23 Score=49.84 Aligned_cols=124 Identities=11% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHhhhhhhc-CCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----Ch-HH
Q 005000 388 ALIDMYCKC-GDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-----DE-VT 451 (720)
Q Consensus 388 ~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~t 451 (720)
.+...|.+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +. ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455555 666666666665521 11 2244555667788888888888888877643221 11 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHc-CCCcc--HHHHHHHHHHHHh--cCCHHHHHHHHHhC
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQH-GIEPN--EAHYGCMVDLLGR--AGHLNEALEVIKNM 511 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~~~~li~~~~~--~g~~~eA~~~~~~~ 511 (720)
|...+-.+...|++..|.+.+++..... ++..+ ......|++++-. ...+++|..-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3333445566788888888887764111 12122 3344556666643 34567777777776
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.09 E-value=0.047 Score=48.60 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchH
Q 005000 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--NEAVY 554 (720)
Q Consensus 480 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 554 (720)
.+.|++..--.|...+.+.|+..||...|++. .+.-|......+..+....+++..|...++++.+..|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34455555555555555555555555555554 23335555555555555555555555555555555543 34445
Q ss_pred HHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 555 VLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 555 ~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..++..|...|++++|+..++....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555555555555555555554443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.04 E-value=0.019 Score=62.24 Aligned_cols=135 Identities=12% Similarity=0.068 Sum_probs=97.6
Q ss_pred CCCCCChHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhc--------CCHHHHHHHH
Q 005000 443 ASIIPDEVTYVGVLSACTHT-----GMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRA--------GHLNEALEVI 508 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~eA~~~~ 508 (720)
.+.+.|...|...+.+.... +..++|..+|+++. ...|+- ..|..+..+|... ++++.+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34566778888888875543 23678999999887 456763 3444443333221 2344555555
Q ss_pred HhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 509 KNM---P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 509 ~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
++. + ...++..|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 553 1 233567788887777788999999999999999999 57899999999999999999999998886644
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.075 Score=53.30 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=61.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHH
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT-GMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLL 495 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 495 (720)
+..|...|++..|-+.+.++ ...|... |++++|.+.|++..+-+.-... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555555555554444433 3344444 5666666666655432211111 23455566778
Q ss_pred HhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 496 GRAGHLNEALEVIKNMP---MK-----PNSI-VWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+.|++++|.++|++.. .+ .+.. .+...+-.+...||...|...+++..+.+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888887751 11 1111 1222333455678888888888888888775
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.082 Score=53.90 Aligned_cols=162 Identities=20% Similarity=0.155 Sum_probs=106.7
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCC---C----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRK---D----KFTWTAMIVGLAI---NGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
.|+-.|-...+++.-.++.+.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677888888888888888543 1 1112223344555 7888999999988766666777778777666
Q ss_pred HHHh---------cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH----HHHHH---Hh-C------CCC
Q 005000 458 ACTH---------TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE----ALEVI---KN-M------PMK 514 (720)
Q Consensus 458 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e----A~~~~---~~-~------~~~ 514 (720)
.|-. ....++|+..|.+. +.+.|+..+--.++.++.-+|...+ ..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 22467788888754 4566766555455555555554222 22222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
.|-..+.+++.++.-.|+++.|.+++++++++.|+...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 35566689999999999999999999999999987653
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.93 E-value=0.0083 Score=62.35 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYK------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 225 (720)
....+++......+++++..++-+... --..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.++..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 334444444444555555555433221 11234568888888888888888888888888888888888888888
Q ss_pred HhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 005000 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264 (720)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 264 (720)
+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888887777666666655555555444
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.91 E-value=0.0036 Score=64.36 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV---YVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+...|+.+..+|...|++++|+..++++++++|++..+ |+.++.+|..+|+.++|.+.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555566666666666666655555432 55555556556666665555555554
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.012 Score=49.79 Aligned_cols=86 Identities=19% Similarity=0.049 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhh
Q 005000 492 VDLLGRAGHLNEALEVIKNM---PMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAA 563 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 563 (720)
..++-..|+.++|..+|++. +.... ...+-.+.+.++..|++++|..++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44555667777777776665 22211 234556667788888888888888888877776 55666667777788
Q ss_pred cCChhHHHHHHHHH
Q 005000 564 CNRWDNFRELRQMI 577 (720)
Q Consensus 564 ~g~~~~a~~~~~~m 577 (720)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888765443
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.0033 Score=48.20 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678899999999999887 5556 56778888888999999999999999999999987665443
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.0079 Score=55.29 Aligned_cols=118 Identities=22% Similarity=0.290 Sum_probs=84.4
Q ss_pred CCCcccHHHHHHHHh-----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHH
Q 005000 112 RPDNYTFPFLLKGFT-----RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186 (720)
Q Consensus 112 ~p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 186 (720)
..|..+|..++..+. +.|.++.....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 356777877777775 457888889999999999999999999999998765 3332 112222111
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc-hHHHHHHHHHHH
Q 005000 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL-DVGKRAHRYVKE 244 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~ 244 (720)
- -.-.+-+-|++++++|...|+.||..|+..++..+++.+.. ....++.=+|.+
T Consensus 113 --~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 113 --M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred --c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 0 01234567999999999999999999999999999877653 344444444444
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.82 E-value=0.012 Score=47.93 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=65.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHHHH
Q 005000 85 TMIKGYSRIDSHKNGVLIYLDMLKSDV-RPDNYTFPFLLKGFTRDI--------AVEFGKELHCHVLKFGFDSSVFVQNA 155 (720)
Q Consensus 85 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 155 (720)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. .+-..+.+++.++..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445566667999999999999999999 899999999999987653 34567788999999999999999999
Q ss_pred HHHHHHh
Q 005000 156 LISTYCL 162 (720)
Q Consensus 156 li~~y~~ 162 (720)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9877654
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.27 Score=52.20 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
+-.+++...|+.++|..+. ..+|-.+-++++-+++-.. +..+...+..-+-+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccch
Confidence 4456666778887776653 2334444444444443322 33444444445556666777
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHHHH----------HHHHhcCCHHH
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIV-WGALL----------GACRVHRDAEM 535 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~-~~~ll----------~~~~~~g~~~~ 535 (720)
|-++|..|-. ...++++....++|+||..+-++.| +.||+.. |...+ .++.+.|+..+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 7888877631 2356777788888888888888874 4454321 11111 34556666677
Q ss_pred HHHHHHHHHh
Q 005000 536 AEMAAKQILE 545 (720)
Q Consensus 536 a~~~~~~~~~ 545 (720)
|.++++++..
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 7777766654
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.80 E-value=0.0098 Score=58.30 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLC 558 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 558 (720)
.|..-+..+.+.|++++|...|+.. ...|+ +..+.-+..++...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666655 22232 2344455566666777777777777777666553 34455556
Q ss_pred hHhhhcCChhHHHHHHHHHHh
Q 005000 559 NIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 559 ~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+|...|++++|.++++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777666654
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.78 E-value=0.0024 Score=43.21 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988887764
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.1 Score=50.82 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=105.6
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCC---CHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRK---DKFT---WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
.....+.+.|++++|.+.|+.+... +... .-.++.+|.+.+++++|...|++.++....-...-+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3455556678888888888888543 1222 233456778888888888888888875322222344333433331
Q ss_pred --cC---------------C---hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 005000 462 --TG---------------M---VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521 (720)
Q Consensus 462 --~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~ 521 (720)
.+ + ..+|...|+.++ +.|=...-..+|...+..+..+--. --.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~-~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAK-YEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHH-HHH
Confidence 11 1 122333344333 3333333344554444433100000 011
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.+..-|.+.|.+..|..-++.+++.-|+. ..+...+..+|...|..++|.++.+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34456889999999999999999987764 4677788999999999999999877654
No 200
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.74 E-value=0.07 Score=46.93 Aligned_cols=93 Identities=9% Similarity=0.002 Sum_probs=65.6
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (720)
-++...+...|++++|.++|+-+.. | +..-|-.|...+-..|++++|+..|.......+ -|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 3455556677888888888887642 2 556777777788888888888888888777542 24456666777778888
Q ss_pred ChhhHHHHHHHHHHHcC
Q 005000 464 MVDEGREYFADMTIQHG 480 (720)
Q Consensus 464 ~~~~a~~~~~~m~~~~~ 480 (720)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888877764433
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.72 E-value=0.039 Score=44.96 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHHcCCCccHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASI-IPDEVTYVGVLSACTHTG--------MVDEGREYFADMTIQHGIEPNEAH 487 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 487 (720)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+|+.|. ..+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHH
Confidence 34456666667999999999999999999 899999999998876543 2445677888886 6678888888
Q ss_pred HHHHHHHHHh
Q 005000 488 YGCMVDLLGR 497 (720)
Q Consensus 488 ~~~li~~~~~ 497 (720)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.71 E-value=0.02 Score=59.64 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=99.2
Q ss_pred HHHHhHh---CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 005000 102 IYLDMLK---SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF--GFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 102 l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 176 (720)
++..|.+ .+.+.++..+..++..+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.-
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444432 334456777888888888888888888877776654 22233456679999999999999999998643
Q ss_pred ----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 177 ----YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 177 ----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.-||..++|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 34899999999999999999999999999998888888888888888887765
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.70 E-value=0.92 Score=46.59 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNMPMKP----NSIVWGALLGA--CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
-+.++++.++.| +...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-......++++|...+..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344566666655 34456667666 6789999999988888899999 7899999999999999999999998765
Q ss_pred H
Q 005000 578 L 578 (720)
Q Consensus 578 ~ 578 (720)
.
T Consensus 522 P 522 (549)
T PF07079_consen 522 P 522 (549)
T ss_pred C
Confidence 3
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.67 E-value=0.017 Score=53.18 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=73.9
Q ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc------------
Q 005000 402 AQRVFREM--LRKDKFTWTAMIVGLAIN-----GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT------------ 462 (720)
Q Consensus 402 A~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 462 (720)
-...|+.. ..++..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 456777777777777653 56666677788888888888888888888776542
Q ss_pred ----CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 463 ----GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 463 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
.+-+-|++++++|. .+|+-||.+++..+++.+++.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 22466889999994 889999999999999998877753
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.64 Score=47.08 Aligned_cols=147 Identities=15% Similarity=0.061 Sum_probs=76.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh--hhhhcCCHHHHHHHHHhccCCCHH---------------HHHHHH
Q 005000 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALID--MYCKCGDVEKAQRVFREMLRKDKF---------------TWTAMI 421 (720)
Q Consensus 359 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 421 (720)
...++.+.|.++-..+.+..- .+ .+..+++ ++--.++.+.|..-|++...-|+. .|.-=.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 345555666555555554331 11 1111111 122345566666666665433221 122223
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHh
Q 005000 422 VGLAINGHGDKSLDMFSQMLRA---SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGR 497 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 497 (720)
.-..++|++..|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+... .+.|. ...|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3455677777888877777652 234445556666666777777777777766553 23322 1122222234445
Q ss_pred cCCHHHHHHHHHhC
Q 005000 498 AGHLNEALEVIKNM 511 (720)
Q Consensus 498 ~g~~~eA~~~~~~~ 511 (720)
.+.|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777665
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.67 E-value=0.31 Score=47.38 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=29.3
Q ss_pred HhcCCHHHHHHHHhhCCCCCcc------chHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005000 293 INRGQVDMARQYFDQMPERDYV------LWTAMIDGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
.+.|++++|.+.|+.+....+. ..-.++.+|.+.+++++|...|++..+..
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3345555555555544332111 12345567778888888888888877653
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.016 Score=58.38 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCE
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 596 (720)
..+++.|...|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 4466777888899999999999999999999999999999999999999999999999998762
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005000 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625 (720)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (720)
.|.+..|-..|..+.++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIR 339 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHH
Confidence 4566677666666665554
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=1.3 Score=47.73 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----eeeHHHHHHHHHhCCChhHHHH
Q 005000 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD-----VVTWNAMFSGYKRVKQFDETRK 202 (720)
Q Consensus 128 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~ 202 (720)
.|.+++|.+++-.+-++. .-|.++.+.|++-...++++.....+ ..+|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777665554432 34566667777777777766543321 2356666666666666777766
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 005000 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282 (720)
Q Consensus 203 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 282 (720)
.|..-... ...+.++.+..++++-..+.. .++.+....-.+.+|+.+.|.-++|.+.|-+-..|.
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk- 882 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK- 882 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-
Confidence 66543211 122333333333333322222 234455666667777777777777777766554432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccch--------------HHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW--------------TAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
+.+..+...+++.+|.++-+...-|.+.+. -.-|..+.+.|++-+|-+++.+|.+
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 233445555666666666555443322221 1123445566666666666666643
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.55 E-value=0.027 Score=56.24 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNM--PMKPNSIVWGALLGA 526 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~ 526 (720)
.+|..++...-+.+..+.|+.+|.+..+ .-..+..+|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888888899999999999962 222345666666666555 56666699999987 344578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...|+.+.+..++++++..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998866643 47777888888899999999999888763
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.13 Score=48.48 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=97.2
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-----hhHhhHH
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND-----IFVGNAL 389 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~l 389 (720)
..+.++..+.-.|.+.-.+.++++.++...+.+......+.+.-.+.|+.+.+...++.+.+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566777777788888888888888876666777777788888888999988888887766433333 3333344
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 453 (720)
...|.-.+++..|...|.+++.. |++.-|.-.-+..-.|+..+|++..+.|... .|...+-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45566678888888888887644 5566666555666678888899988888875 45444333
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.49 E-value=0.091 Score=44.43 Aligned_cols=107 Identities=13% Similarity=0.054 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--CChhHhhHHhhhh
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPD--EFTIVSILTACANLGALELGEWVKTYIDKNKVK--NDIFVGNALIDMY 393 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y 393 (720)
.+..++-..|+.++|+.+|++....|.... ...+..+-+.+...|++++|..+++........ .+..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445667788889999999998888876554 234445556666777777777777766654211 0112222233344
Q ss_pred hhcCCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 005000 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 424 (720)
...|+.++|.+.+-...-++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665554433333343333333
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.46 E-value=0.22 Score=52.88 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=67.6
Q ss_pred cccHHHHHHHHhccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 005000 115 NYTFPFLLKGFTRDIAVEFGKEL--HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192 (720)
Q Consensus 115 ~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 192 (720)
+-.|+..=++|.+.++...-+-+ ++.+.++|-.|+... +...++-.|++.+|.++|.
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------ 656 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------ 656 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------
Confidence 33455556667666665443333 345566676666554 3345666789999988885
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005000 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272 (720)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 272 (720)
+.|.-..|+++|.+|+--. ...-+...|+.++-+.+.+.-.+... ++.--.+...++...|+.++|..
T Consensus 657 ~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 657 RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhh
Confidence 4567777888777765321 11223344444444443332222110 11111234455666677666665
Q ss_pred HH
Q 005000 273 IF 274 (720)
Q Consensus 273 ~~ 274 (720)
+.
T Consensus 725 i~ 726 (1081)
T KOG1538|consen 725 IC 726 (1081)
T ss_pred hh
Confidence 43
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.45 E-value=0.098 Score=52.45 Aligned_cols=131 Identities=8% Similarity=-0.056 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHH---HcC-CCccHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQM----LRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTI---QHG-IEPNEA 486 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~-~~p~~~ 486 (720)
.|..+...|.-.|+++.|+..-+.- .+.|-+. ....+..+.+++.-.|+++.|.+.|+.... +.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444444556666665544332 1222111 113555566666666777777766654320 111 112234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-------P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
...+|...|.-...+++|+.++.+- + .--...++-+|..++...|..++|...+++.+++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4445666666666677777666543 1 1123456667777887788888887777776653
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.056 Score=53.04 Aligned_cols=101 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALL 524 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll 524 (720)
.|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ +..| ....|..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344433333455677777777776664432111 0234455777777777777777777776 2222 244555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999999864
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=2 Score=46.98 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=75.8
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+.. .+-|.-...+|.+.|+.++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHH
Confidence 3344455678888888888888888888888888888888888776665554331 3455567788888888888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
|.+++-+.. |.. -.+.+|.+.|++.+|.++--+
T Consensus 763 A~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 763 AKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 888876442 211 467788888888888776543
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.43 Score=45.18 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH-----H
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-----C 490 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ 490 (720)
.-+.++..+.-+|.+.-.+.++.+.++...+-+......+.+.-.+.|+.+.|..+|++..+..+ ..+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 44566677777888888888899988866555667777788888888999999999987653322 22222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+...|.-++++.+|...+++.+ .+| |++..|+-.-...-.|+...|.+..+.+++..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3334555666777777776663 223 3444444333344456677777777777777765
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.15 E-value=2.4 Score=45.40 Aligned_cols=410 Identities=12% Similarity=0.105 Sum_probs=226.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005000 78 PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF-PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156 (720)
Q Consensus 78 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 156 (720)
-+...|+++|..--+..+.+.+...+..++.. .|..+-| .....-=.+.|..+.+.++|+..+. |++..+..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556888887666666666677778887753 3544432 2222223567888999999998887 677777788777
Q ss_pred HHHHHh-cCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh--
Q 005000 157 ISTYCL-CGEVDMARGIFDVSYK------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA-- 227 (720)
Q Consensus 157 i~~y~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-- 227 (720)
+..... .|+.+.-++.|+.... .....|-..|.--...+++.....++++.++... .-|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHH
Confidence 765543 4677777777775432 3455788888888888899999999998876421 11222221111
Q ss_pred -cC------CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 228 -KL------KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 228 -~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
+. ...+++.++-....+.. .-...+.. .+.
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~------------------------------~e~ 232 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEP------------------------------LEE 232 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccCh------------------------------hHH
Confidence 10 01111111111111000 00000000 000
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc---
Q 005000 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN--- 377 (720)
Q Consensus 301 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--- 377 (720)
-....+....+. +..+++.....+....+ ..+| -........+..++.-++.
T Consensus 233 ~~~~v~~~~~~s--------------~~l~~~~~~l~~~~~~~----~~~~-------~~s~~~~~kr~~fE~~IkrpYf 287 (577)
T KOG1258|consen 233 LEIGVKDSTDPS--------------KSLTEEKTILKRIVSIH----EKVY-------QKSEEEEEKRWGFEEGIKRPYF 287 (577)
T ss_pred HHHHHhhccCcc--------------chhhHHHHHHHHHHHHH----HHHH-------HhhHhHHHHHHhhhhhcccccc
Confidence 000000000000 00111111100000000 0000 0000011111111111111
Q ss_pred ----CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 005000 378 ----KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450 (720)
Q Consensus 378 ----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 450 (720)
-..++...|...++.-.+.|+.+.+.-.|+...-| -...|--.+.-....|+.+-|..++....+--++-...
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence 11234567888888888899999999999888654 33456666655556688888888777766543332222
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEAL---EVIKNM-PMKPNSIVWGALL- 524 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~p~~~~~~~ll- 524 (720)
+-..-..-+-..|+++.|..+++.+..++ |+. ..-.--+.+..|.|..+.+. +++... +.+-+..+...+.
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYV 444 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence 22222233567899999999999997443 543 33334556778899998888 555554 2222322222222
Q ss_pred ---H-HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 525 ---G-ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 525 ---~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
. -+...++.+.|..++.++.+..|++-..|..+.++....+
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2 2456789999999999999999999999999988876665
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.15 E-value=0.0083 Score=46.65 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILEL----DPD---NEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666666643 111 23456677777777777777777776654
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.15 E-value=0.035 Score=46.27 Aligned_cols=90 Identities=24% Similarity=0.223 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHhHhhhcCC
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN----EAVYVLLCNIYAACNR 566 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 566 (720)
-++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++++++.-+. -..|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3677889999999999886 3334 67889999999999999999999999999985332 2468888999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005000 567 WDNFRELRQMILDRGI 582 (720)
Q Consensus 567 ~~~a~~~~~~m~~~~~ 582 (720)
-+.|+.-|+..-+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.09 E-value=1.4 Score=42.04 Aligned_cols=194 Identities=20% Similarity=0.168 Sum_probs=133.9
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR-----KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
..........+...+.+..+...+..... .....+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45556667777777777777777776542 2445566666677777778888888888776543331 22222222
Q ss_pred -HHHhcCChhhHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 005000 458 -ACTHTGMVDEGREYFADMTIQHGIEP----NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN--SIVWGALLGACRV 529 (720)
Q Consensus 458 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~ 529 (720)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888887742 233 3344444445567788888888888876 33333 5677788888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++++.+...+.++.+..|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999888876666777777777777788888877776553
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.07 E-value=0.011 Score=46.02 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-----PMK---PN-SIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-----~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+|+.+...|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445555555555555555555443 011 22 445666667777777777777777776653
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.11 Score=52.51 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=99.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 500 (720)
.+.|.+.|++..|...|++.+.. |. +...-+.++.... .. .-...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKA-EA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHH-HH--------HHHHHhhHHHHHHHhhhh
Confidence 45677788888888887776542 10 0111111222111 11 123456778888999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH-HHHHHHH
Q 005000 501 LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF-RELRQMI 577 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 577 (720)
+.+|++.-++. ..+| |.-..---..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+...+++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998886 4554 6777778889999999999999999999999999999988998888887776655 6788888
Q ss_pred HhC
Q 005000 578 LDR 580 (720)
Q Consensus 578 ~~~ 580 (720)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.96 E-value=2.1 Score=43.14 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=130.5
Q ss_pred hcCCHHHHHHHHhhcCCC-Cch--hHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHH
Q 005000 263 ACGEMGFALEIFGNIKNK-DVI--SWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLF 336 (720)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 336 (720)
-.|+.+.|.+-|+.|... ... -..-|.-.--+.|..+.|...-+...+. -...|.+.+...+..|+++.|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 346666666666666542 111 1111222223556666666666555433 2346788899999999999999999
Q ss_pred HHHHHCC-CCCCHHH--HHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCCChhH-hhHHhhhhhhcCCHHHHHHHHHhc
Q 005000 337 REMQTSN-IRPDEFT--IVSILTACAN---LGALELGEWVKTYIDKNKVKNDIFV-GNALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 337 ~~m~~~g-~~p~~~t--~~~ll~~~~~---~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
+.-.... +.++..- -..++.+-+. ..+...++..-.+..+ +.||..- .-.-...+.+.|++.++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 8766543 4454432 2223333211 1234455544444444 3344221 122345677778888887777777
Q ss_pred cC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH
Q 005000 410 LR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLR-ASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485 (720)
Q Consensus 410 ~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 485 (720)
-+ |.+..|. .|....-.+.++.-+++... ..++||. .....+..+-...|++..|..--+... ...|..
T Consensus 290 WK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pre 362 (531)
T COG3898 290 WKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRE 362 (531)
T ss_pred HhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchh
Confidence 33 3333222 23332333334444444332 2245554 455556666667777777666555443 456777
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 005000 486 AHYGCMVDLLGRA-GHLNEALEVIKNM 511 (720)
Q Consensus 486 ~~~~~li~~~~~~-g~~~eA~~~~~~~ 511 (720)
..|..|.+.-.-. |+-.++...+-+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 7777777665433 7777777766665
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.82 E-value=0.66 Score=43.84 Aligned_cols=167 Identities=10% Similarity=0.060 Sum_probs=86.0
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (720)
....+...|++++|.+.|+.+... -..+.-.++.++.+.|++++|...|+++++.-..-...-+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455667777777777776421 12344455666677777777777777766632111112222222222110
Q ss_pred -------------CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005000 463 -------------GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529 (720)
Q Consensus 463 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 529 (720)
+...+|...| ..++.-|=......+|...+..+...- ...-..+...|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 0111222222 233333333444444444443331000 0001224466889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHH
Q 005000 530 HRDAEMAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 572 (720)
.|.+..|..-++.+++.-|+.+ .+...++..|.+.|..+.+..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999988853 456778888999998885443
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=3.8 Score=44.51 Aligned_cols=324 Identities=13% Similarity=0.164 Sum_probs=150.5
Q ss_pred cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHhcCCCchHHHHH
Q 005000 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT----SVTIVLVLSACAKLKDLDVGKRA 238 (720)
Q Consensus 163 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 238 (720)
-|++++|++++-.+.++|.. |..+.+.|+|-...++++. -|-..| ...+..+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888777776653 5666677777776666543 111111 23455555555555556666555
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHH
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 318 (720)
+..-.. ....+.+|.+..++++-..+-..+++ |....-.|..++.+.|.-++|.+.|-+-..|. +
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----a 883 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----A 883 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----H
Confidence 543211 11234455554455544444444433 22334445556666666666665554433331 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 398 (720)
.+..|...+++.+|.++-+... -|...|+ +. ..+.++ +.+.. ..--|.++.+.|+
T Consensus 884 Av~tCv~LnQW~~avelaq~~~----l~qv~tl---ia--------k~aaql---l~~~~-------~~eaIe~~Rka~~ 938 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IA--------KQAAQL---LADAN-------HMEAIEKDRKAGR 938 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HH--------HHHHHH---Hhhcc-------hHHHHHHhhhccc
Confidence 3344555556666655544332 1222221 10 011111 11111 1123566777887
Q ss_pred HHHHHHHHHhccCCCHH---HHHHHHH----HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 005000 399 VEKAQRVFREMLRKDKF---TWTAMIV----GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 399 ~~~A~~~~~~~~~~~~~---~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
.-+|.+++.+|.++... .+..+=. +..-..+..++++-.++....|...|... +...|...++-++
T Consensus 939 ~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri 1011 (1189)
T KOG2041|consen 939 HLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRI 1011 (1189)
T ss_pred chhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHH
Confidence 77777777777433111 1111111 11111233344444444444443333221 2233334444444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
.+..- . -....|+-.|.+--...|..+.|++.--.+ .+-|-...|.-|.-+.+..+.+...-+++-++..
T Consensus 1012 ~~n~W--r--gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1012 LENTW--R--GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHhhh--h--hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 43221 1 123445555556666788888888764443 1223344444443333333334444444444433
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.76 E-value=0.2 Score=42.07 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----D----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF----D----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------chhhcchHHHH
Confidence 3566666666666655431 23333333333233333333334443332111 1 12345555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 506 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
..+-.+. .+..-..-.+.+....|+-++-.+++..+.+.+..+|....-++++|.+.|+..++.++++++-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5554443 234445566788889999999999999998766667899999999999999999999999999999874
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.67 E-value=0.26 Score=42.56 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=49.7
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHhHhhhcC
Q 005000 494 LLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA---VYVLLCNIYAACN 565 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g 565 (720)
...+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++. ++...+-++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 445677888888887776 3333 3445567888889999999999999999999887653 3444444444443
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.59 E-value=0.08 Score=54.73 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNS----IVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777777778888888877774 566653 35777888888888888888888888776
No 229
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.43 E-value=2.3 Score=49.12 Aligned_cols=158 Identities=21% Similarity=0.274 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005000 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 374 (720)
.+++++|+.-+..+. ...|.-.++.--++|.+++|+.++ +|+...+..+..+|+. .+
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HH
Confidence 455666666555554 334555555556677777777664 6777777777666553 12
Q ss_pred HHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH--HH
Q 005000 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV--TY 452 (720)
Q Consensus 375 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~ 452 (720)
.+.. .|+--.-+|.++|+.++|.+.|. ..|++.+|+.+-.+|... -|.. +-
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 2211 23344567999999999987654 468899999888876532 1222 22
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
..|.+-+...++.-+|-++..+.. -.|. -.+..|+++-.+++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~----sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL----SDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh----cCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 456777888888888888876543 2232 3466788888888888887665
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.40 E-value=0.063 Score=47.75 Aligned_cols=61 Identities=26% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777788899999999999999999999999999999999999999999999888754
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=95.39 E-value=0.24 Score=51.47 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=48.4
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.+|.++.++. .+.| |+.....+..+....++++.|...++++..++|+.+.++...+.+..-.|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444443 3344 555555555555666667777777777777777777777777777777777777777666543
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.39 E-value=3.9 Score=42.12 Aligned_cols=131 Identities=13% Similarity=0.052 Sum_probs=85.4
Q ss_pred CCChhHhhHHhcccccccCChHHHHHHhccCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHH
Q 005000 45 LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV---CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121 (720)
Q Consensus 45 ~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~---~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 121 (720)
+.|...|-.||+- |...|..+..++++++|..|-. .+|..-|++-....+++....+|.+.+..... ...|..-
T Consensus 39 PtnI~S~fqLiq~-~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQY-LETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHH-HhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHH
Confidence 4567889999999 9999999999999999987654 46999999888889999999999998876544 3344444
Q ss_pred HHHHhccCC------hHHHHHHHHHHHHh-CCCCC-hhHHHHHHHHHH---------hcCChHHHHHHHhcCCC
Q 005000 122 LKGFTRDIA------VEFGKELHCHVLKF-GFDSS-VFVQNALISTYC---------LCGEVDMARGIFDVSYK 178 (720)
Q Consensus 122 l~~~~~~~~------~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~ 178 (720)
|.-..+... -...-+.++.++.. +++|- ...|+..+...- .+.++|..++.+.++..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 443333221 11223445555442 34433 334555444332 12456677777776543
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.32 E-value=0.24 Score=42.31 Aligned_cols=49 Identities=6% Similarity=0.120 Sum_probs=29.5
Q ss_pred CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
..|+..+..+++.+++..|++..|.++.+...+.++++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555555543
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.27 E-value=3.3 Score=47.95 Aligned_cols=26 Identities=4% Similarity=0.061 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCC--CchHHHHHHHHhHh
Q 005000 83 WNTMIKGYSRID--SHKNGVLIYLDMLK 108 (720)
Q Consensus 83 ~n~li~~~~~~g--~~~~A~~l~~~m~~ 108 (720)
.-.+|..|++.+ ..++|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 346777777776 55666666666553
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.15 E-value=0.68 Score=43.75 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHH
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 504 (720)
+..-|.+.|.+..|..-++.+.+.+.-.+. ......|+..|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566667777777777666655432221 23445566677777766644
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.88 Score=44.42 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCC-HHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG---HLNEALEVIKNM-PMKPN-SIVWGA 522 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p~-~~~~~~ 522 (720)
|...|..|..+|...|+.+.|..-|....+-. .++++.+..+..++..+. ...++.++|+++ ..+|+ ..+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34566666666666677776666666654222 234445555555443322 345677777776 55664 444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
|...+...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 55668888999999999999988877653
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.03 E-value=0.62 Score=46.26 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC--CC----CcchHHHHHhHhhhcCChhHHHHHHH
Q 005000 525 GACRVHRDAEMAEMAAKQILELD--PD----NEAVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
-+++..|....|.+..+++.++. .. .......++++|...|+.|.|..-++
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 44555555555555555554431 11 12223345555555555555544433
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.00 E-value=0.24 Score=42.30 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=34.9
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 005000 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVWGALLGACR 528 (720)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~ 528 (720)
....|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.=+.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345577777778888888888888888777665 45445777777775443
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=3.4 Score=39.19 Aligned_cols=218 Identities=19% Similarity=0.106 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhHhhHHhhhhhhcCCHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRV 405 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~ 405 (720)
....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433211 12344455555555566666665555554432 2234445555666666777777788888
Q ss_pred HHhccCC--C-HHHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 406 FREMLRK--D-KFTWTAMIV-GLAINGHGDKSLDMFSQMLRASIIP----DEVTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 406 ~~~~~~~--~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
+...... + ...+..... .+...|+.+.|...|.+... ..| ....+......+...++.+.+...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7776542 2 122333333 68888999999999999855 333 233444444456778899999999988762
Q ss_pred HcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 478 QHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 478 ~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+.++..|.
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 --LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2223 3677888888999999999999999887 44454 455666666666777899999999999999887
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.85 E-value=0.052 Score=34.03 Aligned_cols=33 Identities=36% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999998863
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.19 Score=48.20 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhhcCC
Q 005000 497 RAGHLNEALEVIKNM-------PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAACNR 566 (720)
Q Consensus 497 ~~g~~~eA~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 566 (720)
+.|++.+|...|... ...|+..-| |..++...|+++.|...|..+.+-.|+ -|..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 133455555 556666666666666666666665444 34556666666777777
Q ss_pred hhHHHHHHHHHHhC
Q 005000 567 WDNFRELRQMILDR 580 (720)
Q Consensus 567 ~~~a~~~~~~m~~~ 580 (720)
-++|..+++.+.++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666543
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=94.69 E-value=2.2 Score=44.53 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHH-CCCCCChH-HHHHHHHHHHh---------cCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHh
Q 005000 430 GDKSLDMFSQMLR-ASIIPDEV-TYVGVLSACTH---------TGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGR 497 (720)
Q Consensus 430 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 497 (720)
.+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.+.-+... .+.| |+.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 3567788888772 23566653 33333322211 223445666666554 2333 66777777888888
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH--HHhHhhhcCChhHHHHH
Q 005000 498 AGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL--LCNIYAACNRWDNFREL 573 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~ 573 (720)
.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|....+-.. ..++|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 88999999999998 57775 5678888888889999999999999999999986544333 33345544 45667766
Q ss_pred HH
Q 005000 574 RQ 575 (720)
Q Consensus 574 ~~ 575 (720)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
No 243
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.55 E-value=0.2 Score=45.26 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=69.8
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 494 LLGRAGHLNEALEVIKNM-P-MKP-----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
-+.+.|.+++|..-|... . .+| -.+.|..-..+..+.+..+.|+....+++++.|.+..+....+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777776665 1 121 234555555678889999999999999999999998999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 005000 567 WDNFRELRQMILDRG 581 (720)
Q Consensus 567 ~~~a~~~~~~m~~~~ 581 (720)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.54 E-value=0.095 Score=32.71 Aligned_cols=33 Identities=33% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.33 E-value=0.51 Score=41.82 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH----HHcCCCccHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT----IQHGIEPNEAH 487 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 487 (720)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777666642 2344566667777777777777776666543 24566666554
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=1.1 Score=44.14 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHHhcCChhhH
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV----LSACTHTGMVDEG 468 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a 468 (720)
.|+.-+|...++++.+ .|..+|+--=.++..+|+...-...+++.... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 26666666666666677766666666666543 23443222211 1123456666666
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 469 REYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
++.-++.. .+.| |.-.-.+....+.-.|+..|+.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66655443 2222 2333334555566666667776666654
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.28 E-value=0.36 Score=46.12 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=78.7
Q ss_pred HHHHHHhcc--CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----------
Q 005000 402 AQRVFREML--RKDKFTWTAMIVGLAIN-----GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG----------- 463 (720)
Q Consensus 402 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 463 (720)
.+..|.... ++|..+|-+++..+..+ +..+=....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 67888888888877654 455666677888999999999999999998765432
Q ss_pred -----ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 005000 464 -----MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 464 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 502 (720)
+-+=++.++++|. .+|+.||.++-..++.++++.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2234789999994 8999999999999999999998643
No 248
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.04 E-value=4.2 Score=45.63 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=42.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC-------hHHHHHHHHHHHHhCCCCChh
Q 005000 79 SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-------VEFGKELHCHVLKFGFDSSVF 151 (720)
Q Consensus 79 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 151 (720)
+.-.| ++|=-+.|.|++++|.++..+... ........|...++.+....+ -+....-+.+.++...+.|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33456 456667899999999998866553 345566778888888876432 234455555555544333554
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.91 E-value=2.7 Score=36.82 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=58.6
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (720)
++..+.+.+.+......++.+... +....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 334444444444444444444222 2334444555554432 2233333332 12333344466667777777
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005000 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA-GHLNEALEVIKNMPMKPNSIVWGALLGACR 528 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 528 (720)
+++..++..+. . +...++.+... ++.+.|.+++.+- .++..|..++..|.
T Consensus 86 ~~~~~l~~k~~----~------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDG----N------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhc----C------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777665542 1 22233333333 6677777777663 25566766666554
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=1.6 Score=42.48 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=77.3
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA---LLGACRVHRDAE 534 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 534 (720)
.....|+..++..+|+...... .-+...--.|+..|...|+.++|..++..++.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456677777777777765221 22345555677888888888888888888864433333322 222222222222
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+. ..+++-+..+|+|...-..|+..|...|+.++|.+.+-.+.++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 21 2345556678999999999999999999999999876666554
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.81 E-value=9.4 Score=39.49 Aligned_cols=133 Identities=10% Similarity=0.100 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH-HHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH-YGCM 491 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l 491 (720)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.=... -||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456677777777777888888888888888 566666777776544 457888888888764422 234333 3455
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 492 VDLLGRAGHLNEALEVIKNM--PMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
++-+.+-++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888888888888855 12222 5678888888888888888888888888888774
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=8 Score=37.87 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=111.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC
Q 005000 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480 (720)
Q Consensus 401 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 480 (720)
...+.++....+....--.........|+..+|..+|......... +...-..+..++...|+++.|..++..+..+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~- 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA- 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-
Confidence 3444445554442222223344567788899999999888875322 33555667888889999999999998764211
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHH
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLL 557 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 557 (720)
-.........-+..+.++....+..++-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -+|...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122344667777777777677766665566 56666777788888999999888777777654 3466777778
Q ss_pred HhHhhhcCChhHH-HHHHHHH
Q 005000 558 CNIYAACNRWDNF-RELRQMI 577 (720)
Q Consensus 558 ~~~~~~~g~~~~a-~~~~~~m 577 (720)
..++.-.|.-+.+ .+.+++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 8888777754443 3344443
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.43 E-value=4.9 Score=35.13 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCh
Q 005000 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197 (720)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 197 (720)
...++..+...+........++.+++.+ ..+....|.++..|++.. .....+.++. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3455555555556666666666666655 245566677777776543 2333333331 12333334455555555555
Q ss_pred hHHHHHHHHH
Q 005000 198 DETRKLFGEM 207 (720)
Q Consensus 198 ~~A~~l~~~m 207 (720)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555443
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=93.27 E-value=2.3 Score=37.77 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=36.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
-+.|++++|..+|+-+...+. -|..-+.+|..+|-..+++++|...|..... .+ .-|+..+-.+...|...|+.++|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 345555555555555444221 1222334444444445555555555544321 11 11122222244445555555555
Q ss_pred HHHHHhC
Q 005000 505 LEVIKNM 511 (720)
Q Consensus 505 ~~~~~~~ 511 (720)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555444
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=17 Score=40.73 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=81.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHH----HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCC
Q 005000 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF----SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230 (720)
Q Consensus 155 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 230 (720)
.-+++..+...++.|..+-..-.. |...-..+. .-+.+.|++++|..-|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345555555555555555443221 111111112 2234556666666665554322 2221 2333444444
Q ss_pred CchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhC
Q 005000 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI--SWTAIVTGYINRGQVDMARQYFDQM 308 (720)
Q Consensus 231 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 308 (720)
....-...++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.... ... -....+..+.+.+-.++|..+-..-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 444455556666666654 334445667777777777666666655442 111 1233444444555555554443332
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHHH
Q 005000 309 PERDYVLWTAMIDGYLRVNRFREALTLFREM 339 (720)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (720)
.. +.. .+--.+-..+++++|++.+..|
T Consensus 490 ~~-he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 22 111 1222233456677777776655
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.10 E-value=0.99 Score=43.50 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 491 MVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
|...+...|++++|...|..+ |..| -+..+--|.......|+.++|...++++.+.-|+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 445555555555555554443 2222 223444444555555666666666666666666543
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.04 E-value=11 Score=38.97 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 447 PDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
.|...+.+++.++.-.|++++|.+..+.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344556667777777777777777777775
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.84 E-value=4.1 Score=43.38 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=65.5
Q ss_pred HHHhCCChhHHHHHHH-HHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 005000 190 GYKRVKQFDETRKLFG-EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 268 (720)
...-.|+++++.++.+ .-.-..++ ..-...+++.+-+.|..+.|.++-. |+ ..-.+...++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 3445666766665554 11111111 2335556666666666666665532 22 12344556677777
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005000 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 269 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
.|.++-++.. +...|..|.....+.|+++-|++.|.+..+ |..|.-.|.-.|+.+.-.++.+.....|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776665544 344566666666666666666666665432 4555555666666655555555554444
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.80 E-value=3.8 Score=43.03 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELDPD--NEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..|...+++.|+.++|++.++.+++..|. +-.+...|+..+...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 45666677777777777777777776654 345666777777777777777777776543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.75 E-value=3.1 Score=44.99 Aligned_cols=20 Identities=15% Similarity=-0.112 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 005000 492 VDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~ 511 (720)
.-.+.-.++|++|.+.|..+
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHchHHHHHHHHHHH
Confidence 33344455555555555554
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.69 E-value=3.8 Score=43.65 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=97.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
.-.++++.+.++.+.-.-.. .-+....+.++..+-+.|..+.|+.+-.. . ..-.....+.|+++.|.++-+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCC
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHH
Confidence 34577777655553111010 11244588899999999999999988553 1 334556678999999998877
Q ss_pred hCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHh
Q 005000 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386 (720)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 386 (720)
+.. +...|..|.....++|+++-|.+.|.+... +..++-.+...|+.+.-..+.......|- +
T Consensus 343 ~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~ 405 (443)
T PF04053_consen 343 ELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------I 405 (443)
T ss_dssp CCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------H
T ss_pred hcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------H
Confidence 665 556899999999999999999998876542 34455555666777766666666666552 3
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhc
Q 005000 387 NALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
|....++.-.|++++..+++.+.
T Consensus 406 n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Confidence 44445555567777776666544
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.68 E-value=9.9 Score=36.53 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=93.2
Q ss_pred hhhcCCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh--HHHHHHHHHHHhc-
Q 005000 393 YCKCGDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDE--VTYVGVLSACTHT- 462 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~- 462 (720)
-.+.|++++|.+.|+.+... ...+--.++.++-+.+++++|+..+++....- -.||. ..|...++-+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34568888888888888543 22334445567777888888888888877642 23333 2333333322221
Q ss_pred ---CChhhHHHHH---HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHH
Q 005000 463 ---GMVDEGREYF---ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW--GALLGACRVHRDAE 534 (720)
Q Consensus 463 ---g~~~~a~~~~---~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~ 534 (720)
.+...+.+.| +.++.++ ||. .-..+|..-+.... |.... .++..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 2222233333 2222221 221 11112222211110 11111 23456688888888
Q ss_pred HHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 535 MAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.|..-++++++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888888888766533 4556677788888988888887665543
No 263
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.55 E-value=0.76 Score=44.04 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHHhcCC--CCCeeeHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCC-----------
Q 005000 169 ARGIFDVSY--KDDVVTWNAMFSGYKRV-----KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK----------- 230 (720)
Q Consensus 169 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 230 (720)
.++.|.... ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355566555 56777787777776543 455666667788999999999999999998776533
Q ss_pred -----CchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 005000 231 -----DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266 (720)
Q Consensus 231 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 266 (720)
+-+-+..++++|...|+.||-.+-..|++++++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234588899999999999999999999999988776
No 264
>PRK09687 putative lyase; Provisional
Probab=92.43 E-value=13 Score=37.14 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=21.6
Q ss_pred CCccchHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005000 311 RDYVLWTAMIDGYLRVNRF----REALTLFREMQTSNIRPDEFTIVSILTACAN 360 (720)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 360 (720)
.|...-...+.++.+.|+. ++++..+..+... .|+...-...+.++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGH 117 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhc
Confidence 3444444444555555542 3455555554322 3444444444444443
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.26 E-value=6.5 Score=42.53 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=82.8
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHH-HHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCCHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCM-VDLLGRAGHLNEALEVIKNMP-MK-----PNSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~eA~~~~~~~~-~~-----p~~~~~~~ll~~~~~~g~~~ 534 (720)
....+.+.++++.+... -|+...|... ...+...|++++|.+.|++.- .+ -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45678899999988743 4666655433 456778899999999999752 11 12334455667788899999
Q ss_pred HHHHHHHHHHhcCCCCcchHH-HHHhHhhhcCCh-------hHHHHHHHHHHh
Q 005000 535 MAEMAAKQILELDPDNEAVYV-LLCNIYAACNRW-------DNFRELRQMILD 579 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 579 (720)
+|...+.++.+...-+...|. ..+-+|...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999997665545554 455566788988 888888877754
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=22 Score=39.55 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=87.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHH
Q 005000 125 FTRDIAVEFGKELHCHVLKFGFDS---SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (720)
+.+.+.+++|..+-.... |..+ ...++..+|+.|.-.|++++|..+.-.|...+..-|--.+.-+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334445555555443322 2333 34577888888888899999988888888778888887777777777665443
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcC------------C-------CCChHHHHHHHHHHH
Q 005000 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK------------I-------VPNLILENALTDMYA 262 (720)
Q Consensus 202 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------------~-------~~~~~~~~~li~~y~ 262 (720)
.++- ......+...|..+|-.+.. .+ ...+++.+.+.. . .-+..+...|+..|.
T Consensus 444 ~~lP---t~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 444 PYLP---TGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYL 516 (846)
T ss_pred ccCC---CCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHH
Confidence 3321 11112233445555555544 11 111111111110 0 112234455889999
Q ss_pred hcCCHHHHHHHHhhcCCCCch
Q 005000 263 ACGEMGFALEIFGNIKNKDVI 283 (720)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~ 283 (720)
..+++++|..++-...++++.
T Consensus 517 ~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HccChHHHHHHHHhccChHHH
Confidence 999999999999888876553
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.05 E-value=5.4 Score=34.63 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIP--DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 498 (720)
.....+.|++++|.+.|+.+...-..+ ....-..++.++...|++++|...+++.++-+.-.|+ ..|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 334445566666666666655531111 1123444555556666666666666655533333332 2232233332222
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 499 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
...+. .+..+ ...=+..+....|...++++++.-|++.
T Consensus 96 ~~~~~---~~~~~------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEG---SLQSF------------FRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhh---HHhhh------------cccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111 11111 0011112235577888888888888753
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=11 Score=35.65 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=23.3
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 441 (720)
.++--..+|..+|.++.|-..+++.- -...+-++++|+++|++..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHH
Confidence 34555566666666666555554431 1123445556666665543
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.95 E-value=12 Score=35.92 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASII--PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
.|-.-+..-.+.|++++|.+.|+.+.....- -...+...++-++.+.+++++|....++....++-.||.. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 3444445566788888888888888864211 1124666677778888888888888888877777667654 333333
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------------cchHH
Q 005000 494 LLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-----------------EAVYV 555 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~ 555 (720)
++. .|.... ...|. .-...|...++.++..-|++ ...-.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 333 111111 00011 11223344444444444443 12334
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+++.|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6788899999999999999888876
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.86 E-value=1.4 Score=37.14 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhcCC
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM-KP-NS---IVWGALLGACRVHRD 532 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p-~~---~~~~~ll~~~~~~g~ 532 (720)
.+..|+++.|++.|.+... -.+-+...||.-..+|.-+|+.++|++-+++. .+ .| .. ..|-.-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455555555555555431 11224455555556666566666665555544 11 11 11 122223344666677
Q ss_pred HHHHHHHHHHHHhcCC
Q 005000 533 AEMAEMAAKQILELDP 548 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p 548 (720)
.+.|..-|+.+-++..
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 7777666666665543
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.76 E-value=0.3 Score=47.87 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACRVHR 531 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 531 (720)
-.+-|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|+.-.+.. .+. .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999998654 5567 8888888899999999998887766554 111 11234555555666778
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
+.++|.+-++.+++++|++.. |-..|++.....++.-+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIAT 218 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHh
Confidence 999999999999999999643 444555555555554443
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.67 E-value=7.4 Score=39.02 Aligned_cols=129 Identities=17% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C----hHHHHHHHHHHHhcCChhhHHHHHHHHH---HHcCCCccHHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIP-D----EVTYVGVLSACTHTGMVDEGREYFADMT---IQHGIEPNEAHYG 489 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~ 489 (720)
.+|..++.-.+.++++++.|+...+-.-.. | -..+.+|.+.+....++++|.-+..... ..+++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 346667777778888888888766521111 1 2467778888888888888876665432 2334433333333
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 490 C-----MVDLLGRAGHLNEALEVIKNM-------PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 490 ~-----li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+ |.-+|...|++-+|.+.-++. +.+| -......+...|+..|+.|.|..-|+.+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3 334566777776666665554 3333 2344567778899999999999888887764
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.49 E-value=9.3 Score=35.53 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++.-.|+++-|.+-|...-....-.|-...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY--- 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY--- 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH---
Confidence 55777777777788888888888888777532222 22222233455667787777666554322222222223322
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHhHhhhcCC
Q 005000 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-------EAVYVLLCNIYAACNR 566 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 566 (720)
.-.+.-++.+|..-+.+--.+.|..-|+..+-.+.-..--+ +.+++++.+-..++ ..+|.-|+.-|...|.
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22334456666654443322345566665554433211111 22333333322222 3588899999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005000 567 WDNFRELRQMILDRGI 582 (720)
Q Consensus 567 ~~~a~~~~~~m~~~~~ 582 (720)
.++|..+++......+
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999998876543
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.40 E-value=22 Score=37.69 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-M-KPN--SIVWGALLGACRV 529 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~-~p~--~~~~~~ll~~~~~ 529 (720)
.+..++-+.|+.++|++.+.+|.+......+..+...|+..|...+.+.++..++.+-. + -|. ...|++.+--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 35555567788888888887776444332334455667778888888888888877763 1 133 3445555444443
Q ss_pred cCC---------------HHHHHHHHHHHHhcCCCCc
Q 005000 530 HRD---------------AEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 530 ~g~---------------~~~a~~~~~~~~~~~p~~~ 551 (720)
.++ -..|.++..++.+.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 333 1235688888888887643
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.26 E-value=0.35 Score=30.09 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888888774
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.16 E-value=0.35 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=19.8
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888744
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=14 Score=35.07 Aligned_cols=199 Identities=14% Similarity=0.081 Sum_probs=112.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC--HHHHHHHHHHHHHcC
Q 005000 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD--KFTWTAMIVGLAING 428 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 428 (720)
|.....++....+++++..-+..+.+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333445566677777777655554431 1222222221 233455555555554433 235666678899999
Q ss_pred ChHHHHHHHHHHHH--CCCCCChH--HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 429 HGDKSLDMFSQMLR--ASIIPDEV--TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 429 ~~~~A~~l~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
.++.|-..+++.-+ .++.|+.. .|.--+......++...| .+.|......|.|..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 98887777776443 23555542 222222222222222222 23455566678888888888
Q ss_pred HHHHHhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 505 LEVIKNMP-----M--KPNS-IVWGALLGACRVHRDAEMAEMAAKQILEL----DPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 505 ~~~~~~~~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
-..|.+-. . -|+. ..+-+.+-.+....|+..|+..++.--++ .|++..+...|...| ..|+.|++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 77776642 1 1222 23445555566677899999998886654 466777777777776 4577777766
Q ss_pred HH
Q 005000 573 LR 574 (720)
Q Consensus 573 ~~ 574 (720)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.11 E-value=0.45 Score=31.89 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
.+..+...|.+.|++++|++++++. ...| |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4455666666666666666666665 3344 44455443
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=2.2 Score=42.11 Aligned_cols=159 Identities=8% Similarity=-0.018 Sum_probs=118.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH----HHHHHHHhcCCH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG----CMVDLLGRAGHL 501 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 501 (720)
-+|+..+|-..++++++. .+-|...+.-.=.+|...|+.+.-...++++..+ ..|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999886 4556677777788999999999999998887632 245554443 344556789999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCChhHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
++|++.-++. .+.| |.-.-.++.......|+..++.+..++--..-.+ -...|...+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 5666677778888999999999887765432211 23466777888888999999999998
Q ss_pred HHHhCCCccCCc
Q 005000 576 MILDRGIKKTPG 587 (720)
Q Consensus 576 ~m~~~~~~~~~~ 587 (720)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876666665554
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.90 E-value=0.39 Score=30.54 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.89 E-value=9.2 Score=32.51 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
....+..+...|+-+.-.+++.++... -+|+......+.+||.+.|+..++.+++.++.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455566666666666666666542 35566666666667777777777777666665
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.83 E-value=57 Score=41.53 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..+|......++..|.++.|..+.-++.+..+ +..+.-.+......|+-..|..+++.-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56899999999999999999999888888775 4789999999999999999999998887654
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=32 Score=38.47 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-----CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCC
Q 005000 157 ISTYCLCGEVDMARGIFDVSYKD-----DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 231 (720)
|+-+.+.+.+++|..+-+..... -...|-..|..+.-.|++++|-.+.-.|... +..-|..-+..++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 44556678888998887654431 2236888899999999999999888888754 44455555555555554
Q ss_pred chHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 005000 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAA 263 (720)
Q Consensus 232 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 263 (720)
.... ...+.......+..+|..++..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 4322 2222222222456677777766665
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.71 E-value=12 Score=33.62 Aligned_cols=37 Identities=3% Similarity=0.022 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHH
Q 005000 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 201 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
+++++.+...+++|+...+..+++.+.+.|.+....+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455666667777777788888888877777654333
No 285
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.76 E-value=40 Score=38.06 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005000 89 GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168 (720)
Q Consensus 89 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 168 (720)
-+.+.|++++|...|-+-... +.| +.+++-+-....+..-...++.+.+.|+. +..--+.|++.|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 345678888888887765432 222 34556665566666666777778888864 33444678899999998888
Q ss_pred HHHHHhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHH
Q 005000 169 ARGIFDVSYKDDV-VTWNAMFSGYKRVKQFDETRKLFGE 206 (720)
Q Consensus 169 A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 206 (720)
-.+..+....... .-....+..+.+.+-.++|..+-..
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 8887776652211 1244556666666666666555443
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.35 E-value=36 Score=36.92 Aligned_cols=120 Identities=11% Similarity=-0.026 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-CHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP--MKP-NSIVWGALLGA 526 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p-~~~~~~~ll~~ 526 (720)
.+|..-+.--...|+.+...-+|++... ....-.+.|--.+.-....|+.+-|..++.... ..| .+.+-..-...
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4666666666677777777777766541 222234455555555556677777766665541 112 22222222233
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHH
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
+-..|++..|..+++++.+--|.....-..-+++..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 556678888888888877655765555555566667777777777
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.24 E-value=25 Score=35.03 Aligned_cols=19 Identities=11% Similarity=-0.135 Sum_probs=12.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005000 526 ACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~ 544 (720)
.+.+.++++.|...++-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556677777777776543
No 288
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.14 E-value=5.9 Score=31.69 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005000 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 352 (720)
..+...|++++|..+.+.+.-||...|-++... +.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345566777777777777777777777766543 5677777777777777776 55544443
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.40 E-value=16 Score=32.55 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~ 534 (720)
+.-...++.+.+..++..+. -+.|.. +.-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456678888888888775 345543 222234455778899999999998883 3345555567777776655545
Q ss_pred HHHHHHHHHHhcCCC
Q 005000 535 MAEMAAKQILELDPD 549 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~ 549 (720)
.=....+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 556666777776664
No 290
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.38 E-value=2.5 Score=29.65 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=39.9
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCc
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 629 (720)
....++-.+.+.|++++|.+..+.+.+ ..|.+.++..+-..+..++.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 356688889999999999999998876 357778888888888888888773
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.12 E-value=3.3 Score=40.65 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=56.8
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLR-----ASIIPDEVTYVGV 455 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 455 (720)
.++..++..+..+|+.+.+.+.+++.... |...|..++.+|.+.|+...|+..|+++.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888889999999999998888643 667899999999999999999999888765 5666665554443
Q ss_pred H
Q 005000 456 L 456 (720)
Q Consensus 456 l 456 (720)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.59 E-value=55 Score=36.96 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCcc-hH-----HHHHhHhhhcCChhHHHHHHHHHH
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELD---PDNEA-VY-----VLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.++++.-.-.|+..+..........+- |+... .+ ..+.+.|...|+.++|.+...+..
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 334444333677777655555555432 33222 22 245566888899999998877653
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.24 E-value=1.7 Score=42.90 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=59.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 499 (720)
..-|.++|.+++|+..|.+-+. +.| |.+++..-..||.+...+..|..-...... . -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHH
Confidence 3569999999999999998776 466 889999999999999888877766655431 1 123455666554
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 005000 500 -------HLNEALEVIKNM-PMKPNS 517 (720)
Q Consensus 500 -------~~~eA~~~~~~~-~~~p~~ 517 (720)
+..||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 455555544443 466763
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.21 E-value=13 Score=37.21 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=41.9
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhc--c----CChHHHHHHHHHHHHhCC---CCChhHHHHHHHH
Q 005000 97 KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR--D----IAVEFGKELHCHVLKFGF---DSSVFVQNALIST 159 (720)
Q Consensus 97 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~ 159 (720)
++.+++++.|.+.|++-+.++|.+..-.... . .....++++|+.|.+..+ .++-.++.+|+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 3456688889999998888877664444333 1 235678889999988653 3445566666554
No 295
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.11 E-value=6.9 Score=33.37 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccE
Q 005000 516 NSIVWGALLGACRVHR---DAEMAEMAAKQILE-LDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 590 (720)
...+--.+.++..+.. +..+++.+++.+++ -.|+ .-...+.|+-.+.+.|+|+.+.+..+...+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---------- 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---------- 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh----------
Confidence 3333344444444333 45667777777775 3343 2334445666677777777777777766542
Q ss_pred EEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcc
Q 005000 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630 (720)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 630 (720)
.|++.++..+=+.+..+|++.|++
T Consensus 101 ----------------e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 101 ----------------EPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ----------------CCCcHHHHHHHHHHHHHHhhccee
Confidence 244455555555555677777663
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.08 E-value=20 Score=32.28 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--CHHHHHHHHhhCCCCCcc
Q 005000 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG--QVDMARQYFDQMPERDYV 314 (720)
Q Consensus 237 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~ 314 (720)
+....+.+.+++|+..++..+++.+.+.|++..-..++.--.-+|.......+-.+.... -..-|.+.+.++ ..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL----~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL----GT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh----hh
Confidence 455666778999999999999999999999988888776544444433333332222111 123344444444 23
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 377 (720)
.+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++....+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667788899999999999998775332 2222345667777777766666666666554
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.97 E-value=3.1 Score=38.38 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCChh
Q 005000 495 LGRAGHLNEALEVIKNMPMKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 568 (720)
..+.|+ ++|++.|-.+.-.| +....-..+..|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344454 45666666663333 3344444555566678899999999999987432 6889999999999999998
Q ss_pred HHH
Q 005000 569 NFR 571 (720)
Q Consensus 569 ~a~ 571 (720)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.96 E-value=3.7 Score=36.37 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
..++.+.++.++..+.-+.|..+..-..-++++...|+|.+|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4445555555555555555555555555555555555555555555555433
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.89 E-value=41 Score=34.73 Aligned_cols=148 Identities=10% Similarity=0.016 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc--HHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP---DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--EAH 487 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 487 (720)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+-++|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577777888888888888888888877643211 1222223344455667778888777766531 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 488 YGCMVDLLGRAGHLNEALEV-IKNMPMKPNSIVWGALLGACRVH------RDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
...+...+.. ..+..... ......+.-...+..+..-+... ++.+.+...++++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000112233333333333 788889999999999999887777777766
Q ss_pred hhh
Q 005000 561 YAA 563 (720)
Q Consensus 561 ~~~ 563 (720)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.35 E-value=11 Score=33.73 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHhhCCCCCccchHHHH-----HHHHhcCChhHHHHHHHHHHHCC
Q 005000 294 NRGQVDMARQYFDQMPERDYVLWTAMI-----DGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 294 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
+.+..++|..-|..+.+.+.-.|-.|. ....+.|+...|...|.+.-...
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 344455555555555444444443332 23455666666666666665443
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.06 E-value=4.3 Score=35.37 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..++.+.++.++..+.-+.|+.+..-..-+.++...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36778888888888888888888888888888888888888888888776655
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.06 E-value=24 Score=32.30 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc------HHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN------EAHY 488 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~ 488 (720)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++..-..-..| ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444455555555555555555544333333 23344555555555555555555544311111011 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
..+. +...+++.+|-+.|-..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 2222 23456777777776655
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.77 E-value=50 Score=34.05 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
...+|..+...+++.|+++.|...+.++...++. .+.....-+.+....|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999986532 467777889999999999999999888876333
No 304
>PRK10941 hypothetical protein; Provisional
Probab=84.66 E-value=4 Score=40.11 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+.+-.++.+.++++.|..+.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++.-.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 466778899999999999999999999999999899999999999999999998887765
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.28 E-value=38 Score=32.10 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=15.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 005000 528 RVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
...+++.+|+.+|+++.....+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45567777888887776654443
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.95 E-value=2.3 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.+.-++.+.|+++.|.+..+.+++++|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455678999999999999999999999986543
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.95 E-value=4.6 Score=39.66 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555543
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.77 E-value=1.5 Score=38.53 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHH
Q 005000 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 239 (720)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.+....++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 34445555555555555555554443344444455555555554444444443
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.77 E-value=2.7 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666677777777777777777665
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.41 E-value=12 Score=36.77 Aligned_cols=97 Identities=10% Similarity=0.262 Sum_probs=71.7
Q ss_pred cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 377 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
.|.+....+...++..-....+++++...+-+.... ...+|-.++ -.=++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 445555666667777777778888888888776422 223333332 2346778998888888899999
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
|..|++.++..+.+.+++.+|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999998888777653
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.26 E-value=1.6 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.6
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988653
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.34 E-value=12 Score=34.26 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchH----
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNMP---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVY---- 554 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~---- 554 (720)
..+..+.+.|.+.|+.++|.+.+.++. ..| -...+..++..+...+++..+.....++..+- +.++..-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345567777778888888888777762 112 23455677777777788887777777766542 2222211
Q ss_pred HHHHhHhhhcCChhHHHHHHHHH
Q 005000 555 VLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 555 ~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
..-+-.+...|+|.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 11222334567888888876543
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.04 E-value=12 Score=29.87 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+..+.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3345566666777777899999999999999999999999999998864433 34556766653
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.92 E-value=96 Score=34.99 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=39.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCChhHhhHHhhhhhh---c
Q 005000 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIFVGNALIDMYCK---C 396 (720)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~~---~ 396 (720)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-+.-..... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345567888888888766 2334556666666665544333222211 1111111 01111345677777775 5
Q ss_pred CCHHHHHHHHHhcc
Q 005000 397 GDVEKAQRVFREML 410 (720)
Q Consensus 397 g~~~~A~~~~~~~~ 410 (720)
.++.+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888887664
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.62 E-value=1.7 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=18.4
Q ss_pred chHHHHHhHhhhcCChhHHHHHHH
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888887764
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.55 E-value=28 Score=32.10 Aligned_cols=68 Identities=21% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
|..-..++.+.+.++.|++-..+. .+.|. ......-..+|.+...++.|+.-|+++++.+|....+--
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 334445566666777766665554 34442 122222335677778889999999999999987644433
No 317
>PRK12798 chemotaxis protein; Reviewed
Probab=81.33 E-value=73 Score=33.21 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHhccC----CCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChh
Q 005000 396 CGDVEKAQRVFREMLR----KDKFTWTAMIVGL-AINGHGDKSLDMFSQMLRASIIPDE----VTYVGVLSACTHTGMVD 466 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 466 (720)
.|+.++|.+.+..+.. +....+-+|+.+- ....++.+|+++|++..-. .|.. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888743 2455667776554 4466889999999987653 4543 23444455667889999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHH-HHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGC-MVDLLGRA---GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~---g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (720)
++..+-..-...+...|-...|.. ++..+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988777766666666776544432 33344333 34455555666663222456888888999999999999999999
Q ss_pred HHhcCCCCcchHHHHHhHhhh-----cCChhHHHHHHHHH
Q 005000 543 ILELDPDNEAVYVLLCNIYAA-----CNRWDNFRELRQMI 577 (720)
Q Consensus 543 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 577 (720)
++.+... ...-...+.+|.. ..+.+++.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9998643 3334445555543 34466666655544
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.27 E-value=14 Score=33.53 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC----hhHHHHHHHHHH
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR----WDNFRELRQMIL 578 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 578 (720)
+++|+.-+++++.++|+...++.+++++|...+. -.+|.+.|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5667888888999999999999999999987654 345555555553
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.18 E-value=11 Score=30.39 Aligned_cols=60 Identities=10% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 432 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455555666667788999999999999999999999999999987555433 336766654
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.93 E-value=14 Score=38.52 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=81.7
Q ss_pred HcCChHHHH-HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 426 INGHGDKSL-DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 426 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
..|+...|- +++..+....-.|+.+-..+.+ ..+.|.++.+.+.+.... .-+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhchhhHHHH
Confidence 457776655 4555555555566666555443 678899999888887763 23445566778888888888899998
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 505 LEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 505 ~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
..+-..| +++ ++.............|-++++...+++++.+.|+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777 222 4444444445566777888888888888888765
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.91 E-value=2.9 Score=24.56 Aligned_cols=30 Identities=30% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
|..+...+...|+++.|...+++.++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666665555553
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.81 E-value=2.5 Score=27.45 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=22.1
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4577888899999999999998888755
No 323
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.80 E-value=1 Score=44.56 Aligned_cols=90 Identities=12% Similarity=0.213 Sum_probs=68.6
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 497 RAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 497 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
..|.+++|++.|... ++.| ....|.--.+++.+.++...|++-+..+++++|+....|-..+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777766 4444 44555555677778888888888888888999988888888888888889999999888
Q ss_pred HHHHhCCCccCC
Q 005000 575 QMILDRGIKKTP 586 (720)
Q Consensus 575 ~~m~~~~~~~~~ 586 (720)
....+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888877765443
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.59 E-value=2.9 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444555555555555555555554
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.41 E-value=68 Score=32.25 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c----CcHHHHHHHHHHHHHc
Q 005000 329 FREALTLFREMQTSNIRPDEFTIVSILTACAN--L----GALELGEWVKTYIDKN 377 (720)
Q Consensus 329 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~i~~~~~~~ 377 (720)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+++.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34556677888888888877777664433332 1 1344556666666664
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.57 E-value=7.3 Score=36.16 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=49.5
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 535 (720)
|-..|...-|+--|.+.. .+.|+ +..||.+.--|...|+++.|.+.|+.. +.+|. ..+...-.-++.--|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 445566666665555443 44554 455666666666666777666666665 44442 2222222223334566666
Q ss_pred HHHHHHHHHhcCCCCc
Q 005000 536 AEMAAKQILELDPDNE 551 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~ 551 (720)
|.+-+.+.-+.+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 6666666666666654
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.16 E-value=9.6 Score=36.14 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-------HHHHHHHhcC--CC----CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 517 SIVWGALLGACRVHRDAEMAE-------MAAKQILELD--PD----NEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
...+.-+.+.|+..|+.+... ..|+++.+.+ |. .......++.++.+.|++++|.+.+.++...+-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 345566667788888855544 4444444433 22 245777899999999999999999999876543
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.71 E-value=3.6 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.1
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 329
>PRK09687 putative lyase; Provisional
Probab=78.22 E-value=76 Score=31.61 Aligned_cols=17 Identities=6% Similarity=-0.023 Sum_probs=8.0
Q ss_pred ChHHHHHHHHHHHhcCC
Q 005000 250 NLILENALTDMYAACGE 266 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~ 266 (720)
+..+-...+.++++.++
T Consensus 141 ~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 141 STNVRFAVAFALSVIND 157 (280)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 44444444455555444
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.11 E-value=2.7 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++..++.+|.+.|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 331
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.62 E-value=5.1 Score=41.82 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHH
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKPNSIVWGALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
-+.+.+.++.|..++.++ .++|+-..|-+.= .++.+.+++..|..-+.++++++|.....|+.-+.++.+.+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 344566777777777776 6777655443333 67888889999999999999999998899999999999999999999
Q ss_pred HHHHHHHh
Q 005000 572 ELRQMILD 579 (720)
Q Consensus 572 ~~~~~m~~ 579 (720)
..++....
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88876543
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.27 E-value=15 Score=38.28 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=73.4
Q ss_pred hcCCHHHHH-HHHHhccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 005000 395 KCGDVEKAQ-RVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 395 ~~g~~~~A~-~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
..|++-.|- ++|..+.. .+++........+...|+++.+...+...... +.....+...++......|++++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 356665554 34443321 13333222333455678888888877665442 344556777788888888888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGA 526 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~ 526 (720)
-+.|. ...++ +++....-.-.-...|-++++.-.+++. .+. |...-|-.+++.
T Consensus 380 a~~~l-~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 380 AEMML-SNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHh-ccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 77775 22222 3333332222334456778888877776 233 344556555544
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.21 E-value=1.3e+02 Score=33.58 Aligned_cols=79 Identities=13% Similarity=-0.005 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc-C--ChhHHHH
Q 005000 500 HLNEALEVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC-N--RWDNFRE 572 (720)
Q Consensus 500 ~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~ 572 (720)
+.+.+..++.+...+-+......|...+.. ..+++.|...+.++-+.. +.....++.++... | .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 455566666665444455555555544332 235777777777777666 56777777777542 1 2677888
Q ss_pred HHHHHHhCC
Q 005000 573 LRQMILDRG 581 (720)
Q Consensus 573 ~~~~m~~~~ 581 (720)
.++...+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 877776543
No 334
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.93 E-value=1.4 Score=38.80 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=56.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhH
Q 005000 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDE 199 (720)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (720)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666666777777777777777766666778888888888888877888777774322 333455666666666666
Q ss_pred HHHHHHHH
Q 005000 200 TRKLFGEM 207 (720)
Q Consensus 200 A~~l~~~m 207 (720)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666554
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.82 E-value=5.4 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
.+++.|...|...|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777788888888888887777653
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.33 E-value=16 Score=29.14 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=34.7
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.+.+-|++.+..+.+.||++.+|+..|.++++-+...-.++...|-
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~ 80 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYP 80 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHH
Confidence 3456789999999999999999999999999977644332333443
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.30 E-value=33 Score=37.08 Aligned_cols=148 Identities=20% Similarity=0.161 Sum_probs=97.6
Q ss_pred cCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
.|+++.|..++-.+++ ..-+.++.-+...|..++|+++- ..||.. |. ...+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-Fe----lal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQR-FE----LALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhhh-hh----hhhhcCcHHHHHHHHHhh
Confidence 5677777776655542 23445556666677777776542 233332 22 234678888888877654
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.+..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+....|..
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A--- 727 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA--- 727 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH---
Confidence 245678889999999999999999987752 3667777777888877655565555555554422
Q ss_pred HHHhHhhhcCChhHHHHHHHH
Q 005000 556 LLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~ 576 (720)
-.+|...|++++..+++..
T Consensus 728 --F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 --FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHcCCHHHHHHHHHh
Confidence 2356678999998887654
No 338
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.98 E-value=42 Score=34.84 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=51.5
Q ss_pred CHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHhHhh-hcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALL---GACRVHRDAEMAEMAAKQILELDPD-NEAVYVLLCNIYA-ACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 579 (720)
|...|.++. ....+.|-+..|.+..+-++.++|. ||-.-...++.|+ +.++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 455555544 5678899999999999999999999 8888888888885 67888888888776654
No 339
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.96 E-value=32 Score=27.68 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 130 AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 130 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
..++|.-+-+.+...+-. ...+.-.-++.+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345666666555553321 33333333456778899999999999999999999988765 366777777777777776
Q ss_pred CCCCCCHhhH
Q 005000 210 KGVLPTSVTI 219 (720)
Q Consensus 210 ~g~~p~~~t~ 219 (720)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.54 E-value=19 Score=29.15 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=32.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|-.+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 345679999999999999999999999999998876544433344433
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.45 E-value=72 Score=29.45 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH-----HHHHHHHhcCCHHHH
Q 005000 432 KSLDMFSQMLRASIIPDEVTYV--GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-----CMVDLLGRAGHLNEA 504 (720)
Q Consensus 432 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA 504 (720)
+.....+++....-+-..-++. .+...+...|++++|..-++... + .|.-+.+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~-~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---A-QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---c-cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555555542121122222 23445677888888888887654 1 22223333 344567788999999
Q ss_pred HHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 505 LEVIKNMPMKPNSIVWGA-----LLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
+..++... ...|.+ -...+...|+-++|+..|+++++.++++
T Consensus 146 L~~L~t~~----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99988752 223333 3356888899999999999999887543
No 342
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.81 E-value=4.4 Score=25.26 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=11.5
Q ss_pred CChhHhhHHhhhhhhcCCHHHHH
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
.+..+|+.|...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445555555555555555543
No 343
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.94 E-value=1.8e+02 Score=32.97 Aligned_cols=116 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred cCChHHHHHHHHHHHHC-CCCCChH--HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 005000 427 NGHGDKSLDMFSQMLRA-SIIPDEV--TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 503 (720)
..+.+.|..++.+.... +..+... ....+.......+..+++...+.... .-..+.....--+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHH
Confidence 45567888888876443 2333332 23333333333322556666665432 111234444444555558888888
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 005000 504 ALEVIKNMPMK-PNSIVWGA-LLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 504 A~~~~~~~~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
+...|..|+.. .+..-|.- +..+....|+.++|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888421 12222322 33555667888888888888743
No 344
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.48 E-value=17 Score=34.45 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=47.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+...|++-++++....++...|.|..+|...+.+.+..=+..+|.+-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 4456778899999999999999999999999999998888888888888887765
No 345
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.48 E-value=8.1 Score=30.74 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+.++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566677778888888888888888888888888877766654
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.39 E-value=43 Score=33.19 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=68.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK-------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV 217 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 217 (720)
|......+-..++..-....+++++...+-.... ++. +-.++++-+. .=++++++.++..=...|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444455556666666666778888777654432 122 2223333333 336778888888888889999999
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHcC
Q 005000 218 TIVLVLSACAKLKDLDVGKRAHRYVKECK 246 (720)
Q Consensus 218 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 246 (720)
|+..+|+.+.+.+++..|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888888777654
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.25 E-value=80 Score=28.55 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=75.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH-----HHHHHh
Q 005000 424 LAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM-----VDLLGR 497 (720)
Q Consensus 424 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~ 497 (720)
+++.+..++|+.-|..+.+.|...=. .............|+...|...|.++-.. .|-+....-+ .-++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 35667788888888888876643221 12223344566788888888888887532 2222222111 234567
Q ss_pred cCCHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 498 AGHLNEALEVIKNMPMK--PN-SIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 498 ~g~~~eA~~~~~~~~~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
.|.+++.....+.+..+ |- ...-.+|.-+-.+.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888888777322 21 23345677777888999999999888876
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.86 E-value=14 Score=36.14 Aligned_cols=60 Identities=17% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++-....|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--+|.+-++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344457789999999999999999999999999999999999999998888887777743
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.57 E-value=75 Score=27.94 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=35.9
Q ss_pred hcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005000 461 HTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~ 529 (720)
..++.+++..++..|. -+.|+. +.-..-+-.+.+.|++++|..+|++..-.+ ....-..|+..|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 4667777777777664 334432 122223344667777888888777774332 33333444444443
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.32 E-value=1.1e+02 Score=29.72 Aligned_cols=221 Identities=17% Similarity=0.218 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----c-CCCCChhHh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQT---SNI--RPDEFTIVSILTACANLGALELGEWVKTYIDK----N-KVKNDIFVG 386 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~-~~~~~~~~~ 386 (720)
..+|..+.+.|++++.+..|.+|.. ..+ .-+..+.++++.-.+...+.+.-..+++.-.+ . +-..--.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 4456666777777777777766642 111 12344566666665555555554444443221 1 111112233
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccCC--------C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLRK--------D-------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
.-|...|...|.+..-.+++.++... | ...|..=|..|....+..+-..++++.+.-.-......
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 45777788888888888888776211 1 24566667888888888888888888765332222334
Q ss_pred HHHHHHHHH-----hcCChhhHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCC----HHHHHHHHHhCCCCCCH
Q 005000 452 YVGVLSACT-----HTGMVDEGREYFADMTIQHGIEPNE-----AHYGCMVDLLGRAGH----LNEALEVIKNMPMKPNS 517 (720)
Q Consensus 452 ~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~----~~eA~~~~~~~~~~p~~ 517 (720)
...+++-|. +.|.+++|..-|-++.+.+.-..++ --|-.|..++.+.|- -+||.- ..-.|..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEI 304 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEI 304 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHH
Confidence 455677664 4678888765544443344322222 235556677777662 122110 0133556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
.....|+.+|..+ +.. .|+++++.
T Consensus 305 lAMTnlv~aYQ~N-dI~----eFE~Il~~ 328 (440)
T KOG1464|consen 305 LAMTNLVAAYQNN-DII----EFERILKS 328 (440)
T ss_pred HHHHHHHHHHhcc-cHH----HHHHHHHh
Confidence 6778888888654 333 35555544
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.24 E-value=39 Score=31.38 Aligned_cols=43 Identities=5% Similarity=-0.028 Sum_probs=17.3
Q ss_pred cCChhhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHH
Q 005000 462 TGMVDEGREYFADMTIQHG--IEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
..+.+++++++....+-.+ -.+|++.+..|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444332111 123344444444444444444443
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.22 E-value=9.3 Score=22.00 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 005000 490 CMVDLLGRAGHLNEALEVIK 509 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~ 509 (720)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555566666666665554
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.91 E-value=2.2e+02 Score=32.79 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=96.8
Q ss_pred hcCCHHHHHHHHHhcc----CCC-------HHHHHHHHHH-HHHcCChHHHHHHHHHHHHC----CCCCChHHHHHHHHH
Q 005000 395 KCGDVEKAQRVFREML----RKD-------KFTWTAMIVG-LAINGHGDKSLDMFSQMLRA----SIIPDEVTYVGVLSA 458 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~----~~~-------~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a 458 (720)
...++++|..+..+.. .++ ...|+++-.. ....|++++|+++.+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4567777777776652 221 2356665433 34567888888888776653 122333455556666
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH-----HHHHhcCCHHH--HHHHHHhC-----CCCC----CHHHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV-----DLLGRAGHLNE--ALEVIKNM-----PMKP----NSIVWGA 522 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~e--A~~~~~~~-----~~~p----~~~~~~~ 522 (720)
..-.|++++|..+.++.. +..-.-+..++...+ ..+...|+... .+..+... +-+| -..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 667788888887776653 222223333333222 33455663222 22222222 1122 2234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCC---cchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILEL----DPDN---EAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
++.++.+ .+.+..-..+.++. .|.. ...+..|+.++...|+.++|...++.+..-.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4444433 44444444444443 2221 1223467888888888888888887776543
No 354
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.64 E-value=2.6e+02 Score=33.41 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=10.8
Q ss_pred hhcCCCCchhHHHHHHHHHhcCCH
Q 005000 275 GNIKNKDVISWTAIVTGYINRGQV 298 (720)
Q Consensus 275 ~~~~~~~~~~~~~li~~~~~~g~~ 298 (720)
..+.++|...-..-+..+.+.+..
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~~ 651 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTPP 651 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcch
Confidence 333344444444444444444443
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.11 E-value=8.7 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=22.7
Q ss_pred HHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 555 VLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 555 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..|+.+|...|+.+.|+++++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999887544
No 356
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=67.40 E-value=1.4e+02 Score=29.76 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.1
Q ss_pred HHhHhhhcCChhHHHHHHHHHH
Q 005000 557 LCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
-+..+.+.++|++|.+.++...
T Consensus 252 ~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 252 KGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHhhcCHHHHHHHHHHHH
Confidence 3556778999999999988644
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.14 E-value=23 Score=33.17 Aligned_cols=63 Identities=19% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+.-+..+.+.+++++|+...+.- ..+| |...-..+...++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456777888888888876654 5566 555666777888888999998888888888888753
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.59 E-value=2.2e+02 Score=31.75 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhCCCCCCHHH--HHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc-CChhHHHHHH
Q 005000 500 HLNEALEVIKNMPMKPNSIV--WGALLGAC--RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC-NRWDNFRELR 574 (720)
Q Consensus 500 ~~~eA~~~~~~~~~~p~~~~--~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~ 574 (720)
+...|.++|......-.... +.++.... ....+.+.|...++++-+.++ +.+...++..+.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 45566666666532222222 22222111 133467778888888877773 34444455444332 7777777777
Q ss_pred HHHHhCCCc
Q 005000 575 QMILDRGIK 583 (720)
Q Consensus 575 ~~m~~~~~~ 583 (720)
..+.+.|.+
T Consensus 421 ~~~a~~g~~ 429 (552)
T KOG1550|consen 421 LYLAELGYE 429 (552)
T ss_pred HHHHHhhhh
Confidence 777766654
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.03 E-value=16 Score=34.68 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=54.5
Q ss_pred CHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 500 HLNEALEVIKNM-PMKPNSIVW-GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 500 ~~~eA~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+++.|..-+.+. -+.|++.+| ..=+-.+.+..+++.+..--.+++++.|+.......|+........+++|+..+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 444455444443 456666444 444445566777788888888888888887778888888888888888888877776
Q ss_pred Hh
Q 005000 578 LD 579 (720)
Q Consensus 578 ~~ 579 (720)
..
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 43
No 360
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.50 E-value=1.1e+02 Score=31.96 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=61.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHcCC-CccHHHHHHHHHHHHh
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPDEV--TYVGVLSACT--HTGMVDEGREYFADMTIQHGI-EPNEAHYGCMVDLLGR 497 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~ 497 (720)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 334678888899999888876 555554 3444444444 345677888888876532110 0112223333332222
Q ss_pred cCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 005000 498 AGHLNEALEVIKNMPMKPNSI-VWGALLGACR--VHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 498 ~g~~~eA~~~~~~~~~~p~~~-~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 546 (720)
...+.........-..++... ...-+.++-+ ..|+++.|...+-+++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222222111111112122 2223334443 468888888777777764
No 361
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.38 E-value=70 Score=26.23 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005000 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 294 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
..|++++|...=.....||...|-++.. .+.|..+++...+.++..+|
T Consensus 52 NrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 52 NRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred hhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3344444422222333345555544433 35666666666666665554
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.26 E-value=1.5e+02 Score=29.13 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=77.5
Q ss_pred hcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHH----HHCCCCCCHhhHHHHHHHHhcCCCch-HHH
Q 005000 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEM----ERKGVLPTSVTIVLVLSACAKLKDLD-VGK 236 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 236 (720)
+.+++++|.+++-.. ...+.+.|+...|-++-.-| .+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 455666776665332 23455666665554443333 33466666665555555554333211 122
Q ss_pred HHHHHHHH---cC--CCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005000 237 RAHRYVKE---CK--IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311 (720)
Q Consensus 237 ~~~~~~~~---~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 311 (720)
.+...+++ .| ...|+.....+...|.+.|++.+|+..|=.-.+++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 23333322 22 2347778888889999999999999888655444443333344333333333322
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTS 342 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (720)
|.. ..-.+--|...++...|...+....+.
T Consensus 141 dlf-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLF-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHH-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111 122333456667777777777665543
No 363
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.14 E-value=1.6e+02 Score=29.25 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=62.1
Q ss_pred CchHHHHHHHHhHh-CCCCCCcccHHHHHHHHhc-cC-ChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHHH
Q 005000 95 SHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTR-DI-AVEFGKELHCHVLKF-GFDSSVFVQNALISTYCLCGEVDMAR 170 (720)
Q Consensus 95 ~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~ 170 (720)
...+|+.+|+..-- ..+--|......+++.... .+ .+..--++.+.+... |-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34456666653221 2244455566666666543 11 222233344444432 23556666667777777777777777
Q ss_pred HHHhcC-----CCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 005000 171 GIFDVS-----YKDDVVTWNAMFSGYKRVKQFDETRKLFG 205 (720)
Q Consensus 171 ~~f~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 205 (720)
++++.. +..|...|..+|......|+..-...+..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777642 33467777777777777777655544443
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.13 E-value=1.4e+02 Score=28.59 Aligned_cols=87 Identities=17% Similarity=0.317 Sum_probs=50.1
Q ss_pred CChhhHHHHHHHHHHHcCC-CccHHHHHHHH---HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHhc
Q 005000 463 GMVDEGREYFADMTIQHGI-EPNEAHYGCMV---DLLGRAGHLNEALEVIKNM---PMKPNSIVWGA---LL--GACRVH 530 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li---~~~~~~g~~~eA~~~~~~~---~~~p~~~~~~~---ll--~~~~~~ 530 (720)
.++++|+..|+..-+-+.. +.+...-.|++ +.-+..|++.+|+++|++. .+..+..-|.. ++ ..|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555566666555322221 12222223333 3346778899999999887 33333444422 22 224333
Q ss_pred -CCHHHHHHHHHHHHhcCCC
Q 005000 531 -RDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 531 -g~~~~a~~~~~~~~~~~p~ 549 (720)
.|.-.+..++++-.+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 6777788899999999997
No 365
>PRK10941 hypothetical protein; Provisional
Probab=63.17 E-value=50 Score=32.60 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+.+-..|.+.++++.|+...+.+ .+.| ++.-|.--.-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 44566788899999999998887 5556 5666777777789999999999999999999998876543
No 366
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.48 E-value=2.3e+02 Score=30.35 Aligned_cols=455 Identities=13% Similarity=0.050 Sum_probs=0.0
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC-hHHHHHHHHHHHH
Q 005000 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-VEFGKELHCHVLK 143 (720)
Q Consensus 65 ~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~ 143 (720)
+..|..-|.. |+..|..-|.-+-+.+.+.+.-.+|.+|+... +.|+..|.....-....+. ++.|+.++...++
T Consensus 94 yr~at~rf~~----D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 94 YRRATNRFNG----DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHhcCC----CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005000 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223 (720)
Q Consensus 144 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 223 (720)
.. +..+..|-....+-...-.--.+++..-.....+. .-=...|...........=...|..+... .
T Consensus 169 ~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~eie~ge~~~~~~~~s~~~~~~~~k~~e-----~ 235 (568)
T KOG2396|consen 169 FN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEEIERGELAWINYANSVDIIKGAVKSVE-----L 235 (568)
T ss_pred cC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHHHHHHHHHHHhhccchhhhhcchhhcc-----h
Q ss_pred HHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 005000 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303 (720)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (720)
...-......+-.+-.......+.+.++.++. +.|.+.++-....+......+-.++--..+.+....
T Consensus 236 ~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~------------~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~ 303 (568)
T KOG2396|consen 236 SVAEKFDFLKELQKNIIDDLQSKAPDNPLLWD------------DLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCA 303 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccHH------------HHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHH
Q ss_pred HHhhCCCC--CccchHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 005000 304 YFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQ-----TSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376 (720)
Q Consensus 304 ~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 376 (720)
+|+....+ ....|+..|..+...-....-..+...|. ..+......-+...............+...-..+..
T Consensus 304 v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~ 383 (568)
T KOG2396|consen 304 VYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTT 383 (568)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhH
Q ss_pred cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-----LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 377 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
.++..+...|-.-+........ ++.-+|.+. ...-...+-....+..+..-...-+.++-.....-..|+..|
T Consensus 384 e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 384 ELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred HHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceee
Q ss_pred HH-HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH---HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 005000 452 YV-GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL---LGRAGHLNEALEVIKNM--PMKPNSIVWGALLG 525 (720)
Q Consensus 452 ~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~---~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~ 525 (720)
+. .++.-+-..|-+.+|...+..+. .--+|+...|.-||.. ...+| +.-+.++++.| .+..|+..|...+.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~--~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQ--ELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHH--hCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHh-cCCCCcchH
Q 005000 526 ACRVHRDAEMAEMAAKQILE-LDPDNEAVY 554 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~ 554 (720)
--..+|..+.+-.++.++++ ++|....++
T Consensus 539 ~e~~~g~~en~~~~~~ra~ktl~~~~~~af 568 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMKTLQGESAEAF 568 (568)
T ss_pred hhccCCCcccccHHHHHHHHhhChhhhhcC
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.09 E-value=1.7e+02 Score=31.06 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=33.6
Q ss_pred cchHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005000 314 VLWTAMIDGYLR---VNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361 (720)
Q Consensus 314 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 361 (720)
..+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++...
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 345556666655 478999999999999999888766555555554333
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.08 E-value=22 Score=38.20 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=71.6
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVDLLGRAGHLNEALEVIKNM-P-MKPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
.-.|+...|...+..+. ...|.. ...-.|...+.+.|...+|-.++.+. . ....+.++.++.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34688888888877654 344421 23345667777888888888887664 2 22356778888899999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
|++.++++++++|+++..-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999988877766544
No 369
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.74 E-value=1.6e+02 Score=33.02 Aligned_cols=191 Identities=19% Similarity=0.288 Sum_probs=106.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccCcHHHHHHHHHHHHHc-C-CCCC
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF----------TIVSILTACANLGALELGEWVKTYIDKN-K-VKND 382 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~-~~~~ 382 (720)
+-..++-.|....+++..+++.+.+... ||.. .|.-.++--.+-|+-+.|..+.--+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3445666677777788888888777753 3322 2333333334456666666555444432 2 222
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH---HHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT---YVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~ 459 (720)
++||-||++ |+.|. +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 345556543 33331 11233444555667777877665 4666543 34444332
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
.+ .++...++- .-| -.|-.+++|.|.+++-.++++- ...+.+-.-.+++.+|.++
T Consensus 334 G~--~Fens~Elq-----~Ig--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLELQ-----QIG--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHHH-----HHH--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHH
Confidence 21 122222211 111 1244578899998887777743 2345666778899999999
Q ss_pred HHHHHhcCCCCcchHHHHHh
Q 005000 540 AKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~ 559 (720)
.+.+.++.|...-.-..+.+
T Consensus 389 ae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 389 AEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HHHHhccCCceehHHHHHHH
Confidence 99999999976443333333
No 370
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.67 E-value=88 Score=33.84 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=32.0
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccC--CCHHHHHH---HHHHHHHcCChHHHHHHHHHHHH
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTA---MIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
..|+.-|.+.+++++|..++..|.= -....|.. +.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3577788999999999999988831 12233333 33333444334444444444443
No 371
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=2.1e+02 Score=29.58 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhc---CCC----
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL------------LGACRVHRDAEMAEMAAKQILEL---DPD---- 549 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~---~p~---- 549 (720)
..|...+..+|+.++|..++.+.+++ ||+++ +..|...+|+-.|.-+.+++... +|+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 35667788999999999999988533 33332 36788899999999888887653 233
Q ss_pred CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEE
Q 005000 550 NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFV 601 (720)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 601 (720)
-...|..+..+....+.+-++.+.++..-..|..+....-|+.+-..+-.|+
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 1247888899999999999999999999887766553334665444443444
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.59 E-value=25 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=14.3
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005000 501 LNEALEVIKNM-PMKPNSIVWGALLGACR 528 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p~~~~~~~ll~~~~ 528 (720)
+++|.+.|++. ..+|+..+|+.-+..+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 44455555554 34566666666655553
No 373
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.48 E-value=1.6e+02 Score=28.20 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHHH--HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 005000 418 TAMIVGL--AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495 (720)
Q Consensus 418 ~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 495 (720)
...+.|+ ..++++++|++++-.- .+.|+... -++.++...|+.+.|..+++.+. ..-.+.+....+...
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-
Confidence 3344443 3456666666665221 12222221 35666666777777777776542 111222333333333
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005000 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHR 531 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g 531 (720)
..+|.+.||..+.+....+-....|..++..|....
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556788888877777642222346666666665443
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.39 E-value=38 Score=26.58 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=14.7
Q ss_pred CCHHHHHHHHhhCCCCCccchHHHHHHHHhcCCh
Q 005000 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 329 (720)
|+.+.|.++++.++ +.+-.|...+.++...|..
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 44444444444444 4444444444444444443
No 375
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.72 E-value=15 Score=34.52 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=46.0
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
+..+.|+.+.|.+++.+. ..-| ....|--+...-.+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 455677888888888776 4445 57788888888889999999999999999998876
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.43 E-value=28 Score=27.92 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDN---------EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+.||+..|.+.+.+.++..... ..+...++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778888887777777643221 13445678888899999999999888765
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.25 E-value=17 Score=21.60 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777665554
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.66 E-value=70 Score=32.12 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-P---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
|--=.+-|.+..++..|...|.+- . -.| +.+.|+.-..+-...|++..++.-..+++..+|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333455688889999999999875 1 223 4667777777777889999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHH
Q 005000 562 AACNRWDNFRELRQMI 577 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m 577 (720)
....++++|....+.-
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999977777665544
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.62 E-value=2e+02 Score=28.92 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCCCcchH
Q 005000 535 MAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~ 554 (720)
.|.++..++.+.+|.-|...
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 36778888888888755443
No 380
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.50 E-value=1.2e+02 Score=26.56 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=38.2
Q ss_pred CCeeeHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 179 DDVVTWNAMFSGYKRVKQ-FDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 179 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.+-.+|++++.+..+..- ---+..+|..|++.+.+++..-|..++.+|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888888866655 445677888888877888888888888887654
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.30 E-value=4e+02 Score=31.80 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=85.1
Q ss_pred HHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHHcCCCCC
Q 005000 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL-GEWVKTYIDKNKVKND 382 (720)
Q Consensus 304 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~~~~~~ 382 (720)
+...+.++|...-...+.++.+.+..+. +.... -.++...-.....++...+..+. +...+..+.+ .++
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d 788 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPD 788 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCC
Confidence 3344455555554555555555443322 11122 24455555556666655554332 2223333332 345
Q ss_pred hhHhhHHhhhhhhcCCHHHHH-HHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 383 IFVGNALIDMYCKCGDVEKAQ-RVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. .++...+..+.. .|+...-...+.++..
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhc
Confidence 667777777777777765543 33444445565555556666666664 456666666664 4566555566667766
Q ss_pred cCChhhHHHHHHHHH
Q 005000 462 TGMVDEGREYFADMT 476 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~ 476 (720)
.+....+...+..+.
T Consensus 865 ~~~~~~a~~~L~~al 879 (897)
T PRK13800 865 WPGDPAARDALTTAL 879 (897)
T ss_pred cCCCHHHHHHHHHHH
Confidence 543445666666554
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.92 E-value=44 Score=29.19 Aligned_cols=66 Identities=17% Similarity=0.037 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhH
Q 005000 501 LNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569 (720)
Q Consensus 501 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (720)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+-...+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777777774 333444455667789999999999999999999999998899988887765443
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.74 E-value=1.2e+02 Score=29.71 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=48.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh---
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK--- 395 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~--- 395 (720)
=|.+++..|++.+++...-+--+.--+......-.-|-.|++.+......++-..-.+..-..+..-|.++++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 37788888888888877655443221222223333333456666666666665555543323333446666665543
Q ss_pred --cCCHHHHHHHH
Q 005000 396 --CGDVEKAQRVF 406 (720)
Q Consensus 396 --~g~~~~A~~~~ 406 (720)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46666666554
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.15 E-value=1.1e+02 Score=33.27 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=57.1
Q ss_pred HhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHH
Q 005000 161 CLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240 (720)
Q Consensus 161 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 240 (720)
.+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3566777776665432 3455677777777777777777777766543 3445555556666655555555
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 005000 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGN 276 (720)
Q Consensus 241 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 276 (720)
...+.|.. |...-+|...|+++++.+++.+
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 55554432 2223345555666666655543
No 385
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.77 E-value=2.8e+02 Score=29.22 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=41.3
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS 444 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 444 (720)
..|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+....+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 35677788888888888888877555 45677777777777777666666666655554
No 386
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.57 E-value=1e+02 Score=24.44 Aligned_cols=62 Identities=21% Similarity=0.104 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHhHhhhcCCh-hHHHHHHHHH
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--NEAVYVLLCNIYAACNRW-DNFRELRQMI 577 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 577 (720)
|......+...+...|+++.|.+.+-.+++.+|+ +...-..|..++.-.|.- .-+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5667777888889999999999988888888765 466777788888777774 3555555554
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.86 E-value=83 Score=26.68 Aligned_cols=71 Identities=11% Similarity=0.205 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 432 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
+..+-+.......+.|+.......++||.+.+++..|.++|+-++. ...+....|..++ ++-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH---------HHHHHHHHHh
Confidence 3444555666677899999999999999999999999999998864 3444444566555 3444556666
Q ss_pred CC
Q 005000 512 PM 513 (720)
Q Consensus 512 ~~ 513 (720)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 44
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.67 E-value=27 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=13.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 005000 187 MFSGYKRVKQFDETRKLFGEMERK 210 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~~~ 210 (720)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555666666666666655543
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.17 E-value=48 Score=21.03 Aligned_cols=30 Identities=13% Similarity=-0.149 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q 005000 520 WGALLGACRVHRDAEMAEMA--AKQILELDPD 549 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 549 (720)
|-++.-.+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555556666677777766 3355555554
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.84 E-value=53 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 514 KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444455555555555555544444
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.76 E-value=44 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 005000 488 YGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~ 507 (720)
..+++.+|+..|++++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555444443
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.28 E-value=3.2e+02 Score=28.46 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=51.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCc--cHHHHHHHHHHH-HhcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEP--NEAHYGCMVDLL-GRAGHLNEALEVIKNMPM--KPN------SIVWGALL 524 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~-~~~g~~~eA~~~~~~~~~--~p~------~~~~~~ll 524 (720)
+..+.+.|-+..|.++.+-+. .+.| |+.....+||.| .++++++--+++.+.... ..+ ...|+..+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 345667777777777776664 3444 344444556665 366777666666665422 111 12333333
Q ss_pred HHHHhcCCH---------------HHHHHHHHHHHhcCCC
Q 005000 525 GACRVHRDA---------------EMAEMAAKQILELDPD 549 (720)
Q Consensus 525 ~~~~~~g~~---------------~~a~~~~~~~~~~~p~ 549 (720)
.-+. .++. +.|...+++++..-|.
T Consensus 187 A~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 3333 3333 7888888888888774
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.10 E-value=3.4e+02 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=10.6
Q ss_pred HHHHHhcCChHHHHHHHhcC
Q 005000 157 ISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~~ 176 (720)
+...++.|+.+....+++..
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 33444556666655555543
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.62 E-value=1.1e+02 Score=30.12 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhC--CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 005000 85 TMIKGYSRIDSHKNGVLIYLDMLKS--DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCL 162 (720)
Q Consensus 85 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 162 (720)
.=|.+++..++|.+++...-+--+. .++| ......|-.|.+.+......++-..-++..-..+..-|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3478899999999887755443321 1222 23344444567888888877777777664333334446666666654
Q ss_pred -----cCChHHHHHHH
Q 005000 163 -----CGEVDMARGIF 173 (720)
Q Consensus 163 -----~g~~~~A~~~f 173 (720)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 47777777765
No 395
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.31 E-value=3.7e+02 Score=29.00 Aligned_cols=162 Identities=12% Similarity=0.143 Sum_probs=78.1
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
|....-++++.++..-...-.+.+..+|.. .+-..+..++..|.++ ..++-..+++++.+.. -|.+.+.--+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 334444556666665555555666655532 3445566666666666 4455666666666542 2333333333333
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPN------EAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVWGALLGACRV 529 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~ 529 (720)
...++.+.+..+|..+. +.+.|. .+.|.-++..- ..+.+.-+.+..+. +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~--yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKAL--YRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHH--HHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 34466666666666654 233331 12333333221 12333333333333 222223333333344555
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 005000 530 HRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~ 550 (720)
..++.+|++++..+++.+..|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 566666666666666554443
No 396
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.93 E-value=26 Score=34.44 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=36.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.+.|+.++|..+|+.. .+.| ++....-+......+++.-+|.+.|-+++.+.|.+..+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3566777777776654 4445 3344444444555566777777777777777777665544
No 397
>PF15469 Sec5: Exocyst complex component Sec5
Probab=48.89 E-value=1.7e+02 Score=26.86 Aligned_cols=115 Identities=12% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHh
Q 005000 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGR 497 (720)
Q Consensus 419 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 497 (720)
.++..-.+......++.++++..- .+..-.-|.-|...|+++.+...|.++..-++-.. ....+..
T Consensus 62 pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~------- 128 (182)
T PF15469_consen 62 PLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK------- 128 (182)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH-------
Confidence 333333334444555555555332 12223456677788888888888877753222111 1112211
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 498 ~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
-+++...+++... ...|..|.... ...++...+...+++++|++..++.
T Consensus 129 --v~~eve~ii~~~r----~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 129 --VWSEVEKIIEEFR----EKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred --HHHHHHHHHHHHH----HHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 1233333333221 12222222221 4567777777888888876434443
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.42 E-value=49 Score=25.43 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=20.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhHHHH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
...+.++|+..|...++.-..|.. .++..++.+++..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554443222221 2444444555555554444443
No 399
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.35 E-value=42 Score=38.08 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=72.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 506 (720)
+.++++.+.+.+...--| .++|.-+.+.|-.+-|+.+.+.=... ..+...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 455666665544322222 23455556777777777766543211 234456899999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 507 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
.-.+.. |..+|..|......+|+.+.|+..|++....+ .|+-+|.-.|+.++-.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE--------KLSFLYLITGNLEKLSK 719 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh--------heeEEEEEeCCHHHHHH
Confidence 887764 77889999998888999999988888765433 34444555555544333
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=47.19 E-value=2.6e+02 Score=26.55 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMV 492 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li 492 (720)
.+..++.+.+.+...+|+.+.++-++.. +-|.-+-..++..++-.|++++|..-++-.. .+.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3445667777788888888887776652 2233455566777888888888877666543 23343 34444444
Q ss_pred HHHHhcCCHHHHH-HHHHhC--C-C-CCCHHHHHHH-HHH--HHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 493 DLLGRAGHLNEAL-EVIKNM--P-M-KPNSIVWGAL-LGA--CRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 493 ~~~~~~g~~~eA~-~~~~~~--~-~-~p~~~~~~~l-l~~--~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.. +.+. ++|..- | + -.....|-.. +.+ |...|.-+.+..+-+.+++.-|..+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 32 2222 223221 1 1 1123445443 333 3333455556666677777766543
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.58 E-value=25 Score=30.05 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 005000 93 IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125 (720)
Q Consensus 93 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 125 (720)
.|.-..|-.+|..|+++|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45566788999999999988875 66777654
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.13 E-value=31 Score=33.96 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=63.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCC
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKS 606 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 606 (720)
.++.|+.++|..+++.++.+.|+++.+...++.......++-+|.+.+-+. +.-.|+.|-..+ ..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A----LtisP~nseALv--------nR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA----LTISPGNSEALV--------NRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee----eeeCCCchHHHh--------hhhcc
Confidence 568899999999999999999999999888888877777777777765543 233444433222 22334
Q ss_pred CcCcHHH-HHHHHHHHHHHHhcCcccCCCccc
Q 005000 607 HPQTKEI-YLKLDEMTSDLKFVGYMPDISEVF 637 (720)
Q Consensus 607 ~~~~~~~-~~~l~~l~~~~~~~g~~~d~~~~~ 637 (720)
-|-.++| ..+|+.+.++-++....|...+.+
T Consensus 194 ~plV~~iD~r~l~svdskrd~~~~i~~sN~AL 225 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDSKRDEFNHIQHSNTAL 225 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccHHH
Confidence 4555555 334444444444445555554444
No 403
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.38 E-value=51 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCCh
Q 005000 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF 329 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 329 (720)
..+.++|.++++.++.+...+|.....++...|..
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 34445555555555555555555555555544443
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.31 E-value=1.7e+02 Score=24.05 Aligned_cols=81 Identities=9% Similarity=0.037 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005000 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310 (720)
Q Consensus 231 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 310 (720)
..++|..+.+.+...+- ....+.-.-+..+.+.|++++|+..=.....||..+|-++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666677776666543 233344444556777888888854444455577777766543 467777777777776655
Q ss_pred CCcc
Q 005000 311 RDYV 314 (720)
Q Consensus 311 ~~~~ 314 (720)
.+..
T Consensus 98 ~g~~ 101 (116)
T PF09477_consen 98 SGSP 101 (116)
T ss_dssp -SSH
T ss_pred CCCH
Confidence 4433
No 405
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.10 E-value=5.1e+02 Score=29.41 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHhhCCCCC---ccch----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 005000 294 NRGQVDMARQYFDQMPERD---YVLW----TAMIDGYLRVNRFREALTLFREMQTS 342 (720)
Q Consensus 294 ~~g~~~~A~~~f~~~~~~~---~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (720)
..|...+|.+++..-..++ ...| ..+.-|+...|..+...+.+.+-++.
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~ 424 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT 424 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHh
Confidence 4566677777776544332 2222 12334455555555566666655543
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.82 E-value=73 Score=34.52 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=88.0
Q ss_pred CCCChHHHHHHHHHHHhc--CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHhC-CCCC--CHH
Q 005000 445 IIPDEVTYVGVLSACTHT--GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG-RAGHLNEALEVIKNM-PMKP--NSI 518 (720)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~eA~~~~~~~-~~~p--~~~ 518 (720)
--|+..|.-.++.-...- ..-+-|-.++..|. ..+.|--...| +..+|- -.|+...|.+.+... ..+| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346666655554433322 22234555665553 33344322222 223343 468889999988776 3444 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..-.|.....+.|..-.|-.++.+.+.+....|-++..++++|....+.+.|.+.++...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 455566666777777788889999999887788899999999999999999999988776543
No 407
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.42 E-value=4.1e+02 Score=28.08 Aligned_cols=146 Identities=11% Similarity=0.085 Sum_probs=66.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCee--eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHHhcCC
Q 005000 156 LISTYCLCGEVDMARGIFDVSYKDDVV--TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV---TIVLVLSACAKLK 230 (720)
Q Consensus 156 li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~ 230 (720)
.+...++.|+.+-+.-+++....++.. ...+.+...+..|+.+.+..+++ .|...+.. .-.+.+...+..|
T Consensus 38 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~ 113 (413)
T PHA02875 38 PIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILK 113 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhC
Confidence 334444555555555555443332211 11223445566777766554443 33221111 0112233334455
Q ss_pred CchHHHHHHHHHHHcCCCCChHH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 231 DLDVGKRAHRYVKECKIVPNLIL--ENALTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 231 ~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
+. ++.+.+++.|..++... ....+...+..|+.+.+..+++.-... |...++. +...+..|+.+-+.-++
T Consensus 114 ~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll 188 (413)
T PHA02875 114 KL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP-LIIAMAKGDIAICKMLL 188 (413)
T ss_pred CH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 54 35555566676554321 223445555677777766666544332 2222222 23334456665555555
Q ss_pred hhCCC
Q 005000 306 DQMPE 310 (720)
Q Consensus 306 ~~~~~ 310 (720)
+.-..
T Consensus 189 ~~ga~ 193 (413)
T PHA02875 189 DSGAN 193 (413)
T ss_pred hCCCC
Confidence 54333
No 408
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.06 E-value=2.7e+02 Score=25.89 Aligned_cols=52 Identities=8% Similarity=0.025 Sum_probs=21.1
Q ss_pred hhhhcCCHHHHHHHHHhccCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 392 MYCKCGDVEKAQRVFREMLRKDKFT--WTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
.....|.+++|...++....++-.+ -..-...+...|+-++|..-|++.+..
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3334444444444444443332221 111123344444444444444444443
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.53 E-value=89 Score=29.00 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=36.2
Q ss_pred hcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
..++.+......+.+.+.....|++..|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555444566788888888888888888888888887776
No 410
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.27 E-value=3.7e+02 Score=27.20 Aligned_cols=97 Identities=16% Similarity=0.037 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 465 VDEGREYFADMTIQHGI---EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541 (720)
Q Consensus 465 ~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (720)
.+++.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+.-.++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 67788888887642111 445666677777778888877666666655555677788889999888889998889999
Q ss_pred HHHhcC-CCCcchHHHHHhHh
Q 005000 542 QILELD-PDNEAVYVLLCNIY 561 (720)
Q Consensus 542 ~~~~~~-p~~~~~~~~l~~~~ 561 (720)
.++.-+ ......+..+..+.
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHh
Confidence 888843 22223444454443
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.14 E-value=1.4e+02 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.3
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
.-|..++..|...|.+++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4588999999999999999999999877
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.93 E-value=1.4e+02 Score=24.64 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=23.7
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588888889999999999999988876
No 413
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.52 E-value=4.9e+02 Score=28.16 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=61.4
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
|-...-+++..+.++..+.-...+..+|..-| -+...|..++..|... .-++-..++..+++..+ .|+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44456677777777777777778888887754 4566677777777666 34455566666666653 34455566666
Q ss_pred hhhhcCCHHHHHHHHHhc
Q 005000 392 MYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~ 409 (720)
.|.+ ++.+.+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 6666 6777777777665
No 414
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.40 E-value=66 Score=31.44 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+-.++...++++.|....++.+.++|+++.-..-.+-+|.+.|...-|.+-+....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34446788889999999999999999999988888899999999999999988777543
No 415
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=6.7e+02 Score=29.54 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.1
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTS 342 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (720)
-|..|+..|...|++++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788999999999999999999988763
No 416
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=3.7e+02 Score=26.55 Aligned_cols=132 Identities=12% Similarity=0.110 Sum_probs=74.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCcHHHHHHHHH----HHHHcCCCCChhHhhH
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFT-------IVSILTACANLGALELGEWVKT----YIDKNKVKNDIFVGNA 388 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~i~~----~~~~~~~~~~~~~~~~ 388 (720)
.+-.++.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+... .|....-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445566778888888888887777665443 3445555555555443332222 2222222334556667
Q ss_pred Hhhhhhhc-CCHHHHHHHHHhccCC-----C----HHHHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCCChHH
Q 005000 389 LIDMYCKC-GDVEKAQRVFREMLRK-----D----KFTWTAMIVGLAINGHGDKSLDMFSQ----MLRASIIPDEVT 451 (720)
Q Consensus 389 li~~y~~~-g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t 451 (720)
|++.+... ..++.-..+.....+- . ...=.-+|..+.+.|.+.+|+.+... +.+..-+|+-++
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 77776543 3466666666554321 1 11223467888999999999887554 444444555444
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.95 E-value=2.6e+02 Score=30.60 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCc----------cHHHHHHHHHHHHhcCCHHHHHHHHHhC------CCCC--CHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEP----------NEAHYGCMVDLLGRAGHLNEALEVIKNM------PMKP--NSIVW 520 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p----------~~~~~~~li~~~~~~g~~~eA~~~~~~~------~~~p--~~~~~ 520 (720)
+.+...++++.+-|......+...- .+.+.-.|.+++..+|+.+-|.+++++. -..| ...+|
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred H------------------HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHhHhh-hcCChhHHHHHHHHHHhC
Q 005000 521 G------------------ALLGACRVHRDAEMAEMAAKQILELDPD-NEAVYVLLCNIYA-ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 521 ~------------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 580 (720)
+ ..+....+.|-+..|.+..+-+++++|. ||-....+++.|+ +..+|+--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 005000 581 G 581 (720)
Q Consensus 581 ~ 581 (720)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 418
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.87 E-value=47 Score=32.91 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.1
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 005000 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221 (720)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 221 (720)
-||..|..-.+.|+.++|+.++++.++.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367888888888888888888888888887654444443
No 419
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.86 E-value=5.8e+02 Score=28.53 Aligned_cols=26 Identities=4% Similarity=0.034 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHh
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDM 106 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m 106 (720)
..-|+ .+..+.-+|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45688 577777889999999988543
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.64 E-value=2.3e+02 Score=27.21 Aligned_cols=113 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHhccCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKFT--WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
.+++++|.+.+-. |.... ..-++.++...|+.+.|+.+++.+.-..-.+ .....++.+ ...+.+.+|..+-+
T Consensus 91 ~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 3555666655532 22211 1235666666777777777776643322122 122222223 44577777777665
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 005000 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSI 518 (720)
Q Consensus 474 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~ 518 (720)
.... .-....+..++..+.....-....+.+-.+++.+...
T Consensus 165 ~~~~----~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 165 SYPD----ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred hCch----hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 4321 1113455566665554433233344444556655443
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.54 E-value=1.9e+02 Score=22.82 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 005000 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302 (720)
Q Consensus 235 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 302 (720)
+.++++.+.+.|+-.+ .-...+-..-...|+.+.|.++++.++ +....+..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455666666654322 122222222235678888888888888 88888888888888888766554
No 422
>PF15161 Neuropep_like: Neuropeptide-like
Probab=39.34 E-value=11 Score=26.07 Aligned_cols=18 Identities=33% Similarity=0.759 Sum_probs=12.7
Q ss_pred cccccccccchhhhhcccc
Q 005000 675 KNLRMCVDCHRMAKLVSMV 693 (720)
Q Consensus 675 ~nl~~~~~~~~~~~~~s~~ 693 (720)
---|-|.|||.+- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4568899999765 66543
No 423
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.72 E-value=1.7e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcc----hHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQIL-------ELDPDNEA----VYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..|-.++...|+++++....++++ +++.+... +....+.++...|+.++|.+.|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3344444455555554444444443 33443322 2234455667778888888877654
No 424
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.06 E-value=2.5e+02 Score=23.75 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHH-------HHHhC-CCCCC-HHHHHHHH----HHHHhcCCHHHHHHHHHHHHhc
Q 005000 486 AHYGCMVDLLGRAGHLNEALE-------VIKNM-PMKPN-SIVWGALL----GACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~-------~~~~~-~~~p~-~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
..+..|..++.+.|++++++. +|++- .+..| ...|-+.+ .++...|+.++|...|+.+-++
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 345556666777777665444 44443 23333 44564443 4567788888888888776553
No 425
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=37.87 E-value=2.8e+02 Score=24.36 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=40.5
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhcc---------CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005000 387 NALIDMYCKCGDVEKAQRVFREML---------RKDKFTWTAMIVGLAINGH-GDKSLDMFSQMLRASIIPDEVTYVGVL 456 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 456 (720)
|.++.-...-++......+++.+. ..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444444444444444444431 1244456666666644433 234556666666666666666677777
Q ss_pred HHHHhc
Q 005000 457 SACTHT 462 (720)
Q Consensus 457 ~a~~~~ 462 (720)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666543
No 426
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.34 E-value=5.3e+02 Score=27.37 Aligned_cols=121 Identities=9% Similarity=0.035 Sum_probs=58.7
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 460 (720)
++..+-..-+...++.+..+..-.+-.-....|...-..-+.+....|. .+|...+..... .|+......+.....
T Consensus 159 ~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~la 234 (410)
T TIGR02270 159 EDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLA 234 (410)
T ss_pred CCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHH
Confidence 3344444444444444443333332223344455555555566666666 555555554332 222222222222222
Q ss_pred hcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005000 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~ 512 (720)
.. ..+++...+..+.++ +. +-...+.++++.|+..-+.-+++.|.
T Consensus 235 l~-~~~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 235 VA-GGPDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hC-CchhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 22 233555555555421 22 44456677777888777777777775
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.35 E-value=64 Score=30.55 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=50.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
..+.++.+.+.+++.+++++-|+....+..++..-.+.|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34678999999999999999999999999999999999999999999998877543
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.13 E-value=47 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=25.8
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005000 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226 (720)
Q Consensus 191 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 226 (720)
.-..|.-..|-.+|+.|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999998874 66666554
No 429
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.98 E-value=2.9e+02 Score=23.97 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
|.-+|.+.++++++.+....+++.+|+|..+..+-
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 44567777888888888888888888877665543
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.79 E-value=1.1e+02 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34568888888888888888888 7765444
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.58 E-value=1.8e+02 Score=24.82 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=33.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+.+-|++....+-+.+|++-+|+..|.++++-+...-++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 3457799999999999999999999999999987654443
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.44 E-value=69 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI 354 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 354 (720)
||..|..-.+.|+.++|+.++++..+.|+.--..||...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 678999999999999999999999999976555555443
No 433
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=35.39 E-value=6.4e+02 Score=27.74 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-cchHHHHHhH
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-EAVYVLLCNI 560 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~ 560 (720)
+..-.+|-+-+....++.-|.++-++.++. ....|.+..-+|.+.+++..|..-|++++++..+| |.....+.+.
T Consensus 556 ~~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ 631 (1141)
T KOG1811|consen 556 PAASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL 631 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh
Confidence 344566777777788888888888887664 45689999999999999999999999999986443 3344444443
No 434
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.97 E-value=79 Score=33.33 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 507 VIKNMPMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 507 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
+|....++|. ..++.+-++.+.+++++..|..+.++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444456663 4467788888999999999999999999999864
No 435
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.88 E-value=98 Score=24.59 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=16.2
Q ss_pred CCHHHHHHHHhhCCCCCccchHHHHHHHHhc
Q 005000 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRV 326 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 326 (720)
.+.+++.++++.++.+.+.+|..+..++...
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRET 78 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhc
Confidence 3445555555555555555555555555443
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.43 E-value=1.3e+02 Score=20.43 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=18.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005000 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224 (720)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 224 (720)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666665555555554443
No 437
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.21 E-value=6e+02 Score=27.01 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc---cCCCHHHHHHHH
Q 005000 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM---LRKDKFTWTAMI 421 (720)
Q Consensus 345 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li 421 (720)
..+......++..+ .|+...+..+++.+...+... ..+...+++... ..++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44445555554433 577777777766655431111 112222222221 122222344445
Q ss_pred HHHHH---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 005000 422 VGLAI---NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463 (720)
Q Consensus 422 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (720)
+++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55444 4788999999999999998887665555554544433
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.77 E-value=61 Score=23.58 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 185 NAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 185 ~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
-.+|.||.+.|++++|.+++.++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567788888888888888777654
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.52 E-value=68 Score=23.35 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
.-.+|.||.+.|++++|.++.+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578889999999999988887764
No 440
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.11 E-value=5e+02 Score=25.49 Aligned_cols=155 Identities=11% Similarity=0.046 Sum_probs=74.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCh-----HHHHHHHHHHHHhCCCCChhHHHHH
Q 005000 82 LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAV-----EFGKELHCHVLKFGFDSSVFVQNAL 156 (720)
Q Consensus 82 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l 156 (720)
-.+.+|+.+.+.+...+|+++.+.+.... -=.+++..++......... ......+..+++.- .. ...|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~--~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLP--YFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCC--CcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-Hc-CcchHHH
Confidence 35677888888888888888887775421 1122333333322111100 11111222221110 00 1123334
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC-----CHhhHHHHHHHHhcCC
Q 005000 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLP-----TSVTIVLVLSACAKLK 230 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-----~~~t~~~ll~~~~~~~ 230 (720)
+..+.|.=++..-..+|+....| ..++.-+.+.|+.+.|-.++--+...+ ... +...-..++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 44444444455555566554322 355666667777777766665554332 111 2223334455555566
Q ss_pred CchHHHHHHHHHHHc
Q 005000 231 DLDVGKRAHRYVKEC 245 (720)
Q Consensus 231 ~~~~a~~~~~~~~~~ 245 (720)
+++.+.++.+.+...
T Consensus 235 ~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 235 DWDLCFELVRFLKAL 249 (258)
T ss_pred cHHHHHHHHHHHHHh
Confidence 666666666655543
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.81 E-value=2.8e+02 Score=23.60 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 501 LNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL--ELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
++++...|... ..+.|..-....+..-.... .+..+++.+. ++.-.-+..|..-+..+...|++++|.++++.
T Consensus 49 Ler~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 49 LERCIRKFKDDERYKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 442
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=9.2e+02 Score=28.45 Aligned_cols=127 Identities=13% Similarity=0.199 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHH
Q 005000 83 WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS--VFVQNALISTY 160 (720)
Q Consensus 83 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y 160 (720)
|..|+-.|...|..++|++++.+.....-.-|.. . .+.-..+.+.+.+.+-+.. ...|...+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-~------------~~~~e~ii~YL~~l~~~~~~Li~~y~~wv--- 570 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-Q------------LDGLEKIIEYLKKLGAENLDLILEYADWV--- 570 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccc-h------------hhhHHHHHHHHHHhcccchhHHHHHhhhh---
Confidence 8889999999999999999998876521001111 1 0111124444444442211 11111111
Q ss_pred HhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 005000 161 CLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 161 ~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
-..+.+...++|-.-.. ....+-. -+-.|......+-++.+++.+....-.++..-.+.++..|.
T Consensus 571 -l~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 -LNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred -hccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12345555566543111 0111111 23356677788888888888877665666666666666654
No 443
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.16 E-value=6.7e+02 Score=26.65 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 490 CMVDLLGRAGHLNEALEVIKNMPMK--PNSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
.|+.-|.-.|...||...+++++.+ ...+++.+++.+..+.|+-+.-..+++..+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4566677777888888877776432 345666777777666666554444444433
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.96 E-value=5.8e+02 Score=25.88 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=60.1
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCC--------CHHHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCCCh----
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRK--------DKFTWTAMI-VGLAINGHGDKSLDMFSQMLRASIIPDE---- 449 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 449 (720)
....-.....|++.|+.+.|.+.+....++ |++.+..-+ --|..+.-..+-++..+.+.+.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 344556778899999999999998876443 444333322 2344444456677777777777765554
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
.+|-++ -|....++.+|-.+|-+..
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 355555 3556678888888887654
No 445
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.93 E-value=4.4e+02 Score=24.46 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---
Q 005000 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--- 379 (720)
Q Consensus 303 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--- 379 (720)
.+.++..++-.+.|-....+-++.-+.+++.+.|- ..+=.+++-.|.+.-++.+++.++..+.+..+
T Consensus 97 ~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 97 ALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444555666666666666655555444331 11223456667777778888877776654322
Q ss_pred -----------CCChhHhhHHhhhhhhcCCHHHHHHHHHhc
Q 005000 380 -----------KNDIFVGNALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 380 -----------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
.+.-.+.|.-...+.+.|.++.|..++++-
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233345566677777888888887777643
No 446
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.86 E-value=7.1e+02 Score=26.85 Aligned_cols=306 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHH
Q 005000 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287 (720)
Q Consensus 208 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 287 (720)
+..+...........-..-...+.++...+....+...|.....+.+|.-+..|.+.|....-..+=+ .+.
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~e---------l~a 79 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKE---------LEA 79 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHH---------HHH
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccC
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA-----CANLG 362 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~~ 362 (720)
+-......|+.-..+..-+. .+.+....-.|.....+..|+++....... +.|=...+...... +....
T Consensus 80 L~~~~~~~~~~~~gld~~~~-----t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~ 153 (696)
T KOG2471|consen 80 LTADADAPGDVSSGLSLKQG-----TVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETS 153 (696)
T ss_pred HHHhhccccchhcchhhhcc-----hHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHHHHc-------------------CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc--------------
Q 005000 363 ALELGEWVKTYIDKN-------------------KVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-------------- 409 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~-------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------------- 409 (720)
..+++..++..+.+. +--++...-++....-.+..-...+.+.+-.+
T Consensus 154 q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vm 233 (696)
T KOG2471|consen 154 QCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVM 233 (696)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhh
Q ss_pred --cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH--------HHHHHHHHHhcCChhhHHHHHHHHHH--
Q 005000 410 --LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT--------YVGVLSACTHTGMVDEGREYFADMTI-- 477 (720)
Q Consensus 410 --~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~~~ll~a~~~~g~~~~a~~~~~~m~~-- 477 (720)
........-.--.-+.-+|++.+|.+++...--..-.--..| ++.+.-...+.|.+.-+..+|....+
T Consensus 234 n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 234 NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Q ss_pred ----HcCCCc----------cHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 005000 478 ----QHGIEP----------NEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLGACR 528 (720)
Q Consensus 478 ----~~~~~p----------~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~ 528 (720)
..|+.| ..+......-.|...|++-.|.+.|.+. .+..++..|..|..+|.
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
No 447
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=30.10 E-value=20 Score=19.19 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.4
Q ss_pred cccchhhhhccc
Q 005000 681 VDCHRMAKLVSM 692 (720)
Q Consensus 681 ~~~~~~~~~~s~ 692 (720)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 356888888773
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.72 E-value=3.6e+02 Score=28.41 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-----------CCCccchHHHHHHHHhcCChhHHHHHHHHHH
Q 005000 286 TAIVTGYINRGQVDMARQYFDQMP-----------ERDYVLWTAMIDGYLRVNRFREALTLFREMQ 340 (720)
Q Consensus 286 ~~li~~~~~~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (720)
-.+++.++-.|++..|+++++.+. .-.+.++.-+.-+|...+++.+|++.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777776666543 2245567778888999999999999998764
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.63 E-value=4.7e+02 Score=24.44 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCM 491 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 491 (720)
.....+.++..+...|+++.|-+.|.-+++.. ..|..+. +.-|.+++.+- +-.+.. ..++.|
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~------------W~iG~eIL~~~----~~~~~~~~fl~~l 102 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSL------------WGIGAEILMRR----GEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhc------------chHHHHHHHcC----CCcchHHHHHHHH
Confidence 34567888899999999999999999998853 4444322 33334443221 111111 344455
Q ss_pred HHHHHhcCCHHHHHHHH------HhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---CcchHH
Q 005000 492 VDLLGRAGHLNEALEVI------KNMP--MKPNS---IVWGALLGACRVHRDAEMAEMAAKQILEL--DPD---NEAVYV 555 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~------~~~~--~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~---~~~~~~ 555 (720)
...|.......+..... +.-. ..|.. ..|..++..-.+....+.+.++.+++-++ .|+ +++.|.
T Consensus 103 ~~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~ 182 (199)
T PF04090_consen 103 ISFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWF 182 (199)
T ss_pred HHHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 55555433333322222 1110 11321 12344444433334455677777777765 443 555665
Q ss_pred HHHhHh
Q 005000 556 LLCNIY 561 (720)
Q Consensus 556 ~l~~~~ 561 (720)
..+.++
T Consensus 183 i~~m~~ 188 (199)
T PF04090_consen 183 IRGMCH 188 (199)
T ss_pred HHHHHH
Confidence 555443
No 450
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.35 E-value=7.1e+02 Score=26.43 Aligned_cols=163 Identities=7% Similarity=-0.039 Sum_probs=73.9
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005000 87 IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166 (720)
Q Consensus 87 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 166 (720)
|.++...| ..++..+...+... ++...+.....++....+. .+...+.... -.++..+......++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~-~~~~~L~~~L---~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDA-LDLRSVLAVL---QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCCh-HHHHHHHHHh---cCCCHHHHHHHHHHHhcCCch
Confidence 66777777 45677666666432 2333333333444322222 2222222222 235555677777777776666
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcC
Q 005000 167 DMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK 246 (720)
Q Consensus 167 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 246 (720)
+....+.......+...-.+.+.++...+. .+...+....+ .+|...-...+.+++..++.+....+ ..+..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L-~~al~-- 188 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTL-RLYLR-- 188 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHH-HHHHc--
Confidence 655555555444444444344444444331 12233333322 33444445555555555543322222 12211
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q 005000 247 IVPNLILENALTDMYAACGE 266 (720)
Q Consensus 247 ~~~~~~~~~~li~~y~~~g~ 266 (720)
.+|..+-..-+.+....|.
T Consensus 189 -d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 189 -DSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -CCCHHHHHHHHHHHHHcCC
Confidence 2344444444444455544
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.26 E-value=1.9e+02 Score=19.71 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=16.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 456 (720)
+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555566665555555555444443
No 452
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.46 E-value=1.1e+02 Score=30.35 Aligned_cols=77 Identities=8% Similarity=0.050 Sum_probs=50.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA-LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
+..|+..|.-.+.--.+.|.+.+.-.++.+. ...| |+..|-. --.-+..+++++.+..++.+.+.++|++|..+...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3345555555554444555666666666665 3344 6666744 22346788999999999999999999988776543
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.98 E-value=71 Score=33.77 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
......++++.|...+.++++++|+.+..|...+.++.+.+++..|..-..++.+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 344566789999999999999999999999999999999999999998877776654
No 454
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.34 E-value=6.2e+02 Score=25.06 Aligned_cols=76 Identities=20% Similarity=-0.024 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC-------------
Q 005000 503 EALEVIKNMPMKPNSIVWGALLGAC----RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN------------- 565 (720)
Q Consensus 503 eA~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 565 (720)
.|...+.++-..-+......+...| ....+.++|...++++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 5666666652222333333333333 223377788888888877766 44555555 444444
Q ss_pred --ChhHHHHHHHHHHhCC
Q 005000 566 --RWDNFRELRQMILDRG 581 (720)
Q Consensus 566 --~~~~a~~~~~~m~~~~ 581 (720)
+...|...+......+
T Consensus 250 ~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 250 EEDKKQALEWLQKACELG 267 (292)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 5555666665555444
No 455
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=27.29 E-value=70 Score=24.55 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHHHhcCcccCCCcc
Q 005000 610 TKEIYLKLDEMTSDLKFVGYMPDISEV 636 (720)
Q Consensus 610 ~~~~~~~l~~l~~~~~~~g~~~d~~~~ 636 (720)
..++++.+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356788888888899999999997654
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.28 E-value=7.5e+02 Score=25.99 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH--------cCCCccH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLR--ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ--------HGIEPNE 485 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--------~~~~p~~ 485 (720)
.+.-+..-|...|+.+.|++.|.+... ...+--...+..++..-...|++.....+..+.... ..+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHhcCCCCc
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNMP---------MKPNSIVWGALLGACRVHRDAEMA-----EMAAKQILELDPDNE 551 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a-----~~~~~~~~~~~p~~~ 551 (720)
..+..+..+..+ ++..|.+.|-..+ +.|..++....+.+...-++-+.- -..|+..++++|.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq-- 307 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ-- 307 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH--
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCccc
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~ 631 (720)
....+..-|. ++|....+++++++.+-+ ..--.+|+....|+++++=...--..+|.
T Consensus 308 -lr~il~~fy~--sky~~cl~~L~~~k~~ll-------------------LD~yLaphVd~Ly~~IR~r~llqy~~py~- 364 (466)
T KOG0686|consen 308 -LREILFKFYS--SKYASCLELLREIKPRLL-------------------LDMYLAPHVDNLYSLIRNRALLQYLSPYS- 364 (466)
T ss_pred -HHHHHHHHhh--hhHHHHHHHHHHhcccee-------------------echhcchhHHHHHHHHHHhhHHHhcCccc-
Q ss_pred CCCcccccCChhhhhhhhhhhHHHHHHHHH
Q 005000 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFG 661 (720)
Q Consensus 632 d~~~~~~~~~~~~~~~~~~~~~e~la~~~~ 661 (720)
.--.-+||.||+
T Consensus 365 ------------------s~~m~~mA~af~ 376 (466)
T KOG0686|consen 365 ------------------SADMSKMAEAFN 376 (466)
T ss_pred ------------------cchHHHHHHHhc
No 457
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.91 E-value=7e+02 Score=25.55 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=37.0
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS-LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+.. ..+++++... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 344444444444444444444333333344444443333322222 2233333322 666666666666665554444
Q ss_pred HHHHHHHH
Q 005000 468 GREYFADM 475 (720)
Q Consensus 468 a~~~~~~m 475 (720)
....+..+
T Consensus 249 ~~~~i~~~ 256 (340)
T PF12069_consen 249 VAILIDAL 256 (340)
T ss_pred HHHHHHHH
Confidence 44434433
No 458
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=26.21 E-value=3.3e+02 Score=21.57 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=10.8
Q ss_pred HHHHhcCChhhHHHHHHHHH
Q 005000 457 SACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~ 476 (720)
......|..++|...+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33445566666665555544
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.15 E-value=2.4e+02 Score=25.56 Aligned_cols=47 Identities=6% Similarity=-0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccC
Q 005000 83 WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI 129 (720)
Q Consensus 83 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 129 (720)
--+++..+...+.+-.|.++++.+.+.+..++..|..-.|..+...|
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444444444445555666666655555445555444444444433
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=7.1e+02 Score=25.30 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=7.8
Q ss_pred HHHHHHHHHhh
Q 005000 653 SEKLAMAFGLI 663 (720)
Q Consensus 653 ~e~la~~~~~~ 663 (720)
-|.||-+||.-
T Consensus 320 l~~MA~aFgVS 330 (393)
T KOG0687|consen 320 LESMAKAFGVS 330 (393)
T ss_pred HHHHHHHhCch
Confidence 46688888853
No 461
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.80 E-value=6.8e+02 Score=25.02 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
.+.....|..+|.+.+|.++.++. ...| +...|-.|+..+...||--.+..-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344456677777777777777776 4445 5666777777777777754454444443
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.79 E-value=6.9e+02 Score=25.11 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=17.8
Q ss_pred ChHHHHHHhccC-C-CCCcchHHHHHHHHH
Q 005000 64 DMKYACKVFRKI-P-RPSVCLWNTMIKGYS 91 (720)
Q Consensus 64 ~~~~A~~~f~~~-~-~~~~~~~n~li~~~~ 91 (720)
++..+..+...+ + +++...|..++..+.
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 567777787777 4 577778887776543
No 463
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=25.55 E-value=2e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=15.1
Q ss_pred CCHHHHHHHHhhCCCCCccchHHHHHHHHhcC
Q 005000 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 327 (720)
.+.++|..+++.++.++..+|....+++-..|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34444555555555554444444444444333
No 464
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.38 E-value=5.5e+02 Score=23.83 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=57.3
Q ss_pred hcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCC------
Q 005000 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI------ 247 (720)
Q Consensus 174 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------ 247 (720)
.....+-.+.|-.....-++.-+.+++-+.|-- ..=.+++-.|-+..++.+++++++.+-+..+
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 333344556676666666666555554443311 1223566667777788888888888766432
Q ss_pred --------CCChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 005000 248 --------VPNLILENALTDMYAACGEMGFALEIFGN 276 (720)
Q Consensus 248 --------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 276 (720)
.+--.+.|.....+.++|.++.|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22334667777777788888888777763
No 465
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=25.02 E-value=8.3e+02 Score=25.74 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=38.9
Q ss_pred CCCccchHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005000 310 ERDYVLWTAMIDGYLRV---NRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362 (720)
Q Consensus 310 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 362 (720)
+++-..+..+|+++.++ .+.+.|+-++-+|++.|-.|-...-..+.-+.-..|
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 34666777888888654 679999999999999997676666555555554444
No 466
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.94 E-value=7.5e+02 Score=25.24 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh------cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 005000 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTH------TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 503 (720)
.++++.++++....+. |........|.+|-- .-++..-..+|+.+. .+.|++.+--.-.-+++..--.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHHh
Confidence 4677788888777764 777777766665521 234555556666553 234443322222223444444566
Q ss_pred HHHHHHhCCCCC--C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 504 ALEVIKNMPMKP--N--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 504 A~~~~~~~~~~p--~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
++..++.+.-+| + ...+..-...+.+.|+.++|...|++++.+.++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 666666664332 1 223444556688899999999999999988876543
No 467
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.59 E-value=1.4e+02 Score=33.57 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=16.2
Q ss_pred cccccchhhhhcccccceeEEEecCC
Q 005000 679 MCVDCHRMAKLVSMVYDREVIVRDKT 704 (720)
Q Consensus 679 ~~~~~~~~~~~~s~~~~~~~~~~d~~ 704 (720)
-|..-|++.--.|+|-|-.+--||.|
T Consensus 490 ~~k~ih~w~F~assIk~Vs~sKrddR 515 (1226)
T KOG4279|consen 490 KLKGIHRWHFAASSIKGVSESKRDDR 515 (1226)
T ss_pred hhcCceeeeeehhceecccccccccc
Confidence 35566666666666666666666644
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.57 E-value=3.2e+02 Score=24.01 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 005000 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500 (720)
Q Consensus 439 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 500 (720)
.+.+.|+++...- ..++..+...+..-.|.++++.+. +.+..-+..|-..-++.+...|-
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~-~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELR-EEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHH-HhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555444322 224444555555566666666664 23333333333344455555553
No 469
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.51 E-value=1.4e+02 Score=19.20 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.2
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+|..|+.+-...++|+.|.+-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888888888888887776643
No 470
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.30 E-value=6.1e+02 Score=27.54 Aligned_cols=111 Identities=9% Similarity=0.002 Sum_probs=64.7
Q ss_pred chhHHhcccC-------hHHHHH-HHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC--CCcchHHHHHH
Q 005000 19 LISPIETCES-------MHQLKQ-IHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR--PSVCLWNTMIK 88 (720)
Q Consensus 19 ~~~~l~~~~~-------~~~~~~-~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~li~ 88 (720)
...+++.|.. ...... +-..+.+.|+..+......+... ..|++.+|..++++... ....++..+
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~---S~Gd~RdAL~lLeq~i~~~~~~it~~~V-- 239 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK---GDGSVRDMLSFMEQAIVFTDSKLTGVKI-- 239 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCChHHHHHHHHHHHHHhCCCCcCHHHH--
Confidence 4567777852 122222 22233345777777777666665 56899999998876310 111111111
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH
Q 005000 89 GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152 (720)
Q Consensus 89 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 152 (720)
.++. |. ++...+..+++++...+....+..+++.+++.|.+|..++
T Consensus 240 ---------------~~~l--g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 240 ---------------RKMI--GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred ---------------HHHh--CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 2222 33 3555566677766665556788888999998887766554
No 471
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.18 E-value=5.1e+02 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHh
Q 005000 82 LWNTMIKGYSRIDSHKNGVLIYLDMLK 108 (720)
Q Consensus 82 ~~n~li~~~~~~g~~~~A~~l~~~m~~ 108 (720)
.-..++.-|.+.++.++|+.++..|--
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 345677889999999999999988864
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.14 E-value=3.3e+02 Score=23.95 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=17.5
Q ss_pred HHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 005000 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265 (720)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 265 (720)
..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 28 ELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333333333444444444444444443333333334444443
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.04 E-value=4e+02 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 005000 492 VDLLGRAGHLNEALEVIKNMPMKPNSIVWGA 522 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 522 (720)
+-.|.+.|.+++|.+++++.--.|+......
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 4456777777777777777633555444433
No 474
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.64 E-value=6.7e+02 Score=24.18 Aligned_cols=160 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh--
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC-ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK-- 395 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~-- 395 (720)
++..+-+.|++++++..++++...+...+..-.+.+-.+| ...|....+..++..+....-.........++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred ----cCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCCh-----------------HHHHHHHHHHHH---CCCCCChHH
Q 005000 396 ----CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG-----------------DKSLDMFSQMLR---ASIIPDEVT 451 (720)
Q Consensus 396 ----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~A~~l~~~m~~---~g~~p~~~t 451 (720)
..--.+...+.+...-|...+-.+.+--+-..|++ +.|.+.|++... ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----hcCChhhHHHHHHHHHHH
Q 005000 452 YVGVLSACT-----HTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 452 ~~~ll~a~~-----~~g~~~~a~~~~~~m~~~ 478 (720)
+.+++--++ ..|+.++|.++-+.....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
No 475
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=23.48 E-value=4.7e+02 Score=22.35 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG-ALLGACRVHRDAEMAEMAAKQ 542 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 542 (720)
.+-.++..++.=.|..++|.++++..+-.++-...| .++..|+...+-++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455566666677777777776665444444443 455666666665555544443
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.27 E-value=2.8e+02 Score=25.08 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=36.9
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 440 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
+...|+++...-. .++......+..-.|.++++.+. +.+...+..|..--++.+.+.|-+.+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 3445666555433 34444444555667778888775 445555555555566777777765543
No 477
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.82 E-value=1.9e+03 Score=29.17 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
.+|....+.+...|.++.|...+-... +.+ .| ..+--....+-..|+-..|+.++++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~-e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAK-ESR-LP--EIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhh-hcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 355555555666666666665554443 222 22 23334455566666666666666543
No 478
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.66 E-value=1.4e+03 Score=27.71 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHhhhhhhcCCHHHHHHHHHhc
Q 005000 388 ALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~ 409 (720)
.+..+|..+|..-+|...|.+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHH
Confidence 3445688899999999998876
No 479
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=22.58 E-value=3.6e+02 Score=29.13 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CcchHHH
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--------NEAVYVL 556 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~ 556 (720)
+..|..++.-|...+++++|.++..-.+ +...|.++......+.+..-++.+|..+.+.+.- -+.--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3445566667777888888888776543 5567777777777777777777777666654321 1122223
Q ss_pred HHhHhhhcCChhHHHHHHH
Q 005000 557 LCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~ 575 (720)
++....-.|+..||.-++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 4444455677777766543
No 480
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.55 E-value=3.8e+02 Score=20.95 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=30.8
Q ss_pred hhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHH
Q 005000 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 433 (720)
+...+.+.|.++++.++.++..+|.+...++...|+..-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445678888888888888888888888888777765544
No 481
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.05 E-value=8.8e+02 Score=29.08 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
+++-|-..+.|+.+=.-.++++.++.|.. .--.+=...|+|++|.+-+.+
T Consensus 877 al~VAq~SQkDPKEYLPfL~~L~~l~~~~-----rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 877 ALMVAQQSQKDPKEYLPFLQELQKLPPLY-----RRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHHhccChHHHHHHHHHHHhCChhh-----eeeeHhhhhCCHHHHHHHHHh
Confidence 34455566777787777888877776542 122233467899998876654
No 482
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.92 E-value=6.9e+02 Score=23.68 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005000 491 MVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~ 511 (720)
+..+..|.|+.++|.+.|.++
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 334444555555555555444
No 483
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=21.76 E-value=1.8e+02 Score=30.41 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 005000 490 CMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~ 510 (720)
-|+-.|.+.++.+-|+.-..+
T Consensus 233 klv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhh
Confidence 345556666666666554433
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.55 E-value=1.3e+02 Score=24.90 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=10.5
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 005000 187 MFSGYKRVKQFDETRKLFGEM 207 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m 207 (720)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344555555555555555553
No 485
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=21.17 E-value=3.8e+02 Score=20.48 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=7.5
Q ss_pred HHHhcCChHHHHHHHhc
Q 005000 159 TYCLCGEVDMARGIFDV 175 (720)
Q Consensus 159 ~y~~~g~~~~A~~~f~~ 175 (720)
..+..|+.+-+..+++.
T Consensus 32 ~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 32 YAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHTTTHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 33344444444444443
No 486
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=20.91 E-value=2.9e+02 Score=21.17 Aligned_cols=80 Identities=10% Similarity=0.029 Sum_probs=35.5
Q ss_pred HHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHHhcCCCchHHH
Q 005000 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV---TIVLVLSACAKLKDLDVGK 236 (720)
Q Consensus 160 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~ 236 (720)
.++.|+++-...+++.....+. -+..+...+..|+. ++++.+.+.|..++.. -.+.+.. .+..|+.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~---- 72 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNL---- 72 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHH----
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCH----
Confidence 3455666666666654333332 11133344455553 4455555566655543 2222222 2333333
Q ss_pred HHHHHHHHcCCCCC
Q 005000 237 RAHRYVKECKIVPN 250 (720)
Q Consensus 237 ~~~~~~~~~g~~~~ 250 (720)
++.+.+.+.|..++
T Consensus 73 ~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHTTT-TT
T ss_pred HHHHHHHHcCCCCC
Confidence 34455555555544
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.45 E-value=2.5e+02 Score=23.20 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=30.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc
Q 005000 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL 232 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 232 (720)
++..+...+..-.|-++++.+.+.+..++..|....|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566667777777777777666777766666666655543
No 488
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.27 E-value=4.9e+02 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=11.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 005000 187 MFSGYKRVKQFDETRKLFGEME 208 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~ 208 (720)
++..|...+++++|.+.+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4445555555555555555543
No 489
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.19 E-value=4.6e+02 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
...+..+...|++..|+++..+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456666777888888887776654
No 490
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=2.3e+02 Score=32.58 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 505 LEVIKNMPMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 505 ~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
-.+|...+++|- ..+..+.++.+.+++++..|..+..+++++.|..+.+
T Consensus 1070 AaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1070 AAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 345777778874 5567888899999999999999999999999876543
Done!