Query 005000
Match_columns 720
No_of_seqs 833 out of 5032
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 12:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-43 5.4E-48 398.1 40.2 530 22-563 29-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-38 4.7E-43 357.7 37.9 478 91-580 64-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.5E-25 2.9E-29 231.3 40.7 369 189-566 7-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 9.4E-27 3.2E-31 251.1 23.1 184 314-498 27-223 (501)
5 4g26_A Pentatricopeptide repea 99.9 3.4E-27 1.2E-31 254.5 18.7 184 81-264 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 9.6E-24 3.3E-28 223.2 40.6 349 223-579 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.5E-22 2.6E-26 216.7 34.5 446 81-557 7-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.3E-21 4.3E-26 214.9 31.6 422 152-580 8-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.7E-21 1.6E-25 206.7 35.0 322 250-576 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.9E-20 9.8E-25 205.4 34.5 413 155-580 30-491 (537)
11 3fp2_A TPR repeat-containing p 99.9 3.8E-20 1.3E-24 204.4 33.9 439 80-555 25-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4.1E-24 195.6 36.1 361 182-569 27-443 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 2.3E-17 7.8E-22 171.5 34.8 303 250-580 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.2E-17 7.6E-22 171.6 32.8 324 215-565 2-354 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.1E-23 178.8 22.2 284 61-407 15-306 (449)
16 3hym_B Cell division cycle pro 99.8 1.4E-16 4.8E-21 163.5 29.7 253 313-568 56-322 (330)
17 2xm6_A Protein corresponding t 99.8 1.8E-15 6.3E-20 164.7 39.8 366 149-564 38-453 (490)
18 1fch_A Peroxisomal targeting s 99.8 2.3E-17 7.8E-22 172.5 23.4 278 295-576 38-355 (368)
19 1xi4_A Clathrin heavy chain; a 99.8 3.8E-14 1.3E-18 161.6 49.7 392 136-573 969-1377(1630)
20 2ooe_A Cleavage stimulation fa 99.8 3.1E-15 1.1E-19 164.7 38.8 208 366-579 256-491 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 4.9E-14 1.7E-18 160.6 48.8 350 184-576 988-1341(1630)
22 3hym_B Cell division cycle pro 99.8 2.8E-16 9.5E-21 161.3 28.5 264 311-579 20-298 (330)
23 1b89_A Protein (clathrin heavy 99.7 4.9E-17 1.7E-21 166.9 19.7 285 162-511 15-308 (449)
24 2xm6_A Protein corresponding t 99.7 1.5E-14 5.2E-19 157.4 40.6 335 229-581 56-433 (490)
25 4eqf_A PEX5-related protein; a 99.7 9.2E-17 3.1E-21 167.8 21.1 261 312-576 64-352 (365)
26 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.9E-19 160.1 36.5 404 139-550 3-496 (530)
27 3mkr_A Coatomer subunit epsilo 99.7 4.2E-15 1.4E-19 149.3 28.0 268 293-574 10-288 (291)
28 1fch_A Peroxisomal targeting s 99.7 1.1E-15 3.7E-20 159.7 21.9 284 323-624 35-343 (368)
29 4g1t_A Interferon-induced prot 99.7 1E-14 3.4E-19 158.1 29.7 369 181-590 51-469 (472)
30 3mkr_A Coatomer subunit epsilo 99.7 2.9E-15 1E-19 150.5 22.7 246 320-580 6-264 (291)
31 3cv0_A Peroxisome targeting si 99.7 1.9E-15 6.4E-20 154.8 21.7 259 314-577 22-312 (327)
32 4eqf_A PEX5-related protein; a 99.7 9.8E-16 3.4E-20 160.0 19.2 230 348-580 65-310 (365)
33 3spa_A Mtrpol, DNA-directed RN 99.6 1.5E-16 5E-21 175.8 6.9 149 148-296 125-286 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 3.8E-16 1.3E-20 172.5 10.0 131 380-511 124-262 (1134)
35 3cv0_A Peroxisome targeting si 99.6 1.3E-14 4.3E-19 148.6 19.5 263 253-548 23-317 (327)
36 4g1t_A Interferon-induced prot 99.6 5.1E-14 1.7E-18 152.5 24.0 235 295-558 226-471 (472)
37 2pl2_A Hypothetical conserved 99.6 1.2E-13 4E-18 132.4 20.7 193 380-577 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 1.9E-13 6.6E-18 134.4 22.5 210 358-580 15-236 (258)
39 3uq3_A Heat shock protein STI1 99.5 2.3E-13 7.8E-18 133.9 18.9 235 315-560 7-256 (258)
40 3e4b_A ALGK; tetratricopeptide 99.5 2E-12 6.8E-17 138.6 26.2 376 121-579 9-420 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.3E-13 1.8E-17 132.8 19.6 241 325-574 17-269 (275)
42 3u4t_A TPR repeat-containing p 99.5 9.4E-13 3.2E-17 130.8 21.0 244 285-565 6-269 (272)
43 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.5E-16 121.6 27.5 223 312-581 5-252 (273)
44 2ho1_A Type 4 fimbrial biogene 99.5 4.1E-12 1.4E-16 124.6 22.2 197 383-581 37-239 (252)
45 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-12 1.1E-16 136.9 22.3 332 229-582 16-389 (452)
46 2vq2_A PILW, putative fimbrial 99.5 7.1E-12 2.4E-16 120.2 22.3 197 382-580 7-211 (225)
47 1ouv_A Conserved hypothetical 99.5 2E-11 6.8E-16 121.4 25.8 226 281-551 5-256 (273)
48 2q7f_A YRRB protein; TPR, prot 99.4 2.2E-12 7.5E-17 125.6 17.9 196 382-580 22-222 (243)
49 2h6f_A Protein farnesyltransfe 99.4 1.1E-11 3.7E-16 128.8 23.6 243 314-563 98-365 (382)
50 3u4t_A TPR repeat-containing p 99.4 2.6E-11 8.8E-16 120.3 25.2 239 251-527 3-265 (272)
51 2q7f_A YRRB protein; TPR, prot 99.4 3.9E-12 1.3E-16 123.8 18.5 215 312-565 22-241 (243)
52 2ho1_A Type 4 fimbrial biogene 99.4 2.9E-11 9.9E-16 118.5 24.4 206 313-556 37-248 (252)
53 4a1s_A PINS, partner of inscut 99.4 1.6E-12 5.5E-17 137.8 16.4 263 317-580 52-372 (411)
54 3sf4_A G-protein-signaling mod 99.4 4.2E-12 1.4E-16 134.1 19.1 264 315-579 11-335 (406)
55 2vq2_A PILW, putative fimbrial 99.4 4.3E-11 1.5E-15 114.7 24.1 208 312-557 7-222 (225)
56 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.6E-16 114.5 19.8 165 413-581 4-171 (184)
57 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5E-16 127.8 21.5 225 349-579 98-347 (382)
58 3ro2_A PINS homolog, G-protein 99.4 5.5E-12 1.9E-16 129.0 18.3 262 318-580 10-332 (338)
59 4e6h_A MRNA 3'-END-processing 99.4 8.4E-10 2.9E-14 122.3 36.6 433 95-551 47-575 (679)
60 2pl2_A Hypothetical conserved 99.4 2.5E-11 8.7E-16 116.0 21.3 192 313-510 5-210 (217)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 9E-12 3.1E-16 123.8 18.2 237 94-335 19-268 (275)
62 3sf4_A G-protein-signaling mod 99.4 2.9E-11 1E-15 127.5 23.2 294 220-568 13-364 (406)
63 4abn_A Tetratricopeptide repea 99.4 5.9E-12 2E-16 135.9 17.0 207 365-576 85-317 (474)
64 3vtx_A MAMA; tetratricopeptide 99.3 6.2E-11 2.1E-15 109.9 17.8 167 382-551 4-175 (184)
65 4gyw_A UDP-N-acetylglucosamine 99.3 3.9E-11 1.3E-15 134.6 18.8 162 413-579 8-173 (723)
66 4a1s_A PINS, partner of inscut 99.3 1.1E-10 3.6E-15 123.7 20.6 269 225-549 57-375 (411)
67 2ond_A Cleavage stimulation fa 99.3 1.2E-09 4.1E-14 110.6 27.3 219 330-552 33-276 (308)
68 3nf1_A KLC 1, kinesin light ch 99.3 6.3E-11 2.2E-15 119.9 16.0 233 347-579 26-306 (311)
69 3ro2_A PINS homolog, G-protein 99.3 2.4E-10 8.3E-15 116.7 20.5 134 416-549 185-335 (338)
70 3nf1_A KLC 1, kinesin light ch 99.2 2.9E-11 1E-15 122.4 12.6 235 315-549 29-310 (311)
71 4i17_A Hypothetical protein; T 99.2 2.1E-10 7.1E-15 110.5 17.9 188 383-579 7-208 (228)
72 4i17_A Hypothetical protein; T 99.2 5.1E-10 1.7E-14 107.8 20.0 205 346-562 5-225 (228)
73 4abn_A Tetratricopeptide repea 99.2 2E-10 6.8E-15 123.8 18.8 178 398-580 83-287 (474)
74 3ulq_A Response regulator aspa 99.2 4.3E-10 1.5E-14 117.8 21.0 221 358-579 113-367 (383)
75 1hz4_A MALT regulatory protein 99.2 4.7E-09 1.6E-13 109.4 28.7 262 318-579 19-321 (373)
76 3as5_A MAMA; tetratricopeptide 99.2 3.1E-10 1.1E-14 104.8 17.6 162 416-580 10-173 (186)
77 3ulq_A Response regulator aspa 99.2 2.8E-09 9.5E-14 111.6 26.5 165 384-548 185-370 (383)
78 2ond_A Cleavage stimulation fa 99.2 1.5E-09 5.1E-14 109.9 22.9 212 365-581 33-271 (308)
79 4e6h_A MRNA 3'-END-processing 99.2 2.4E-08 8.2E-13 110.7 33.8 430 135-581 52-571 (679)
80 3q15_A PSP28, response regulat 99.2 3E-09 1E-13 111.2 23.3 162 416-578 184-363 (378)
81 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.9E-14 100.2 17.9 169 383-554 8-181 (186)
82 3edt_B KLC 2, kinesin light ch 99.1 1.4E-09 4.8E-14 108.0 16.0 220 360-579 13-280 (283)
83 3q15_A PSP28, response regulat 99.0 4.8E-09 1.6E-13 109.6 18.2 300 247-547 6-366 (378)
84 1hz4_A MALT regulatory protein 99.0 1.2E-07 4.1E-12 98.6 28.7 228 189-440 22-279 (373)
85 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 98.3 20.9 205 382-626 14-247 (261)
86 4gyw_A UDP-N-acetylglucosamine 99.0 4.6E-09 1.6E-13 117.9 16.1 164 381-549 7-177 (723)
87 1qqe_A Vesicular transport pro 99.0 5.2E-09 1.8E-13 104.9 14.4 200 363-577 32-266 (292)
88 1qqe_A Vesicular transport pro 99.0 9.3E-09 3.2E-13 103.1 15.8 169 385-553 79-276 (292)
89 2yhc_A BAMD, UPF0169 lipoprote 99.0 5.2E-08 1.8E-12 93.4 20.1 179 384-582 5-215 (225)
90 3qky_A Outer membrane assembly 98.9 1.6E-08 5.5E-13 99.5 16.7 203 346-570 13-251 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 7.1E-08 2.4E-12 94.9 20.3 173 402-579 85-281 (310)
92 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-09 4.7E-14 97.0 6.5 136 427-566 10-149 (150)
93 2fo7_A Synthetic consensus TPR 98.9 3E-08 1E-12 85.6 14.8 122 456-579 8-131 (136)
94 3edt_B KLC 2, kinesin light ch 98.9 4.3E-08 1.5E-12 97.1 17.9 198 350-547 45-282 (283)
95 3qou_A Protein YBBN; thioredox 98.9 2.3E-08 7.7E-13 99.9 15.7 177 397-578 100-282 (287)
96 2pzi_A Probable serine/threoni 98.9 8.7E-09 3E-13 116.2 14.1 167 394-566 402-583 (681)
97 4ga2_A E3 SUMO-protein ligase 98.9 4E-09 1.4E-13 93.9 8.2 121 456-579 4-128 (150)
98 2fo7_A Synthetic consensus TPR 98.9 7E-08 2.4E-12 83.3 16.0 131 416-549 3-135 (136)
99 3mv2_B Coatomer subunit epsilo 98.9 2.6E-07 8.9E-12 91.0 21.3 180 367-554 85-290 (310)
100 2uy1_A Cleavage stimulation fa 98.8 2.5E-06 8.5E-11 91.7 30.0 371 128-545 7-412 (493)
101 3rjv_A Putative SEL1 repeat pr 98.8 2.2E-07 7.5E-12 88.0 19.1 172 402-582 5-199 (212)
102 3gyz_A Chaperone protein IPGC; 98.8 2.1E-08 7.2E-13 88.9 10.9 102 480-581 30-134 (151)
103 2r5s_A Uncharacterized protein 98.8 2.9E-08 9.7E-13 91.1 11.2 157 386-579 9-172 (176)
104 4gco_A Protein STI-1; structur 98.8 6.1E-08 2.1E-12 83.2 12.5 94 486-579 14-109 (126)
105 2vsy_A XCC0866; transferase, g 98.8 6.8E-08 2.3E-12 106.8 15.3 159 396-558 2-169 (568)
106 2pzi_A Probable serine/threoni 98.7 2.9E-07 1E-11 103.7 20.0 190 359-554 402-610 (681)
107 2vgx_A Chaperone SYCD; alterna 98.7 4.3E-08 1.5E-12 86.9 10.1 101 480-580 15-118 (148)
108 2ifu_A Gamma-SNAP; membrane fu 98.7 4.9E-07 1.7E-11 91.2 19.0 221 325-573 3-254 (307)
109 4gco_A Protein STI-1; structur 98.7 1.2E-07 4E-12 81.4 12.3 115 445-561 8-125 (126)
110 2qfc_A PLCR protein; TPR, HTH, 98.7 6E-07 2E-11 89.8 18.9 165 415-579 76-265 (293)
111 2vsy_A XCC0866; transferase, g 98.7 2E-07 6.9E-12 103.0 16.8 146 362-511 3-154 (568)
112 3u3w_A Transcriptional activat 98.7 1.3E-06 4.4E-11 87.4 20.6 160 420-579 81-265 (293)
113 3urz_A Uncharacterized protein 98.7 4.1E-07 1.4E-11 85.8 16.0 155 390-550 11-190 (208)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.7E-07 1.3E-11 86.3 15.2 125 452-581 9-151 (213)
115 2uy1_A Cleavage stimulation fa 98.6 3.6E-06 1.2E-10 90.4 23.5 124 315-442 288-412 (493)
116 2xcb_A PCRH, regulatory protei 98.6 3E-07 1E-11 80.7 12.5 96 485-580 18-115 (142)
117 3dra_A Protein farnesyltransfe 98.6 5E-06 1.7E-10 82.7 22.5 192 385-579 69-286 (306)
118 2yhc_A BAMD, UPF0169 lipoprote 98.6 8.4E-07 2.9E-11 84.9 15.9 185 348-553 4-220 (225)
119 3upv_A Heat shock protein STI1 98.6 3.5E-07 1.2E-11 78.3 11.3 96 485-580 4-101 (126)
120 2r5s_A Uncharacterized protein 98.6 7.4E-07 2.5E-11 81.5 14.1 154 351-510 9-169 (176)
121 2ifu_A Gamma-SNAP; membrane fu 98.6 4.1E-07 1.4E-11 91.7 13.1 197 360-578 3-222 (307)
122 1p5q_A FKBP52, FK506-binding p 98.6 4.7E-07 1.6E-11 92.5 13.3 145 413-579 146-293 (336)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.1E-06 7.3E-11 81.0 16.4 143 388-550 11-154 (213)
124 1a17_A Serine/threonine protei 98.5 1.2E-06 4.2E-11 78.7 14.1 127 451-579 15-145 (166)
125 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.4E-11 73.9 13.3 114 450-565 10-125 (125)
126 2vyi_A SGTA protein; chaperone 98.5 1.2E-06 4E-11 74.9 12.6 117 450-568 13-131 (131)
127 2lni_A Stress-induced-phosphop 98.5 1.3E-06 4.4E-11 75.1 12.7 114 450-566 17-133 (133)
128 3dra_A Protein farnesyltransfe 98.5 4E-05 1.4E-09 76.1 25.0 228 327-560 47-302 (306)
129 3urz_A Uncharacterized protein 98.5 2.9E-06 9.9E-11 79.9 16.0 183 318-525 9-198 (208)
130 3u3w_A Transcriptional activat 98.5 1.9E-05 6.4E-10 78.8 22.9 202 336-546 34-266 (293)
131 3rjv_A Putative SEL1 repeat pr 98.5 8.1E-06 2.8E-10 77.1 19.0 156 312-476 17-195 (212)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 3.8E-06 1.3E-10 84.0 17.5 162 385-546 77-266 (293)
133 2c2l_A CHIP, carboxy terminus 98.5 5.5E-07 1.9E-11 89.4 11.1 191 382-580 3-199 (281)
134 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 80.5 12.1 120 460-581 21-145 (177)
135 3qou_A Protein YBBN; thioredox 98.5 4E-06 1.4E-10 83.5 17.1 152 389-544 123-282 (287)
136 1hxi_A PEX5, peroxisome target 98.5 4.5E-07 1.5E-11 77.0 8.8 93 488-580 20-114 (121)
137 3sz7_A HSC70 cochaperone (SGT) 98.4 9.7E-07 3.3E-11 79.6 10.4 95 485-579 11-107 (164)
138 4gcn_A Protein STI-1; structur 98.4 8E-07 2.7E-11 76.2 9.3 94 486-579 9-111 (127)
139 3gyz_A Chaperone protein IPGC; 98.4 2E-06 7E-11 76.0 11.6 105 445-551 31-138 (151)
140 3q49_B STIP1 homology and U bo 98.4 2.9E-06 9.7E-11 73.6 11.9 98 483-580 7-106 (137)
141 2kck_A TPR repeat; tetratricop 98.4 1.8E-06 6.2E-11 71.5 10.0 97 485-581 6-107 (112)
142 4f3v_A ESX-1 secretion system 98.4 5.5E-06 1.9E-10 80.4 14.5 181 395-580 18-237 (282)
143 3gw4_A Uncharacterized protein 98.4 5.4E-06 1.9E-10 77.3 14.3 93 487-579 68-175 (203)
144 2lni_A Stress-induced-phosphop 98.4 2.9E-06 1E-10 72.8 11.4 99 482-580 13-113 (133)
145 2fbn_A 70 kDa peptidylprolyl i 98.3 2.5E-06 8.7E-11 79.5 11.6 170 390-580 11-186 (198)
146 1wao_1 Serine/threonine protei 98.3 1.5E-06 5.2E-11 93.2 11.4 118 457-576 14-135 (477)
147 2vgx_A Chaperone SYCD; alterna 98.3 7.3E-07 2.5E-11 78.8 7.3 108 446-555 17-127 (148)
148 3gw4_A Uncharacterized protein 98.3 4.7E-06 1.6E-10 77.8 13.3 153 395-547 4-177 (203)
149 4f3v_A ESX-1 secretion system 98.3 3.9E-06 1.3E-10 81.5 12.8 138 418-560 106-250 (282)
150 2e2e_A Formate-dependent nitri 98.3 4.6E-06 1.6E-10 76.1 12.8 127 426-555 22-153 (177)
151 2hr2_A Hypothetical protein; a 98.3 1.5E-06 5.1E-11 76.1 8.8 92 488-579 14-130 (159)
152 1elw_A TPR1-domain of HOP; HOP 98.3 4.2E-06 1.4E-10 69.9 11.5 93 487-579 6-100 (118)
153 3rkv_A Putative peptidylprolyl 98.3 2.9E-06 9.9E-11 76.2 10.9 63 517-579 63-125 (162)
154 1na0_A Designed protein CTPR3; 98.3 4.3E-06 1.5E-10 70.6 11.4 96 485-580 9-106 (125)
155 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4E-10 70.5 14.1 111 450-563 29-145 (148)
156 2dba_A Smooth muscle cell asso 98.3 6.2E-06 2.1E-10 72.3 12.2 98 483-580 26-128 (148)
157 1elw_A TPR1-domain of HOP; HOP 98.3 9.8E-06 3.4E-10 67.6 12.9 110 450-561 5-116 (118)
158 2vyi_A SGTA protein; chaperone 98.3 1E-05 3.4E-10 69.0 13.2 97 484-580 11-109 (131)
159 2xcb_A PCRH, regulatory protei 98.3 3.3E-06 1.1E-10 73.9 9.9 108 451-560 20-129 (142)
160 3upv_A Heat shock protein STI1 98.3 5.2E-06 1.8E-10 70.8 10.7 109 451-561 6-122 (126)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 7.3E-06 2.5E-10 73.7 11.8 107 450-558 12-120 (164)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-05 3.4E-10 86.4 14.1 162 396-579 247-414 (457)
163 3q7a_A Farnesyltransferase alp 98.2 9.7E-05 3.3E-09 74.1 19.6 193 384-579 89-330 (349)
164 1a17_A Serine/threonine protei 98.2 4.3E-05 1.5E-09 68.3 15.3 129 415-546 14-146 (166)
165 1p5q_A FKBP52, FK506-binding p 98.1 1.2E-05 4E-10 82.1 12.2 97 484-580 146-259 (336)
166 3k9i_A BH0479 protein; putativ 98.1 1.7E-06 5.8E-11 72.9 4.9 82 498-579 3-89 (117)
167 3q49_B STIP1 homology and U bo 98.1 1.2E-05 4.1E-10 69.5 10.5 100 448-549 8-109 (137)
168 2xev_A YBGF; tetratricopeptide 98.1 8.3E-06 2.8E-10 69.7 9.1 89 491-579 8-104 (129)
169 2c2l_A CHIP, carboxy terminus 98.1 1.3E-05 4.5E-10 79.4 11.2 106 448-555 3-110 (281)
170 2fbn_A 70 kDa peptidylprolyl i 98.1 4.1E-05 1.4E-09 71.2 14.1 95 485-579 38-150 (198)
171 1ihg_A Cyclophilin 40; ppiase 98.1 2.1E-05 7.4E-10 81.1 13.2 138 414-573 223-363 (370)
172 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.1E-10 68.5 9.2 96 485-580 4-108 (131)
173 3q7a_A Farnesyltransferase alp 98.1 0.0011 3.9E-08 66.4 24.6 231 322-558 63-344 (349)
174 3dss_A Geranylgeranyl transfer 98.1 0.00073 2.5E-08 67.5 22.9 117 324-443 40-174 (331)
175 4b4t_Q 26S proteasome regulato 98.1 3.3E-05 1.1E-09 81.7 14.3 164 416-579 57-244 (434)
176 1wao_1 Serine/threonine protei 98.1 1.8E-05 6.1E-10 84.9 11.9 120 386-509 9-134 (477)
177 2hr2_A Hypothetical protein; a 98.1 6.9E-06 2.4E-10 71.9 7.0 72 487-558 59-143 (159)
178 3ro3_A PINS homolog, G-protein 98.1 2.9E-05 9.8E-10 68.9 11.5 93 487-579 51-157 (164)
179 3dss_A Geranylgeranyl transfer 98.0 0.00087 3E-08 66.9 22.9 211 365-579 47-303 (331)
180 1hxi_A PEX5, peroxisome target 98.0 2.4E-05 8.1E-10 66.2 10.0 98 452-551 20-119 (121)
181 1elr_A TPR2A-domain of HOP; HO 98.0 1.7E-05 5.8E-10 67.5 9.1 109 452-563 7-124 (131)
182 3k9i_A BH0479 protein; putativ 98.0 9.3E-06 3.2E-10 68.2 7.1 94 461-555 2-99 (117)
183 3rkv_A Putative peptidylprolyl 98.0 2.3E-05 7.8E-10 70.2 10.1 80 484-563 62-144 (162)
184 2if4_A ATFKBP42; FKBP-like, al 98.0 7.2E-06 2.5E-10 83.7 7.5 147 414-580 179-328 (338)
185 1dce_A Protein (RAB geranylger 98.0 0.00033 1.1E-08 76.4 20.5 170 397-569 43-244 (567)
186 2kck_A TPR repeat; tetratricop 98.0 3.2E-05 1.1E-09 63.7 9.6 100 450-551 7-111 (112)
187 2l6j_A TPR repeat-containing p 98.0 1.4E-05 4.6E-10 66.1 7.0 92 484-575 3-102 (111)
188 1ihg_A Cyclophilin 40; ppiase 97.9 4.4E-05 1.5E-09 78.7 12.0 112 450-580 224-336 (370)
189 2xev_A YBGF; tetratricopeptide 97.9 0.00014 4.7E-09 61.8 13.2 104 455-558 8-117 (129)
190 3ro3_A PINS homolog, G-protein 97.9 6.5E-05 2.2E-09 66.5 11.5 131 417-547 12-159 (164)
191 4gcn_A Protein STI-1; structur 97.9 0.00016 5.4E-09 61.6 12.8 59 416-476 10-69 (127)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.3E-05 1.5E-09 81.5 11.0 95 486-580 269-380 (457)
193 3n71_A Histone lysine methyltr 97.9 3.9E-05 1.3E-09 81.7 10.3 128 459-586 319-470 (490)
194 1na3_A Designed protein CTPR2; 97.8 7.8E-05 2.7E-09 58.8 9.1 82 484-565 8-91 (91)
195 2kat_A Uncharacterized protein 97.8 3.8E-05 1.3E-09 64.1 7.5 78 503-580 3-82 (115)
196 2if4_A ATFKBP42; FKBP-like, al 97.8 4.9E-05 1.7E-09 77.5 9.8 152 383-551 179-333 (338)
197 4b4t_Q 26S proteasome regulato 97.8 0.00021 7.1E-09 75.5 15.1 157 423-579 13-203 (434)
198 3ma5_A Tetratricopeptide repea 97.8 6.8E-05 2.3E-09 60.8 8.7 65 516-580 6-70 (100)
199 1zu2_A Mitochondrial import re 97.8 1.1E-05 3.8E-10 70.4 3.8 86 496-581 13-121 (158)
200 3n71_A Histone lysine methyltr 97.5 0.00015 5.1E-09 77.2 7.9 115 494-626 318-450 (490)
201 2l6j_A TPR repeat-containing p 97.5 0.00032 1.1E-08 57.5 7.8 66 515-580 2-67 (111)
202 3qwp_A SET and MYND domain-con 97.5 0.00029 1E-08 73.8 9.2 116 492-625 294-427 (429)
203 3bee_A Putative YFRE protein; 97.4 0.0006 2.1E-08 54.0 8.4 68 515-582 4-74 (93)
204 1dce_A Protein (RAB geranylger 97.4 0.0028 9.7E-08 69.0 16.5 148 428-579 43-220 (567)
205 1klx_A Cysteine rich protein B 97.4 0.0012 4.1E-08 57.0 10.9 115 428-581 9-127 (138)
206 1zu2_A Mitochondrial import re 97.4 0.0002 6.8E-09 62.5 5.6 51 501-551 62-125 (158)
207 2kat_A Uncharacterized protein 97.3 0.00058 2E-08 56.7 8.0 80 467-549 3-85 (115)
208 1na3_A Designed protein CTPR2; 97.2 0.00083 2.8E-08 52.6 7.5 65 516-580 8-72 (91)
209 3qww_A SET and MYND domain-con 97.1 0.00031 1.1E-08 73.5 5.0 103 498-618 311-431 (433)
210 1klx_A Cysteine rich protein B 97.1 0.0054 1.8E-07 52.8 12.1 108 395-511 7-123 (138)
211 1pc2_A Mitochondria fission pr 97.1 0.0028 9.5E-08 54.6 9.8 90 515-630 30-124 (152)
212 3ly7_A Transcriptional activat 97.0 0.0084 2.9E-07 60.0 13.5 63 516-579 276-338 (372)
213 2kc7_A BFR218_protein; tetratr 96.9 0.0027 9.2E-08 50.7 8.0 64 491-554 6-72 (99)
214 3qww_A SET and MYND domain-con 96.9 0.005 1.7E-07 64.3 11.3 69 486-554 341-424 (433)
215 2kc7_A BFR218_protein; tetratr 96.8 0.0027 9.1E-08 50.7 6.8 59 523-581 6-65 (99)
216 3ma5_A Tetratricopeptide repea 96.7 0.0073 2.5E-07 48.4 9.1 63 413-476 6-68 (100)
217 3qwp_A SET and MYND domain-con 96.6 0.011 3.9E-07 61.6 12.0 70 486-555 330-414 (429)
218 3mkq_A Coatomer beta'-subunit; 96.5 0.097 3.3E-06 59.9 20.3 130 255-409 633-762 (814)
219 3lvg_A Clathrin heavy chain 1; 96.5 6.7E-05 2.3E-09 76.3 -5.7 447 63-573 39-534 (624)
220 1wy6_A Hypothetical protein ST 96.5 0.044 1.5E-06 45.2 11.5 139 426-583 19-157 (172)
221 3u64_A Protein TP_0956; tetrat 96.4 0.012 4E-07 56.5 9.2 87 501-587 179-276 (301)
222 3ly7_A Transcriptional activat 96.4 0.036 1.2E-06 55.5 13.2 144 411-557 191-349 (372)
223 3bee_A Putative YFRE protein; 96.1 0.03 1E-06 44.1 8.8 69 482-550 3-76 (93)
224 2v5f_A Prolyl 4-hydroxylase su 96.0 0.038 1.3E-06 44.5 9.4 73 486-558 6-87 (104)
225 3mkq_A Coatomer beta'-subunit; 96.0 0.14 4.9E-06 58.5 17.7 46 393-440 662-707 (814)
226 1nzn_A CGI-135 protein, fissio 95.7 0.041 1.4E-06 45.5 8.3 65 515-579 33-102 (126)
227 3lvg_A Clathrin heavy chain 1; 95.6 0.0022 7.6E-08 65.4 0.4 238 47-303 53-325 (624)
228 1pc2_A Mitochondria fission pr 95.6 0.049 1.7E-06 46.8 8.5 73 483-555 30-109 (152)
229 3mkq_B Coatomer subunit alpha; 95.2 0.6 2.1E-05 41.1 14.5 130 390-543 12-141 (177)
230 1y8m_A FIS1; mitochondria, unk 95.1 0.56 1.9E-05 39.4 13.2 91 514-630 36-130 (144)
231 3mkq_B Coatomer subunit alpha; 94.0 2.3 8E-05 37.4 15.2 47 259-307 13-59 (177)
232 2v5f_A Prolyl 4-hydroxylase su 93.9 0.19 6.6E-06 40.3 7.8 64 516-579 4-74 (104)
233 1nzn_A CGI-135 protein, fissio 93.3 0.66 2.3E-05 38.2 9.8 74 483-556 33-113 (126)
234 4gns_B Protein CSD3, chitin bi 93.0 0.29 9.9E-06 54.2 9.5 55 524-578 344-398 (754)
235 3o48_A Mitochondria fission 1 92.9 0.47 1.6E-05 39.3 8.3 65 515-579 38-106 (134)
236 3u64_A Protein TP_0956; tetrat 92.6 0.26 8.9E-06 47.3 7.4 81 466-549 180-272 (301)
237 1wy6_A Hypothetical protein ST 92.1 4.5 0.00016 33.5 14.7 138 228-380 19-157 (172)
238 3lpz_A GET4 (YOR164C homolog); 91.9 10 0.00035 37.2 19.7 113 152-275 37-160 (336)
239 2wpv_A GET4, UPF0363 protein Y 91.8 10 0.00035 36.9 18.8 131 152-293 35-176 (312)
240 4h7y_A Dual specificity protei 91.7 5.3 0.00018 33.9 13.3 98 410-510 9-119 (161)
241 1qsa_A Protein (soluble lytic 91.5 18 0.0006 39.2 23.6 114 428-545 228-347 (618)
242 2p58_C Putative type III secre 88.9 4.5 0.00015 31.3 9.5 58 291-351 49-106 (116)
243 2uwj_G Type III export protein 88.5 4.2 0.00014 31.4 9.1 59 290-351 47-105 (115)
244 4h7y_A Dual specificity protei 88.5 0.71 2.4E-05 39.1 5.5 51 531-581 74-124 (161)
245 4ady_A RPN2, 26S proteasome re 88.3 25 0.00085 39.9 19.3 149 323-476 500-656 (963)
246 4ady_A RPN2, 26S proteasome re 86.6 48 0.0017 37.6 30.5 215 291-511 383-620 (963)
247 3ffl_A Anaphase-promoting comp 86.0 5 0.00017 34.7 9.5 30 485-514 122-151 (167)
248 3txn_A 26S proteasome regulato 82.3 38 0.0013 34.2 15.9 57 455-511 105-165 (394)
249 1v54_E Cytochrome C oxidase po 82.1 6.8 0.00023 30.5 7.7 63 429-493 25-87 (109)
250 3o48_A Mitochondria fission 1 81.8 9.3 0.00032 31.6 9.1 37 518-554 79-115 (134)
251 2ff4_A Probable regulatory pro 81.1 3.6 0.00012 42.0 8.0 58 522-579 176-233 (388)
252 3ffl_A Anaphase-promoting comp 80.5 4.5 0.00015 35.0 7.1 121 443-577 12-148 (167)
253 1y8m_A FIS1; mitochondria, unk 80.1 25 0.00086 29.4 11.9 36 519-554 79-114 (144)
254 3lpz_A GET4 (YOR164C homolog); 79.3 50 0.0017 32.4 23.8 179 261-476 22-214 (336)
255 4gns_B Protein CSD3, chitin bi 79.1 5.5 0.00019 44.1 9.1 51 259-309 345-398 (754)
256 1v54_E Cytochrome C oxidase po 79.1 10 0.00034 29.6 7.7 48 510-557 38-85 (109)
257 2wpv_A GET4, UPF0363 protein Y 78.3 52 0.0018 31.9 24.0 180 261-477 23-216 (312)
258 2uwj_G Type III export protein 77.8 14 0.00049 28.5 8.1 86 129-219 20-105 (115)
259 2ff4_A Probable regulatory pro 77.4 16 0.00055 37.1 11.6 70 418-488 175-248 (388)
260 4b4t_P 26S proteasome regulato 76.7 73 0.0025 32.8 17.9 185 326-511 29-244 (445)
261 4fhn_B Nucleoporin NUP120; pro 76.5 17 0.00059 42.9 13.0 123 455-583 818-970 (1139)
262 2qx5_A Nucleoporin NIC96; mRNA 75.5 38 0.0013 36.8 14.2 32 485-516 533-569 (661)
263 1zbp_A Hypothetical protein VP 74.9 19 0.00066 33.9 10.2 124 423-552 6-135 (273)
264 1qsa_A Protein (soluble lytic 73.5 1.1E+02 0.0036 33.2 35.4 378 152-571 74-470 (618)
265 4fhn_B Nucleoporin NUP120; pro 72.5 76 0.0026 37.4 17.2 141 354-502 818-988 (1139)
266 2y69_E Cytochrome C oxidase su 72.1 16 0.00056 30.1 7.7 61 431-493 70-130 (152)
267 2p58_C Putative type III secre 71.1 34 0.0012 26.5 10.0 80 230-313 21-100 (116)
268 3ltm_A Alpha-REP4; protein eng 70.9 58 0.002 29.1 17.8 18 148-165 31-48 (211)
269 3ltm_A Alpha-REP4; protein eng 68.0 67 0.0023 28.6 17.2 17 448-464 156-172 (211)
270 1n11_A Ankyrin; clathrin, BAND 67.3 93 0.0032 31.6 15.0 17 60-76 22-38 (437)
271 2y69_E Cytochrome C oxidase su 66.0 27 0.00092 28.9 7.7 50 508-557 79-128 (152)
272 1zbp_A Hypothetical protein VP 65.7 11 0.00038 35.5 6.4 54 496-549 8-63 (273)
273 3mv2_A Coatomer subunit alpha; 62.2 69 0.0024 31.0 11.2 61 507-581 195-257 (325)
274 1wdy_A 2-5A-dependent ribonucl 61.3 87 0.003 29.2 12.5 111 59-178 12-130 (285)
275 3ltj_A Alpharep-4; protein eng 58.8 95 0.0032 27.3 17.3 60 382-442 120-179 (201)
276 2qx5_A Nucleoporin NIC96; mRNA 58.3 1E+02 0.0036 33.4 13.3 84 319-413 300-386 (661)
277 4b4t_P 26S proteasome regulato 57.9 1.7E+02 0.0059 30.0 24.6 173 296-472 30-241 (445)
278 4b4t_R RPN7, 26S proteasome re 56.3 28 0.00097 35.7 8.3 96 451-546 133-237 (429)
279 3txn_A 26S proteasome regulato 56.2 1.7E+02 0.0058 29.4 21.4 286 254-582 22-345 (394)
280 1wdy_A 2-5A-dependent ribonucl 56.0 86 0.0029 29.2 11.5 57 154-215 6-66 (285)
281 3esl_A Checkpoint serine/threo 55.5 92 0.0031 27.8 10.1 79 504-583 63-147 (202)
282 3kea_A K1L; tropism, ANK repea 55.4 75 0.0025 30.1 10.8 50 155-204 131-181 (285)
283 4b4t_R RPN7, 26S proteasome re 54.9 71 0.0024 32.7 11.1 56 385-440 133-194 (429)
284 3ltj_A Alpharep-4; protein eng 52.8 1.2E+02 0.0041 26.6 17.3 39 318-360 157-195 (201)
285 3eu9_A Huntingtin-interacting 51.0 89 0.003 28.1 10.3 15 60-74 17-31 (240)
286 3kea_A K1L; tropism, ANK repea 50.2 1.1E+02 0.0037 28.9 11.1 21 156-176 65-85 (285)
287 3eu9_A Huntingtin-interacting 50.0 57 0.002 29.5 8.8 17 59-75 49-65 (240)
288 2nsz_A Programmed cell death p 49.2 79 0.0027 25.9 8.3 64 386-449 10-78 (129)
289 3jxi_A Vanilloid receptor-rela 47.8 32 0.0011 32.0 6.7 89 91-179 13-119 (260)
290 3hra_A Ankyrin repeat family p 47.8 59 0.002 28.5 8.2 108 60-176 13-129 (201)
291 2l0z_A Glycoprotein G2; zinc-b 46.3 6.8 0.00023 24.3 0.9 17 703-719 12-29 (42)
292 1k1a_A B-cell lymphoma 3-encod 46.1 1.3E+02 0.0044 27.1 10.6 24 91-114 17-40 (241)
293 2r9g_A AAA ATPase, central reg 43.1 1.3E+02 0.0043 26.8 8.8 67 312-379 10-84 (204)
294 1oyz_A Hypothetical protein YI 41.9 2.2E+02 0.0075 26.5 22.0 18 381-398 140-157 (280)
295 3b7b_A Euchromatic histone-lys 41.6 1.7E+02 0.0059 26.2 10.7 19 157-175 81-99 (237)
296 2nsz_A Programmed cell death p 40.5 79 0.0027 25.9 7.0 61 287-347 12-77 (129)
297 4a1g_A Mitotic checkpoint seri 40.0 1.7E+02 0.0058 24.7 9.0 48 536-583 84-133 (152)
298 1k1a_A B-cell lymphoma 3-encod 39.6 1.7E+02 0.0057 26.3 10.3 26 190-215 15-40 (241)
299 2ion_A PDCD4, programmed cell 38.7 81 0.0028 26.8 6.9 64 386-449 12-80 (152)
300 2pk8_A Uncharacterized protein 36.2 1.3E+02 0.0045 22.7 6.5 76 609-706 14-89 (103)
301 2lo3_A SAGA-associated factor 35.9 13 0.00043 23.3 0.9 14 675-688 15-28 (44)
302 3hra_A Ankyrin repeat family p 34.9 2E+02 0.0067 24.9 9.6 147 91-250 13-172 (201)
303 1n11_A Ankyrin; clathrin, BAND 34.4 3.7E+02 0.013 26.9 14.4 14 436-449 359-372 (437)
304 2wvi_A Mitotic checkpoint seri 34.1 2.2E+02 0.0077 24.4 9.1 48 536-583 79-128 (164)
305 2rfa_A Transient receptor pote 34.0 2.4E+02 0.0083 25.0 10.3 15 60-74 11-25 (232)
306 2d2s_A Exocyst complex compone 33.5 1.2E+02 0.004 28.0 7.7 23 86-108 24-46 (235)
307 2zu6_B Programmed cell death p 33.3 1.2E+02 0.0041 29.3 8.0 27 154-180 7-33 (307)
308 3aji_A 26S proteasome non-ATPa 32.8 1.9E+02 0.0065 25.7 9.4 108 60-177 14-130 (231)
309 4a1g_A Mitotic checkpoint seri 32.8 1.6E+02 0.0056 24.9 7.7 31 184-214 104-134 (152)
310 3d9h_A CDNA FLJ77766, highly s 32.4 2.1E+02 0.0071 26.8 9.9 118 51-178 15-150 (285)
311 3ctd_A Putative ATPase, AAA fa 32.4 1.8E+02 0.0063 26.0 8.2 68 312-379 31-106 (213)
312 2ion_A PDCD4, programmed cell 32.2 75 0.0026 27.0 5.6 60 287-346 14-78 (152)
313 3ygs_P Procaspase 9; apoptosis 31.2 43 0.0015 25.9 3.7 36 297-332 52-87 (97)
314 3ljn_A Hypothetical protein; a 31.1 3.7E+02 0.013 26.0 12.2 53 293-345 61-113 (364)
315 3bqo_A Telomeric repeat-bindin 30.7 1.3E+02 0.0045 26.6 6.8 60 501-560 94-160 (211)
316 4b4t_S RPN3, 26S proteasome re 30.4 1.4E+02 0.0046 31.3 8.2 60 450-511 232-296 (523)
317 2zu6_B Programmed cell death p 29.8 3.8E+02 0.013 25.7 12.2 66 417-484 169-236 (307)
318 3aji_A 26S proteasome non-ATPa 29.6 2.1E+02 0.0072 25.4 9.1 87 87-178 10-98 (231)
319 2rfa_A Transient receptor pote 29.4 1.8E+02 0.006 26.0 8.5 172 89-275 9-218 (232)
320 2d2s_A Exocyst complex compone 29.0 1.5E+02 0.0052 27.2 7.6 29 482-510 88-116 (235)
321 3twr_A Tankyrase-2; ankyrin re 28.7 2.1E+02 0.0072 23.7 8.4 50 60-114 16-69 (165)
322 3esl_A Checkpoint serine/threo 28.4 3.2E+02 0.011 24.3 10.7 54 429-483 94-148 (202)
323 3bge_A Predicted ATPase; struc 26.9 1.8E+02 0.0062 25.8 7.1 47 316-362 7-56 (201)
324 3jxi_A Vanilloid receptor-rela 25.4 3.6E+02 0.012 24.4 10.0 53 190-242 11-72 (260)
325 2pnn_A Transient receptor pote 25.0 2.2E+02 0.0074 26.3 8.4 20 192-211 21-40 (273)
326 3mkr_B Coatomer subunit alpha; 24.7 1.6E+02 0.0056 28.4 7.1 61 507-581 186-248 (320)
327 2hgo_A CASSIICOLIN; toxin, dis 24.7 13 0.00044 19.9 -0.3 14 707-720 7-22 (27)
328 4gq2_M Nucleoporin NUP120; bet 24.6 6.1E+02 0.021 28.9 13.3 85 455-545 816-925 (950)
329 2b7e_A PRE-mRNA processing pro 23.4 71 0.0024 22.0 3.1 33 96-128 2-35 (59)
330 2pnn_A Transient receptor pote 23.3 1.8E+02 0.0061 27.0 7.4 99 79-179 10-127 (273)
331 3eiq_C Programmed cell death p 23.0 5.5E+02 0.019 25.2 18.2 65 386-450 220-289 (358)
332 1ya0_A SMG-7 transcript varian 21.2 1.9E+02 0.0066 30.1 7.5 74 489-562 156-231 (497)
333 3utm_A Tankyrase-1; tankyrase, 21.0 5.3E+02 0.018 24.4 14.8 245 51-311 25-306 (351)
334 3b7b_A Euchromatic histone-lys 20.7 3.3E+02 0.011 24.1 8.6 131 37-178 28-169 (237)
335 2r9g_A AAA ATPase, central reg 20.4 4.5E+02 0.016 23.3 8.8 66 182-248 12-85 (204)
336 2fe3_A Peroxide operon regulat 20.2 1.9E+02 0.0064 24.1 6.0 73 395-467 2-74 (145)
337 3ljn_A Hypothetical protein; a 20.2 5.9E+02 0.02 24.5 11.6 13 360-372 253-265 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-43 Score=398.05 Aligned_cols=530 Identities=8% Similarity=-0.028 Sum_probs=373.5
Q ss_pred HHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHH
Q 005000 22 PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101 (720)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 101 (720)
+...|..+....++|......++..++. ..+... +.++|.+..++..|+.++.+++..|+.++..|.+.|++++|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (597)
T 2xpi_A 29 AYMTPPSMGALNANNSNSQLSTLTISPM--TYLANN-TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAF 105 (597)
T ss_dssp ----------------CTTSCGGGGCGG--GGGC----------------------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCccHHHHhhccccccccceeechh--hhhccc-ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3334444555555665554444433322 233445 6788999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--
Q 005000 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-- 179 (720)
Q Consensus 102 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-- 179 (720)
+|++|.. ..||..++..+..+|.+.|++++|.++++.+... ++++.+++.++.+|.++|++++|.++|+++...
T Consensus 106 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 181 (597)
T 2xpi_A 106 VGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181 (597)
T ss_dssp HHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-
T ss_pred HHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc
Confidence 9999986 4578899999999999999999999999988653 678999999999999999999999999964433
Q ss_pred -----------------CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhcCCCchH--HHHH-
Q 005000 180 -----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS-VTIVLVLSACAKLKDLDV--GKRA- 238 (720)
Q Consensus 180 -----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~- 238 (720)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+..+. +..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp ---------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcC
Confidence 37899999999999999999999999998864 443 334444333322222111 1111
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCc
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMP---ERDY 313 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~ 313 (720)
+..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++. ..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 339 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL 339 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC
T ss_pred CcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH
Confidence 34444444455566777778889999999999999999887 788888888888888888888888888875 2367
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 393 (720)
.+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..+...+.+.|+++.|..++..+.+.. +.+..+++.++.+|
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 417 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSF 417 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 788888888888888888888888887543 4466777777777778888888888777777643 34566777777778
Q ss_pred hhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 005000 394 CKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.+
T Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888877777642 366777777777777788888888887777653 3356677777777777788888887
Q ss_pred HHHHHHHHc---CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 471 YFADMTIQH---GIEPN--EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 471 ~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777775322 55666 677777777777788888887777776 3334 6777777777777778888888888877
Q ss_pred HhcCCCCcchHHHHHhHhhh
Q 005000 544 LELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 544 ~~~~p~~~~~~~~l~~~~~~ 563 (720)
++++|+++..+..|+++|..
T Consensus 577 l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTC-
T ss_pred HhcCCCChHHHHHHHHHHhc
Confidence 77777777777777777653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-38 Score=357.75 Aligned_cols=478 Identities=12% Similarity=0.066 Sum_probs=397.6
Q ss_pred HcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 170 (720)
...|....+...+..+. .++...|+.++..+.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 44555555666655542 367888999999999999999999999999864 467789999999999999999999
Q ss_pred HHHhcC--CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCCHhhHHHHHHHHhcCCCch
Q 005000 171 GIFDVS--YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK---------------GVLPTSVTIVLVLSACAKLKDLD 233 (720)
Q Consensus 171 ~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~ 233 (720)
.+|+.+ ..++..+|+.++.+|.+.|++++|+++|+++... |..++..+|..++.++.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 999988 4578999999999999999999999999953221 23445788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH---HhhcCCC----CchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI---FGNIKNK----DVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~---~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
+|.++++.+.+.+.. +...+..+...+...+..+.+... |..+... ....|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999887532 455566666555444333222111 2222222 23456667888999999999999999
Q ss_pred hCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh
Q 005000 307 QMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384 (720)
Q Consensus 307 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 384 (720)
++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.+.|..++..+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 789999999999999999999999999999865 4477789999999999999999999999998654 56788
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999885 3478899999999999999999999999999864 4477899999999999
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN--SIVWGALLGACRVHRD 532 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 532 (720)
.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999743 2446889999999999999999999999988 44787 7899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++|...++++++.+|+++.+|..++.+|.+.|+|++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998763
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=8.5e-25 Score=231.26 Aligned_cols=369 Identities=12% Similarity=0.120 Sum_probs=277.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 005000 189 SGYKRVKQFDETRKLFGEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267 (720)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 267 (720)
..+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566666666666665543 233 2334444444556666666666666666543 33556666666667777777
Q ss_pred HHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 268 GFALEIFGNIKN--K-DVISWTAIVTGYINRGQVDMARQYFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 268 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
++|...|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777766666542 2 344566666667777777777766666542 2 344567777788888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHH
Q 005000 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWT 418 (720)
Q Consensus 342 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 418 (720)
.. +.+..++..+...+...|+++.|...+..+.+.+ +.+...+..+...+.+.|++++|...|++.. ..+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 3346777778888888888888888888887765 4456778888899999999999999998774 33678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 005000 419 AMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497 (720)
Q Consensus 419 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 497 (720)
.+...|...|++++|++.|+++.+. .| +..++..+..++...|++++|.+.|+++.+. .+.+...+..+...|.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 9999999999999999999999985 34 4568888999999999999999999998743 35578889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 498 AGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++.+|..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 4555 578899999999999999999999999999999999999999998887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=9.4e-27 Score=251.05 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=175.0
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHHHHcCCCCChh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG---------ALELGEWVKTYIDKNKVKNDIF 384 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~i~~~~~~~~~~~~~~ 384 (720)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+ .++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3588899999999999999999999999999999999999999998654 4789999999999999999999
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREML----RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 460 (720)
+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999995 57999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 005000 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 498 (720)
+.|++++|.++|++|. +.+..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999997 789999999999999998764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.4e-27 Score=254.52 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=171.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCChh
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA---------VEFGKELHCHVLKFGFDSSVF 151 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 151 (720)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999986553 688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSY----KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998875 47999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 005000 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264 (720)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 264 (720)
+.|+.++|.+++++|.+.|..|+..+++.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=9.6e-24 Score=223.16 Aligned_cols=349 Identities=12% Similarity=0.066 Sum_probs=304.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHH
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVD 299 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (720)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.... .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999998874 33566777888999999999999999987654 46678999999999999999
Q ss_pred HHHHHHhhCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005000 300 MARQYFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD-EFTIVSILTACANLGALELGEWVKTYID 375 (720)
Q Consensus 300 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 375 (720)
+|.+.|+++.. | +..+|..+...+.+.|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998753 3 4567999999999999999999999999875 344 4456667777888999999999999998
Q ss_pred HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHH
Q 005000 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVT 451 (720)
Q Consensus 376 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 451 (720)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 864 45678899999999999999999999999853 35778999999999999999999999999885 454 578
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM-KPNSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~ 529 (720)
+..+..++...|++++|.+.|+++.+. -+.+...|..+...|.+.|++++|.+.++++ .. +++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 889999999999999999999998732 2335778999999999999999999999998 33 3478899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.5e-22 Score=216.74 Aligned_cols=446 Identities=12% Similarity=-0.030 Sum_probs=276.8
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 160 (720)
..|..+...+.+.|++++|+..|+++.+.+ ||..++..+..++...|+++.|.+.++.+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 346666777888888888888888888754 677788888888888888888888888888765 34556777788888
Q ss_pred HhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHH
Q 005000 161 CLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 161 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888775432 23334444444444433333333333333322222222211111100001111111111
Q ss_pred HHHHHHHcCC---------CCChHHHHHHHHHHHh---cCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 238 AHRYVKECKI---------VPNLILENALTDMYAA---CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 238 ~~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------~~ 219 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR------------------------LF 219 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH------------------------HH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH------------------------Hh
Confidence 1111111100 1112222222222222 4555555555443221 00
Q ss_pred hhCC----------CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005000 306 DQMP----------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375 (720)
Q Consensus 306 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 375 (720)
+... ..+..+|..+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0001 0124567778888888888888888888887754 336667777777778888888888887777
Q ss_pred HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 005000 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 376 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
+.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...+...|++++|+..|+++.+.. +.+..++
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 375 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVP 375 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHH
Confidence 654 3456677778888888888888888888764 2356677788888888888888888888877742 2244677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGR---AGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
..+...+...|++++|...++.+.....-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 77778888888888888888877643322222 3477778888888 88888888888876 3334 56777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
...+...|++++|...+++++++.|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 8888888888888888888888888876665554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=214.92 Aligned_cols=422 Identities=10% Similarity=-0.030 Sum_probs=295.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.+..+...|.+.|++++|...|+++.. ||..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 444555666667777777777765532 566666666777777777777777777666543 22345666666666677
Q ss_pred CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHH---HHHHHhcCCHHHHH
Q 005000 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAI---VTGYINRGQVDMAR 302 (720)
Q Consensus 230 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~A~ 302 (720)
|++++|...+..+.+.+. ++......++..+.+......+.+.+..+.. ++...++.. ............+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 777777777776666543 2333333444444333333333332221111 000000000 00000111111111
Q ss_pred HHHhhCCC---------C-CccchHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCCC--------CHHHHHHHHH
Q 005000 303 QYFDQMPE---------R-DYVLWTAMIDGYLR---VNRFREALTLFREMQT-----SNIRP--------DEFTIVSILT 356 (720)
Q Consensus 303 ~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~ 356 (720)
..+..... + +...|......+.. .|++++|+..|+++.+ ..-.| +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 22221111 1 13344445555554 8999999999999987 32122 3456777778
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHH
Q 005000 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 357 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 433 (720)
.+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+.+.. .+...|..+...+...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 889999999999999999987644 88889999999999999999999998854 3677899999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005000 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-- 511 (720)
Q Consensus 434 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-- 511 (720)
+..|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999864 2345788888999999999999999999987432 335678899999999999999999999887
Q ss_pred --CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 512 --PMKPN----SIVWGALLGACRV---HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 512 --~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 4489999999999 999999999999999999999999999999999999999999999998764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.7e-21 Score=206.72 Aligned_cols=322 Identities=13% Similarity=0.075 Sum_probs=242.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHH
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGY 323 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 323 (720)
+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|...|+++.+ .+..+|..++..|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344555555555556666666665555432 2445555566666666666666666655432 2455677777778
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHhccCcHHHHHHHHHHHHHcCCCCChhHhh
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDE----FTIVSI------------LTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 387 (720)
.+.|++++|+..|+++.+. .|+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 8888888888888877764 3433 333333 334777889999999998888764 45778899
Q ss_pred HHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHH--------
Q 005000 388 ALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGV-------- 455 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l-------- 455 (720)
.+..+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++... .|+.. .+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999885 347889999999999999999999999999874 55554 33333
Q ss_pred ----HHHHHhcCChhhHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 456 ----LSACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 456 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+|.+.|++++|..+|+++.+...-.|. ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 78899999999999999999743222122 458899999999999999999999997 4455 689999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH------------hHhhhcC-----ChhHHHHHHHH
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLC------------NIYAACN-----RWDNFRELRQM 576 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 576 (720)
...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 6677777 44455555554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.9e-20 Score=205.44 Aligned_cols=413 Identities=10% Similarity=0.025 Sum_probs=261.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCC
Q 005000 155 ALISTYCLCGEVDMARGIFDVSY---KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231 (720)
Q Consensus 155 ~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 231 (720)
.+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.|+++...+ +.+..++..+...+...|+
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCC
Confidence 33444444444444444444332 1234444455555555555555555555544432 1233444444445555555
Q ss_pred chHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK------DVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 232 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
+++|...++ .... .|+ .....+..+...+....|...++.+... ........+..+....+.+.+...+
T Consensus 109 ~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 555555553 2221 111 1111223333344445566666555432 1222334455555666666666666
Q ss_pred hhCCCCCcc---chHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCcHHH
Q 005000 306 DQMPERDYV---LWTAMIDGYLR--------VNRFREALTLFREMQTSNIRPD--------EFTIVSILTACANLGALEL 366 (720)
Q Consensus 306 ~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~ 366 (720)
......+.. .+..+...+.. .|++++|+.+|+++.+.. |+ ..++..+...+...|+++.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 555544433 22233222221 247788888888887643 33 2235555566677788888
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
|...+..+.+.. |+..++..+...|.+.|++++|...|+++. ..+..+|..+...+...|++++|++.|+++.+.
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 888888888764 447778888888889999999999988774 346778888889999999999999999998875
Q ss_pred CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCC----C
Q 005000 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMK----P 515 (720)
Q Consensus 444 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~----p 515 (720)
. +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ +.. .
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 3 223467888888889999999999999988743 2345678888899999999999999998886 111 1
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 516 NSIVWGALLGACRVH----------RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
....+..+...+... |++++|...++++++.+|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 223344555667777 99999999999999999999999999999999999999999999988764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=3.8e-20 Score=204.44 Aligned_cols=439 Identities=11% Similarity=0.007 Sum_probs=309.8
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 159 (720)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3467888889999999999999999998864 3466788888899999999999999999999876 3467788888999
Q ss_pred HHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhcCCCch
Q 005000 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK------GVLPTSVTIVLVLSACAKLKDLD 233 (720)
Q Consensus 160 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~ 233 (720)
|.+.|++++|.+.|+.+ ..+....+..+..+...+...+|+..++++... ...|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 99999999999999643 333333344455666666778888888887543 12233332222 22222222
Q ss_pred HHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcC-CHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005000 234 VGKRAHRYVKECKIVPN-LILENALTDMYAACG-EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 311 (720)
.+...+..... ..+. ......+...+...+ ++ ....|++++|..+|+.+.+.
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------------------------~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGY------------------------LVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHH------------------------HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhh------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 22111111000 0111 112222222222111 00 00113455555555555433
Q ss_pred Cc----------cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 005000 312 DY----------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381 (720)
Q Consensus 312 ~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 381 (720)
++ .+|..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.. +.
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 308 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC
Confidence 22 24666777888999999999999999875 4667788888888999999999999999988865 45
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
+..++..+...|.+.|++++|...|++..+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 678899999999999999999999998853 367789999999999999999999999999863 3345688888999
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEP----NEAHYGCMVDLLGRA----------GHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...++++ ...| +..+|..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999864321111 223345566778888 9999999999987 3444 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+...+...|++++|...+++++++.|+++....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999998766543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.2e-19 Score=195.60 Aligned_cols=361 Identities=9% Similarity=0.015 Sum_probs=215.0
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 261 (720)
..|..+...|.+.|++++|+.+|+++.... +.+..++..+...+...|+++.|...+..+++.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 345555555555555555555555555431 2234455555555555555555555555555543 22455566666666
Q ss_pred HhcCCHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHH
Q 005000 262 AACGEMGFALEIFGNIKNKDV------ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335 (720)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (720)
.+.|++++|...|+++...++ ..|..++..+... .+..+...+.+.|++++|+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666554222 3444443332111 112223334455555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC--C-
Q 005000 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR--K- 412 (720)
Q Consensus 336 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~- 412 (720)
|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.. |
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55555432 2344455555555555555555555555554432 33455666666666667777777766666632 2
Q ss_pred CHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 413 DKFTWTAM------------IVGLAINGHGDKSLDMFSQMLRASIIPD-----EVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 413 ~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
+...|..+ ...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344433 77788888888999988888874 454 336777788888889999999988887
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHH
Q 005000 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGA------------CRVHR-----DAEMA 536 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~------------~~~~g-----~~~~a 536 (720)
.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +...+..+..+ |...| +.+++
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 632 2335788888888899999999999988887 5666 45566655533 33333 56777
Q ss_pred HHHHHH-HHhcCCCCcc----------hHHHHHhHhhhcCChhH
Q 005000 537 EMAAKQ-ILELDPDNEA----------VYVLLCNIYAACNRWDN 569 (720)
Q Consensus 537 ~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 569 (720)
.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 400 ~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 888886 7788887432 34455555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.3e-17 Score=171.50 Aligned_cols=303 Identities=12% Similarity=0.083 Sum_probs=219.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHH
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGY 323 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 323 (720)
++..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+ .+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 455677778888888888888888887653 3456777777778888888888888776543 2456677777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCH
Q 005000 324 LRVNRFREALTLFREMQTSNIRP---DEF-TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 399 (720)
...|++++|+..|+++.+. .| +.. .+..+... .. ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888777764 34 222 11111100 00 01123345677788888
Q ss_pred HHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 400 EKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 400 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
++|.+.|+++. ..+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888774 3366778888888888888888888888888753 3345677778888888888888888888876
Q ss_pred HHcCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 005000 477 IQHGIEPNEAHYG------------CMVDLLGRAGHLNEALEVIKNM-PMKPN-S----IVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 477 ~~~~~~p~~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 538 (720)
+... .+...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|..
T Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4321 1222222 3366788999999999999887 33343 3 234557788899999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988763
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=2.2e-17 Score=171.57 Aligned_cols=324 Identities=10% Similarity=0.010 Sum_probs=238.5
Q ss_pred CHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHH
Q 005000 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTG 291 (720)
Q Consensus 215 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 291 (720)
|...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567778888999999999999999999874 34678899999999999999999999998764 366789999999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCc------cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 005000 292 YINRGQVDMARQYFDQMPERDY------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365 (720)
Q Consensus 292 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 365 (720)
+.+.|++++|...|+...+.++ ..+..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998866544 23333311000 001112223334444555
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554444432 33455666777777777888888887777643 3567778888888888888888888888776
Q ss_pred CCCCCCh-HHHH------------HHHHHHHhcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHH
Q 005000 443 ASIIPDE-VTYV------------GVLSACTHTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 443 ~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~ 507 (720)
. .|+. ..+. .+...+...|++++|...++.+.+...-.|.. ..+..+...|.+.|++++|.+.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4 3333 2222 23566888999999999999987433221211 3355688899999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+++. ...| +..+|..+...+...|++++|...++++++++|+++.....+..++...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9987 3445 78899999999999999999999999999999999988888877765443
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.2e-18 Score=178.81 Aligned_cols=284 Identities=11% Similarity=0.076 Sum_probs=96.1
Q ss_pred ccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 005000 61 EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140 (720)
Q Consensus 61 ~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 140 (720)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5789999999999997775 899999999999999999999975 26888999999999999999999998888
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 005000 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220 (720)
Q Consensus 141 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 220 (720)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45688899999999999999999988864 66778999988899999999998888865 2455
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+ ++.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~e-------------------------------f~l 195 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE-------------------------------FRL 195 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC-------------------------------HHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCc-------------------------------HHH
Confidence 5555555555555555555444 144444444455554444 444
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHcC
Q 005000 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA--NLGALELGEWVKTYIDKNK 378 (720)
Q Consensus 301 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~~ 378 (720)
|......+. .++.....++..|.+.|++++|+.+++...... +.....|+-+--+++ +.+.+.+..+.+. .+.+
T Consensus 196 A~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~in 271 (449)
T 1b89_A 196 AQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVN 271 (449)
T ss_dssp HHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSC
T ss_pred HHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhc
Confidence 444433332 222223346666666777777777766665433 223333333333333 3333333333332 1112
Q ss_pred CCC------ChhHhhHHhhhhhhcCCHHHHHHHHH
Q 005000 379 VKN------DIFVGNALIDMYCKCGDVEKAQRVFR 407 (720)
Q Consensus 379 ~~~------~~~~~~~li~~y~~~g~~~~A~~~~~ 407 (720)
+++ +...|..++-.|.+.++++.|....-
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 222 35567788888888888888776543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.4e-16 Score=163.53 Aligned_cols=253 Identities=12% Similarity=0.054 Sum_probs=186.1
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
...+..++..+...|++++|+.+++++.+.. +.+...+..+...+...| +++.|...+..+.+.. +.+...+..+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 133 (330)
T 3hym_B 56 ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGH 133 (330)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3445556666666677777777776666542 234455555666666666 6677777766666554 334566777888
Q ss_pred hhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 88888888888888887742 245677778888888888888888888888753 33456777888888888999999
Q ss_pred HHHHHHHHHHcC-------CCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 469 REYFADMTIQHG-------IEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 469 ~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
...++++..... .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 988888764321 1334678888999999999999999998887 3334 677888899999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHhHh-hhcCChh
Q 005000 540 AKQILELDPDNEAVYVLLCNIY-AACNRWD 568 (720)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 568 (720)
++++++++|+++..+..++.++ ...|+.+
T Consensus 293 ~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999888 4556543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.8e-15 Score=164.72 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=255.8
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCeeeHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhH
Q 005000 149 SVFVQNALISTYCL----CGEVDMARGIFDVSYK-DDVVTWNAMFSGYKR----VKQFDETRKLFGEMERKGVLPTSVTI 219 (720)
Q Consensus 149 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 219 (720)
++.....|...|.. .+++++|...|+...+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666666666666 6667777766664332 345556666666666 666666666666665544 33444
Q ss_pred HHHHHHHhc----CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhcCCCCchhHHHHHHH
Q 005000 220 VLVLSACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA----CGEMGFALEIFGNIKNKDVISWTAIVTG 291 (720)
Q Consensus 220 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~ 291 (720)
..+-..+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|+
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~---------------- 175 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS---------------- 175 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH----------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH----------------
Confidence 444444444 455666666666655543 34444445555544 444555554444
Q ss_pred HHhcCCHHHHHHHHhhCCC-CCccchHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 005000 292 YINRGQVDMARQYFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRPDEFTIVSILTACAN----LG 362 (720)
Q Consensus 292 ~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~ 362 (720)
+..+ .++.++..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .+
T Consensus 176 ---------------~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 176 ---------------KAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp ---------------HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ---------------HHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 4322 245566667777776 778888888888877765 44555555555553 67
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHHc-----CChHH
Q 005000 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAIN-----GHGDK 432 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~ 432 (720)
+.+.|...+....+.+ +...+..|..+|.. .++.++|...|+...+. +...+..+...|... ++.++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7888888888777754 34566677777777 88999999999988654 677888888888887 89999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHH
Q 005000 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTG---MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEAL 505 (720)
Q Consensus 433 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~ 505 (720)
|+..|++..+.| +...+..+...+...| +.++|.++|++..+ . .++..+..+..+|.. .+++++|.
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 4456666777777656 78999999998863 2 467788889999998 89999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhhc
Q 005000 506 EVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAAC 564 (720)
Q Consensus 506 ~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 564 (720)
+.+++.-...++..+..|...+.. .+++++|...++++.+.+|+ ++.....|+.++...
T Consensus 388 ~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 388 IWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999987333478888899999888 89999999999999999854 777888888877653
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.3e-17 Score=172.51 Aligned_cols=278 Identities=13% Similarity=0.018 Sum_probs=205.4
Q ss_pred cCCHHHHHH-HHhhCCCC-------CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 005000 295 RGQVDMARQ-YFDQMPER-------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366 (720)
Q Consensus 295 ~g~~~~A~~-~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 366 (720)
.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 55533221 24456677777777777777777777777653 3455666667777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHH---------------HHHHHHHcC
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTA---------------MIVGLAING 428 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~~g 428 (720)
|...+..+.+.. +.+..++..+...|.+.|++++|...|+++... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777776654 445667777777777778888877777776432 1112211 133334889
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
++++|+..|+++.+..... +..++..+...+...|++++|...|+++... .+.+...+..+...|.+.|++++|.+.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998853221 4678888999999999999999999998743 234578899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHhHhhhcCChhHHHHHH
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-----------EAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
++++ ...| +..+|..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9987 3445 67899999999999999999999999999998887 789999999999999999999987
Q ss_pred HH
Q 005000 575 QM 576 (720)
Q Consensus 575 ~~ 576 (720)
++
T Consensus 354 ~~ 355 (368)
T 1fch_A 354 AR 355 (368)
T ss_dssp TT
T ss_pred HH
Confidence 63
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=3.8e-14 Score=161.57 Aligned_cols=392 Identities=9% Similarity=0.065 Sum_probs=288.9
Q ss_pred HHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-C-----CeeeHHHHHHHHHhCCChhHHHHHHHHH
Q 005000 136 ELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMARGIFDVSYK-D-----DVVTWNAMFSGYKRVKQFDETRKLFGEM 207 (720)
Q Consensus 136 ~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m 207 (720)
++.++.....+ ..++.--...+..|...|...+|.++++++.- + +...-|.++....+. +..+..++..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 44444443332 22333345667778888888888888887652 2 224455566666666 445555555554
Q ss_pred HHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHH
Q 005000 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287 (720)
Q Consensus 208 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 287 (720)
.. .....+...|...|.+++|..+++... -.....+.+ +-..+++++|.++.++.. +..+|..
T Consensus 1048 d~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsq 1110 (1630)
T 1xi4_A 1048 DN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQ 1110 (1630)
T ss_pred hh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHH
Confidence 31 113336667778899999999988752 111222223 237788999999998774 4667889
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++..
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence 999999999999999999764 677788889999999999999999998877654 3333344588888888888754
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
..+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 4432 2 345566677999999999999999999986 48999999999999999999999876 3
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLG 525 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 525 (720)
+..+|..+-.+|...|++..|...... +..+++.+..++..|.+.|.+++|+.+++.. +.+| ....|.-|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 568888889999999999998887543 4456777889999999999999999999776 5555 3456655655
Q ss_pred HHHhc--CCHHHHHHHHHHHHhcCC-----CCcchHHHHHhHhhhcCChhHHHHH
Q 005000 526 ACRVH--RDAEMAEMAAKQILELDP-----DNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 526 ~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.+.+. ++..++.+.|..-..+.| ++...|..+..+|.+.|+|+.|...
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 55554 466677777777777766 6778899999999999999999853
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=3.1e-15 Score=164.67 Aligned_cols=208 Identities=7% Similarity=0.004 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhh-------cCCHH-------HHHHHHHhccC---C-CHHHHHHHHHHHHHc
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCK-------CGDVE-------KAQRVFREMLR---K-DKFTWTAMIVGLAIN 427 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 427 (720)
.+..++..+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444555555432 3445566666666554 56655 66777776643 2 456677777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHH-HHhcCCHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL-LGRAGHLNE 503 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~~e 503 (720)
|++++|..+|+++++. .|+. ..|...+..+.+.|++++|.++|++..+ ..| +...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 7777777777777663 4432 3566666666666777777777776652 222 22223222222 235677777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA----VYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+......|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777665 2233 4666777777777777777777777777776655443 5555566666667777777776666
Q ss_pred Hh
Q 005000 578 LD 579 (720)
Q Consensus 578 ~~ 579 (720)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=4.9e-14 Score=160.64 Aligned_cols=350 Identities=11% Similarity=0.068 Sum_probs=276.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 005000 184 WNAMFSGYKRVKQFDETRKLFGEMERKGV--LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261 (720)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 261 (720)
-...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.+.....-+. ....+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHH
Confidence 35567889999999999999999884321 12233444455555555 556666665544321 234477888
Q ss_pred HhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
...|.+++|..+|++... .....+.++ -..+++++|.++.++. .++.+|..+..++.+.|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 899999999999999752 222223332 2788999999999877 34678999999999999999999999653
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHH
Q 005000 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421 (720)
Q Consensus 342 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 421 (720)
-|...|..+..+|.+.|+++.+.+.+....+.. ++..+.+.++..|+|.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 467788899999999999999999999988865 44444556999999999999654443 455777888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHH
Confidence 9999999999999999985 37899999999999999999999865 3568899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc--CChhHHHHHHHH
Q 005000 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC--NRWDNFRELRQM 576 (720)
Q Consensus 502 ~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~ 576 (720)
..|....... ..++..+..++..|...|.+++|+.++++.++++|.+...|..|+.+|++- ++..++.+.|..
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999987754 345666779999999999999999999999999999999999999888764 566666666553
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.8e-16 Score=161.28 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=227.2
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHh
Q 005000 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390 (720)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 390 (720)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888999999999999999999998764 3344556667778889999999999999998865 45678889999
Q ss_pred hhhhhcC-CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 391 DMYCKCG-DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 391 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
..|...| ++++|...|++..+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999854 357789999999999999999999999999863 224567777888999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM----------KPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
+|.+.++++.+ ..+.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999862 22445788999999999999999999999886 11 2346799999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|...+++++++.|+++..+..++.+|...|++++|.+.++++.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987654
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.9e-17 Score=166.92 Aligned_cols=285 Identities=12% Similarity=0.108 Sum_probs=113.9
Q ss_pred hcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHH
Q 005000 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 241 (720)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7789999999999996664 999999999999999999999975 36778999999999999999999998888
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHH
Q 005000 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321 (720)
Q Consensus 242 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 321 (720)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999988 48999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
++.+.|++++|++.++++ .+..++..++.+|...|+++.|...... +..++.-...++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999999988 2678889999999999998888433221 11222223345566666666666
Q ss_pred HHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 402 AQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 402 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
|..+++....- ....|+-+.-.|++. +.+++.+..+.|.. .
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky---------------------------------~p~k~~ehl~~~~~---~ 269 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKF---------------------------------KPQKMREHLELFWS---R 269 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHST---T
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhc---------------------------------CHHHHHHHHHHHHH---H
Confidence 66665554322 233444444444432 22333333333321 1
Q ss_pred cCCCc------cHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 479 HGIEP------NEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 479 ~~~~p------~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
-+++| +...|.-++.+|..-++++.|...+-+-
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 22222 2445667777888888888887766554
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.5e-14 Score=157.42 Aligned_cols=335 Identities=13% Similarity=0.053 Sum_probs=250.4
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CchhHHHHHHHHHh----cCCHH
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA----CGEMGFALEIFGNIKNK-DVISWTAIVTGYIN----RGQVD 299 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~ 299 (720)
.++++.|...+....+.| +...+..|..+|.. .++.++|...|++..+. +...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444432 33344444444444 44445554444443322 33344444444444 45555
Q ss_pred HHHHHHhhCCCC-CccchHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHH
Q 005000 300 MARQYFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRPDEFTIVSILTACAN----LGALELGEWV 370 (720)
Q Consensus 300 ~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i 370 (720)
+|.+.|++..+. ++.++..+...|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 555555554333 55677778888887 789999999999999876 56677777777776 7899999999
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI----NGHGDKSLDMFSQML 441 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 441 (720)
+....+.+ +...+..|..+|.. .+++++|...|++..+. +...+..+...|.. .++.++|++.|++..
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 99999875 56677888888886 88999999999988654 67788888888888 899999999999998
Q ss_pred HCCCCCChHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhCCC
Q 005000 442 RASIIPDEVTYVGVLSACTHT-----GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG---HLNEALEVIKNMPM 513 (720)
Q Consensus 442 ~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~~~~ 513 (720)
+.| +...+..+...+... +++++|..+|++..+ .+ +...+..+..+|.+.| ++++|.+.|++.-.
T Consensus 287 ~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 765 455666677777776 899999999999863 33 4567788888888877 88999999998733
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCC
Q 005000 514 KPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRG 581 (720)
Q Consensus 514 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 581 (720)
..++..+..|...+.. .+++++|...++++.+.. ++.++..|+.+|.. .+++++|.+.+++..+.+
T Consensus 360 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 360 KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3578899999999988 899999999999999865 57899999999998 899999999999998866
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=9.2e-17 Score=167.85 Aligned_cols=261 Identities=10% Similarity=-0.023 Sum_probs=208.1
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888888888888888888888754 4467778888888888888888888888888764 455778888999
Q ss_pred hhhhcCCHHHHHHHHHhccCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChHHHHHHHH
Q 005000 392 MYCKCGDVEKAQRVFREMLRKD-------------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLS 457 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 457 (720)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998885432 223344578888999999999999999986322 15678889999
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+...|++++|...|+++.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998743 2346788999999999999999999999987 4455 58899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 536 AEMAAKQILELDPD------------NEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 536 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
|...+++++++.|+ +...+..++.++...|+.+.+.+..+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367889999999999999998887554
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.1e-14 Score=160.13 Aligned_cols=404 Identities=11% Similarity=0.033 Sum_probs=243.5
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005000 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215 (720)
Q Consensus 139 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 215 (720)
+..++.. +.+...|..++. +.+.|++++|+.+|+++.. .+...|..++..+.+.|++++|..+|++.... .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 4444433 447778999998 5789999999999998754 35668999999999999999999999999876 367
Q ss_pred HhhHHHHHHHH-hcCCCchHHHH----HHHHHHHc-CCCC-ChHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC
Q 005000 216 SVTIVLVLSAC-AKLKDLDVGKR----AHRYVKEC-KIVP-NLILENALTDMYAA---------CGEMGFALEIFGNIKN 279 (720)
Q Consensus 216 ~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~ 279 (720)
...|...+... ...|+.+.|++ +++..++. |..| +..+|...+....+ .|+++.|..+|++...
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 77776666533 35677777665 66666553 5443 56778888877665 6888999999988765
Q ss_pred -CCc---hhHHHHHHHH-------------HhcCCHHHHHHHHhh-------CC------CCC--------ccchHHHHH
Q 005000 280 -KDV---ISWTAIVTGY-------------INRGQVDMARQYFDQ-------MP------ERD--------YVLWTAMID 321 (720)
Q Consensus 280 -~~~---~~~~~li~~~-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~ 321 (720)
|.. ..|....... .+.++++.|..++.. +. .++ ...|...+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 221 2333222210 023345555554443 11 111 123444443
Q ss_pred HHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCcHH-------HHHHHHHHHHHcCC
Q 005000 322 GYLRV----NRF----REALTLFREMQTSNIRPDEFTIVSILTACAN-------LGALE-------LGEWVKTYIDKNKV 379 (720)
Q Consensus 322 ~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~i~~~~~~~~~ 379 (720)
..... ++. ++|+.+|++..... +-+...+......+.+ .|+++ .|..++..+++.-.
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 32221 121 35566666666542 2244445444444443 46654 66666666665323
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccC--C-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLR--K-DK-FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+.. +.+...+...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~ 396 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 396 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHH
Confidence 44566666667777777777777777766532 2 22 366666666666677777777777766542 1122222222
Q ss_pred HHH-HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHH
Q 005000 456 LSA-CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPN--SIVWGALLGACR 528 (720)
Q Consensus 456 l~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--~~~~~~ll~~~~ 528 (720)
... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 222 224667777777777665332 224566666677777777777777777665 22222 346666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 005000 529 VHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
.+|+.+.+..+.+++.+..|++
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHHH
T ss_pred HcCCHHHHHHHHHHHHHHCchh
Confidence 6777777777777777766643
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=4.2e-15 Score=149.34 Aligned_cols=268 Identities=10% Similarity=-0.014 Sum_probs=195.7
Q ss_pred HhcCCHHHHHHHHhhCCCCCc----cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005000 293 INRGQVDMARQYFDQMPERDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 368 (720)
...|++..|+..++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555555444322 1334456667777777777665533 12455556666666667777777777
Q ss_pred HHHHHHHHcCC-CCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 369 WVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 369 ~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
+.++.+...+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 77777666553 33556677778889999999999999998 567889999999999999999999999999986 46
Q ss_pred ChHHH---HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 448 DEVTY---VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 448 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.+++. ...| ++.+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 65321 12223344568999999999999854 3567889999999999999999999999996 4556 6788999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 523 LLGACRVHRDAEM-AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 523 ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
++..+...|+.++ +...++++++++|+++.+ .++..+.+.++++..-+
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999865 678999999999998754 34566666676665543
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=1.1e-15 Score=159.73 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=216.3
Q ss_pred HHhcCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC
Q 005000 323 YLRVNRFREALT-LFREMQTSNI-RP--DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 323 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 398 (720)
+...|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8886654321 11 34456778888899999999999999999875 5577889999999999999
Q ss_pred HHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHH---------------HHHHH
Q 005000 399 VEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVG---------------VLSAC 459 (720)
Q Consensus 399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~---------------ll~a~ 459 (720)
+++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999874 3478899999999999999999999999999864 3332 2211 23344
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAE 537 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 537 (720)
...|++++|..+|+++.+...-.++...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4899999999999999754333235889999999999999999999999987 3445 6789999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHH
Q 005000 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617 (720)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 617 (720)
..+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.... ... .....+|....++..+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~-------------~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK--SRG-------------PRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--C-------------------CCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCC-------------ccccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999998764321 100 0011355667777776
Q ss_pred HHHHHHH
Q 005000 618 DEMTSDL 624 (720)
Q Consensus 618 ~~l~~~~ 624 (720)
..+...+
T Consensus 337 ~~~~~~~ 343 (368)
T 1fch_A 337 RLALSML 343 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655443
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1e-14 Score=158.09 Aligned_cols=369 Identities=11% Similarity=-0.026 Sum_probs=212.9
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHHhcCCCchHHHHHHHHHHHcC------
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERK-----G--VLP-TSVTIVLVLSACAKLKDLDVGKRAHRYVKECK------ 246 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 246 (720)
...||.+...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888888899999999999999876541 1 122 24566667777777777777777776665421
Q ss_pred CC-CChHHHHHHHHHHHhc--CCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHH-
Q 005000 247 IV-PNLILENALTDMYAAC--GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG- 322 (720)
Q Consensus 247 ~~-~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~- 322 (720)
.. ....++..+..++.+. +++++|...|++..+- ...++..+..+...
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIAS 182 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHH
Confidence 01 1123333333333333 2355555555543320 11133333333333
Q ss_pred --HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 323 --YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA----NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 323 --~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
+...++.++|++.|++..+.. +.+..++..+...+. ..++.+.|...+..+.+.. +.+..++..+...|.+.
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHc
Confidence 234466667777777666543 223344444333333 2345666777777666654 44556677777777777
Q ss_pred CCHHHHHHHHHhccC---CCHHHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 005000 397 GDVEKAQRVFREMLR---KDKFTWTAMIVGLAI-------------------NGHGDKSLDMFSQMLRASIIPDEVTYVG 454 (720)
Q Consensus 397 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 454 (720)
|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+.. +.+..++..
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 339 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSI 339 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHH
T ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhhh
Confidence 777777777777642 245555555544432 233567888888887753 223456777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVD-LLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVH 530 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~-~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~ 530 (720)
+...+...|++++|...|++... ....|.. ..+..+.. .+...|+.++|++.+++. .+.|+...+...
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------- 411 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------- 411 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-------
T ss_pred HHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-------
Confidence 88899999999999999998863 2322221 12333333 345789999999999886 567765444333
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccE
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 590 (720)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3445677888999999999999999999999999999999999998876544334444
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=2.9e-15 Score=150.50 Aligned_cols=246 Identities=9% Similarity=0.047 Sum_probs=200.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDE--FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
|.-....|++.+|+..++.... ..|+. .....+..++...|+++.+...+.. .-+|+..++..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999887643 34543 3446677889999999998865533 24567778888999999999
Q ss_pred CHHHHHHHHHhcc----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 398 DVEKAQRVFREML----RK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 398 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 24 566788888999999999999999987 456678888999999999999999999
Q ss_pred HHHHHHcCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 473 ADMTIQHGIEPNEAH---YGCMVDLLGRAGHLNEALEVIKNM-P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+.+.+. .|+... ...++..+...|++++|..+|+++ . .+++...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999743 355322 223445556679999999999998 2 33478899999999999999999999999999999
Q ss_pred CCCcchHHHHHhHhhhcCChhH-HHHHHHHHHhC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDN-FRELRQMILDR 580 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 580 (720)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888887753
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.9e-15 Score=154.81 Aligned_cols=259 Identities=12% Similarity=-0.021 Sum_probs=191.5
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 393 (720)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666666666666666666666543 2345555566666666666666666666666553 34456666677777
Q ss_pred hhcCCHHHHHHHHHhccCC---CHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 394 CKCGDVEKAQRVFREMLRK---DKFTWTAM--------------IV-GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
.+.|++++|.+.|+++.+. +...+..+ .. .+...|++++|++.++++.+.. +.+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766422 12222222 22 3667788899999999988753 3356788888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA 533 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 533 (720)
...+...|++++|..+++++... .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 88999999999999999988743 2345778899999999999999999999987 3344 678899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 534 EMAEMAAKQILELDPD------------NEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
++|...++++++..|+ ++..+..++.+|.+.|++++|.+++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 7889999999999999999999987643
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=9.8e-16 Score=159.98 Aligned_cols=230 Identities=12% Similarity=0.043 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHH
Q 005000 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGL 424 (720)
Q Consensus 348 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 424 (720)
...+......+.+.|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777888899999999999999999875 55788999999999999999999999998853 4688999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCh-----------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDE-----------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.++|+++.+...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999884 3332 22334577889999999999999999854333236889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHH
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
.|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999997 3444 68899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005000 572 ELRQMILDR 580 (720)
Q Consensus 572 ~~~~~m~~~ 580 (720)
+.++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=175.79 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcC-------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 005000 148 SSVFVQNALISTYCLCGEVDMARGIFDVS-------YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220 (720)
Q Consensus 148 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 220 (720)
.-..+||+||++||++|++++|.++|++| ..||++|||+||.||++.|++++|+++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34568999999999999999999999764 36899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCc-hHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHh
Q 005000 221 LVLSACAKLKDL-DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-----DVISWTAIVTGYIN 294 (720)
Q Consensus 221 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 294 (720)
++|.++++.|+. +.|.+++++|.+.|+.||..+|+.+++.+.+.+-++...+++..+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999998887776555555554444321 12333445555554
Q ss_pred cC
Q 005000 295 RG 296 (720)
Q Consensus 295 ~g 296 (720)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=172.53 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=116.2
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREML-------RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999998763 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 453 VGVLSACTHTGMV-DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 453 ~~ll~a~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
+++|.++++.|+. ++|.++|++|. ..|+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999985 78999999997 6899999999999998888876666655554433
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1.3e-14 Score=148.59 Aligned_cols=263 Identities=8% Similarity=-0.016 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHH
Q 005000 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332 (720)
Q Consensus 253 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (720)
.+..+...+...|++++|..+|+++.+.+ ..+...|..+...+...|++++|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~A 74 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----------------------------PEREEAWRSLGLTQAENEKDGLA 74 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455566666666666666666543210 11233444444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHH--------------hh-hhhhcC
Q 005000 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL--------------ID-MYCKCG 397 (720)
Q Consensus 333 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l--------------i~-~y~~~g 397 (720)
+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+ .. .+...|
T Consensus 75 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 75 IIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHH
T ss_pred HHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence 55555444432 2233444444444445555555555554444432 1111122221 22 477778
Q ss_pred CHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 005000 398 DVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474 (720)
Q Consensus 398 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (720)
++++|...|+++. ..+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888774 2367788888888888888888888888887753 23456778888888888888888888888
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-------------SIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 475 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..+..++...|++++|...+
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7632 1335677888888888889999888888876 22333 667888888889999999988888
Q ss_pred HHHHhcCC
Q 005000 541 KQILELDP 548 (720)
Q Consensus 541 ~~~~~~~p 548 (720)
+++++..|
T Consensus 310 ~~~l~~~~ 317 (327)
T 3cv0_A 310 AQNVEPFA 317 (327)
T ss_dssp TCCSHHHH
T ss_pred HHHHHhcc
Confidence 77766544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=5.1e-14 Score=152.50 Aligned_cols=235 Identities=9% Similarity=-0.040 Sum_probs=128.5
Q ss_pred cCCHHHHHHHHhhCC---CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005000 295 RGQVDMARQYFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 371 (720)
.|+.++|.+.+++.. ..+..+|..+...|...|++++|+..|++..+.. +-+..++..+...+...+...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~------ 298 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV------ 298 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh------
Confidence 345566666666543 3456678889999999999999999999988753 223444444433332211100
Q ss_pred HHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 448 (720)
.... ...........+..+.|...|+... ..+..+|..+...|...|++++|++.|++.++....|.
T Consensus 299 ---~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 299 ---MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp ---HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred ---hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 0000 0111111222334677888887764 23566788899999999999999999999988644433
Q ss_pred hH--HHHHHHH-HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 449 EV--TYVGVLS-ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 449 ~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
.. .+..+.. .....|+.++|+..|++.. .+.|+....... .+.+.+++++. ...| +..+|..|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 21 2222322 3457899999999999876 345654333222 22333444433 2234 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
...+...|++++|++.++++++++|.+|.+..-++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999998887766554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.2e-13 Score=132.41 Aligned_cols=193 Identities=12% Similarity=0.039 Sum_probs=156.9
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGV 455 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 455 (720)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 55677788899999999999999999998754 36788999999999999999999999999985 454 4678888
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 005000 456 LSACTHT-----------GMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGA 522 (720)
Q Consensus 456 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 522 (720)
..++... |++++|+..|++..+. .| +...+..+..+|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999998732 34 5778889999999999999999999987 22278899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987754
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.9e-13 Score=134.42 Aligned_cols=210 Identities=10% Similarity=0.012 Sum_probs=158.8
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC------C----HHHHHHHHHHHHHc
Q 005000 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK------D----KFTWTAMIVGLAIN 427 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~----~~~~~~li~~~~~~ 427 (720)
+...|+++.|...+..+.+.. .+..++..+...|...|++++|...|++..+. + ...|..+...|...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 333344444444444443333 34455566666666677777777766665321 1 46778888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
|++++|++.|++.... .|+. ..+...|++++|...++.+.. ..+.+...+..+...|.+.|++++|.+.
T Consensus 93 ~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999888874 4553 345566888999999998862 2233567788899999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9987 3334 68889999999999999999999999999999999999999999999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.3e-13 Score=133.90 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=179.8
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--CC----hhHhhH
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK--ND----IFVGNA 388 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~--~~----~~~~~~ 388 (720)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|+++.|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46666777777777777777777777665 56667777777777777777777777776654311 11 467788
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhh
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 467 (720)
+...|.+.|++++|...|++....+.. ...+...|++++|+..++++... .|+ ...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 888888999999999998887532111 23466678889999999998885 344 3577788888999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
|...++++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999987432 345788889999999999999999999887 3444 578899999999999999999999999999
Q ss_pred cC------CCCcchHHHHHhH
Q 005000 546 LD------PDNEAVYVLLCNI 560 (720)
Q Consensus 546 ~~------p~~~~~~~~l~~~ 560 (720)
+. |++...+..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 98 8776666665543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=2e-12 Score=138.60 Aligned_cols=376 Identities=10% Similarity=0.007 Sum_probs=204.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCeeeHHHHHHHHHhCC--
Q 005000 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV---DMARGIFDVSYKDDVVTWNAMFSGYKRVK-- 195 (720)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 195 (720)
+...+.+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|.+.|+...+.+...+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566778888888888887766 334455566666677777 88888888776667777777777555555
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc---hHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 005000 196 ---QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL---DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269 (720)
Q Consensus 196 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 269 (720)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+....+.| +......|..+|...+.++.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6778888888888766432 444444444443332 22333344333333 23344445555555443222
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC
Q 005000 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN---RFREALTLFREMQTSNIRP 346 (720)
Q Consensus 270 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p 346 (720)
..+.+..+++.....++.++..+...|...| +.++|+..|++..+.| .+
T Consensus 160 ---------------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~ 211 (452)
T 3e4b_A 160 ---------------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV 211 (452)
T ss_dssp ---------------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS
T ss_pred ---------------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH
Confidence 2233444444444555556777777777777 7777777777777665 23
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc----CCHHHHHHHHHhccCCCHHHHHHHHH
Q 005000 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC----GDVEKAQRVFREMLRKDKFTWTAMIV 422 (720)
Q Consensus 347 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~ 422 (720)
+...+ ..|..+|... +++++|...|+.....+...+..+..
T Consensus 212 ~a~~~-----------------------------------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 212 TAQRV-----------------------------------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQ 256 (452)
T ss_dssp CHHHH-----------------------------------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHH-----------------------------------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33222 2333333332 56666666666665235555666655
Q ss_pred H-H--HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----ChhhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 005000 423 G-L--AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG-----MVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494 (720)
Q Consensus 423 ~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 494 (720)
. | ...++.++|++.|++..+.| +......+...|. .| ++++|.++|++.. .-++..+..|..+
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 5 3 34677777777777777665 4455555555554 44 7778888776542 4456666667767
Q ss_pred HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh--hc
Q 005000 495 LGR----AGHLNEALEVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA--AC 564 (720)
Q Consensus 495 ~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~ 564 (720)
|.. ..++++|.+.|++.....+......|...|.. .++.++|...++++.+..+.+ ....+..+.. ..
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTP 405 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCH
Confidence 665 33788888888776323344455556665553 458888888888888876543 3334444432 33
Q ss_pred CChhHHHHHHHHHHh
Q 005000 565 NRWDNFRELRQMILD 579 (720)
Q Consensus 565 g~~~~a~~~~~~m~~ 579 (720)
++.++|.++.+.-++
T Consensus 406 ~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 406 AQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666555433
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=5.3e-13 Score=132.80 Aligned_cols=241 Identities=11% Similarity=-0.038 Sum_probs=187.5
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 325 RVNRFREALTLFREMQTSNIR---PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888775321 134566677777888888888888888887764 4467788889999999999999
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 402 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
|...|++..+ .+...|..+...|...|++++|++.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998853 36788999999999999999999999999884 566655555566667889999999999887643
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
. +++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3344444 4777788888999999999886 33332 578889999999999999999999999999998754
Q ss_pred hHHHHHhHhhhcCChhHHHHHH
Q 005000 553 VYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999988765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=9.4e-13 Score=130.83 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005000 285 WTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361 (720)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 361 (720)
+......+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++....+..|+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------- 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH-------------
Confidence 33444555556666666666555432 23345555555555666666666666555542211111
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFS 438 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 438 (720)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+
T Consensus 73 --------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 73 --------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred --------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 011244445555555555555555554421 234455555555555555555555555
Q ss_pred HHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHhC---
Q 005000 439 QMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH---LNEALEVIKNM--- 511 (720)
Q Consensus 439 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~--- 511 (720)
+..+. .|+. ..+..+...+...+++++|.+.|+.+.+.. +.+...+..+...+...|+ +++|...++++
T Consensus 133 ~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 133 KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 55443 2222 333333323333445566666655554221 1224444455555555555 44454444443
Q ss_pred -CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 512 -PMKPN------SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 512 -~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
...|+ ..+|..+...+...|++++|...++++++++|+++.+.-.+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888999999999999999999999999888877776655443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.9e-11 Score=121.55 Aligned_cols=223 Identities=12% Similarity=-0.015 Sum_probs=142.2
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
++.++..+...|...|++++|+..|++..+.+ +... +..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a-----------------------------------~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSG-----------------------------------CFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHH-----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHH-----------------------------------HHHHHH
Confidence 44556666666777777777777777666522 2233 334444
Q ss_pred hhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-
Q 005000 392 MYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI----NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH- 461 (720)
Q Consensus 392 ~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 461 (720)
.|.. .|++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 55566666555555322 45555666666666 666666666666666653 45556666666666
Q ss_pred ---cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005000 462 ---TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNMPMKPNSIVWGALLGACRV----H 530 (720)
Q Consensus 462 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~ 530 (720)
.+++++|..+|++..+ .+ +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6777777777776652 22 44555666666666 77777777777765222355666777777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCC
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRG 581 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 581 (720)
+++++|...++++++.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 778888888887777765 4677777788877 778888888777776654
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=4.1e-12 Score=124.63 Aligned_cols=197 Identities=10% Similarity=-0.024 Sum_probs=158.7
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556777788888888888888888774 2367788888888888999999999998888753 23556777788888
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
...|++++|.++++++.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999988763 22344 5677788888899999999999998886 3334 577888888889999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
...++++++..|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888888899999999999999999988887643
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=3.3e-12 Score=136.93 Aligned_cols=332 Identities=9% Similarity=-0.012 Sum_probs=205.5
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH---HHHHHHHhhcCCCCchhHHHHHHHHHhcC-----CHHH
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM---GFALEIFGNIKNKDVISWTAIVTGYINRG-----QVDM 300 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 300 (720)
.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+ +.++
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 344444444444444433 122222333344444444 55555555554444444555554343333 5566
Q ss_pred HHHHHhhCCCC-CccchHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHH
Q 005000 301 ARQYFDQMPER-DYVLWTAMIDGYLRVNRFR---EALTLFREMQTSNIRPDEFTIVSILTACANLG----ALELGEWVKT 372 (720)
Q Consensus 301 A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~~ 372 (720)
|.+.|++..++ +...+..|...|...+..+ ++.+.+......|. |. ....+...+...+ ..+.+..++.
T Consensus 93 A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~--a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 93 AESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PE--AGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TT--HHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HH--HHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 66666655433 4557777777777665533 35555555555553 22 3333344444444 3444444444
Q ss_pred HHHHcCCCCChhHhhHHhhhhhhcC---CHHHHHHHHHhccCC---CHHHHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 005000 373 YIDKNKVKNDIFVGNALIDMYCKCG---DVEKAQRVFREMLRK---DKFTWTAMIVGLAIN----GHGDKSLDMFSQMLR 442 (720)
Q Consensus 373 ~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~ 442 (720)
... ..++..+..|..+|.+.| +.++|.+.|+...+. +...+..+...|... ++.++|++.|++..
T Consensus 170 ~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 170 AAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 333 233447888999999999 899999999987543 444556777777554 68999999999987
Q ss_pred CCCCCChHHHHHHHHH-H--HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHhCCCC
Q 005000 443 ASIIPDEVTYVGVLSA-C--THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG-----HLNEALEVIKNMPMK 514 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~eA~~~~~~~~~~ 514 (720)
.| +...+..+... + ...+++++|.++|++.. +.| +...+..|..+|. .| ++++|.+.|++.. .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 34455555555 3 56899999999999986 444 6677778888887 55 9999999999998 5
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCCC
Q 005000 515 PNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 515 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 582 (720)
.++..+..|...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|...++...+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 578888888877766 34999999999999875 456789999999985 4589999999999988764
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=7.1e-12 Score=120.20 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=155.6
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566777888888888888888888764 2356788888888888888888888888888753 2355677778888
Q ss_pred HHhc-CChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005000 459 CTHT-GMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 459 ~~~~-g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 534 (720)
+... |++++|...++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 889999988888863 22333 3567788888888899999998888876 3334 5778888888888999999
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 535 MAEMAAKQILELDP-DNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 535 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|...++++++..| +++..+..++.++...|+.++|...++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998888 88888888888888899999998888887653
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=2e-11 Score=121.42 Aligned_cols=226 Identities=10% Similarity=-0.004 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CccchHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005000 281 DVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRPDEFTIVSIL 355 (720)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 355 (720)
+..++..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l- 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL- 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH-
Confidence 5677888899999999999999999987655 56678888899999 999999999999887764 33444333
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----
Q 005000 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI---- 426 (720)
Q Consensus 356 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---- 426 (720)
..+|.. .+++++|...|++..+. +..++..+...|..
T Consensus 81 ----------------------------------g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 ----------------------------------GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ----------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ----------------------------------HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 334444 55566666665555332 45566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----c
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----A 498 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~ 498 (720)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+ . .+...+..+..+|.+ .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 777777777777777754 44556666666766 7888888888887763 2 245667778888888 8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 005000 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 499 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+++++|.+.+++.-...+...+..+...+.. .+++++|...++++++++|+++
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888888888876212236777888888888 8999999999999999988753
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.2e-12 Score=125.62 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=142.1
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
....+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566777788888888888888888753 356788888888888888999998888888753 2355677778888
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999888886432 345677888888888999999999888886 3333 677888888888899999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999988888888889999999999999999988888663
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=1.1e-11 Score=128.78 Aligned_cols=243 Identities=14% Similarity=0.085 Sum_probs=185.2
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA-LELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
..|+.+...+.+.|++++|+..|++.+... +-+...+..+..++...|+ ++.|...+..+++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467778888888888999999998888753 3345666777777777885 888888888887765 4467788888888
Q ss_pred hhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh-cCChhh
Q 005000 393 YCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTH-TGMVDE 467 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~~ 467 (720)
|.+.|++++|+..|+++.. .+...|..+...+...|++++|+..|+++++. .| +...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8888999999988888753 36778888888888889999999999998885 34 45678888888887 565577
Q ss_pred H-----HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 005000 468 G-----REYFADMTIQHGIEP-NEAHYGCMVDLLGRAG--HLNEALEVIKNMPMKP-NSIVWGALLGACRVHR------- 531 (720)
Q Consensus 468 a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 531 (720)
| +..|++..+ +.| +...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 477777653 234 4667888888888887 5888888888775555 5667788888877763
Q ss_pred --CHHHHHHHHHHH-HhcCCCCcchHHHHHhHhhh
Q 005000 532 --DAEMAEMAAKQI-LELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 532 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 563 (720)
.+++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258889999998 88899888787777766543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=2.6e-11 Score=120.32 Aligned_cols=239 Identities=11% Similarity=0.080 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc----chHHHHH
Q 005000 251 LILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE--RDYV----LWTAMID 321 (720)
Q Consensus 251 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 321 (720)
..........+...|++++|...|++..+ .+...|..+...|...|++++|...|++..+ .+.. +|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34455677889999999999999998754 3566899999999999999999999998755 2333 3888999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
.|...|++++|+..|++..+.. +.+..++..+...|.+.|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999888632 2344567788888999999999
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC---hhhHHHHHHH
Q 005000 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGM---VDEGREYFAD 474 (720)
Q Consensus 402 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 474 (720)
|...|++..+ .+...|..+...+...+++++|++.|+++.+. .|+ ...+..+..++...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 9999998864 35677777773444456999999999999885 444 5677777788888888 8889999998
Q ss_pred HHHHcCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 475 MTIQHGIEPN------EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 475 m~~~~~~~p~------~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
+.+...-.|+ ...|..+...|.+.|++++|.+.++++ ...| +...+..+....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 8755433444 267888999999999999999999987 4556 455555544433
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=3.9e-12 Score=123.80 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=141.3
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
....|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------KEDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHH
Confidence 44566677777777777777777777776532 223344455556
Q ss_pred hhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 6666666666666666553 2356677777777788888888888888877753 33456777777888888888888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887633 2345677888888899999999999998886 3333 6788999999999999999999999999999
Q ss_pred CCCCcchHHHHHhHhhhcC
Q 005000 547 DPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g 565 (720)
+|+++..+..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999888888776654443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=2.9e-11 Score=118.46 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=155.1
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 4567777777788888888888887776542 2233445566666
Q ss_pred hhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhH
Q 005000 393 YCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 468 (720)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 667777777777776653 235667777788888888888888888888774345543 5677778888889999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++++.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99998886432 335778888999999999999999999887 4444 6778888888999999999999999999999
Q ss_pred CCCCcchHHH
Q 005000 547 DPDNEAVYVL 556 (720)
Q Consensus 547 ~p~~~~~~~~ 556 (720)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9998765443
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=1.6e-12 Score=137.81 Aligned_cols=263 Identities=10% Similarity=-0.023 Sum_probs=184.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----C-CCCChhHhh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDE----FTIVSILTACANLGALELGEWVKTYIDKN----K-VKNDIFVGN 387 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~ 387 (720)
..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|+++.|...+..+.+. + .+....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344555666666666666666666542 1122 24555555566666666666666555432 1 122345667
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCC---------CHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRK---------DKFTWTAMIVGLAINGH-----------------GDKSLDMFSQML 441 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 441 (720)
.+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7788888888888888888776321 23467778888888888 888888888765
Q ss_pred HC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005000 442 RA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKNM- 511 (720)
Q Consensus 442 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~- 511 (720)
+. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11122 246777888889999999999999887632211112 237788899999999999999999876
Q ss_pred C----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 512 P----MKP---NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 512 ~----~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
. ... ...++..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 111 25677888899999999999999999999875432 3488899999999999999999999886
Q ss_pred hC
Q 005000 579 DR 580 (720)
Q Consensus 579 ~~ 580 (720)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=4.2e-12 Score=134.05 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=179.6
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhH
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPD----EFTIVSILTACANLGALELGEWVKTYIDKN----KVK-NDIFV 385 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~ 385 (720)
.+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34445555666666666666666665542 112 234445555566666666666665554332 111 12445
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGH--------------------GDKSLDM 436 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 436 (720)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66777788888888888888876632 12 3467777888888888 8888888
Q ss_pred HHHHHHC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHH
Q 005000 437 FSQMLRA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 437 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876542 11122 246777778888899999999998887633221222 34777888889999999999998
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHH
Q 005000 508 IKNM----PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 508 ~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876 11112 4577888888999999999999999998875432 55788899999999999999999
Q ss_pred HHHHHh
Q 005000 574 RQMILD 579 (720)
Q Consensus 574 ~~~m~~ 579 (720)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=4.3e-11 Score=114.69 Aligned_cols=208 Identities=15% Similarity=0.077 Sum_probs=150.9
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
+...|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34456666666666666666666666665532 223345556666
Q ss_pred hhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChh
Q 005000 392 MYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAIN-GHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (720)
.|...|++++|.+.|+++. ..+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6677777777777776653 23566777788888888 888888888888887433444 356777888888899999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK--PNSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
+|...++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999998886332 234777888889999999999999998887 222 35667777777889999999999999999
Q ss_pred HhcCCCCcchHHHH
Q 005000 544 LELDPDNEAVYVLL 557 (720)
Q Consensus 544 ~~~~p~~~~~~~~l 557 (720)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999987766544
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=1.3e-11 Score=114.48 Aligned_cols=165 Identities=11% Similarity=0.099 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 491 (720)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4566777777788888888888888887774 343 456777777888888888888888877532 23345666777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhH
Q 005000 492 VDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (720)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77888888888888888776 3344 577888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 005000 570 FRELRQMILDRG 581 (720)
Q Consensus 570 a~~~~~~m~~~~ 581 (720)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999988887643
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=1.5e-11 Score=127.84 Aligned_cols=225 Identities=10% Similarity=0.061 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC-HHHHHHHHHhccC---CCHHHHHHHHHHH
Q 005000 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD-VEKAQRVFREMLR---KDKFTWTAMIVGL 424 (720)
Q Consensus 349 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 424 (720)
..+..+...+...|+++.|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++... .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556667778899999999999999876 5568889999999999997 9999999999853 4788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLN 502 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 502 (720)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+++.+.. +-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 44 45788999999999999999999999997431 3367889999999999 67667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC--------
Q 005000 503 EA-----LEVIKNM-PMKP-NSIVWGALLGACRVHR--DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN-------- 565 (720)
Q Consensus 503 eA-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 565 (720)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 4556 6789999999999888 689999999998 999999999999999999975
Q ss_pred -ChhHHHHHHHHH-Hh
Q 005000 566 -RWDNFRELRQMI-LD 579 (720)
Q Consensus 566 -~~~~a~~~~~~m-~~ 579 (720)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=5.5e-12 Score=129.04 Aligned_cols=262 Identities=11% Similarity=0.005 Sum_probs=181.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhHhhH
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPD----EFTIVSILTACANLGALELGEWVKTYIDKN----KVK-NDIFVGNA 388 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~ 388 (720)
.....+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445556666666666666665542 112 234445555556666666666665554332 111 12456677
Q ss_pred HhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGH--------------------GDKSLDMFSQ 439 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~ 439 (720)
+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888888888888888877632 22 3367778888888888 8888888887
Q ss_pred HHHC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 440 MLRA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 440 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|.+.|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11121 246777788888999999999999887532211111 34778888999999999999999887
Q ss_pred C-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 511 M-P---MKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 511 ~-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
. . ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 1 1112 5577888889999999999999999999875442 34788999999999999999999998
Q ss_pred HHhC
Q 005000 577 ILDR 580 (720)
Q Consensus 577 m~~~ 580 (720)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=8.4e-10 Score=122.34 Aligned_cols=433 Identities=8% Similarity=-0.002 Sum_probs=284.5
Q ss_pred CchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHH
Q 005000 95 SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE---VDMARG 171 (720)
Q Consensus 95 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~ 171 (720)
...+.+..|++-+..+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666677776655 357889999999998889999999999999985 56677888888888888888 999999
Q ss_pred HHhcCCC-----CCeeeHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHhc-------
Q 005000 172 IFDVSYK-----DDVVTWNAMFSGYKRVKQF--------DETRKLFGEMER-KGV-LPT-SVTIVLVLSACAK------- 228 (720)
Q Consensus 172 ~f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~-~~t~~~ll~~~~~------- 228 (720)
+|++... +++..|...+.-..+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9986533 6677888877766555543 233467766543 466 554 3455555554332
Q ss_pred --CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 229 --LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 229 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
.++++.++.++..++......-..+|......-...+. ..+.+++.+ ....++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 23456677788777753222222333322221111111 011111111 0112222333322
Q ss_pred h-------CCC--------------C--C------ccchHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHH
Q 005000 307 Q-------MPE--------------R--D------YVLWTAMIDGYLRVN-------RFREALTLFREMQTSNIRPDEFT 350 (720)
Q Consensus 307 ~-------~~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t 350 (720)
. +.. | + ...|...+.---..+ ..+.+..+|++.+.. .+-+...
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHH
Confidence 1 111 0 0 123555554433332 123455677777764 2335566
Q ss_pred HHHHHHHHhccCcHHHHH-HHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC-------------CC---
Q 005000 351 IVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-------------KD--- 413 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~--- 413 (720)
+.....-+...|+.+.|. .+++.++.. .+.+...+-.++..+.+.|+++.|.++|+.+.. |+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 666666666778888886 999998874 356677788889999999999999999998753 21
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChhhHHHHHHHHHHHcCCCc
Q 005000 414 ---------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT-GMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 414 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p 483 (720)
...|...+....+.|+.+.|..+|.+.++.-..+....|...+..-.+. ++++.|..+|+...+.. +.
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~ 502 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--AT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TT
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CC
Confidence 2368888888888999999999999998861112233444333333344 45999999999998654 34
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+...+...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5667788899999999999999999997 2223 356899999999999999999999999999999875
No 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=2.5e-11 Score=116.03 Aligned_cols=192 Identities=17% Similarity=0.053 Sum_probs=80.3
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|+++.|...+..+++.. +.+...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3345555555555556666665555555432 2233333333344444444444444444444332 2233334444444
Q ss_pred hhhc-----------CCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 393 YCKC-----------GDVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 393 y~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
|.+. |++++|...|++..+ | +...|..+...+...|++++|+..|++.++.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 4444 455555555544421 1 33444444444555555555555555544443 334444444444
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
+...|++++|+..|+++.+. -+.+...+..+..+|.+.|++++|.+.+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555555555444321 111233444444444444444444444443
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=9e-12 Score=123.79 Aligned_cols=237 Identities=11% Similarity=-0.079 Sum_probs=114.8
Q ss_pred CCchHHHHHHHHhHhCCCC---CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 005000 94 DSHKNGVLIYLDMLKSDVR---PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170 (720)
Q Consensus 94 g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 170 (720)
|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4444555555554443210 022334444444445555555555555555433 223445555555555555555555
Q ss_pred HHHhcCC---CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCC
Q 005000 171 GIFDVSY---KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247 (720)
Q Consensus 171 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 247 (720)
+.|+... ..+..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|+++.|...+....+...
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 5555432 224455666666666666666666666666553 34433333344444555666666666666555422
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHH
Q 005000 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKD-------VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320 (720)
Q Consensus 248 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 320 (720)
++...+ .++..+...++.++|...+++....+ ...|..+...|.+.|++++|...|++....++..+....
T Consensus 176 -~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 253 (275)
T 1xnf_A 176 -KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253 (275)
T ss_dssp -CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred -cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHH
Confidence 222222 25555666666666666666655432 233444444444444444444444444433333333334
Q ss_pred HHHHhcCChhHHHHH
Q 005000 321 DGYLRVNRFREALTL 335 (720)
Q Consensus 321 ~~~~~~g~~~~A~~~ 335 (720)
.++...|++++|++.
T Consensus 254 ~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 254 YALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhHHH
Confidence 444444444444433
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=2.9e-11 Score=127.53 Aligned_cols=294 Identities=12% Similarity=0.039 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005000 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPN---LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296 (720)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 296 (720)
......+...|++++|...++.+++...... ..++..+...|...|++++|...|++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------- 73 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------------- 73 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------
Confidence 3333444455555555555555555422110 234555666666777777776666542
Q ss_pred CHHHHHHHHhhCCCC--CccchHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005000 297 QVDMARQYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALELGEWVKTY 373 (720)
Q Consensus 297 ~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 373 (720)
..+......+ ...+|..+...|...|++++|+..+++...... .++...
T Consensus 74 -----l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------- 125 (406)
T 3sf4_A 74 -----LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG----------------------- 125 (406)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------------------
T ss_pred -----HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-----------------------
Confidence 1122222111 134567777788888888888888877654210 011000
Q ss_pred HHHcCCCCChhHhhHHhhhhhhcCC--------------------HHHHHHHHHhccC-----C----CHHHHHHHHHHH
Q 005000 374 IDKNKVKNDIFVGNALIDMYCKCGD--------------------VEKAQRVFREMLR-----K----DKFTWTAMIVGL 424 (720)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~ 424 (720)
...++..+...|...|+ +++|...|++... . ...+|..+...|
T Consensus 126 --------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 126 --------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 01123333334444444 4444444443311 1 133566677777
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASI-IPD----EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLL 495 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 495 (720)
...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++......-.++ ...+..+...|
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 778888888888877665210 112 136777777888888888888888876532211111 55777888899
Q ss_pred HhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHhHh
Q 005000 496 GRAGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDP------DNEAVYVLLCNIY 561 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~ 561 (720)
.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 9999999999988876 11122 55778888999999999999999999988733 2356778888898
Q ss_pred hhcCChh
Q 005000 562 AACNRWD 568 (720)
Q Consensus 562 ~~~g~~~ 568 (720)
...|+..
T Consensus 358 ~~~g~~~ 364 (406)
T 3sf4_A 358 MVLGLSY 364 (406)
T ss_dssp HHHHTTS
T ss_pred HHhhHhH
Confidence 8888764
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=5.9e-12 Score=135.85 Aligned_cols=207 Identities=10% Similarity=-0.057 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCH-HHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV-EKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 365 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
+.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 34677788888888999999 999999988742 35778999999999999999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHHhc---------CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--------CCHHH
Q 005000 441 LRASIIPDEVTYVGVLSACTHT---------GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA--------GHLNE 503 (720)
Q Consensus 441 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~e 503 (720)
.+. .|+...+..+..++... |++++|.+.|+++.+.. +.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 985 57778888888899999 99999999999987432 33578889999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 504 ALEVIKNM-PMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 504 A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
|++.|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999987 4455 7889999999999999999999999999999999999999999999999999999976543
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=6.2e-11 Score=109.95 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=143.7
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567889999999999999999999998753 377899999999999999999999999998853 2244567777788
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999988632 2345778889999999999999999999987 4555 688999999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 005000 537 EMAAKQILELDPDNE 551 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~ 551 (720)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999863
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=3.9e-11 Score=134.64 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGC 490 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 490 (720)
+..+|+.+...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|++.|++..+ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3557777888888888888888888888774 455 46778888888888888888888888763 234 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888899999999999988886 5556 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005000 569 NFRELRQMILD 579 (720)
Q Consensus 569 ~a~~~~~~m~~ 579 (720)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=1.1e-10 Score=123.70 Aligned_cols=269 Identities=14% Similarity=0.082 Sum_probs=157.9
Q ss_pred HHhcCCCchHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 225 ACAKLKDLDVGKRAHRYVKECKIVPNL----ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
.+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------------- 113 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL---------------------- 113 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------
Confidence 344445555555555555444221 11 345556666667777777776666422
Q ss_pred HHHHHhhCCCC--CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005000 301 ARQYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEWVKTYIDKN 377 (720)
Q Consensus 301 A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 377 (720)
++.+..... ...+|..+...|...|++++|+..|++....... .+.
T Consensus 114 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------- 162 (411)
T 4a1s_A 114 --TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----------------------------- 162 (411)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------------------
T ss_pred --HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-----------------------------
Confidence 222222111 2345667777778888888888887776542100 000
Q ss_pred CCCCChhHhhHHhhhhhhcCC-----------------HHHHHHHHHhccC-------C--CHHHHHHHHHHHHHcCChH
Q 005000 378 KVKNDIFVGNALIDMYCKCGD-----------------VEKAQRVFREMLR-------K--DKFTWTAMIVGLAINGHGD 431 (720)
Q Consensus 378 ~~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~ 431 (720)
+....++..+...|...|+ +++|.+.|++..+ + ....|..+...|...|+++
T Consensus 163 --~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 163 --LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 0011223333444444444 4444444443311 0 2235666667777777777
Q ss_pred HHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCCHH
Q 005000 432 KSLDMFSQMLRASI-IPD----EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE----PNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 432 ~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~ 502 (720)
+|++.|++..+... .++ ..++..+...+...|++++|...+++......-. .....+..+...|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777655211 011 1266677778888888888888887765322111 12467778888889999999
Q ss_pred HHHHHHHhC-CC------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 503 EALEVIKNM-PM------KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 503 eA~~~~~~~-~~------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+|.+.+++. .. .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 998888876 11 11 2447778888999999999999999999988764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=1.2e-09 Score=110.60 Aligned_cols=219 Identities=9% Similarity=0.013 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCcH-------HHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 330 REALTLFREMQTSNIRPDEFTIVSILTACA-------NLGAL-------ELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
++|+..|++..... +-+...+......+. ..|+. +.|..++..+++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 234444444444443 23553 7777777777773224456678888888888
Q ss_pred cCCHHHHHHHHHhccC--C-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCChhhHHH
Q 005000 396 CGDVEKAQRVFREMLR--K-DKF-TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT-HTGMVDEGRE 470 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 470 (720)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888753 2 333 78888888888888888888888888753 233344544333322 3688888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-P---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
+|+...+.. +.+...|..+++.+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888876443 235677888888888888888888888887 2 344 46688888888888888888888888888
Q ss_pred hcCCCCcc
Q 005000 545 ELDPDNEA 552 (720)
Q Consensus 545 ~~~p~~~~ 552 (720)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=6.3e-11 Score=119.86 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC-------C
Q 005000 347 DEFTIVSILTACANLGALELGEWVKTYIDKN-------KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-------K 412 (720)
Q Consensus 347 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~ 412 (720)
+..++..+...+...|+++.|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777888889999999888887763 2334466778888888899999999888887642 1
Q ss_pred ----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHc--
Q 005000 413 ----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA------SIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQH-- 479 (720)
Q Consensus 413 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-- 479 (720)
...+|..+...|...|++++|++.|+++.+. +-.|+. ..+..+...+...|++++|.++++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2456778888888899999999999888764 222332 467777788888899999999988876421
Q ss_pred ---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 005000 480 ---GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMP----------MKPN-------SIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 480 ---~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~----------~~p~-------~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
+..| ....+..+...|.+.|++++|.+.++++- ..|. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34567788888899999999988887761 1111 1112222233445555666667
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++++....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777888889999999999999999999999998765
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=2.4e-10 Score=116.67 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASI-IPD----EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EA 486 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 486 (720)
.+..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555666666666666666666544210 011 125666666777777777777777766432111111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PM---KPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6677778888888888888887765 11 111 446777888889999999999999999887664
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=2.9e-11 Score=122.37 Aligned_cols=235 Identities=11% Similarity=0.048 Sum_probs=145.3
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc------C-CC
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTS-------NIRPDEFTIVSILTACANLGALELGEWVKTYIDKN------K-VK 380 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~-~~ 380 (720)
+|..+...|...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+.+. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555556666666666666666665542 11222334455555566666666666666655543 1 12
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA------ 443 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 443 (720)
....++..+...|...|++++|...|++..+. ....|..+...+...|++++|++.|+++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23556677788888888888888888776421 2446777888888889999999998888764
Q ss_pred CCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHc------CCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 444 SIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQH------GIEP-------NEAHYGCMVDLLGRAGHLNEALEVIK 509 (720)
Q Consensus 444 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p-------~~~~~~~li~~~~~~g~~~eA~~~~~ 509 (720)
+..|+. .++..+...+...|++++|..+++++.+.. ...+ ....+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 223333 467778888889999999999998876321 1111 12233334444556666667777777
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 510 NMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 510 ~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 663 334 4668889999999999999999999999998775
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=2.1e-10 Score=110.54 Aligned_cols=188 Identities=12% Similarity=-0.024 Sum_probs=94.1
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR----KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLS 457 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 457 (720)
+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|++.|++..+. .|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34555555555666666666666655421 44445555555555566666666666655553 3332 34555555
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNE-----AHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN---SIVWGALLGACR 528 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~ 528 (720)
++...|++++|...+++..+...-.+.. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555566666666665554221111111 33445555555555555555555554 33443 234444444443
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
. .+...++++..+.+.++..|.. ......+.+++|...+++..+
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 2 2333344445554444333222 223334455888888887765
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=5.1e-10 Score=107.79 Aligned_cols=205 Identities=10% Similarity=0.055 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHH
Q 005000 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIV 422 (720)
Q Consensus 346 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 422 (720)
.|...+......+...|+++.|...+..+++...+++...+..+...|.+.|++++|...|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567777888889999999999999999999875477777777999999999999999999988533 5678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc---HHHHHHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPD-E-------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN---EAHYGCM 491 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 491 (720)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|++.|+++. .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999985 444 3 357777788899999999999999885 45665 5678888
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 492 VDLLGRAGHL--NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 492 i~~~~~~g~~--~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888776654 3332221 12344444433 345567899999999999999999888887776654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=2e-10 Score=123.82 Aligned_cols=178 Identities=13% Similarity=0.081 Sum_probs=157.6
Q ss_pred CHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHH
Q 005000 398 DVEKAQRVFREML---RKDKFTWTAMIVGLAINGHG-DKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 398 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
.++++...+++.. ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3666777776653 23678899999999999999 9999999999985 444 578999999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCH
Q 005000 473 ADMTIQHGIEPNEAHYGCMVDLLGRA---------GHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH--------RDA 533 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~ 533 (720)
++.. .+.|+...+..+...|.+. |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9986 4568888999999999999 9999999999997 4455 688999999999998 999
Q ss_pred HHHHHHHHHHHhcCC---CCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 534 EMAEMAAKQILELDP---DNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++|...++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998764
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=4.3e-10 Score=117.84 Aligned_cols=221 Identities=8% Similarity=-0.045 Sum_probs=130.5
Q ss_pred HhccCcHHHHHHHHHHHHHc----CCCC-ChhHhhHHhhhhhhcCCHHHHHHHHHhccC-----C-----CHHHHHHHHH
Q 005000 358 CANLGALELGEWVKTYIDKN----KVKN-DIFVGNALIDMYCKCGDVEKAQRVFREMLR-----K-----DKFTWTAMIV 422 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 422 (720)
+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 33445555555555544432 1011 134455666666666666666666665521 1 1235666667
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHH---cCC-CccHHHHHHHHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASII-PDE----VTYVGVLSACTHTGMVDEGREYFADMTIQ---HGI-EPNEAHYGCMVD 493 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~li~ 493 (720)
.|...|++++|++.|++..+.... ++. .++..+...+...|++++|.+.+++..+- .+. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 777777777777777776542111 111 35666777777777777777777776531 122 223556777777
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 494 LLGRAGHLNEALEVIKNM-PM-----KPN-SIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
.|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 777778877777777765 11 121 2234555666777777 56666666554 2233444567778888888
Q ss_pred cCChhHHHHHHHHHHh
Q 005000 564 CNRWDNFRELRQMILD 579 (720)
Q Consensus 564 ~g~~~~a~~~~~~m~~ 579 (720)
.|++++|.+.+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888777754
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=4.7e-09 Score=109.40 Aligned_cols=262 Identities=11% Similarity=0.007 Sum_probs=179.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----hhHhhH
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEF----TIVSILTACANLGALELGEWVKTYIDKNKVK-ND----IFVGNA 388 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~----~~~~~~ 388 (720)
.....+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+.... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445566777777777777766543222222 3344445566677777777777665542111 11 223566
Q ss_pred HhhhhhhcCCHHHHHHHHHhccC----------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--ChHHHH
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLR----------K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII--P--DEVTYV 453 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 453 (720)
+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 77888889999999988887632 1 1235666778889999999999999998764322 1 124677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHH
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-----CMVDLLGRAGHLNEALEVIKNMP-MKPN-----SIVWGA 522 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~~~~ 522 (720)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 778888999999999999998864322111111121 23455789999999999999872 2221 335677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888999999999999999998764321 23677889999999999999999888765
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=3.1e-10 Score=104.80 Aligned_cols=162 Identities=16% Similarity=0.036 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 495 (720)
.|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444555555666666666665554431 223445555666666666666666666666532 123455666666777
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 496 GRAGHLNEALEVIKNM-PM-KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
...|++++|.+.++++ .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777665 22 235667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhC
Q 005000 574 RQMILDR 580 (720)
Q Consensus 574 ~~~m~~~ 580 (720)
++.+.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8777653
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=2.8e-09 Score=111.63 Aligned_cols=165 Identities=10% Similarity=0.098 Sum_probs=126.5
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-h
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRA----SIIPD-E 449 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 449 (720)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4566777888888888888888877642 12 247788888999999999999999988762 23233 3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQH---GIEPNEAHYGCMVDLLGRAGH---LNEALEVIKNMPMKPN-SIVWGA 522 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~~~~p~-~~~~~~ 522 (720)
.++..+...+...|++++|...+++..+.. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 578888889999999999999998876322 112223346678888999999 9999999999865553 446778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
+...+...|++++|...+++++++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987643
No 78
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=1.5e-09 Score=109.89 Aligned_cols=212 Identities=8% Similarity=0.022 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHcCCCCChhHhhHHhhhhh-------hcCCH-------HHHHHHHHhccC---C-CHHHHHHHHHHHHH
Q 005000 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYC-------KCGDV-------EKAQRVFREMLR---K-DKFTWTAMIVGLAI 426 (720)
Q Consensus 365 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 426 (720)
+.|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777777653 566778888887776 35885 999999998754 2 56789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-H-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH-hcCCHHH
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDE-V-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG-RAGHLNE 503 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~e 503 (720)
.|++++|.++|++.++. .|+. . .|..+...+.+.|++++|..+|++..+ . .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~-~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D-ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-S-TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 5654 3 788899999999999999999999872 2 1334555554444432 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL---DPD-NEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
|.++|++. ...| +...|..++..+...|++++|..+++++++. .|+ ....+..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3334 6889999999999999999999999999996 553 5678888999999999999999999998
Q ss_pred HhCC
Q 005000 578 LDRG 581 (720)
Q Consensus 578 ~~~~ 581 (720)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7654
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=2.4e-08 Score=110.73 Aligned_cols=430 Identities=8% Similarity=0.022 Sum_probs=284.2
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCC---hhHHHHHHHHHH
Q 005000 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQ---FDETRKLFGEME 208 (720)
Q Consensus 135 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~ 208 (720)
...++..+... +.|...|..++..+.+.+.++.|+.+|+.+.. .....|...+..-.+.|+ ++.+..+|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 33445555544 46899999999999999999999999997754 355678888888888898 999999999988
Q ss_pred HCC-CCCCHhhHHHHHHHHhcCCCc--------hHHHHHHHHHHH-cCC-CCC-hHHHHHHHHHHHh---------cCCH
Q 005000 209 RKG-VLPTSVTIVLVLSACAKLKDL--------DVGKRAHRYVKE-CKI-VPN-LILENALTDMYAA---------CGEM 267 (720)
Q Consensus 209 ~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~~ 267 (720)
... ..|+...|..-+....+.++. +...++|+.++. .|. .++ ..+|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 763 247887888777766555543 334577777665 465 553 5688888776543 3456
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHH--CCCC
Q 005000 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT--SNIR 345 (720)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~ 345 (720)
+.+.++|++...-....+..+-..|.. ++.. + +..+-..++.- ...+++.|...+.++.. .++.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~---fe~~---~------~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQ---WEQD---V------NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHH---HHHH---H------CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHH---HHHh---c------CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHh
Confidence 778888888775222112222222211 0000 0 11111111111 11234445555544321 1111
Q ss_pred ---------------C-----CH---HHHHHHHHHHhccC-------cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 346 ---------------P-----DE---FTIVSILTACANLG-------ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 346 ---------------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
| +. ..|...+.---..+ ..+....+++.++... +.+..+|-..+..+.+
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 1 11 12222222111111 1234456677777653 5567788888888888
Q ss_pred cCCHHHHH-HHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------hH
Q 005000 396 CGDVEKAQ-RVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI---------IPD------------EV 450 (720)
Q Consensus 396 ~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~ 450 (720)
.|+.++|. .+|+.... .+...|-..+....+.|+.++|.++|++++.... .|+ ..
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 99999996 99988743 3666788888889999999999999999886410 142 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG-HLNEALEVIKNM--PMKPNSIVWGALLGAC 527 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~~--~~~p~~~~~~~ll~~~ 527 (720)
.|...+....+.|..+.|+.+|..+.+..+ .+....|...+.+-.+.| +.+.|.++|+.. ..+.+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 577777777888999999999999874311 123445554555555655 489999999887 2333677888999988
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 528 RVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
...|+.+.|..+|+++++..|+ ....+......-.+.|+.+.+.++.+++.+.-
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999999998873 44567777777788999999999999998754
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=3e-09 Score=111.20 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHH---cCCCccHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQ---HGIEPNEAH 487 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~~~~ 487 (720)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|.+.|++.... .+.+.....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4444555555555555555555554431 10110 124455555556666666666666555420 022222445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM----PM--KPN-SIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 555666666666666666666554 11 122 2233334344445555 44444444441 1122233455566
Q ss_pred HhHhhhcCChhHHHHHHHHHH
Q 005000 558 CNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+.+|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666777777777666666554
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=1.4e-09 Score=100.21 Aligned_cols=169 Identities=14% Similarity=0.026 Sum_probs=143.7
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788899999999999999988643 67889999999999999999999999998863 33567888888899
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAE 537 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 537 (720)
...|++++|.++++++... .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998743 2456788889999999999999999999987 3334 6788999999999999999999
Q ss_pred HHHHHHHhcCCCCcchH
Q 005000 538 MAAKQILELDPDNEAVY 554 (720)
Q Consensus 538 ~~~~~~~~~~p~~~~~~ 554 (720)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999876543
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=1.4e-09 Score=107.98 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=145.3
Q ss_pred ccCcHHHHHHHHHHHHH-------cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----------CHHHHHHHH
Q 005000 360 NLGALELGEWVKTYIDK-------NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----------DKFTWTAMI 421 (720)
Q Consensus 360 ~~~~~~~a~~i~~~~~~-------~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 421 (720)
..|+++.|...+..+.+ ...+....++..+...|...|++++|...|++..+. ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 232334667788888899999999999888876421 345778888
Q ss_pred HHHHHcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHc-----CCCc-cHHHH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRA------SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQH-----GIEP-NEAHY 488 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~ 488 (720)
..|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++++.... +-.| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888899999999999887764 11233 3567778888888899999999988876431 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCc
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-P---------MKP-NSIVWGALLGACRVHRD------AEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~---------~~p-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~ 551 (720)
..+...|.+.|++++|.+.++++ . ..+ ....|..+.......+. +..+...++......|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 78888888999999998888776 1 122 22334444333333322 2333333333333345566
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7889999999999999999999998765
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=4.8e-09 Score=109.63 Aligned_cols=300 Identities=8% Similarity=0.027 Sum_probs=214.6
Q ss_pred CCCChHHHHHHHHHH--HhcCCHHHHHHHHhhcCC------C--CchhHHHHHHHH--H---hcCCHH---------HHH
Q 005000 247 IVPNLILENALTDMY--AACGEMGFALEIFGNIKN------K--DVISWTAIVTGY--I---NRGQVD---------MAR 302 (720)
Q Consensus 247 ~~~~~~~~~~li~~y--~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~--~---~~g~~~---------~A~ 302 (720)
..|+..+.+.|-+.| .+.+++++|..+++++.. . ++..|-.++..- . .....+ +..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 356778888888888 899999999999987643 1 233333333321 1 111111 333
Q ss_pred HHHhhCCCC-C-c---cchHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHH
Q 005000 303 QYFDQMPER-D-Y---VLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPD----EFTIVSILTACANLGALELGEWVKT 372 (720)
Q Consensus 303 ~~f~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~i~~ 372 (720)
+..+....+ + . ..|......+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333322222 1 1 1233445567889999999999999876421 133 3466777788899999999999998
Q ss_pred HHHHcCC-----C-CChhHhhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHH
Q 005000 373 YIDKNKV-----K-NDIFVGNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMF 437 (720)
Q Consensus 373 ~~~~~~~-----~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~ 437 (720)
.+.+... . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8765311 1 1245678899999999999999999988743 22 347888899999999999999999
Q ss_pred HHHHH-----CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCC---HHHHHH
Q 005000 438 SQMLR-----ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI---EPNEAHYGCMVDLLGRAGH---LNEALE 506 (720)
Q Consensus 438 ~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~eA~~ 506 (720)
++..+ .. +....++..+...+...|++++|..++++..+...- +.....+..+...|...|+ +++|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 32 222567888899999999999999999998753322 2224556777778888888 999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 507 VIKNMPMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 507 ~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
.+++....|+ ...+..+...+...|++++|...++++++..
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999765443 3456778888999999999999999988753
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=1.2e-07 Score=98.60 Aligned_cols=228 Identities=11% Similarity=-0.034 Sum_probs=111.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhcCCCchHHHHHHHHHHHcCCC-CC----hHHHHHHHH
Q 005000 189 SGYKRVKQFDETRKLFGEMERKGVLPTSV----TIVLVLSACAKLKDLDVGKRAHRYVKECKIV-PN----LILENALTD 259 (720)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 259 (720)
..+...|++++|+..+++........+.. .+..+...+...|+++.|...+....+.... ++ ..+...+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556677777777777665543211211 2333444555666777776666665542111 11 123455666
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CccchHHHHHHHHhcCChhHHHHH
Q 005000 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTL 335 (720)
Q Consensus 260 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 335 (720)
.|...|++++|...+++. .++......+ ....+..+...+...|++++|...
T Consensus 102 ~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 677777777777766642 2222222222 123455666777778888888888
Q ss_pred HHHHHHCCCC--C--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh-hHhh-----HHhhhhhhcCCHHHHHHH
Q 005000 336 FREMQTSNIR--P--DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI-FVGN-----ALIDMYCKCGDVEKAQRV 405 (720)
Q Consensus 336 ~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~-----~li~~y~~~g~~~~A~~~ 405 (720)
+++....... + ...++..+...+...|+++.|...+....+..-.++. ..+. ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8776643211 1 1233444444455555565555555554432111110 0111 122334455555555555
Q ss_pred HHhccCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 406 FREMLRKD-------KFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 406 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
+++....+ ...+..+...+...|++++|...+++.
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55553321 112333344444445555554444443
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.3e-08 Score=98.31 Aligned_cols=205 Identities=11% Similarity=-0.002 Sum_probs=126.8
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-hHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRK---D---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASI-IPD-EVTYV 453 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 453 (720)
+...+-.+...+.+.|++++|...|+.+.+. + ...|..+...|.+.|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555566666667777777776666432 2 44566666666666666666666666666421 112 13444
Q ss_pred HHHHHHHh--------cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005000 454 GVLSACTH--------TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525 (720)
Q Consensus 454 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~ 525 (720)
.+..++.. .|++++|...|+++.+...-.+ .....+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 45555555 6666666666666653321111 1111111110000000 112466778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhhhc----------CChhHHHHHHHHHHhCCCccCCcccEEE
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYAAC----------NRWDNFRELRQMILDRGIKKTPGCSMIE 592 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 592 (720)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++.+.+.. |
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p------ 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P------ 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C------
Confidence 8999999999999999999999985 45888999999877 99999999999987643 2
Q ss_pred ECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHh
Q 005000 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626 (720)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 626 (720)
.+|...++...+..+..++++
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 245567777777777766654
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=4.6e-09 Score=117.92 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=142.1
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVL 456 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 456 (720)
.+..+++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3467788999999999999999999998753 36789999999999999999999999999885 555 46889999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA 533 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 533 (720)
.++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999998873 244 5788999999999999999999999987 5666 578899999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 005000 534 EMAEMAAKQILELDPD 549 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~ 549 (720)
++|.+.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999987543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=5.2e-09 Score=104.94 Aligned_cols=200 Identities=10% Similarity=-0.020 Sum_probs=145.2
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----C----HHHHHHHHHHHHHcCChHHH
Q 005000 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----D----KFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A 433 (720)
+++.|...+..+ ...|...|++++|...|++...- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776655 44677889999999988876421 2 45888999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--hHHHHHHHHHHHhc-CChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHH
Q 005000 434 LDMFSQMLRASI---IPD--EVTYVGVLSACTHT-GMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 434 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~e 503 (720)
+..|++.++... .+. ..++..+..++... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 24788888899996 9999999999988642211111 4568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHhHhh--hcCCh
Q 005000 504 ALEVIKNM-PMKPN---S-----IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV-----YVLLCNIYA--ACNRW 567 (720)
Q Consensus 504 A~~~~~~~-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 567 (720)
|++.+++. ...|+ . ..|..+...+...|++++|...++++++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 23332 1 157778888999999999999999999999985543 344566664 45778
Q ss_pred hHHHHHHHHH
Q 005000 568 DNFRELRQMI 577 (720)
Q Consensus 568 ~~a~~~~~~m 577 (720)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888877544
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=9.3e-09 Score=103.07 Aligned_cols=169 Identities=9% Similarity=-0.037 Sum_probs=109.3
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCC-----C----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC-C----h
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRK-----D----KFTWTAMIVGLAIN-GHGDKSLDMFSQMLRASIIP-D----E 449 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p-~----~ 449 (720)
+++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++.++..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455556666666666666666554321 1 34677777888885 88888888888877631110 1 2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-----
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-----AHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSI----- 518 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~----- 518 (720)
.++..+...+...|++++|+..|++..+...-.+.. ..|..+..+|...|++++|...+++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 467778888888999999999998886322111111 25677788888899999999999887 4555422
Q ss_pred -HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 519 -VWGALLGACR--VHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 519 -~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.+..++.++. ..+++++|...++++.+++|.+...
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 3444556664 4567888888888888888765333
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=5.2e-08 Score=93.36 Aligned_cols=179 Identities=9% Similarity=-0.044 Sum_probs=108.9
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----HHH
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLR--KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV----TYV 453 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 453 (720)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777777777777777643 21 245666677777777777777777777764 23321 233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH-----------
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVW----------- 520 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~----------- 520 (720)
.+..++...|.. .+ ..|..+...+...|++++|...|+++ ...|+ ...+
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 333333321100 00 00001111122234455555555444 22222 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 521 ------GALLGACRVHRDAEMAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 521 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
..+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3455678899999999999999999999976 5788999999999999999999999887654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=1.6e-08 Score=99.48 Aligned_cols=203 Identities=9% Similarity=-0.004 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---hhHhhHHhhhhhhcCCHHHHHHHHHhccC--C----CHHH
Q 005000 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND---IFVGNALIDMYCKCGDVEKAQRVFREMLR--K----DKFT 416 (720)
Q Consensus 346 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 416 (720)
.+...+-.....+.+.|+++.|...+..+++.. +.+ ..++..+...|.+.|++++|...|+...+ | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666777778889999999999999998865 223 56778899999999999999999999853 2 2456
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH
Q 005000 417 WTAMIVGLAI--------NGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487 (720)
Q Consensus 417 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 487 (720)
+..+..++.. .|++++|+..|++.++. .|+.. ....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999985 44432 22111 111111100 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVH----------RDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778899999999999999887 22333 45677777777765 8999999999999999999853
Q ss_pred ---hHHHHHhHhhhcCChhHH
Q 005000 553 ---VYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 553 ---~~~~l~~~~~~~g~~~~a 570 (720)
+...+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 445566666666655543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=7.1e-08 Score=94.93 Aligned_cols=173 Identities=10% Similarity=0.039 Sum_probs=100.6
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 402 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
|...|++... ++..++..+..++...|++++|++++.+.+..+..++. ..+..++..+.+.|+++.|.+.++.|..
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555532 34445555666666677777777777766554432222 4555566667777777777777776642
Q ss_pred HcCCCc-----cHHHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 005000 478 QHGIEP-----NEAHYGCMVDL--LGRAG--HLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL- 546 (720)
Q Consensus 478 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 546 (720)
..| +..+...|..+ ....| ++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23333344433 22223 677777777776 23344223333344666777777777777766654
Q ss_pred ---------CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 547 ---------DPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 547 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+|+++.++..++.+....|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 36676676666666666665 66677766665
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.4e-09 Score=97.00 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=89.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
.|+.++|++.+++.... .|+. ..+..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHH
Confidence 34445555555544332 2222 234445556666666666666666665221 224566667777777777777777
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 506 EVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEM-AAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 506 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
..|++. .+.| +..+|..+...+...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777765 4455 57788888888888888876555 4689999999999999988888888775
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=3e-08 Score=85.59 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=66.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM-KPNSIVWGALLGACRVHRDA 533 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~ 533 (720)
...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444311 1 122333444444444555555555554443 11 12445566666666666677
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++|...++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777666666666666777777777777777777666654
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.90 E-value=4.3e-08 Score=97.07 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=114.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc------CC-CCChhHhhHHhhhhhhcCCHHHHHHHHHhccC-------C---
Q 005000 350 TIVSILTACANLGALELGEWVKTYIDKN------KV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-------K--- 412 (720)
Q Consensus 350 t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--- 412 (720)
++..+...+...|+++.|...+..+.+. +. +....++..+...|...|++++|...|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344444444445555554444444332 11 12244566667777777777777777766532 1
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHc-----
Q 005000 413 -DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA------SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQH----- 479 (720)
Q Consensus 413 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 479 (720)
...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2446677777778888888888888877663 11332 2467777788888888888888888776321
Q ss_pred -CCCc-cHHHHHHHHHHHHhc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 480 -GIEP-NEAHYGCMVDLLGRA------GHLNEALEVIKNMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 480 -~~~p-~~~~~~~li~~~~~~------g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
...+ ....+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1112 122333333333332 23455555555553 223 35578888899999999999999999988753
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=2.3e-08 Score=99.91 Aligned_cols=177 Identities=10% Similarity=0.013 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
...+.....+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++++
T Consensus 100 ~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 100 QPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp CCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34556666777766566677888888999999999999999999885 454 467888889999999999999999987
Q ss_pred HHHcCCCccHHHHHHHH-HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 005000 476 TIQHGIEPNEAHYGCMV-DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-- 550 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li-~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 550 (720)
. ...|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++
T Consensus 178 ~---~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 178 P---LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp C---GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred c---hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 5 2345554333333 3467788888898888876 4455 68899999999999999999999999999999997
Q ss_pred cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 551 EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
..++..|+.+|...|+.++|...+++..
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999999998887654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=8.7e-09 Score=116.18 Aligned_cols=167 Identities=11% Similarity=-0.057 Sum_probs=105.7
Q ss_pred hhcCCHHHHHHHHHhcc-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh
Q 005000 394 CKCGDVEKAQRVFREML-----------RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTH 461 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 461 (720)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666667766666655 224556666666677777777777777776664 23 33456666666667
Q ss_pred cCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
.|++++|.+.|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777666522 23 45566666677777777777 6666665 3344 45667777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777666554
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=4e-09 Score=93.93 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=101.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD 532 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 532 (720)
...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566788999999998764 33443 345567899999999999999999997 5566 68899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH-HHHHHh
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL-RQMILD 579 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 579 (720)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 466654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=7e-08 Score=83.27 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 495 (720)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677777888888888888888887653 234566777777888888888888888887632 234566777888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999888876 2233 6778888889999999999999999999988886
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=2.6e-07 Score=90.95 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=130.8
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DKFTWTAMIVGLAINGHGDKSLDMFSQML 441 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 441 (720)
+...++...+.+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555554444 344555567888888899999999999887433 45677778889999999999999999998
Q ss_pred HCCCCC-----ChHHHHHHHHH--HHhcC--ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005000 442 RASIIP-----DEVTYVGVLSA--CTHTG--MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM- 511 (720)
Q Consensus 442 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~- 511 (720)
+. .| +..+...+..+ ....| ++++|..+|+++.. -.|+......+..++.+.|++++|++.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 35666666666 33334 89999999999863 2455333344444899999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 512 PM----------KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 512 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.. .| |+.+...++......|+ .|.++++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 25 56667677766667787 88999999999999987543
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=2.5e-06 Score=91.72 Aligned_cols=371 Identities=11% Similarity=-0.009 Sum_probs=203.4
Q ss_pred cC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCC-hhHHHHH
Q 005000 128 DI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQ-FDETRKL 203 (720)
Q Consensus 128 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l 203 (720)
.| +++.|+.+++.++..- |. |+++.++.+|+.... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 34 3667777777776532 11 889999999986544 688888888887776663 4566777
Q ss_pred HHHHHHC-CCCC-CHhhHHHHHHHHhc----CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005000 204 FGEMERK-GVLP-TSVTIVLVLSACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277 (720)
Q Consensus 204 ~~~m~~~-g~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 277 (720)
|+..... |..| +...|...+..+.. .++.+.++.+++.+++.....-..+|......-.. .....+.++..+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH
Confidence 8776653 5333 45566666655432 35677888888888874322122233322222111 1122222222210
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccchHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCC
Q 005000 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMP----ERDYVLWTAMIDGYLRVNR-------FREALTLFREMQTSNIRP 346 (720)
Q Consensus 278 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p 346 (720)
. +.+..|..+++.+. ..+...|...+.--..++. .+.+..+|++++... +.
T Consensus 150 ---------------~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 150 ---------------L--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp ---------------H--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred ---------------h--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 0 11122222221111 0122345544443222210 234566777776642 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHH-HHHHHhc------------cCCC
Q 005000 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA-QRVFREM------------LRKD 413 (720)
Q Consensus 347 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~------------~~~~ 413 (720)
+...+...+.-+...|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+.. ....
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhccccc
Confidence 4555555555566677788888888877776 333333322 2221111111 1111111 0011
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH-TGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
...|-..+....+.++.+.|..+|++. .. ..++...|......-.. .++.+.|..+|+...+..+- ++..+...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yi 361 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 245666677666777888888888888 32 12233344332222222 33688899999888755432 344566678
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
+...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888873 2567788888777778888888777777664
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=2.2e-07 Score=88.01 Aligned_cols=172 Identities=8% Similarity=-0.054 Sum_probs=135.1
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC----ChhhHHHHHHHHH
Q 005000 402 AQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG----MVDEGREYFADMT 476 (720)
Q Consensus 402 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 476 (720)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555543 3467778888888888888888888888888765 45566666666766 6 8899999998885
Q ss_pred HHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 005000 477 IQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNM-PMKPN---SIVWGALLGACRV----HRDAEMAEMAAKQIL 544 (720)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 544 (720)
+. -++..+..|..+|.. .+++++|.++|++. ...|. +..+..|...|.. .+++++|...++++.
T Consensus 81 -~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 33 356677778888877 88999999999987 44443 7888888888888 889999999999999
Q ss_pred hcCCCCcchHHHHHhHhhhc-C-----ChhHHHHHHHHHHhCCC
Q 005000 545 ELDPDNEAVYVLLCNIYAAC-N-----RWDNFRELRQMILDRGI 582 (720)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 582 (720)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66778999999999765 3 89999999999887663
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=2.1e-08 Score=88.89 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=90.0
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 480 GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 480 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.+.| +...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3444 3566778888899999999999999987 4556 68899999999999999999999999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 557 LCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
++.+|.+.|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987743
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=2.9e-08 Score=91.07 Aligned_cols=157 Identities=12% Similarity=0.012 Sum_probs=99.7
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (720)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH---
Confidence 34455566666677777766666542 24555666666666666666666666655443 2222111 111000
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
.+.+.+...+|.+.+++. ...| +...|..+...+...|++++|...+
T Consensus 83 -------------------------------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 -------------------------------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp -------------------------------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 001111112344444443 2345 5788888889999999999999999
Q ss_pred HHHHhcCCCC--cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 541 KQILELDPDN--EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 541 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999875 55889999999999999999998887653
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=6.1e-08 Score=83.16 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666665 3334 566666666667777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 005000 564 CNRWDNFRELRQMILD 579 (720)
Q Consensus 564 ~g~~~~a~~~~~~m~~ 579 (720)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777666654
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=6.8e-08 Score=106.84 Aligned_cols=159 Identities=12% Similarity=0.068 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHH
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998864 36788999999999999999999999999985 444 57888899999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH---RDAEMAEMAAKQILEL 546 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 546 (720)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987432 335788999999999999999999999987 4445 678899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 005000 547 DPDNEAVYVLLC 558 (720)
Q Consensus 547 ~p~~~~~~~~l~ 558 (720)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888777
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.9e-07 Score=103.67 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=148.8
Q ss_pred hccCcHHHHHHHHHHHH--------HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHc
Q 005000 359 ANLGALELGEWVKTYID--------KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAIN 427 (720)
Q Consensus 359 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 427 (720)
...|++++|.+.+..+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 32 245677888899999999999999999998853 4778999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 506 (720)
|++++|++.|++.++. .|+ ...+..+..++...|++++ .+.|+++.+.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999985 454 4678889999999999999 99999987321 2356788999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 005000 507 VIKNM-PMKPN-SIVWGALLGACRVHRD-----AEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 507 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 57785 5678788777766555 3445555555556665555443
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=4.3e-08 Score=86.86 Aligned_cols=101 Identities=8% Similarity=-0.028 Sum_probs=88.4
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 480 GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 480 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 4566777888899999999999999887 3445 78889999999999999999999999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHhC
Q 005000 557 LCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=4.9e-07 Score=91.16 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=154.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHH
Q 005000 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404 (720)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 404 (720)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567888998888776532 111 0 11136677766665543 456778899999988
Q ss_pred HHHhccCC-----C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--hHHHHHHHHHHHhcCChhhHHH
Q 005000 405 VFREMLRK-----D----KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS---IIPD--EVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 405 ~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
.|.+...- + ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88876321 2 3478888899999999999999999876531 1222 2467778888888 99999999
Q ss_pred HHHHHHHHcCCC---c-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 005000 471 YFADMTIQHGIE---P-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PM---KPN----SIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 471 ~~~~m~~~~~~~---p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
.|++......-. + ....+..+...|.+.|++++|++.+++. .+ .++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999876422111 1 1467888999999999999999999887 11 122 2356677777888899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHhHhhhcCChhHHHHH
Q 005000 539 AAKQILELDPDNEAV-----YVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 573 (720)
.+++++ +.|..... ...++..| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99875432 33455555 56776655553
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.2e-07 Score=81.38 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=93.7
Q ss_pred CCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005000 445 IIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWG 521 (720)
Q Consensus 445 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 521 (720)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45554 45666777888888888888888887632 1335778888888999999999999998886 4455 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
.+..++...|++++|+..++++++++|+++.++..|++++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998888877653
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=6e-07 Score=89.83 Aligned_cols=165 Identities=8% Similarity=-0.046 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHHhcCChhhHHHHHHHHHHHcC--CCcc--H
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-----VTYVGVLSACTHTGMVDEGREYFADMTIQHG--IEPN--E 485 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~ 485 (720)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++...... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888775322111 1233455566788899999999988752211 1111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM----PMKPN-----SIVWGALLGACRVHRDAEMAEMAAKQILELDPD------N 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 550 (720)
..|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999998876 11222 258889999999999999999999999987532 1
Q ss_pred cchHHHHHhHhhhcCChhHH-HHHHHHHHh
Q 005000 551 EAVYVLLCNIYAACNRWDNF-RELRQMILD 579 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 579 (720)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 776776643
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=2e-07 Score=103.03 Aligned_cols=146 Identities=8% Similarity=-0.054 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFS 438 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 438 (720)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555555555555432 23345555566666666666666666665532 234556666666666666666666666
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 005000 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA---GHLNEALEVIKNM 511 (720)
Q Consensus 439 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~eA~~~~~~~ 511 (720)
+..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 665532 1123455555556666666666666666554221 12345555566666666 6666666666554
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=1.3e-06 Score=87.37 Aligned_cols=160 Identities=8% Similarity=-0.045 Sum_probs=115.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCChH----HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHH
Q 005000 420 MIVGLAINGHGDKSLDMFSQMLRASI-IPDEV----TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGC 490 (720)
Q Consensus 420 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 490 (720)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+.+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776321 22211 2334555666777888888888888642221222 346888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-----M---KPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYV 555 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 555 (720)
+...|...|++++|.+.++++- . .|. ..+|..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888999888888887761 1 122 3477889999999999999999999999875432 56889
Q ss_pred HHHhHhhhcCC-hhHHHHHHHHHHh
Q 005000 556 LLCNIYAACNR-WDNFRELRQMILD 579 (720)
Q Consensus 556 ~l~~~~~~~g~-~~~a~~~~~~m~~ 579 (720)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887754
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=4.1e-07 Score=85.85 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=109.6
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTA----------------MIVGLAINGHGDKSLDMFSQMLRASIIP-DE 449 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 449 (720)
...+.+.|++++|...|++.... +...|.. +...|...|++++|+..|++.++. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 34455666777777776666432 2334444 788888999999999999998885 44 45
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGH--LNEALEVIKNMPMKPNS--IVWGALL 524 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~--~~eA~~~~~~~~~~p~~--~~~~~ll 524 (720)
..+..+..++...|++++|...|+++.+. .| +...+..+...|...|. .+++...++... .|+. ..|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 67888888899999999999999988732 34 56778888888776654 345566666652 3443 3455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
.++...|++++|+..+++++++.|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66777889999999999999999974
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=3.7e-07 Score=86.33 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 529 (720)
+..+...+...|++++|...|++. +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555667778888888877654 3567777888888888888888888888776 3334 67788999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc----------------chHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 530 HRDAEMAEMAAKQILELDPDNE----------------AVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.|++++|...+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 899999999999999999999999987654
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=3.6e-06 Score=90.42 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=68.3
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhh
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN-LGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 393 (720)
.|...+....+.+..+.|..+|... ... ..+...|......-.. .++.+.|+.+++...+.- +.+...+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4555555555666677777777766 211 1222333211111111 224666777777666542 22334455566666
Q ss_pred hhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.+.|+.+.|..+|+.+. +....|...+.--...|+.+.+.++++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777777777763 3455666666655666666666666666553
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=3e-07 Score=80.70 Aligned_cols=96 Identities=8% Similarity=-0.106 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888899999999998886 3445 77889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.62 E-value=5e-06 Score=82.66 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=112.2
Q ss_pred HhhHHhhhhhhcC--CHHHHHHHHHhccC---CCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCChHHH
Q 005000 385 VGNALIDMYCKCG--DVEKAQRVFREMLR---KDKFTWTAMIVGL----AIN---GHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 385 ~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
+|+.--..+...| +++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+.. +-|..+|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3333333344444 56666666665532 2344555433333 333 56667777777766642 2244556
Q ss_pred HHHHHHHHhcCChh--hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 453 VGVLSACTHTGMVD--EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH------LNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 453 ~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
..-...+.+.|.++ ++.++++.+.+.. .-|...|+.-..++.+.|+ ++++++.++++ ...| |...|+-
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 55555566666666 6677776665321 2345555555555555555 66777776665 3344 6677777
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 523 LLGACRVHRDA-EMAEMAAKQILELD---PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 523 ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+...+.+.|+. +....+++++++++ |.++.++..++++|.+.|+.++|.+.++.+.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777666653 33445666666655 66667777777777777777777777777654
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=8.4e-07 Score=84.85 Aligned_cols=185 Identities=15% Similarity=0.049 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhHhhHHhhhhhhcCCHHHHHHHHHhccC--CC-H---HHHHH
Q 005000 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKAQRVFREMLR--KD-K---FTWTA 419 (720)
Q Consensus 348 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 419 (720)
...+-.....+...|+++.|...+..+++...... ...+..+...|.+.|++++|...|++..+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566678889999999999999988642221 35677889999999999999999999853 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcC
Q 005000 420 MIVGLAI------------------NGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHG 480 (720)
Q Consensus 420 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 480 (720)
+..++.. .|+.++|+..|+++++. .|+.. ....... ...+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH-----
Confidence 5555554 45677777777777764 34432 1111100 00001111
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++++....|++...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 011235677899999999999999987 33343 2568888999999999999999999999999987543
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.5e-07 Score=78.25 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777888888899888888876 3444 67888999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888763
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=7.4e-07 Score=81.46 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC--CHHHHHHHHHH-HHHc
Q 005000 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--DKFTWTAMIVG-LAIN 427 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~-~~~~ 427 (720)
+......+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+..... +...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3445566788999999999999877654 456788899999999999999999999998543 34333322211 1222
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN---EAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~e 503 (720)
+...+|+..|++..+. .|+ ...+..+..++...|++++|...|+++. ...|+ ...+..+...|...|+.++
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNIL---KVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333466667766653 343 4556666666667777777777776664 22332 3455566666666666666
Q ss_pred HHHHHHh
Q 005000 504 ALEVIKN 510 (720)
Q Consensus 504 A~~~~~~ 510 (720)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=4.1e-07 Score=91.74 Aligned_cols=197 Identities=8% Similarity=-0.018 Sum_probs=150.7
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005000 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439 (720)
Q Consensus 360 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 439 (720)
..|++++|..++..+.+.... . .+...+++++|...|... ...|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357788888888887764321 1 122258999999988765 5678889999999999998
Q ss_pred HHHCCC---CCC--hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC--Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 440 MLRASI---IPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGI--EP--NEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 440 m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
..+... .+. ..+|..+...+...|++++|...|++..+-+.- .| ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 776311 111 247888888999999999999999987643211 12 24678889999988 999999999988
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHhHhhhcCChhHHHHHHHH
Q 005000 511 M-PMKP---N----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE------AVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 511 ~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
. .+.| + ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788899999999999999999999999876543 2677788889999999999999998
Q ss_pred HH
Q 005000 577 IL 578 (720)
Q Consensus 577 m~ 578 (720)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=4.7e-07 Score=92.49 Aligned_cols=145 Identities=14% Similarity=0.049 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
+...|..+...|.+.|++++|+..|++.++.. |+...+ ..+++.++- .-....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~---------~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ---------ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH---------HHHHHHHHHHH
Confidence 44567777777777888888888887777642 222100 001111110 01246778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998887 4445 6889999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHh
Q 005000 571 -RELRQMILD 579 (720)
Q Consensus 571 -~~~~~~m~~ 579 (720)
.+.++.|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666643
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=2.1e-06 Score=80.96 Aligned_cols=143 Identities=11% Similarity=-0.045 Sum_probs=76.8
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
.+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344455555555555555555555555555555555555555555555555554431 1122344444444455555555
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
|.+.|+...+...-.+... +...| +...| ....|..+..++...|++++|...+++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555544432110000000 00000 01223 2367888888999999999999999999999
Q ss_pred CCCC
Q 005000 547 DPDN 550 (720)
Q Consensus 547 ~p~~ 550 (720)
.|++
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 9975
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=1.2e-06 Score=78.68 Aligned_cols=127 Identities=8% Similarity=-0.001 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACR 528 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 528 (720)
.+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455555666677777777777766532 1234666777777777888888888877775 3334 5778888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHH--HhHhhhcCChhHHHHHHHHHHh
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLL--CNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..|++++|...+++++++.|++...+..+ +..+...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988877544 4448888999999998877643
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.3e-06 Score=73.95 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|.++++++.... +.+...+..+...|.+.|++++|...++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666677777777777777665321 234566677777777778888887777776 222 3677888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888888888876654
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=1.2e-06 Score=74.94 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|...|++..... +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 455556666667777777777777665321 234566777777777888888888877775 3334 577888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998888763
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-06 Score=75.12 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGA 526 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~ 526 (720)
..+..+...+...|++++|...|++.. ...| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455566666666777777777776664 1223 4566666777777777777777777665 2333 57788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
+...|++++|...++++++.+|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8899999999999999999999888888888888877664
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=4e-05 Score=76.11 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=167.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCChhHhhHHhhhh----hhc---
Q 005000 327 NRFREALTLFREMQTSNIRPDEF-TIVSILTACANLG--ALELGEWVKTYIDKNKVKNDIFVGNALIDMY----CKC--- 396 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y----~~~--- 396 (720)
...++|+.++..++.. .|+.. .++.--..+...+ .++.+......++... +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3346788888887764 44433 3444444455566 7888888888777765 33445555443333 444
Q ss_pred CCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC------h
Q 005000 397 GDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGD--KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM------V 465 (720)
Q Consensus 397 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 465 (720)
+++++++.+++.+. .++..+|+--.-.+.+.|.++ ++++.++++++.... |...|+.-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 78999999999885 347788888888888889888 999999999986533 56677766666777776 8
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE-ALEVIKNM-PM----KPNSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
+++++.++.+... -+-|...|+.+..++.+.|+..+ +.++.++. .. ..++..+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999888732 24578889889999999998555 55677765 22 23788899999999999999999999
Q ss_pred HHHHHh-cCCCCcchHHHHHhH
Q 005000 540 AKQILE-LDPDNEAVYVLLCNI 560 (720)
Q Consensus 540 ~~~~~~-~~p~~~~~~~~l~~~ 560 (720)
++++.+ .+|.....+...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999996 899887777655543
No 129
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.49 E-value=2.9e-06 Score=79.90 Aligned_cols=183 Identities=11% Similarity=0.033 Sum_probs=121.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
.....+...|++++|+..|++.... .|+........ ..... ..........+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~-----------------~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKN-----------------SEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTT-----------------SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcch-----------------hhhhHHHHHHHHHHHHHCC
Confidence 3455677888999999999888764 34432211110 00000 0011223445788899999
Q ss_pred CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC--hhhHHHH
Q 005000 398 DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGM--VDEGREY 471 (720)
Q Consensus 398 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~~ 471 (720)
++++|...|++..+ .+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++...|. .+.+...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998753 36788999999999999999999999999885 454 4677777777765554 3445555
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLG 525 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~ 525 (720)
+.... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 147 ~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55442 22333334445666777889999999999986 67888776665554
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.9e-05 Score=78.81 Aligned_cols=202 Identities=11% Similarity=0.008 Sum_probs=139.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH---hhHHhhhhhhcCCHHHHHHHHHhccCC
Q 005000 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV---GNALIDMYCKCGDVEKAQRVFREMLRK 412 (720)
Q Consensus 336 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~~ 412 (720)
+..+......|+..++..+...+.-.-+ .+.......+... +...+..+.+.|++++|...+++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3344433356777776666655543211 1111111222222 223467788899999999999987542
Q ss_pred ---CH-----H-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 413 ---DK-----F-TWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDE----VTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 413 ---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
+. . .+..+...+...|++++|+..|++....... ++. .+++.+..++...|++++|..+|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1 3334666677788999999999999984332 232 26888999999999999999999988632
Q ss_pred c----CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 005000 479 H----GIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-SIVWGALLGACRVHR-DAEMAEMAAKQIL 544 (720)
Q Consensus 479 ~----~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~ 544 (720)
. +..+. ..+|..+...|.+.|++++|.+.+++. ...+. ..+|..+..++...| ++++|...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 22222 347888999999999999999998876 11222 678899999999999 5799999999998
Q ss_pred hc
Q 005000 545 EL 546 (720)
Q Consensus 545 ~~ 546 (720)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.49 E-value=8.1e-06 Score=77.06 Aligned_cols=156 Identities=8% Similarity=-0.044 Sum_probs=101.4
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHcCCCCChhHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG----ALELGEWVKTYIDKNKVKNDIFVGN 387 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~~~~~~~~~~~ 387 (720)
++.++..+...|...+++++|+.+|++..+.| +...+..+-..+.. + +.++|...+....+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667777777777777777777777777665 44455555555555 5 6777777777776654 455566
Q ss_pred HHhhhhhh----cCCHHHHHHHHHhccCCC-----HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 005000 388 ALIDMYCK----CGDVEKAQRVFREMLRKD-----KFTWTAMIVGLAI----NGHGDKSLDMFSQMLRASIIPDEVTYVG 454 (720)
Q Consensus 388 ~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 454 (720)
.|..+|.. .+++++|...|++..+.+ +.++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666666 677777777777775543 4667777777766 66777777777777665 223334555
Q ss_pred HHHHHHhc-C-----ChhhHHHHHHHHH
Q 005000 455 VLSACTHT-G-----MVDEGREYFADMT 476 (720)
Q Consensus 455 ll~a~~~~-g-----~~~~a~~~~~~m~ 476 (720)
|...|... | ++++|..+|+...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 55555432 2 6777777777665
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=3.8e-06 Score=83.95 Aligned_cols=162 Identities=10% Similarity=-0.021 Sum_probs=121.0
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCC---CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRK---DK------FTWTAMIVGLAINGHGDKSLDMFSQMLRASI---IPD--EV 450 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 450 (720)
.+...+..|...|++++|.+.+++..+. .. ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445677888999999999998866321 11 2234455667788999999999999886322 222 34
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH---HcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-CH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTI---QHGIEPN--EAHYGCMVDLLGRAGHLNEALEVIKNM-PM------KP-NS 517 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~------~p-~~ 517 (720)
+++.+...+...|++++|..+|+++.+ ..+-.+. ...+..+...|.+.|++++|.+.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998863 2222221 258889999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 005000 518 IVWGALLGACRVHRDAEMA-EMAAKQILEL 546 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 546 (720)
.+|..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7888899999999999999 7778888764
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=5.5e-07 Score=89.45 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=131.4
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLS 457 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 457 (720)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556677788888899999999888774 236778888888999999999999999988875 444 467778888
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 536 (720)
++...|++++|...|+...+. .|+. ..+...+....+.++...... .......++......+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 899999999999999887632 2221 011111111111111111111 2222333344444333 3332 6889999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhc-CChhHHHHHHHHHHhC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAAC-NRWDNFRELRQMILDR 580 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 580 (720)
.+.++++++++|++......+..++.+. +++++|.+++..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888888777 7799999999888653
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1e-06 Score=80.54 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=86.1
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGA-CRVHRDA--E 534 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 534 (720)
...|++++|...++...... +.+...|..+...|...|++++|.+.+++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777765322 235567777777788888888888877776 2333 56677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+|...++++++.+|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877643
No 135
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=4e-06 Score=83.47 Aligned_cols=152 Identities=7% Similarity=-0.046 Sum_probs=64.0
Q ss_pred HhhhhhhcCCHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCC
Q 005000 389 LIDMYCKCGDVEKAQRVFREML--R-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY-VGVLSACTHTGM 464 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~ 464 (720)
+...+.+.|++++|...|++.. . .+...+..+...+.+.|++++|+..+++.... .|+.... ......+...+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcc
Confidence 3333444444444444444432 1 13334444444444444444444444444332 2222211 111112333444
Q ss_pred hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN---SIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 465 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
.++|...+++.... -+.+...+..+..+|...|++++|++.++++ ...|+ ...+..++..+...|+.+.|...+
T Consensus 201 ~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 201 DTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp SCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 44444444444321 1223444444555555555555555555444 22221 344555555555555555555555
Q ss_pred HHHH
Q 005000 541 KQIL 544 (720)
Q Consensus 541 ~~~~ 544 (720)
++.+
T Consensus 279 r~al 282 (287)
T 3qou_A 279 RRQL 282 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=4.5e-07 Score=77.02 Aligned_cols=93 Identities=16% Similarity=0.033 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445677788899999999999887 4455 78889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 005000 566 RWDNFRELRQMILDR 580 (720)
Q Consensus 566 ~~~~a~~~~~~m~~~ 580 (720)
++++|.+.+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=9.7e-07 Score=79.57 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344445555555556666665555554 2233 45556666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 005000 563 ACNRWDNFRELRQMILD 579 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~ 579 (720)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665544
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=8e-07 Score=76.23 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA-------VYVL 556 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 556 (720)
..+..+...|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999999886 4556 6788999999999999999999999999999887653 6778
Q ss_pred HHhHhhhcCChhHHHHHHHHHHh
Q 005000 557 LCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999988765
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=2e-06 Score=75.98 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=88.0
Q ss_pred CCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005000 445 IIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWG 521 (720)
Q Consensus 445 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 521 (720)
+.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 46777788889999999999999998732 1336788889999999999999999999987 4555 578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.+..++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999853
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=2.9e-06 Score=73.55 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=82.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777788888888888888888776 3344 577888888889999999999999999999999999999999999
Q ss_pred hhhcCChhHHHHHHHHHHhC
Q 005000 561 YAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 561 ~~~~g~~~~a~~~~~~m~~~ 580 (720)
|...|++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998888764
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=1.8e-06 Score=71.48 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHhH
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--NEAVYVLLCNI 560 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 560 (720)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345556777777788888888887776 2333 6778888888899999999999999999999999 88999999999
Q ss_pred hhhc-CChhHHHHHHHHHHhCC
Q 005000 561 YAAC-NRWDNFRELRQMILDRG 581 (720)
Q Consensus 561 ~~~~-g~~~~a~~~~~~m~~~~ 581 (720)
|... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887654
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=5.5e-06 Score=80.43 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=130.9
Q ss_pred hcCCHHHHHHHHHhccC--C-CHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCh---------------
Q 005000 395 KCGDVEKAQRVFREMLR--K-DKFTWTAM-------IVGLAINGHGDKSLDMFSQMLRASIIPDE--------------- 449 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 449 (720)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888888753 2 45678777 4556655666666665555443 33332
Q ss_pred -------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 005000 450 -------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS----I 518 (720)
Q Consensus 450 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~----~ 518 (720)
.........+...|++++|.+.|+.+. ...|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122335566788899999999998764 23454436666777889999999999999877433433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELD--PD-NEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788888999999999999999998543 54 4457788999999999999999999998763
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=5.4e-06 Score=77.29 Aligned_cols=93 Identities=12% Similarity=-0.026 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----c
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-P---MKP-N----SIVWGALLGACRVHRDAEMAEMAAKQILELDP--DN----E 551 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~---~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~ 551 (720)
.+..+...|...|++++|.+.+++. . ..+ + ...+..+...+...|++++|...+++++++.+ .+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555555555555555443 0 011 1 23455666666777777777777777665421 11 1
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+..++.+|...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356777778888888888777776654
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.36 E-value=2.9e-06 Score=72.80 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=89.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
..+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 335677888999999999999999999987 5555 78889999999999999999999999999999999999999999
Q ss_pred HhhhcCChhHHHHHHHHHHhC
Q 005000 560 IYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 560 ~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988763
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=2.5e-06 Score=79.54 Aligned_cols=170 Identities=8% Similarity=-0.078 Sum_probs=104.8
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
+......|+++.|.+.|+..... ....|..+...+...|++++|+..|++.+... |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 33344456666666665533221 34466677777788888888888888877632 221100000
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
....-.. ......|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001356777888888889999998888876 3344 67889999999999999999999999999
Q ss_pred hcCCCCcchHHHHHhHhhhcCChhHHH-HHHHHHHhC
Q 005000 545 ELDPDNEAVYVLLCNIYAACNRWDNFR-ELRQMILDR 580 (720)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 580 (720)
+++|+++.++..++.++...|+.+++. ..++.|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888877 455555443
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=1.5e-06 Score=93.21 Aligned_cols=118 Identities=7% Similarity=-0.019 Sum_probs=94.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 534 (720)
..+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456678888888888877632 1234778888888889999999999988887 4555 6788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhH--hhhcCChhHHHHHHHH
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNI--YAACNRWDNFRELRQM 576 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 576 (720)
+|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8889999999998774
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=7.3e-07 Score=78.83 Aligned_cols=108 Identities=9% Similarity=-0.035 Sum_probs=82.6
Q ss_pred CCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 446 IPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 446 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++. ...| +...|..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4433 35566667777888888888888877632 1335677777888888888888888888876 3445 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+..++...|++++|...+++++++.|+++....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999999999998776543
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=4.7e-06 Score=77.75 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=99.6
Q ss_pred hcCCHHHHHH---HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHHhcCChh
Q 005000 395 KCGDVEKAQR---VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR----ASIIPD-EVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 395 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (720)
..|++++|.+ .+..-+......+..+...+...|++++|+..+++... .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 44433333455677777777778888888887777665 111222 245666777788888888
Q ss_pred hHHHHHHHHHHH---cCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 005000 467 EGREYFADMTIQ---HGIEP--NEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDA 533 (720)
Q Consensus 467 ~a~~~~~~m~~~---~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~ 533 (720)
+|...+++.... .+-.| ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888776533 22121 2345677788888888888888887765 11112 23456777888889999
Q ss_pred HHHHHHHHHHHhcC
Q 005000 534 EMAEMAAKQILELD 547 (720)
Q Consensus 534 ~~a~~~~~~~~~~~ 547 (720)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888887753
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.34 E-value=3.9e-06 Score=81.47 Aligned_cols=138 Identities=9% Similarity=-0.061 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc--HHHHHHHHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGCMVDLL 495 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 495 (720)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence 34455667778888888888776654 3554444445557778888888888887542 111 121 23567788889
Q ss_pred HhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 496 GRAGHLNEALEVIKNMP---MKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
.+.|++++|++.|++.. ..|. ...+.....+++..|+.++|...++++++.+|+ +.+...|.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999998872 2243 346778888899999999999999999999998 7666666443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=4.6e-06 Score=76.07 Aligned_cols=127 Identities=8% Similarity=0.052 Sum_probs=86.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--H
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL-LGRAGHL--N 502 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 502 (720)
..|++++|+..+++..... +.+...+..+...+...|++++|...|+++.... +.+...+..+..+ |.+.|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666542 2244566666677777777777777777765322 2245566667777 6677887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 503 EALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 503 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+|.+.++++ ...| +...|..+...+...|++++|...+++++++.|+++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 888888776 3344 5778888888999999999999999999999998865443
No 151
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=1.5e-06 Score=76.13 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKPN-------------SIVWGALLGACRVHRDAEMAEMAAKQILEL------- 546 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 546 (720)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334455556666666666666654 22222 338888888899999999999999999988
Q ss_pred CCCCcchH----HHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 547 DPDNEAVY----VLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 547 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+|++...| ..++.++...|++++|.+.+++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 9999999999999999999988865
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=4.2e-06 Score=69.92 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (720)
.+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444455555555555555555554 2222 4455555555555566666666666666666666555566666666666
Q ss_pred CChhHHHHHHHHHHh
Q 005000 565 NRWDNFRELRQMILD 579 (720)
Q Consensus 565 g~~~~a~~~~~~m~~ 579 (720)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666665555543
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=2.9e-06 Score=76.21 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 467888888899999999999999999999999999999999999999999999999888765
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=4.3e-06 Score=70.63 Aligned_cols=96 Identities=25% Similarity=0.305 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 3334 67889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.2e-05 Score=70.51 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
..+..+...+...|++++|...|++.. ...|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 445555555566666666666666554 23343 455666666777777777777777665 2334 56677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
..++...|++++|...++++++++|++...+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 8888888888888888888888888887777666666543
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=6.2e-06 Score=72.32 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=89.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
.+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888999999999999999999987 66776 67888899999999999999999999999999999999999
Q ss_pred HhHhhhcCChhHHHHHHHHHHhC
Q 005000 558 CNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988763
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=9.8e-06 Score=67.57 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345555566666777777777777665321 224566667777777777777777777765 3334 577888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999998887777766553
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=1e-05 Score=68.96 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 3344 6888999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 005000 562 AACNRWDNFRELRQMILDR 580 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~~ 580 (720)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=3.3e-06 Score=73.89 Aligned_cols=108 Identities=12% Similarity=-0.017 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACR 528 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 528 (720)
.+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|.+.|++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44556666777788888888887776321 235667777888888888888888888876 3444 5677888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
..|++++|...+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999887665544333
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5.2e-06 Score=70.79 Aligned_cols=109 Identities=9% Similarity=-0.037 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACR 528 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 528 (720)
.+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555566667777777777777665321 234566777777777888888888777776 3445 5778888888899
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCcchHHHHHhHh
Q 005000 529 VHRDAEMAEMAAKQILELD------PDNEAVYVLLCNIY 561 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 561 (720)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999988 77776666665554
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=7.3e-06 Score=73.70 Aligned_cols=107 Identities=13% Similarity=0.006 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456666777777888888888887776321 235677778888888888888888888876 4445 578899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
...|++++|...++++++++|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999988665554
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=1e-05 Score=86.38 Aligned_cols=162 Identities=11% Similarity=0.041 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
.+++++|...|+.... .....|..+...+.+.|++++|+..|++.++. .|+...+ . -+...
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~--- 310 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK--- 310 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH---
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH---
Confidence 3444445544443322 13456777788888888888888888887763 2221100 0 00100
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
... .-....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++
T Consensus 311 -~~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 311 -ASE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp -HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 010 012457778888999999999999999887 4445 68889999999999999999999999999999999
Q ss_pred cchHHHHHhHhhhcCChhHHHH-HHHHHHh
Q 005000 551 EAVYVLLCNIYAACNRWDNFRE-LRQMILD 579 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 579 (720)
..++..++.++.+.|+++++.+ .++.|..
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998875 4555543
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=9.7e-05 Score=74.15 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=117.9
Q ss_pred hHhhHHhhhhhhcC-CHHHHHHHHHhccC---CCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 384 FVGNALIDMYCKCG-DVEKAQRVFREMLR---KDKFTWTAMIVGLAIN-G-HGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 384 ~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
.+|+.--..+...| .++++++.++.+.. ++..+|+.-...+.+. + ++++++++++++.+.. .-|..+|..-..
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~w 167 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33444334444445 46777777776643 3555666665555554 5 6777777777777643 224455555555
Q ss_pred HHHhcCChh--------hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHH
Q 005000 458 ACTHTGMVD--------EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH-------LNEALEVIKNM-PMKP-NSIVW 520 (720)
Q Consensus 458 a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-------~~eA~~~~~~~-~~~p-~~~~~ 520 (720)
...+.|.++ +++++++++.+. -.-|...|+....++.+.++ ++++++.++++ ...| |...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 555555555 777777777632 13356667777777777665 67777777765 3445 67788
Q ss_pred HHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 521 GALLGACRVHRDA--------------------EMAEMAAKQILELD------PDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 521 ~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
+-+-..+.+.|+. .........+.... +.++.+...|+++|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7777777666543 22223333332222 456677889999999999999999999
Q ss_pred HHHHh
Q 005000 575 QMILD 579 (720)
Q Consensus 575 ~~m~~ 579 (720)
+.+.+
T Consensus 326 ~~l~~ 330 (349)
T 3q7a_A 326 EKLSS 330 (349)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=4.3e-05 Score=68.30 Aligned_cols=129 Identities=10% Similarity=-0.043 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 494 (720)
..|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...+++.... .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556666666777777777777666542 224456666666677777777777777766532 12345666777777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 495 LGRAGHLNEALEVIKNM-PMKP-NSIVWG--ALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
|.+.|++++|.+.+++. ...| +...+. .++..+...|++++|...+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77777777777777765 2333 344443 3333366677788887777776543
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=1.2e-05 Score=82.05 Aligned_cols=97 Identities=18% Similarity=0.028 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----------------SIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+...+..+...|.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|+..+++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456667777777888888888877776 33332 578999999999999999999999999999
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=1.7e-06 Score=72.89 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 498 AGHLNEALEVIKNM-PM---KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444555555444 22 13 234555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 005000 573 LRQMILD 579 (720)
Q Consensus 573 ~~~~m~~ 579 (720)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=1.2e-05 Score=69.52 Aligned_cols=100 Identities=7% Similarity=-0.098 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLG 525 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 525 (720)
+...+..+...+...|++++|...|+...... +.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 44566667777777777777777777765321 234667777778888888888888887776 3344 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 899999999999999999998887
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=8.3e-06 Score=69.69 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKPN-S---IVWGALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYA 562 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 562 (720)
+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666654 22232 2 356666666777777777777777777777776 556777777777
Q ss_pred hcCChhHHHHHHHHHHh
Q 005000 563 ACNRWDNFRELRQMILD 579 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~ 579 (720)
..|++++|.+.++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776655
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=1.3e-05 Score=79.39 Aligned_cols=106 Identities=7% Similarity=-0.094 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLG 525 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 525 (720)
+...+..+...+...|++++|...|+...... +.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566777778888888888888888876321 225677778888888888888888888876 4555 5677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 888888888888888888888887654443
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=4.1e-05 Score=71.18 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-N----------------SIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
...+..+...+.+.|++++|.+.|++. ...| + ...|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777778888888888888775 2222 2 278888999999999999999999999999
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999998875
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=2.1e-05 Score=81.08 Aligned_cols=138 Identities=9% Similarity=0.081 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMV 492 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 492 (720)
...|..+...+.+.|++++|++.|++.++. .|+. ......+++ ....| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~----------~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG----------AKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH----------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHH----------HHHHHHHHHHHHHHH
Confidence 345777777888888888888888877652 0100 000011111 01122 456788899
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5666 6788999999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 005000 571 REL 573 (720)
Q Consensus 571 ~~~ 573 (720)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.08 E-value=1.2e-05 Score=68.54 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-------EAVYV 555 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 555 (720)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345667777888888888888888876 2333 67788888889999999999999999999988766 77889
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++.+|...|++++|.+.++.+.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.08 E-value=0.0011 Score=66.38 Aligned_cols=231 Identities=12% Similarity=0.017 Sum_probs=157.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc-C-
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDE-FTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC-G- 397 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~-g- 397 (720)
...+.+..++|++++.+++.. .|+. ..++.--..+...+ .++.+......+++.. +.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334455567788888888775 3433 33444444445556 4888888888887765 44566676666666665 6
Q ss_pred CHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--
Q 005000 398 DVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGD--------KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM-- 464 (720)
Q Consensus 398 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 464 (720)
++++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++++..+ -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 788999999998754 5667776665555555555 89999999998643 366778877777777776
Q ss_pred -----hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC-----
Q 005000 465 -----VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL--------------------NEALEVIKNM-PM----- 513 (720)
Q Consensus 465 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~eA~~~~~~~-~~----- 513 (720)
+++++++++++... .+-|...|+.+-.++.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 68888888887632 234677788777788877764 3444555444 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHH
Q 005000 514 --KPNSIVWGALLGACRVHRDAEMAEMAAKQIL-ELDPDNEAVYVLLC 558 (720)
Q Consensus 514 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 558 (720)
.+....+..|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2577888999999999999999999999987 67887655444433
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.00073 Score=67.46 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=53.6
Q ss_pred HhcCChh-HHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCc----------HHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 324 LRVNRFR-EALTLFREMQTSNIRPDEFTI-VSILTACANLGA----------LELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 324 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
.+.|.++ +|+.++..+... .|+..|. +.--..+...+. ++.+..++..+.... +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445543 677777777764 4544332 211111111111 334444444444432 233444444444
Q ss_pred hhhhcC--CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC
Q 005000 392 MYCKCG--DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGH-GDKSLDMFSQMLRA 443 (720)
Q Consensus 392 ~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~ 443 (720)
.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.++++++.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 444444 25555555555532 244455554444444554 35555555555554
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.3e-05 Score=81.72 Aligned_cols=164 Identities=7% Similarity=-0.097 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHHhcCChhhHHHHHHHHHHH---cCCCc-cHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEV----TYVGVLSACTHTGMVDEGREYFADMTIQ---HGIEP-NEA 486 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~ 486 (720)
++..+...|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+++..+++..... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888888765521 112221 2222233344568888888888776432 22222 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC----c
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-----P--MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDP---DN----E 551 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~ 551 (720)
.+..+...|...|++++|.+++++. . .+| ...++..++..|...|++++|...+++++...+ ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999998875 1 223 245778888899999999999999999887532 22 2
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+..++.++...|+|++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788888999999999887766643
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=1.8e-05 Score=84.85 Aligned_cols=120 Identities=8% Similarity=0.013 Sum_probs=75.3
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTH 461 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 461 (720)
+..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++.+++..+. .| +..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44566677788888888888877642 35667777777777788888888888777775 33 34566667777777
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL--LGRAGHLNEALEVIK 509 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~eA~~~~~ 509 (720)
.|++++|.+.|+++.+...- +...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777776533211 22233333333 666666666666666
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=6.9e-06 Score=71.93 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM--------PMKPN-SIVW----GALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.|..+..++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5556666666666666666665554 33785 5688 999999999999999999999999999998776
Q ss_pred HHHHH
Q 005000 554 YVLLC 558 (720)
Q Consensus 554 ~~~l~ 558 (720)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.9e-05 Score=68.90 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Ccc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPD------NEA 552 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 552 (720)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555543 00011 345566667777778888888877777765321 235
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888999988888877654
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.00087 Score=66.90 Aligned_cols=211 Identities=13% Similarity=0.041 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC----------HHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCC--
Q 005000 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD----------VEKAQRVFREML---RKDKFTWTAMIVGLAINGH-- 429 (720)
Q Consensus 365 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 429 (720)
+.|......++..+ +.+..+|+.--......|. ++++..+++.+. .++..+|+.-.-.+...|+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 45667777776654 3344455543333333332 678888888875 3477889888777778784
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------
Q 005000 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM-VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA---------- 498 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------- 498 (720)
+++++++++++.+.. +-|...|+.-...+...|. ++++++.+..+.+. -.-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 799999999999864 2366777777777788888 58999999998743 244677787777776665
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 499 ----GHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH-----------RDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 499 ----g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+.++++++.+++. ...| |...|+-+-+.+... +.++++++.++++++++|++.-.+..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5688999998887 4455 788898776666555 4688999999999999999865554444332
Q ss_pred ---hhcCChhHHHHHHHHHHh
Q 005000 562 ---AACNRWDNFRELRQMILD 579 (720)
Q Consensus 562 ---~~~g~~~~a~~~~~~m~~ 579 (720)
...|..++....+.++++
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 245777788888888765
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.4e-05 Score=66.17 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 529 (720)
+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566778888888888888876321 235677778888888888888888888876 4555 57788888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 005000 530 HRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.|++++|...++++++++|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999998764
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=1.7e-05 Score=67.54 Aligned_cols=109 Identities=7% Similarity=-0.055 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM----KPN----SIVWGA 522 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~----~p~----~~~~~~ 522 (720)
+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444555555555555544321 1223444555555555555555555555544 11 122 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
+...+...|++++|...++++++..| ++.....+..++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77778888888888888888888877 45555555555443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=9.3e-06 Score=68.23 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=69.5
Q ss_pred hcCChhhHHHHHHHHHHHcCC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 461 HTGMVDEGREYFADMTIQHGI-EP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
..|++++|+..|++.. +.+. .| +...+..+...|.+.|++++|++.+++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888775 2210 23 4567778888888999999999988887 3445 577888888999999999999
Q ss_pred HHHHHHHHhcCCCCcchHH
Q 005000 537 EMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~ 555 (720)
...++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999998866543
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=2.3e-05 Score=70.22 Aligned_cols=80 Identities=20% Similarity=0.079 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHhH
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE-AVYVLLCNI 560 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 560 (720)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467888889999999999999999887 4455 678899999999999999999999999999999987 555555544
Q ss_pred hhh
Q 005000 561 YAA 563 (720)
Q Consensus 561 ~~~ 563 (720)
..+
T Consensus 142 ~~~ 144 (162)
T 3rkv_A 142 TER 144 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=7.2e-06 Score=83.67 Aligned_cols=147 Identities=10% Similarity=0.001 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
...|..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999988774 454432 222333333332221 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh-hcCChhHH
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA-ACNRWDNF 570 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a 570 (720)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4445 67889999999999999999999999999999999999998888854 45677888
Q ss_pred HHHHHHHHhC
Q 005000 571 RELRQMILDR 580 (720)
Q Consensus 571 ~~~~~~m~~~ 580 (720)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=0.00033 Score=76.41 Aligned_cols=170 Identities=12% Similarity=-0.004 Sum_probs=137.8
Q ss_pred CCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 005000 397 GDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGH----------GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463 (720)
Q Consensus 397 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (720)
..-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+... -+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 344677888888753 356678877777777776 8999999999998642 25568888888888899
Q ss_pred --ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 005000 464 --MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG-HLNEALEVIKNM-PMKP-NSIVWGALLGACRVH-------- 530 (720)
Q Consensus 464 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 530 (720)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999997432 346778888888888999 899999999998 5566 788998888877663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhH
Q 005000 531 ------RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569 (720)
Q Consensus 531 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (720)
+.++++.+.++++++++|++..+|..+..++.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=3.2e-05 Score=63.70 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP---NSIVWGALLG 525 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~ 525 (720)
..+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 345556666777777777777777765321 234566777777888888888888888776 3334 4778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 005000 526 ACRVH-RDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 526 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.+... |++++|...++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 899999999999988888754
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.4e-05 Score=66.13 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYV 555 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 555 (720)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999998886 3444 67889999999999999999999999999999998 77888
Q ss_pred HHHhHhhhcCChhHHHHHHH
Q 005000 556 LLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~ 575 (720)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=4.4e-05 Score=78.71 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACR 528 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~ 528 (720)
..+..+...+...|++++|++.|++..+.. |+. ......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777665211 100 0001111111 1233 4678899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988763
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=0.00014 Score=61.85 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=68.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACR 528 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~ 528 (720)
+...+...|++++|...|+.+.+...-.+ ....+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34455666777777777776653221111 0145566677777777777777777765 22332 566777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
..|++++|...++++++..|+++.......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999999888765544443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=6.5e-05 Score=66.53 Aligned_cols=131 Identities=12% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc----cHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASII-PDE----VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP----NEAH 487 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~ 487 (720)
+..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++......-.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554432100 111 2445555566666666666666665542211111 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-------PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556666777777777777776654 1111 13456677777888888888888888887653
No 191
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.90 E-value=0.00016 Score=61.63 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
.|..+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|++++|++.++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555555555555555555543 222 2344445555555555555555555443
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.89 E-value=4.3e-05 Score=81.49 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----------------SIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
..|..+...|.+.|++++|...|++. ...|+ ...|..+..++.+.|++++|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34555666666666666666666655 22221 57889999999999999999999999999999
Q ss_pred CCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++.+|..++.+|...|++++|...++++.+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=3.9e-05 Score=81.69 Aligned_cols=128 Identities=7% Similarity=0.004 Sum_probs=89.9
Q ss_pred HHhcCChhhHHHHHHHHHHHcC--CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHG--IEP----NEAHYGCMVDLLGRAGHLNEALEVIKNM---------PMKPN-SIVWGA 522 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~-~~~~~~ 522 (720)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456667777666665543221 111 2456777777777777777777777665 23343 457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcc---hHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILE-----LDPDNEA---VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 586 (720)
|...|...|++++|+.+++++++ +.|+++. ....|..++..+|++++|+.++.+++++..+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986 3677654 4457888889999999999999999886544333
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=7.8e-05 Score=58.78 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677778888888888888888776 3334 6778888889999999999999999999999999999999998888
Q ss_pred hhcC
Q 005000 562 AACN 565 (720)
Q Consensus 562 ~~~g 565 (720)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=3.8e-05 Score=64.12 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 503 EALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 503 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3445 67788888889999999999999999999999999999999999999999999999998887653
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=4.9e-05 Score=77.46 Aligned_cols=152 Identities=9% Similarity=-0.015 Sum_probs=82.5
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (720)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44577888999999999999999998753222111 1222333344433221 13677788889999
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHHHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGA-CRVHRDAEMAEMA 539 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 539 (720)
|++++|+..++...+.. +.+...|..+..+|...|++++|.+.|++. .+.|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887321 336788899999999999999999999998 56664 4555555555 3455677888999
Q ss_pred HHHHHhcCCCCc
Q 005000 540 AKQILELDPDNE 551 (720)
Q Consensus 540 ~~~~~~~~p~~~ 551 (720)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999998764
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00021 Score=75.50 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=116.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPD----------------EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE- 485 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~- 485 (720)
.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45667888888888888777432211 1246778899999999999999999876544333333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------C
Q 005000 486 ---AHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELD------P 548 (720)
Q Consensus 486 ---~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p 548 (720)
.+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|...+++++... |
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 23344455556788999999988765 22333 4577889999999999999999999987641 2
Q ss_pred CCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.....+..++.+|...|+|++|...+++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2346888999999999999999999988754
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=6.8e-05 Score=60.77 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999988653
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=1.1e-05 Score=70.43 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=66.4
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD----------AEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666665 3344 56666666666665554 5699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 005000 564 CN-----------RWDNFRELRQMILDRG 581 (720)
Q Consensus 564 ~g-----------~~~~a~~~~~~m~~~~ 581 (720)
.| ++++|.+.+++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988743
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00015 Score=77.18 Aligned_cols=115 Identities=11% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHhcCCHHHHHHHHHhC------CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---chHH
Q 005000 494 LLGRAGHLNEALEVIKNM------PMK---PN-SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDNE---AVYV 555 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~------~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 555 (720)
.+...|++++|+.++++. .+. |+ ..+++.|..+|...|++++|+.++++++++ .|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466889999999998775 122 33 457899999999999999999999999874 45554 5678
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHh
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 626 (720)
.|+.+|..+|++++|..++++..+...+ . -...||...++..++.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988653211 1 113799999999888887766553
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00032 Score=57.55 Aligned_cols=66 Identities=11% Similarity=-0.073 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998764
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.45 E-value=0.00029 Score=73.79 Aligned_cols=116 Identities=12% Similarity=0.115 Sum_probs=85.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---cch
Q 005000 492 VDLLGRAGHLNEALEVIKNM------PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN---EAV 553 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~ 553 (720)
+.-+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677777777777654 12232 346788888899999999999999988863 4544 356
Q ss_pred HHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005000 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625 (720)
Q Consensus 554 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (720)
+..|+.+|..+|++++|..++++..+.-. +. -...||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999998865321 11 12379999999999988877765
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.41 E-value=0.0006 Score=54.05 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 515 PNSIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
+++..|..+..++...++ .++|...++++++++|+++.+...++.++.+.|++++|...++++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 477888888888765554 79999999999999999999999999999999999999999999987653
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.39 E-value=0.0028 Score=69.03 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCC----------hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGM----------VDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 496 (720)
...++|++.+++++.. .|+. ..|+.--.++...|+ ++++.+.++.+.+.. +-+...|+.-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3457889999999985 5655 456666666666666 899999999997432 346778888888899
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc-------
Q 005000 497 RAG--HLNEALEVIKNM-PMKP-NSIVWGALLGACRVHR-DAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC------- 564 (720)
Q Consensus 497 ~~g--~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 564 (720)
+.| ++++++++++++ ...| +..+|+.-.......| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 4455 7899999999999999 899999999999999999999999999998874
Q ss_pred -------CChhHHHHHHHHHHh
Q 005000 565 -------NRWDNFRELRQMILD 579 (720)
Q Consensus 565 -------g~~~~a~~~~~~m~~ 579 (720)
++++++.+.++.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877765
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.0012 Score=56.99 Aligned_cols=115 Identities=9% Similarity=-0.023 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
++.++|++.|++..+.| .|+.. +...+...+.+++|.++|++..+ . -++..+..|..+|.+-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCC--------
Confidence 34566666666666655 23322 44444455555556666655542 1 23344444444444400
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCC
Q 005000 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRG 581 (720)
Q Consensus 508 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 581 (720)
...+++++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 72 --------------------g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 --------------------YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------------------CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 0044555555555555444 234455555555555 555555555555555443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.37 E-value=0.0002 Score=62.52 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCc
Q 005000 501 LNEALEVIKNM-PMKP-NSIVWGALLGACRVH-----------RDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+++|+..|++. .+.| +..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 45667766665 4555 456777777777665 589999999999999999975
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.33 E-value=0.00058 Score=56.68 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
++...|++.. ...| +...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666654 2233 4666777777788888888888887776 3344 5677888888888888999999888888
Q ss_pred HhcCCC
Q 005000 544 LELDPD 549 (720)
Q Consensus 544 ~~~~p~ 549 (720)
+++.|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 888775
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.23 E-value=0.00083 Score=52.62 Aligned_cols=65 Identities=28% Similarity=0.290 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988763
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.00031 Score=73.48 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---cchHHHHHh
Q 005000 498 AGHLNEALEVIKNM---------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN---EAVYVLLCN 559 (720)
Q Consensus 498 ~g~~~eA~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 559 (720)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|++ ...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666553 12232 356788888888888888888888888863 4544 356788999
Q ss_pred HhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHH
Q 005000 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618 (720)
Q Consensus 560 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 618 (720)
+|..+|++++|..++++..+.-.+ . -...||...++...|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV-A-----------------HGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH-H-----------------cCCCChHHHHHHHHHh
Confidence 999999999999999888653211 1 1136888877776554
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.11 E-value=0.0054 Score=52.77 Aligned_cols=108 Identities=7% Similarity=0.001 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHhccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHH
Q 005000 395 KCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGR 469 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 469 (720)
-.+++++|.+.|++..+. +.... +...|...+..++|++.|++..+.| +......+...|.. .+++++|.
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 346789999999988544 44445 7777777788899999999999875 56677777777877 78899999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNM 511 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~ 511 (720)
++|++.. +. -++..+..|..+|.. .+++++|.+.+++.
T Consensus 82 ~~~~~Aa-~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 82 QYYSKAC-GL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHH-cC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9998876 33 345556666666666 56666666666554
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0028 Score=54.61 Aligned_cols=90 Identities=9% Similarity=0.013 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCccc
Q 005000 515 PNSIVWGALLGACRVHR---DAEMAEMAAKQILELD-P-DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 589 (720)
++..+.-.+..++.+.+ +.++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 57777778888888877 5668888888888887 6 4567888888888899999999988888876
Q ss_pred EEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcc
Q 005000 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630 (720)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 630 (720)
..|...++..+.+.+...+++.|.+
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2456677777777777778887764
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.98 E-value=0.0084 Score=60.04 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++.+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444444445555555555555555542 34445555555555555555555544433
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.94 E-value=0.0027 Score=50.71 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSI-VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677788888888888876 3445 566 788888889999999999999999999999987766
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.005 Score=64.27 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM---------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 550 (720)
.+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.++++++++ .|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45556666666666666666666554 23344 356788888889999999999988888863 6776
Q ss_pred cchH
Q 005000 551 EAVY 554 (720)
Q Consensus 551 ~~~~ 554 (720)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0027 Score=50.73 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEA-VYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999999 99999999999999999999999987643
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.73 E-value=0.0073 Score=48.43 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666666666666542 1123455556666666666666666666554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.63 E-value=0.011 Score=61.63 Aligned_cols=70 Identities=13% Similarity=-0.011 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM---------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILE-----LDPDN 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 550 (720)
.+++.+..+|...|++++|+.+++++ +..|+ ..+++.|...|...|++++|+..++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555555555666666665555544 23343 35678888888888888888888888886 36776
Q ss_pred cchHH
Q 005000 551 EAVYV 555 (720)
Q Consensus 551 ~~~~~ 555 (720)
+.+-.
T Consensus 410 p~~~~ 414 (429)
T 3qwp_A 410 SLIED 414 (429)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.097 Score=59.90 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHH
Q 005000 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334 (720)
Q Consensus 255 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (720)
..++..+.+.|..++|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 5555666666666666655431 1 111233456677777777766553 44678888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc
Q 005000 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 335 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
.|.++.. |..+...+...++.+....+-..+...|. ++.-...|.+.|++++|.+++.++
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8877642 22333334445555555555444444331 334445566677777777765544
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.50 E-value=6.7e-05 Score=76.25 Aligned_cols=447 Identities=11% Similarity=0.096 Sum_probs=236.6
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 005000 63 GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142 (720)
Q Consensus 63 g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (720)
++++.|...-++...|.+ |..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+..+.
T Consensus 39 ~~ldRa~eyA~~~n~p~V--Ws~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEPAV--WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCCCC--SSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCccH--HHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344555544444444544 777888888888888777655321 366678888888888888888777776665
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC------------
Q 005000 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK------------ 210 (720)
Q Consensus 143 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------ 210 (720)
+. ..++.+-+.|+-+|++.+++.+-++.+. .||+.--..+..-+...|.++.|.-+|..+...
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 54 3456667788888888887766433332 234444444444444445444444444332110
Q ss_pred --------CCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005000 211 --------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--- 279 (720)
Q Consensus 211 --------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 279 (720)
.-.-+..||..+-.+|...+.+..|...--.++-..-. ...++..|-+.|.+++-+.+++.-..
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 01235668888888888888877665543333332111 12356667778888777777776442
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----C-------CccchHHHHHHHHhcCChhHHHHHHHHHHHC------
Q 005000 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPE----R-------DYVLWTAMIDGYLRVNRFREALTLFREMQTS------ 342 (720)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 342 (720)
.....++-|.-.|+|- +.++-.+.++..-. | ....|.-++-.|.+-.+++.|... |.+.
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~ 336 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWK 336 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCC
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhcc
Confidence 3555666666666654 23333333332211 1 445788888888888888877543 2211
Q ss_pred -----C---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCH
Q 005000 343 -----N---IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414 (720)
Q Consensus 343 -----g---~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 414 (720)
. -.+|...|-..+.-|....- ..-..++.-+ ...+.+ +..+.++.|.|++.-....+..+...|.
T Consensus 337 h~~Fkdii~KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~ 409 (624)
T 3lvg_A 337 EGQFKDIITKVANVELYYRAIQFYLEFKP-LLLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNN 409 (624)
T ss_dssp GGGGTTTGGGCSCSHHHHHHHHHHTTSCC-TTSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCC
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhCh-HHHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhH
Confidence 0 01233333333333332110 0000000000 000111 1233444444444444444444444444
Q ss_pred HHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 415 FTWT-AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 415 ~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
..-| ++-..|....+++ +...-+.+|-.-..+.-|.++ +++ +-.+.-..-..
T Consensus 410 ~aVNeAln~L~IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL-----EkH---eL~eFRrIAA~ 462 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL-----EKH---ELIEFRRIAAY 462 (624)
T ss_dssp HHHHHHHHHHHHHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH-----HTC---SSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHH-------------------HHHHHHHHhccccHHHHHHHH-----hhC---chHHHHHHHHH
Confidence 3333 3444455555443 222222222222223323222 121 22233334456
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.|.+.++|+++.++.++=.+-.| .+......|+.+.++++++-.++.+- ...+....-.|...=+.+-+.++
T Consensus 463 LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 78889999999887765432222 23445567777777777777766543 34666666666666666666664
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.46 E-value=0.044 Score=45.19 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=92.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHHH
Confidence 3566666666666655421 33334444433333334444444444332111 1 23467777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 506 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
..+-.+.. +.....-.+......|+.++-..++..++..+|.++.....++++|.+.|+..+|.++++++-++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77666642 44555667788899999999999999987778888999999999999999999999999999999985
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.40 E-value=0.012 Score=56.53 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=71.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHhHhhhc-CChhH
Q 005000 501 LNEALEVIKNM-PMKPN---SIVWGALLGACRV-----HRDAEMAEMAAKQILELDPDN-EAVYVLLCNIYAAC-NRWDN 569 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 569 (720)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 56676 5678888888888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 005000 570 FRELRQMILDRGIKKTPG 587 (720)
Q Consensus 570 a~~~~~~m~~~~~~~~~~ 587 (720)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664454
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.036 Score=55.50 Aligned_cols=144 Identities=8% Similarity=0.042 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHh---cC-Ch-hhHH---HHHHHHH
Q 005000 411 RKDKFTWTAMIVGLA--INGH---GDKSLDMFSQMLRASIIPDE-VTYVGVLSACTH---TG-MV-DEGR---EYFADMT 476 (720)
Q Consensus 411 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-~~-~~a~---~~~~~m~ 476 (720)
..+...|...+.+.. ..+. ..+|+.+|++.++. .|+. ..+..+..++.. .+ .. .... +.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 447788888886654 3343 47899999999984 6775 445544444431 11 11 1111 1122111
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.....+.++..|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..+ +|.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 01122456788888887788889999999999998 4668888888888889999999999999999999999864 444
Q ss_pred HH
Q 005000 556 LL 557 (720)
Q Consensus 556 ~l 557 (720)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.11 E-value=0.03 Score=44.08 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=54.8
Q ss_pred CccHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 482 EPNEAHYGCMVDLLGRAGH---LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566777777777765554 68888888887 4566 56777778888999999999999999999999984
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.00 E-value=0.038 Score=44.52 Aligned_cols=73 Identities=16% Similarity=0.060 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-----P----MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.-+..|...+.+.|+++.|...++.. + -.+....+..|..++.+.|+++.|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445555566666666666655554 0 11346678889999999999999999999999999998776555
Q ss_pred HH
Q 005000 557 LC 558 (720)
Q Consensus 557 l~ 558 (720)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.98 E-value=0.14 Score=58.48 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=24.2
Q ss_pred hhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
..++|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33455555555554443 23445555555555555555555555554
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.74 E-value=0.041 Score=45.51 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 515 PNSIVWGALLGACRVHRDAEM---AEMAAKQILELD-P-DNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|+..+--.+.+++.+.++... ++.+++.+++.+ | ......+.|+-.+.+.|+|++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 455555554443 3 2333444555555555555555555555443
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.64 E-value=0.0022 Score=65.42 Aligned_cols=238 Identities=11% Similarity=0.019 Sum_probs=171.5
Q ss_pred ChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 005000 47 NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126 (720)
Q Consensus 47 ~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 126 (720)
.+.+|+.|-.+ +...|++.+|...|= ...|...|..+|.+..+.|.+++-+..+.-.++. .-++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkA-qL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKA-QLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHH-TTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHH-HHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 46678888888 778888888887763 3456677889999999999999988877655543 234555578899999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC------------------------CCCee
Q 005000 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY------------------------KDDVV 182 (720)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------~~~~~ 182 (720)
+.+++.+-.++.. .|+..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9888765433321 3666667778888888899998888886543 14778
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 005000 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262 (720)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 262 (720)
+|-.+-.+|...+.+.-|.-.--.+.- .| .-+..++..|-..|.+++-..+++.-+... ......++.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 999999999999999887655544432 22 223446667888899998888887665321 346778888998998
Q ss_pred hcCCHHHHHHHHhhcCC-----------CCchhHHHHHHHHHhcCCHHHHHH
Q 005000 263 ACGEMGFALEIFGNIKN-----------KDVISWTAIVTGYINRGQVDMARQ 303 (720)
Q Consensus 263 ~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 303 (720)
|- +.++-.+.++..-. .....|.-++-.|.+-..++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 86 44555544443322 245679999999999999998754
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.56 E-value=0.049 Score=46.84 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 483 PNEAHYGCMVDLLGRAG---HLNEALEVIKNM-PMK-P--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
++..+.-.+..++.+.+ +.+++..++++. ... | ....+..|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444444555544 333555555444 112 3 2445667777889999999999999999999999865543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.6 Score=41.14 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=86.1
Q ss_pred hhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
.+...++|+++.|.++.+++ .+...|..+......+|+.+-|.+.|++... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788999998888776 5677899999999999999999988887543 333444566677776655
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
++-+... ..| -++.-...+.-.|+++++.+++.+.+.-|... -..+.+|..+.|.++.+.+
T Consensus 81 kla~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 5544332 222 13444555667888888888888875433221 2234467777777776554
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.11 E-value=0.56 Score=39.42 Aligned_cols=91 Identities=4% Similarity=-0.059 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCccc
Q 005000 514 KPNSIVWGALLGACRVHRD---AEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589 (720)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 589 (720)
.|+..+--.+.+++.+..+ ..+++.+++.++...|. .....+.|+-.+.+.|++++|++..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 3555555555566655553 34677777777776664 3455666777777777777777777776652
Q ss_pred EEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcc
Q 005000 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630 (720)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 630 (720)
.|.+.++..+-..+..+|.+.|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 355566666666666677777654
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.00 E-value=2.3 Score=37.39 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=23.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 005000 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307 (720)
Q Consensus 259 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 307 (720)
+....+|+++.|.++.+.+ .+...|..+.....+.|+++-|++.|..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445566666666665544 2333444444444444444444444433
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.92 E-value=0.19 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.000 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELD-------PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+..-...+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45566788899999999999999999999753 23456889999999999999999999998875
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.28 E-value=0.66 Score=38.25 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 483 PNEAHYGCMVDLLGRAGHLNE---ALEVIKNM-PMK-P--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~e---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
|+..+--.+..++.+..+..+ ++.+++.. ... | .......|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 445555555556666665544 56666654 212 3 2234456667899999999999999999999999866544
Q ss_pred H
Q 005000 556 L 556 (720)
Q Consensus 556 ~ 556 (720)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.29 Score=54.22 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=51.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
...|...|+++.|..+++++...-|.+..++..|+.+|...|+|+.|.-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3557889999999999999999999999999999999999999999999998874
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.87 E-value=0.47 Score=39.31 Aligned_cols=65 Identities=5% Similarity=-0.072 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 515 PNSIVWGALLGACRVHRD---AEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|+..+--.+.+++.+..+ ..+|+.+++.+++.+|. ....++.|+-.+.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444433 33556666666655553 244555666666666666666666665543
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.64 E-value=0.26 Score=47.28 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCH
Q 005000 466 DEGREYFADMTIQHGIEPN---EAHYGCMVDLLGRA-----GHLNEALEVIKNM-PMKPN--SIVWGALLGACRV-HRDA 533 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~-~g~~ 533 (720)
.+|...+++.. .+.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......+.. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 33454 45666777777773 7777777777776 45562 5666666776655 4888
Q ss_pred HHHHHHHHHHHhcCCC
Q 005000 534 EMAEMAAKQILELDPD 549 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~ 549 (720)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887776
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.08 E-value=4.5 Score=33.52 Aligned_cols=138 Identities=11% Similarity=-0.045 Sum_probs=84.2
Q ss_pred cCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
-.|..+++.++.....+.. +..-+|-+|--....-+-+...++++.+.. -|. ..+|++......+-
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHH
Confidence 3567777777777766642 333344444333333444444444444332 121 23444444444443
Q ss_pred hCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 005000 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380 (720)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 380 (720)
.+. .+....+..++.+..+|+-++-.+++.++.. +.+|++.....+..||.+.|+...+.+++..+-+.|++
T Consensus 86 ~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 332 2334456667788888888888888888654 34778888888888888889888888888888887753
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.91 E-value=10 Score=37.21 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhhHHHHHHHHh
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF----GEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
.+.++..-|.+.+++++|.+++-.. ...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456677788999999999886432 34567778877666655 44556788999888888887776
Q ss_pred cCCCch-----HHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHh
Q 005000 228 KLKDLD-----VGKRAHRYVKECK--IVPNLILENALTDMYAACGEMGFALEIFG 275 (720)
Q Consensus 228 ~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 275 (720)
....-+ -..+...+-.+.| ...|+.....+...|.+.+++.+|...|=
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 555322 1222233333333 33466777777788888888888877774
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.77 E-value=10 Score=36.93 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHh
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL----FGEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
.+.++..-|.+.+++++|.+++... ...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556777888999999999887442 3456677887776665 444556788899888888887766
Q ss_pred cCCCc-----hHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005000 228 KLKDL-----DVGKRAHRYVKECK--IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293 (720)
Q Consensus 228 ~~~~~-----~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 293 (720)
....- .-..+...+-.+.| ...|+.....+...|.+.|++.+|...|-.-...+...+..++.-+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 53321 22333333333333 23467777788888888888888877765322223444444443333
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.71 E-value=5.3 Score=33.90 Aligned_cols=98 Identities=14% Similarity=0.267 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChH----HHHHHHHH---HHhcCChhhHHHHHHHHH
Q 005000 410 LRKDKFTWTAMIVGLAINGHG------DKSLDMFSQMLRASIIPDEV----TYVGVLSA---CTHTGMVDEGREYFADMT 476 (720)
Q Consensus 410 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~ 476 (720)
...|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345788888888888888888 7888888887774 566531 22211111 123366777777776665
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.. +-.- ...|-....--.|.|++..|.+++.+
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 32 1111 33333333333444444444444443
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.55 E-value=18 Score=39.25 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEVTYV----GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 503 (720)
.+.+.|..+|....... ..+..... .+.......+...++...+.... .. .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-cc--CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999999887543 22332222 22223333443556666776653 22 2333333334444557899999
Q ss_pred HHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 504 ALEVIKNMPMKP-NSIVW-GALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 504 A~~~~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
|...|+.|+..+ +..-| .=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996443 22222 2234567788999999999999875
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.91 E-value=4.5 Score=31.31 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005000 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351 (720)
Q Consensus 291 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 351 (720)
.+...|++++|..+.+.+.-||.+.|-++... +.|..+++...+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34555666666666666666666666666543 5677777777776776665 4444443
No 243
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.53 E-value=4.2 Score=31.41 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005000 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 351 (720)
..+...|++++|..+.+.+.-||.+.|-++... +.|..+++...+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566777777777777777777777766543 6788888888887777776 4444444
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.52 E-value=0.71 Score=39.14 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+|.++|.++|+.++++...-+..+...+..-.++|+...|++++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 556666666666655533333444445555556666666666666665543
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.26 E-value=25 Score=39.87 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=64.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHHcCCCCChhHh--hHHhhhhhhcCC
Q 005000 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA--CANLGALELGEWVKTYIDKNKVKNDIFVG--NALIDMYCKCGD 398 (720)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~~~~~~~~~~--~~li~~y~~~g~ 398 (720)
++-.|+.+....++..+.+.. +......+..+ +...|+.+.+..+.+.+.... .|..... .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334455555555555554421 22222222222 234555555555555554421 2222111 233445666666
Q ss_pred HHHHHHHHHhccC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh-hhHHHHHHH
Q 005000 399 VEKAQRVFREMLR-K--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV-DEGREYFAD 474 (720)
Q Consensus 399 ~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~ 474 (720)
.....+++..+.. + ++...-.+.-|+...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6666656665532 1 22222222233344555555555555444432 33333222233333333333 455666665
Q ss_pred HH
Q 005000 475 MT 476 (720)
Q Consensus 475 m~ 476 (720)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 53
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.58 E-value=48 Score=37.57 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHhhCCCC----Cc--cchHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC---HHHH--HHHHHH
Q 005000 291 GYINRGQVDMARQYFDQMPER----DY--VLWTAMIDGYLRVNRFREALTLFREMQTSNI--RPD---EFTI--VSILTA 357 (720)
Q Consensus 291 ~~~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t~--~~ll~~ 357 (720)
|....|+.+++..+++.-... +. ..-..+.-|....|..++++.++.......- .-+ ...- ..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345567777777777665542 11 1223344455666666667776666554210 000 1111 111111
Q ss_pred H--hccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-C--HHHHHHHHHHHHHcCChH
Q 005000 358 C--ANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-D--KFTWTAMIVGLAINGHGD 431 (720)
Q Consensus 358 ~--~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~ 431 (720)
. ...++- .+...+..+....-. ......-+|.-.|.-.|+.+....++..+.+. + +.-.-++.-|+...|+.+
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 1 122232 223333333322110 00112223344455566666666666654322 2 222223334445667777
Q ss_pred HHHHHHHHHHHCCCCCCh-HHHH---HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 432 KSLDMFSQMLRASIIPDE-VTYV---GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 432 ~A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
.+..+.+.+... +|. .-|. .+.-+|+..|+.....+++..+.. ....++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777777653 222 2222 233456677777666667776652 2222333222222333345655555555
Q ss_pred HHhC
Q 005000 508 IKNM 511 (720)
Q Consensus 508 ~~~~ 511 (720)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 5544
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.98 E-value=5 Score=34.69 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~ 514 (720)
.+.---+...|.+.|++++|+.+++.+|.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344344666777777777777777777533
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.27 E-value=38 Score=34.21 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=24.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
++..+...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444555555555555444432211111 233444444555555555555544433
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.06 E-value=6.8 Score=30.50 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666666777778899999999999999999999999999999875544 34556776664
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.85 E-value=9.3 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
..+--|.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3455566778888888888888888888888875443
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.10 E-value=3.6 Score=41.97 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++.++...|+++++...+++++..+|-+...+..|+.+|.+.|+..+|.+.|+...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566677777777777777777777777777777777777777777777666543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.51 E-value=4.5 Score=34.98 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=65.5
Q ss_pred CCCCCChH--HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-------HHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005000 443 ASIIPDEV--TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-------EAHYGCMVDLLGRAGHLNEALEVIKNM-- 511 (720)
Q Consensus 443 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~eA~~~~~~~-- 511 (720)
.|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+ ..++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555443 4445566777888888888877765533333343 235566778888888888888887764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 512 -----PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 512 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..|+. ..++. ..... ..-..+ +.+...-+.++.+|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--ccccc----ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 10110 00000 000111 223456677999999999999999998764
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.15 E-value=25 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
...-|.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 344566789999999999999999999999985543
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.34 E-value=50 Score=32.35 Aligned_cols=179 Identities=13% Similarity=0.028 Sum_probs=102.4
Q ss_pred HHhcCCH---HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHH-
Q 005000 261 YAACGEM---GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLF- 336 (720)
Q Consensus 261 y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~- 336 (720)
-...|++ -+|.+.++ ++..-|.+.+++++|.+++-. -...+.+.|+...|-++-
T Consensus 22 ~I~~G~y~~~YEAHQ~~R-----------Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~ 79 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETR-----------LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAV 79 (336)
T ss_dssp HHHHCCHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHH-----------HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 3455666 56655544 556667777777777766432 234456667766555544
Q ss_pred ---HHHHHCCCCCCHHHHHHHHHHHhccCc--HHH---HHHHHHHHHHcC--CCCChhHhhHHhhhhhhcCCHHHHHHHH
Q 005000 337 ---REMQTSNIRPDEFTIVSILTACANLGA--LEL---GEWVKTYIDKNK--VKNDIFVGNALIDMYCKCGDVEKAQRVF 406 (720)
Q Consensus 337 ---~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~---a~~i~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~ 406 (720)
+-..+.++++|..+...++..+..... .+. ......+-.+.| ..-|+.....+...|.+.+++.+|+.-|
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 445567788888887777777665542 222 122233333433 3346677778889999999999998887
Q ss_pred HhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 407 REMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 407 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
---.++.+..+..|+.-+...+...++ |...-.+++ -|...+++..|..+++...
T Consensus 160 ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 160 VLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 421222235555554444333322211 111222222 3556678888888776655
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.13 E-value=5.5 Score=44.11 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=29.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005000 259 DMYAACGEMGFALEIFGNIKN--K-DVISWTAIVTGYINRGQVDMARQYFDQMP 309 (720)
Q Consensus 259 ~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 309 (720)
+.+...|+++.|+.+-++... | +-.+|..|...|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344455666666666655443 2 44566666666666666666666666654
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.12 E-value=10 Score=29.58 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=37.4
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 510 NMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+...+|-.+
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 345679999999999999999999999999998876544334455444
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.28 E-value=52 Score=31.95 Aligned_cols=180 Identities=12% Similarity=0.094 Sum_probs=107.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHH----H
Q 005000 261 YAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL----F 336 (720)
Q Consensus 261 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 336 (720)
-...|++=+|.+.++ ++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 344566666666544 566667777777777776532 23445667776666554 4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCC--CCChhHhhHHhhhhhhcCCHHHHHHHHHhc
Q 005000 337 REMQTSNIRPDEFTIVSILTACANLG-----ALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 337 ~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
+-..+.+++++..+...++..+.... ...-......+-.+.|- .-++.....+...|.+.|++.+|+.-|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 55556788888888888877765532 22233334444444432 246777888899999999999999877633
Q ss_pred cCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 410 LRKDKFTWTAMIVGLAIN---GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 410 ~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
...|...+..|+.-.... |...++--.+ -.+++ -+...|++..|..+|+...+
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222455555555444433 4433321111 11122 34566888888888887653
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.80 E-value=14 Score=28.51 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 005000 129 IAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEME 208 (720)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 208 (720)
...++|.-+-+.+...+- ...+.-.-+..+...|++++|..+.+...-||.++|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456777777777766553 33333333466778999999999999999999999988865 47788888888887777
Q ss_pred HCCCCCCHhhH
Q 005000 209 RKGVLPTSVTI 219 (720)
Q Consensus 209 ~~g~~p~~~t~ 219 (720)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 765 3333333
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.41 E-value=16 Score=37.06 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH----HHcCCCccHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT----IQHGIEPNEAHY 488 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 488 (720)
..++..+...|++.+|+..++.+.... +-+...+..++.++...|+..+|.+.|+... ++.|++|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445566677788888887777776642 3355677788888888888888888877654 245777776543
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.69 E-value=73 Score=32.83 Aligned_cols=185 Identities=9% Similarity=0.048 Sum_probs=118.4
Q ss_pred cCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHh----hhhhhc
Q 005000 326 VNRFREALTLFREMQT-----SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI----DMYCKC 396 (720)
Q Consensus 326 ~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li----~~y~~~ 396 (720)
.|++++|++.+..+.+ .+..........++..|...++++...+....+.+..-.. ......++ +.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3788999988877654 2345567778889999999999998877766655432121 11222333 222223
Q ss_pred CCHH--HHHHHHHhccC---C-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh---HHHHHHHHHH
Q 005000 397 GDVE--KAQRVFREMLR---K-------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDE---VTYVGVLSAC 459 (720)
Q Consensus 397 g~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~ 459 (720)
...+ .-..+.+.... . .......+...|...|++.+|.+++.++... |..+.. ..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22233332211 1 1123455778889999999999999998752 322221 3566677889
Q ss_pred HhcCChhhHHHHHHHHHHHc-CCC--cc--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 460 THTGMVDEGREYFADMTIQH-GIE--PN--EAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~-~~~--p~--~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
...+++.+|..++.++.... ... |+ ...|.+++..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999998874211 222 22 356788888999999999998887664
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.51 E-value=17 Score=42.93 Aligned_cols=123 Identities=7% Similarity=-0.092 Sum_probs=73.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CC------------------
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP--MK------------------ 514 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~------------------ 514 (720)
++..|...+..+-+.++..-. +.++..--.+..+|...|++++|.+.|++.. +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 444455555555554433211 1222222344555666666666666666651 10
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-----hHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 515 -----PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA-----VYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 515 -----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
.-..-|..++..+.++|.++.+.+..+.+++..+.+.. .|..+-..+...|+|++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 01123456667788888888888888888876543222 4566777788889999998888777665443
No 262
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.54 E-value=38 Score=36.85 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=23.0
Q ss_pred HHHHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCC
Q 005000 485 EAHYGCMVDL-----LGRAGHLNEALEVIKNMPMKPN 516 (720)
Q Consensus 485 ~~~~~~li~~-----~~~~g~~~eA~~~~~~~~~~p~ 516 (720)
..++..|.++ +.+.|++++|++.++++++=|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455544433 4789999999999999976663
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.87 E-value=19 Score=33.86 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=63.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 502 (720)
...+.|..++|++....-++.. +-|...-..++..++-.|++++|.+-++... .+.|+...-..+..-+.++.+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHHHHHH
Confidence 3445667777777776666652 2244444556666777777777777776654 23444332222212222221111
Q ss_pred HHHHHHHhC--C-CCCCHHHHH-HHHHH--HHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 503 EALEVIKNM--P-MKPNSIVWG-ALLGA--CRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 503 eA~~~~~~~--~-~~p~~~~~~-~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
+ ++|..- | +--++.-|. .|+.+ ....|+.++|..+-.++++.-|..++
T Consensus 82 ~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 82 K--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp H--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred H--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1 122221 1 111222343 34444 34568888888888888887776544
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.48 E-value=1.1e+02 Score=33.17 Aligned_cols=378 Identities=10% Similarity=-0.032 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCC
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 231 (720)
.-+.-+..+.+.+++..-...+.. +..+...--....+....|+..+|....+.+-..|- ........++..
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~------ 145 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSV------ 145 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHH------
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHH------
Confidence 334455666777888888887766 333444444456677778888888777777655542 122333444444
Q ss_pred chHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005000 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311 (720)
Q Consensus 232 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 311 (720)
..+.|...+..++. -+......|+...|..+...+..........++..+.+-..+ ....... .+
T Consensus 146 ----------~~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~ 210 (618)
T 1qsa_A 146 ----------WRASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GA 210 (618)
T ss_dssp ----------HHHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CC
T ss_pred ----------HHHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CC
Confidence 44433332222222 235556677788888877766322211223333333322222 2222221 11
Q ss_pred Ccc---chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCcHHHHHHHHHHHHHcCCCCChh
Q 005000 312 DYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS----ILTACANLGALELGEWVKTYIDKNKVKNDIF 384 (720)
Q Consensus 312 ~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 384 (720)
+.. ....-+.-+.+. +.+.|...|....... ..+...... +.......+....+...+....... .+..
T Consensus 211 ~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred ChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 111 111122333333 7889999998886543 223332222 2223334442333444444443332 3333
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRKD---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
...-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+++... . +|-.++. -.+
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~ 359 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQR 359 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHH
Confidence 34444555567899999999999997542 222333455778899999999999998752 2 3444442 233
Q ss_pred cCChhhHHHHHHHHHHHcCCCcc---H-H--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPN---E-A--HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~---~-~--~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
.|..-.. . ...+.+. . . .--.-+..+...|...+|...+....-..+......+.......|..+.
T Consensus 360 Lg~~~~~-~-------~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 360 IGEEYEL-K-------IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp TTCCCCC-C-------CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCC-C-------CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHH
Confidence 3321100 0 0000010 0 0 1112345677899999998887766323344444455555677888888
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHhHhhhcCChhHHH
Q 005000 536 AEMAAKQILELDP---DNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 536 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
++....+....+. .-|..|..+..-+++.-.++...
T Consensus 432 ~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 432 SVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 8776654332220 11234555555555555555443
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.55 E-value=76 Score=37.42 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=81.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---------------------
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--------------------- 412 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------------------- 412 (720)
++..+...+..+.+.++.... +.+....-.+..+|..+|++++|...|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555555544332 233333345667788888888888888776211
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--H--HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc
Q 005000 413 -----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE--V--TYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 413 -----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 483 (720)
-..-|.-++..+.++|.++.++++-+..++....-+. . .|..+..++...|++++|...+-.+. ... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~--~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTP--L 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSS--S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHH--H
Confidence 0123556667777777777777777766653211111 1 35666777777788888877776664 222 2
Q ss_pred cHHHHHHHHHHHHhcCCHH
Q 005000 484 NEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~ 502 (720)
-......+|..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 3445555666666555543
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.10 E-value=16 Score=30.09 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 431 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
-+..+-++.+....+.|+.......|.+|.+.+++..|.++|+-++.+. .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 3455556666677789999999999999999999999999999987544 444566776664
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.14 E-value=34 Score=26.54 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=55.8
Q ss_pred CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005000 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMP 309 (720)
Q Consensus 230 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 309 (720)
...++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||..+|-++-.. +.|..+++...+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345667777777666653 333333445667889999999999999999999999877654 5677777777665555
Q ss_pred CCCc
Q 005000 310 ERDY 313 (720)
Q Consensus 310 ~~~~ 313 (720)
..+.
T Consensus 97 ~sg~ 100 (116)
T 2p58_C 97 RSQD 100 (116)
T ss_dssp TCCC
T ss_pred hCCC
Confidence 4433
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.92 E-value=58 Score=29.08 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=7.3
Q ss_pred CChhHHHHHHHHHHhcCC
Q 005000 148 SSVFVQNALISTYCLCGE 165 (720)
Q Consensus 148 ~~~~~~~~li~~y~~~g~ 165 (720)
++..+-...+..+.+.|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444443
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.99 E-value=67 Score=28.64 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHHHhcCC
Q 005000 448 DEVTYVGVLSACTHTGM 464 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~ 464 (720)
+...-...+.++...+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333344444444443
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=67.26 E-value=93 Score=31.60 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=10.6
Q ss_pred cccCChHHHHHHhccCC
Q 005000 60 SEKGDMKYACKVFRKIP 76 (720)
Q Consensus 60 ~~~g~~~~A~~~f~~~~ 76 (720)
+..|+++-++.+++.-.
T Consensus 22 a~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 22 SFMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHHTCHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHcCC
Confidence 45677777666666533
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.00 E-value=27 Score=28.85 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=38.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 508 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
+-.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+...+|-.+
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 33446779999999999999999999999999998876543334455444
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.68 E-value=11 Score=35.47 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+.|.+++|++.+..- ..+| |...-..|...++..|++++|..-++-+.+++|+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3445555554444332 2233 3333334444455555555555555555555544
No 273
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.15 E-value=69 Score=31.00 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=45.5
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 507 VIKNMPMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 507 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+|....++|. ..++.+-++.+.+++|+..|..+.++++++.|... ..+.|.+++..-.+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3455567763 45678888889999999999999999999998522 3456777777665544
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.30 E-value=87 Score=29.17 Aligned_cols=111 Identities=11% Similarity=0.043 Sum_probs=50.6
Q ss_pred ccccCChHHHHHHhccCCCCCcc----hHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCChH
Q 005000 59 CSEKGDMKYACKVFRKIPRPSVC----LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT--FPFLLKGFTRDIAVE 132 (720)
Q Consensus 59 y~~~g~~~~A~~~f~~~~~~~~~----~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 132 (720)
.++.|+++..+.+++.-..++.. -++.| ...++.|+. ++++.+++.|..|+... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 86 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCcHH-HHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence 35667777666666654332221 22333 333444554 33444445555443321 112233333445543
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhcCCC
Q 005000 133 FGKELHCHVLKFGFDSSVF--VQNALISTYCLCGEVDMARGIFDVSYK 178 (720)
Q Consensus 133 ~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~ 178 (720)
+.+.+++.|..++.. ...+.+...+..|+.+-...+++....
T Consensus 87 ----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 87 ----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp ----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 334444555444322 112334444566777777666665443
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.79 E-value=95 Score=27.29 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=25.6
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
+..+-...+.+..+.|+.+....+...+..++...-...+.++...|. .++...+.++..
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333333344444444433322223333334444444444555555544 345555555544
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.31 E-value=1e+02 Score=33.42 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh---
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK--- 395 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~--- 395 (720)
....+.-.|+++.|+..+-.. ...|.+.+...+.-+.-++- ...++..-. + .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 455566789999999877644 34556666665555443332 111111100 1 11 2225567777764
Q ss_pred cCCHHHHHHHHHhccCCC
Q 005000 396 CGDVEKAQRVFREMLRKD 413 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~ 413 (720)
..++.+|.+.|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 678888888887764433
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.85 E-value=1.7e+02 Score=29.96 Aligned_cols=173 Identities=10% Similarity=0.103 Sum_probs=103.3
Q ss_pred CCHHHHHHHHhhCCC-----CCc----cchHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh----cc
Q 005000 296 GQVDMARQYFDQMPE-----RDY----VLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTACA----NL 361 (720)
Q Consensus 296 g~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~----~~ 361 (720)
|+++.|.+.+..+.+ .|. .....++..|...|+++...+.+..+... |..+.. ...++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 678888877654432 232 23567888899999999988877766543 322222 233333322 22
Q ss_pred CcHHHHHHHHHHHHHc------C-CCC---ChhHhhHHhhhhhhcCCHHHHHHHHHhccC----C-C----HHHHHHHHH
Q 005000 362 GALELGEWVKTYIDKN------K-VKN---DIFVGNALIDMYCKCGDVEKAQRVFREMLR----K-D----KFTWTAMIV 422 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~------~-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~ 422 (720)
...+... ....... | +-. ...+...|...|...|++.+|..++.++.. . + +..+...+.
T Consensus 108 ~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2222111 1111111 1 111 123345688999999999999999998741 1 1 346667778
Q ss_pred HHHHcCChHHHHHHHHHHHH----CCCCCCh--HHHHHHHHHHHhcCChhhHHHHH
Q 005000 423 GLAINGHGDKSLDMFSQMLR----ASIIPDE--VTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
.|...+++.+|..++.+... ....|+. ..+...+..+.+.+++.+|.+.|
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999999988643 2222322 24455555666777777776655
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.30 E-value=28 Score=35.75 Aligned_cols=96 Identities=8% Similarity=-0.069 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHH--
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQH-GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVWGAL-- 523 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~l-- 523 (720)
+...+..-+.+.|++++|.+.|.++.... +...-...+-.++.++...+++..+...++++ ...++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55567777888888888888888886322 22233566777777777888888887777765 122232222111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhc
Q 005000 524 --LGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 524 --l~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+-.+...+++..|-..|-.++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11234556777766666655543
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.24 E-value=1.7e+02 Score=29.41 Aligned_cols=286 Identities=11% Similarity=0.085 Sum_probs=136.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--------CCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC---CCccch-----
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKN--------KDVISWTAIVTGYINR-GQVDMARQYFDQMPE---RDYVLW----- 316 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~---~~~~~~----- 316 (720)
...|...|.+.|+.++...++..... +.......++..+... +..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766554 1222334455554442 222222222222211 111223
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhHhhH
Q 005000 317 -TAMIDGYLRVNRFREALTLFREMQTSNIRPDE-----FTIVSILTACANLGALELGEWVKTYIDKN--KVKNDIFVGNA 388 (720)
Q Consensus 317 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~ 388 (720)
.-++..|...|++.+|++++.++.+.=-+.|. ..+..-+..+...+++..++..+...... .+.+++.+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a- 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG- 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH-
Confidence 24677888888888888888887753111121 12333334455555555555555544321 1112221111
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHC---CCCCC---hHHHHHHHHHHHh
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLA-INGHGDKSLDMFSQMLRA---SIIPD---EVTYVGVLSACTH 461 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~---g~~p~---~~t~~~ll~a~~~ 461 (720)
.++.+ -...+. ..+++.+|...|-+..+. -..|. ...|..+ .+..
T Consensus 181 ~i~~~--------------------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl- 232 (394)
T 3txn_A 181 ALDLQ--------------------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM- 232 (394)
T ss_dssp HHHHH--------------------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-
T ss_pred HHHHH--------------------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-
Confidence 11111 011223 344555554444443210 00121 1233222 2222
Q ss_pred cCChhhHHHHHH-HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCCHHH
Q 005000 462 TGMVDEGREYFA-DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIV---WGALLGACRVHRDAEM 535 (720)
Q Consensus 462 ~g~~~~a~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~---~~~ll~~~~~~g~~~~ 535 (720)
.++..+-..++. .....+ ..|+...+..++.+| +.+++.+..++++.. .+..|+.. |..|....+.
T Consensus 233 ~~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~------ 304 (394)
T 3txn_A 233 LGQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE------ 304 (394)
T ss_dssp TTCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH------
T ss_pred cCCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH------
Confidence 233333333332 211123 456666666666664 567887777777776 24456553 2333322222
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
..+.+++ .|-....+..++....- ..++++..+.+|...|.
T Consensus 305 --~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 --QNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --HHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred --HHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 2333333 45555566666666543 57889999999988775
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.05 E-value=86 Score=29.18 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCee----eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005000 154 NALISTYCLCGEVDMARGIFDVSYKDDVV----TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215 (720)
Q Consensus 154 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 215 (720)
++.+...++.|+++....+++.....+.. -++ .+...++.|+.+ +++.+.+.|..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 45566667888888888888765544322 122 333444556643 4444455565544
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.45 E-value=92 Score=27.82 Aligned_cols=79 Identities=10% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNM-PMKPNSI---VWGALLGACRVHRDAEMAEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+...|... ..+.|+. .|-..+..| ..++...+..+|+.+.. +.-.-+..|...+..+...|++.+|.++++.-
T Consensus 63 c~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 63 CLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444443 2445554 444444443 24456778888888875 45666778889999999999999999999887
Q ss_pred HhCCCc
Q 005000 578 LDRGIK 583 (720)
Q Consensus 578 ~~~~~~ 583 (720)
.+++-+
T Consensus 142 I~~~A~ 147 (202)
T 3esl_A 142 AENNCR 147 (202)
T ss_dssp HHTTCB
T ss_pred HHcCCc
Confidence 776643
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.37 E-value=75 Score=30.14 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-CeeeHHHHHHHHHhCCChhHHHHHH
Q 005000 155 ALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKRVKQFDETRKLF 204 (720)
Q Consensus 155 ~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~ 204 (720)
+.+...+..|+.+-+..+++..... +...-.+.+...+..|+.+-+.-++
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 3444445566666666666554332 2212223333344555554443333
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.91 E-value=71 Score=32.69 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=28.0
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
+...+.+.|.++|+++.|.+.|.++... -...|-.+|..+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445556666666666666666555211 1223444444445555555555555443
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.80 E-value=1.2e+02 Score=26.61 Aligned_cols=39 Identities=5% Similarity=0.062 Sum_probs=16.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 360 (720)
..+.++.+.|. +++...+..+... ++...-...+.+..+
T Consensus 157 ~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 157 SAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 33444444443 3344444444432 344444444444443
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.04 E-value=89 Score=28.14 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=8.2
Q ss_pred cccCChHHHHHHhcc
Q 005000 60 SEKGDMKYACKVFRK 74 (720)
Q Consensus 60 ~~~g~~~~A~~~f~~ 74 (720)
++.|+++..+.+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 355566555555543
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.24 E-value=1.1e+02 Score=28.94 Aligned_cols=21 Identities=0% Similarity=-0.018 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHhcC
Q 005000 156 LISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 156 li~~y~~~g~~~~A~~~f~~~ 176 (720)
.+...+..|+.+-+..+++..
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCC
Confidence 344444555555555555443
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.01 E-value=57 Score=29.50 Aligned_cols=17 Identities=6% Similarity=-0.068 Sum_probs=9.2
Q ss_pred ccccCChHHHHHHhccC
Q 005000 59 CSEKGDMKYACKVFRKI 75 (720)
Q Consensus 59 y~~~g~~~~A~~~f~~~ 75 (720)
.++.|+++-+..+++.-
T Consensus 49 A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 49 AAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHcC
Confidence 34556666555555543
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.19 E-value=79 Score=25.93 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=43.7
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGH--GDKSLDMFSQMLRASIIPDE 449 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 449 (720)
...++.-|...|+.++|.+.++++..| ..+...++..++-+.+. .+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 356788888999999999999999655 23344555555555432 35677788888777654443
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.84 E-value=32 Score=32.01 Aligned_cols=89 Identities=10% Similarity=-0.109 Sum_probs=46.2
Q ss_pred HcCCCchHHHHHHHHhHhCCCCCCcc-------cHHHHHHHHh--ccCChHHHHHHHHHHHHhC---------CCCChhH
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRPDNY-------TFPFLLKGFT--RDIAVEFGKELHCHVLKFG---------FDSSVFV 152 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~~ 152 (720)
++.|+.+....+++.+.+.|..++.. -.+.+..|+. +.|+.+.++.+++.-...+ +......
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~ 92 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR 92 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEE
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccC
Confidence 45677777666666666655555432 2234444432 5566666666665543311 1000002
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC
Q 005000 153 QNALISTYCLCGEVDMARGIFDVSYKD 179 (720)
Q Consensus 153 ~~~li~~y~~~g~~~~A~~~f~~~~~~ 179 (720)
..+.+...+..|+.+-+..+++....+
T Consensus 93 g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 119 (260)
T 3jxi_A 93 GQTALHIAIERRCKHYVELLVEKGADV 119 (260)
T ss_dssp SBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCc
Confidence 223344455667777777777655443
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.81 E-value=59 Score=28.54 Aligned_cols=108 Identities=7% Similarity=-0.071 Sum_probs=48.0
Q ss_pred cccCChHHHHHHhccCC-C---CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCccc---HHHHHHHHhccCChH
Q 005000 60 SEKGDMKYACKVFRKIP-R---PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYT---FPFLLKGFTRDIAVE 132 (720)
Q Consensus 60 ~~~g~~~~A~~~f~~~~-~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~ 132 (720)
+..|+.+....++..-. . +|..-++.|..+ ++.|+. ++++.+++.|..++... .+. +...+..|+.+
T Consensus 13 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~ 86 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSP-YLYAGAQGRTE 86 (201)
T ss_dssp HHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHH
Confidence 45677777777776543 2 233334444433 334443 34444555555544322 222 22333445554
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhcC
Q 005000 133 FGKELHCHVLKFGFDSSVF--VQNALISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 133 ~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~ 176 (720)
..+.+++. .+..++.. ...+.+...++.|+.+-+..+++..
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 44333321 22222111 1112233344566666666666544
No 291
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=46.32 E-value=6.8 Score=24.26 Aligned_cols=17 Identities=29% Similarity=0.688 Sum_probs=12.0
Q ss_pred CCccccc-CCCcCCCCCC
Q 005000 703 KTRFHHF-KHGSCSCKDY 719 (720)
Q Consensus 703 ~~~~h~~-~~g~csc~~~ 719 (720)
|-.=|.. .+|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444555 5899999976
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.08 E-value=1.3e+02 Score=27.09 Aligned_cols=24 Identities=4% Similarity=-0.229 Sum_probs=12.4
Q ss_pred HcCCCchHHHHHHHHhHhCCCCCC
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRPD 114 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p~ 114 (720)
++.|+.+.+..+++.+.+.|..++
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 445665555555555555554443
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.08 E-value=1.3e+02 Score=26.80 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=43.6
Q ss_pred CccchHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHcCC
Q 005000 312 DYVLWTAMIDGYL---RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA-----LELGEWVKTYIDKNKV 379 (720)
Q Consensus 312 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~i~~~~~~~~~ 379 (720)
+...+..+|+++. +-.+.+.|+-++-+|++.| .|....-..++.+....|. +..+...++.....|.
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344556666665 4588999999999999999 7777776777777665552 3333444444445554
No 294
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.93 E-value=2.2e+02 Score=26.51 Aligned_cols=18 Identities=17% Similarity=-0.051 Sum_probs=7.3
Q ss_pred CChhHhhHHhhhhhhcCC
Q 005000 381 NDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~ 398 (720)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444444444444444
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.62 E-value=1.7e+02 Score=26.17 Aligned_cols=19 Identities=5% Similarity=0.100 Sum_probs=9.3
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 005000 157 ISTYCLCGEVDMARGIFDV 175 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~ 175 (720)
+...+..|+.+-...+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555555555544
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.46 E-value=79 Score=25.90 Aligned_cols=61 Identities=13% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---ccchHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCC
Q 005000 287 AIVTGYINRGQVDMARQYFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFREMQTSNIRPD 347 (720)
Q Consensus 287 ~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 347 (720)
.++.-|...|+.++|.+.++++..+. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34444555555555555555544331 1222333334443322 3455666666666664433
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.99 E-value=1.7e+02 Score=24.73 Aligned_cols=48 Identities=6% Similarity=0.005 Sum_probs=34.9
Q ss_pred HHHHHHHHHhc--CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 536 AEMAAKQILEL--DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 536 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
+..+|+.+... .-.-+..|...+..+...|++.+|.++++.-++++-+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 56677777654 4456677778888888888888888888877766543
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.59 E-value=1.7e+02 Score=26.32 Aligned_cols=26 Identities=8% Similarity=-0.033 Sum_probs=13.8
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC
Q 005000 190 GYKRVKQFDETRKLFGEMERKGVLPT 215 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~p~ 215 (720)
..++.|+.+.+..+++.+...|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34455666655555555555554443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.73 E-value=81 Score=26.75 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=43.3
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGH--GDKSLDMFSQMLRASIIPDE 449 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 449 (720)
.+.++.-|...|+.++|.+.++++..| ..+...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456788898999999999999999655 23344555555555332 34577778888776654433
No 300
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=36.16 E-value=1.3e+02 Score=22.70 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhhhhhhhhhHHHHHHHHHhhcCCCCCcEEEEcccccccccchhhh
Q 005000 609 QTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688 (720)
Q Consensus 609 ~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~ 688 (720)
...+|+..+++-..+++..|+.||...+- .+..-+-+|.+-.-|| ...|+-=+-||++-
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~G--------~eayef~~e~v~~e~g-----~e~~~l~~s~LkV~-------- 72 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILFG--------REAYNFLSNLLKKEME-----EEGPFTHVSNIKIE-------- 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEC--------HHHHHHHHHHHHHHHT-----CCCCCCEETTEEEE--------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEc--------HHHHHHHHHHHhHhhc-----cccchhhccCceEE--------
Confidence 45678888998889999999999976552 1223334555555554 22333333445443
Q ss_pred hcccccceeEEEecCCcc
Q 005000 689 LVSMVYDREVIVRDKTRF 706 (720)
Q Consensus 689 ~~s~~~~~~~~~~d~~~~ 706 (720)
+-+-.|.+-||-|++-.
T Consensus 73 -~ieELG~DAVV~DSK~L 89 (103)
T 2pk8_A 73 -ILEELGGDAVVIDSKVL 89 (103)
T ss_dssp -ECGGGTTEEEEECTTTT
T ss_pred -EHHhcCCceEEEehhhh
Confidence 34455667777777644
No 301
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=35.88 E-value=13 Score=23.30 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=11.2
Q ss_pred cccccccccchhhh
Q 005000 675 KNLRMCVDCHRMAK 688 (720)
Q Consensus 675 ~nl~~~~~~~~~~~ 688 (720)
-+.|+|.+|+.-+-
T Consensus 15 ~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 15 IQYRVCEKCGKPLA 28 (44)
T ss_dssp CCEEECTTTCCEEE
T ss_pred ccchhhcccCCcch
Confidence 38999999997554
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.86 E-value=2e+02 Score=24.90 Aligned_cols=147 Identities=11% Similarity=0.009 Sum_probs=70.6
Q ss_pred HcCCCchHHHHHHHHhHhCCCCC---CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCC
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRP---DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV--QNALISTYCLCGE 165 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~ 165 (720)
+..|+.+....++..- +..+ |..-.+.+.. .+..|+.+ +.+.+++.|..++... ..+.+...+..|+
T Consensus 13 ~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT---TYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHTTCHHHHHHHHTCT---TCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHcC---CCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 4567766655554322 1122 2222333333 34556654 4455556676554322 2234455567788
Q ss_pred hHHHHHHHhcCC-C---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC---CHhhHHHHHHHHhcCCCchHHHH
Q 005000 166 VDMARGIFDVSY-K---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLP---TSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 166 ~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
.+-+..+++... . .|..-++.+ ...++.|+.+-+..+ .+.| ..+ |..-.+.+..++........-.+
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLL----LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHH----HHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHH----HHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 888888885432 2 222222222 334455665444333 3333 222 22223334444433322333466
Q ss_pred HHHHHHHcCCCCC
Q 005000 238 AHRYVKECKIVPN 250 (720)
Q Consensus 238 ~~~~~~~~g~~~~ 250 (720)
+.+.+++.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 7777777776654
No 303
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.45 E-value=3.7e+02 Score=26.93 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=7.9
Q ss_pred HHHHHHHCCCCCCh
Q 005000 436 MFSQMLRASIIPDE 449 (720)
Q Consensus 436 l~~~m~~~g~~p~~ 449 (720)
+.+.+.+.|..|+.
T Consensus 359 iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 359 IVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHHTTCCSCC
T ss_pred HHHHHHHCcCCCCC
Confidence 44445566666654
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.12 E-value=2.2e+02 Score=24.37 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 536 AEMAAKQILE--LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 536 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
...+|+.+.. +.-.-+..|...+..+...|++.+|.++++.-++++-+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4556777665 34556678888888888899999999988887776644
No 305
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.99 E-value=2.4e+02 Score=25.03 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=9.2
Q ss_pred cccCChHHHHHHhcc
Q 005000 60 SEKGDMKYACKVFRK 74 (720)
Q Consensus 60 ~~~g~~~~A~~~f~~ 74 (720)
++.|+.+....+++.
T Consensus 11 ~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 11 AKENDVQALSKLLKF 25 (232)
T ss_dssp HHTTCHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHh
Confidence 455666666666654
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.48 E-value=1.2e+02 Score=28.01 Aligned_cols=23 Identities=17% Similarity=-0.041 Sum_probs=18.0
Q ss_pred HHHHHHcCCCchHHHHHHHHhHh
Q 005000 86 MIKGYSRIDSHKNGVLIYLDMLK 108 (720)
Q Consensus 86 li~~~~~~g~~~~A~~l~~~m~~ 108 (720)
-+..+....++++|+++.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 36778888899999988877653
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.25 E-value=1.2e+02 Score=29.31 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCC
Q 005000 154 NALISTYCLCGEVDMARGIFDVSYKDD 180 (720)
Q Consensus 154 ~~li~~y~~~g~~~~A~~~f~~~~~~~ 180 (720)
..+|.=|...|+.++|...++++..|.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 456667777778888888777776553
No 308
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.81 E-value=1.9e+02 Score=25.75 Aligned_cols=108 Identities=9% Similarity=-0.065 Sum_probs=49.2
Q ss_pred cccCChHHHHHHhccCC----CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcc---cHHHHHHHHhccCChH
Q 005000 60 SEKGDMKYACKVFRKIP----RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY---TFPFLLKGFTRDIAVE 132 (720)
Q Consensus 60 ~~~g~~~~A~~~f~~~~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~ 132 (720)
++.|+++....+++.-+ .+|..-++.|..+ +..|+. ++++.+.+.|..++.. -.+.+ ...+..|+.+
T Consensus 14 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~ 87 (231)
T 3aji_A 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHT----EIVEFLLQLGVPVNDKDDAGWSPL-HIAASAGXDE 87 (231)
T ss_dssp HHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcH----HHHHHHHHhCCCCCCcCCCCCCHH-HHHHHcCHHH
Confidence 46677777777765432 2333334444333 334443 3344444555444332 22222 2233445543
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhcCC
Q 005000 133 FGKELHCHVLKFGFDSSVF--VQNALISTYCLCGEVDMARGIFDVSY 177 (720)
Q Consensus 133 ~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~ 177 (720)
+.+.+++.|..++.. ...+.+...+..|+.+-+..+++...
T Consensus 88 ----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 88 ----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 334444555443321 11223344455666666666665443
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.80 E-value=1.6e+02 Score=24.87 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005000 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214 (720)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 214 (720)
|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444455555555554444444444
No 310
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=32.42 E-value=2.1e+02 Score=26.84 Aligned_cols=118 Identities=11% Similarity=0.022 Sum_probs=43.4
Q ss_pred hhHHhcccccccCChHHHHHHhcc--------------CCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcc
Q 005000 51 QNKLVTFCCSEKGDMKYACKVFRK--------------IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116 (720)
Q Consensus 51 ~~~ll~~~y~~~g~~~~A~~~f~~--------------~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 116 (720)
..+.+.+ .+..|+.+...+.... ...+|..-++.|..+ +..|+.+ +++.+++.|..++..
T Consensus 15 ~~~~lH~-Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A-a~~g~~~----~v~~Ll~~g~~~~~~ 88 (285)
T 3d9h_A 15 VPRGSHM-ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA-AIHGHQL----SLRNLISQGWAVNII 88 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCEE
T ss_pred HHHHHHH-HhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCc
Confidence 3445555 5666776666664322 112344445555444 4456543 444455556555432
Q ss_pred c--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhcCCC
Q 005000 117 T--FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV--QNALISTYCLCGEVDMARGIFDVSYK 178 (720)
Q Consensus 117 t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~ 178 (720)
. -.+.|...+..|+.+-+ +.+++.|..++... ..+-+...+..|..+-+..+++....
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence 2 11233333445665433 34445565443221 12233344556777777666665443
No 311
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.40 E-value=1.8e+02 Score=26.00 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=44.3
Q ss_pred CccchHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHHHHcCC
Q 005000 312 DYVLWTAMIDGYLR---VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA-----LELGEWVKTYIDKNKV 379 (720)
Q Consensus 312 ~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~i~~~~~~~~~ 379 (720)
+...+..+|+++.+ -.+.+.|+-++-+|++.|-.|....-..++.+.-..|. +..+...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 44456667777754 58899999999999999988877777777766655542 3333444444444443
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.18 E-value=75 Score=26.99 Aligned_cols=60 Identities=13% Similarity=0.290 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---ccchHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCC
Q 005000 287 AIVTGYINRGQVDMARQYFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFREMQTSNIRP 346 (720)
Q Consensus 287 ~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 346 (720)
.++.-|...|+.++|.+.++++..+. .+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34444444444444444444443331 1122233333333222 344556666666655443
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.18 E-value=43 Score=25.88 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=19.3
Q ss_pred CHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHH
Q 005000 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332 (720)
Q Consensus 297 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (720)
..+.|.++++.++.+.+.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 445555555555555555555555555544444433
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.12 E-value=3.7e+02 Score=26.01 Aligned_cols=53 Identities=13% Similarity=-0.029 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005000 293 INRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (720)
+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.....|..
T Consensus 61 ~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 61 CKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 33444444444444433332211122233334556665555555543333433
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.69 E-value=1.3e+02 Score=26.64 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 501 LNEALEVIKNMPMKPNSI--VW-----GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 501 ~~eA~~~~~~~~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
++.|+.+++.+...-+.. .. -..+..|.+.|.+++|.+++++.++..|.+...-..|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 456777777774332211 11 2334679999999999999999998877765544444444
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.39 E-value=1.4e+02 Score=31.30 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC--CccH--HH-HHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGI--EPNE--AH-YGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~--~~-~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
..++.+++.|.+.+.+++|..+..... +.. .++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567788888999999999999988652 211 1121 12 224566777888999998888775
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.83 E-value=3.8e+02 Score=25.71 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--hhhHHHHHHHHHHHcCCCcc
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM--VDEGREYFADMTIQHGIEPN 484 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~ 484 (720)
.+.++.-|...|+.++|.+.++++......| .+....+..+.-+.++ .+....++..+. +.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~-~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLW-KSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHH-HHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHH-HCCCCCH
Confidence 4566777777788888888887764211111 1233334444443322 334556666654 3344333
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.59 E-value=2.1e+02 Score=25.42 Aligned_cols=87 Identities=10% Similarity=-0.036 Sum_probs=41.2
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcC
Q 005000 87 IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF--VQNALISTYCLCG 164 (720)
Q Consensus 87 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g 164 (720)
+...++.|+.+....++..-...-..+|..-.+.+.. .+..|+.+. .+.+++.|..++.. ...+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 4445566777766666654322111223333333333 334555543 34444556544321 1223344445667
Q ss_pred ChHHHHHHHhcCCC
Q 005000 165 EVDMARGIFDVSYK 178 (720)
Q Consensus 165 ~~~~A~~~f~~~~~ 178 (720)
+.+-+..+++....
T Consensus 85 ~~~~v~~Ll~~g~~ 98 (231)
T 3aji_A 85 XDEIVKALLVKGAH 98 (231)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 77766666665443
No 319
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.36 E-value=1.8e+02 Score=26.03 Aligned_cols=172 Identities=7% Similarity=-0.091 Sum_probs=87.8
Q ss_pred HHHcCCCchHHHHHHHHhHhC-CCCCCc---ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-----C--hhHHHHHH
Q 005000 89 GYSRIDSHKNGVLIYLDMLKS-DVRPDN---YTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDS-----S--VFVQNALI 157 (720)
Q Consensus 89 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~--~~~~~~li 157 (720)
.-++.|+.+... .+++. |..++. .-.+. +...+..|+.+.++.+++ .|..+ + .....+.+
T Consensus 9 ~A~~~g~~~~v~----~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 9 LAAKENDVQALS----KLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp HHHHTTCHHHHH----HHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCCHH
T ss_pred HHHHcCCHHHHH----HHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHH----cCchhccccccccCCCCcCHH
Confidence 335566654433 34443 544433 22333 444445677765555554 33221 1 01223345
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCe----------------eeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh--H
Q 005000 158 STYCLCGEVDMARGIFDVSYKDDV----------------VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT--I 219 (720)
Q Consensus 158 ~~y~~~g~~~~A~~~f~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~ 219 (720)
...+..|+.+-+..+++.....+. .-++.+. ..+..|+.+ +++.+.+.|..++... -
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g 154 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS-FAACVGSEE----IVRLLIEHGADIRAQDSLG 154 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTS
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCCCCC
Confidence 555678888888888876554332 2333333 334455543 4444555666554321 1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCCCC---------hHHHHHHHHHHHhcCCHHHHHHHHh
Q 005000 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPN---------LILENALTDMYAACGEMGFALEIFG 275 (720)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---------~~~~~~li~~y~~~g~~~~A~~~~~ 275 (720)
.+.+...+..|+.+.+..+.+.+++.|..++ ..- ..-+...++.|+.+-+..+++
T Consensus 155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g-~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG-LTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS-CCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC-CCHHHHHHHcCCHHHHHHHHh
Confidence 2344555667788878788888888775432 111 122344445566555555544
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.00 E-value=1.5e+02 Score=27.21 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=19.6
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.++.......+..+.|.|+.++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34455555666777788888888877644
No 321
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.67 E-value=2.1e+02 Score=23.73 Aligned_cols=50 Identities=8% Similarity=-0.012 Sum_probs=24.5
Q ss_pred cccCChHHHHHHhccCC----CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCC
Q 005000 60 SEKGDMKYACKVFRKIP----RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPD 114 (720)
Q Consensus 60 ~~~g~~~~A~~~f~~~~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 114 (720)
++.|+++..+.+++.-+ .++..-++.|..+ +..|+. ++++.+++.|..++
T Consensus 16 ~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 69 (165)
T 3twr_A 16 AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-AGYNRV----SVVEYLLQHGADVH 69 (165)
T ss_dssp HHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTT
T ss_pred HHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH-HHcChH----HHHHHHHhcCCCCC
Confidence 56677777777765422 1222223344333 344543 34444555555544
No 322
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.40 E-value=3.2e+02 Score=24.34 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc
Q 005000 429 HGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 483 (720)
...++.++|..|...|+--.. ..|......+...|++++|.++|+.-. +.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI-~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA-ENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcc
Confidence 355666777777666654443 345555555666667777777666654 344455
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.91 E-value=1.8e+02 Score=25.76 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=34.7
Q ss_pred hHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005000 316 WTAMIDGYL---RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362 (720)
Q Consensus 316 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 362 (720)
+..+|+++. +-.+.+.|+-++-+|++.|-.|....-..++.+.-..|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344566654 45789999999999999998887777666666655544
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.40 E-value=3.6e+02 Score=24.44 Aligned_cols=53 Identities=9% Similarity=-0.169 Sum_probs=28.9
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhh-------HHHHHHHHh--cCCCchHHHHHHHHH
Q 005000 190 GYKRVKQFDETRKLFGEMERKGVLPTSVT-------IVLVLSACA--KLKDLDVGKRAHRYV 242 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 242 (720)
..++.|+.+....+++.+...|..++... .+.+..+.. +.|+.+.++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34566777777777776666665555332 233333332 456666666555543
No 325
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.95 E-value=2.2e+02 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=10.8
Q ss_pred HhCCChhHHHHHHHHHHHCC
Q 005000 192 KRVKQFDETRKLFGEMERKG 211 (720)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g 211 (720)
++.|+.+.+..+++.....+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 44556655555555554444
No 326
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.75 E-value=1.6e+02 Score=28.38 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=44.7
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 507 VIKNMPMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 507 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+|....++|. ..++.+-++.+.+++++..|..+.++++++.|... ..+.|.+++..-.+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3445566663 45677888889999999999999999999988521 2455777777665544
No 327
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=24.71 E-value=13 Score=19.87 Aligned_cols=14 Identities=36% Similarity=1.127 Sum_probs=9.4
Q ss_pred cccCCCcC--CCCCCC
Q 005000 707 HHFKHGSC--SCKDYW 720 (720)
Q Consensus 707 h~~~~g~c--sc~~~w 720 (720)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36777877 566665
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.62 E-value=6.1e+02 Score=28.93 Aligned_cols=85 Identities=6% Similarity=-0.143 Sum_probs=47.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCC-C---------------
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKP-N--------------- 516 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p-~--------------- 516 (720)
++..|...|.++-+.++.. -.+.++..--.+..+|...|++++|.+.|+++ ++.+ +
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5566667777665554332 12223333234566777888888888888776 2211 0
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 517 -------SIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 517 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
..-|..++..+.+++-++.+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11234444555566666666666666664
No 329
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.42 E-value=71 Score=22.00 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=25.0
Q ss_pred chHHHHHHHHhHhCCCCCCcccHHHHHHHH-hcc
Q 005000 96 HKNGVLIYLDMLKSDVRPDNYTFPFLLKGF-TRD 128 (720)
Q Consensus 96 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~ 128 (720)
.++|.+.|.+|++..-.+..-||..+++.+ +..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 468899999998755456677899998888 543
No 330
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.28 E-value=1.8e+02 Score=26.95 Aligned_cols=99 Identities=9% Similarity=-0.070 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCC-------CcccHHHHHHHHh--ccCChHHHHHHHHHHHHh-----
Q 005000 79 SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-------DNYTFPFLLKGFT--RDIAVEFGKELHCHVLKF----- 144 (720)
Q Consensus 79 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~----- 144 (720)
|..-++.|..+ ++.|+.+.+..+++...+.+... |..-.+.+..++. +.|+.+-++.+++.-...
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 33344444444 45666666666666555444322 2333444444443 346666666666554321
Q ss_pred ----CCC-CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 005000 145 ----GFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179 (720)
Q Consensus 145 ----g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 179 (720)
+.. .|..-. +.+...+..|+.+-+..+++.....
T Consensus 89 ~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga~~ 127 (273)
T 2pnn_A 89 FVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGADV 127 (273)
T ss_dssp HHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 111 111222 2333445667777777777655443
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.99 E-value=5.5e+02 Score=25.24 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=40.8
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRKD---KFTWTAMIVGLAINGH--GDKSLDMFSQMLRASIIPDEV 450 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 450 (720)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4667777888888888888888886653 3344444455544333 245667777777766544433
No 332
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.22 E-value=1.9e+02 Score=30.07 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
-+|.|+..-...++.|...|.++ .+.| +...||.|.-.....|+.-.|.-.|-+.+....+.+.+...|..++.
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34555555555566666666555 2333 34455555555555555555555555555544444455555554443
No 333
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.00 E-value=5.3e+02 Score=24.36 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=113.0
Q ss_pred hhHHhcccccccCChHHHHHHhccCC----CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcc---cHHHHHH
Q 005000 51 QNKLVTFCCSEKGDMKYACKVFRKIP----RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY---TFPFLLK 123 (720)
Q Consensus 51 ~~~ll~~~y~~~g~~~~A~~~f~~~~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~ 123 (720)
.+.|..+ ++.|+.+....++.... .+|..-++.|..+ +..|+.+ +++.+++.|..++.. -.+. +.
T Consensus 25 ~~~L~~A--~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~ 96 (351)
T 3utm_A 25 KDELLEA--ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA-AGYNRVR----IVQLLLQHGADVHAKDKGGLVP-LH 96 (351)
T ss_dssp HHHHHHH--HHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HH
T ss_pred chhHHHH--HHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCccCCCCCcH-HH
Confidence 3445554 57788888888886532 1333333444333 4456543 444455556554432 2223 33
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhcCCCCCeee---HH-------------
Q 005000 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFV--QNALISTYCLCGEVDMARGIFDVSYKDDVVT---WN------------- 185 (720)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~------------- 185 (720)
..+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++....++... .+
T Consensus 97 ~A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 97 NACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred HHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence 334456654 4444555565444321 1234445567788888887777654433211 00
Q ss_pred -------HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChH--HHHH
Q 005000 186 -------AMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI--LENA 256 (720)
Q Consensus 186 -------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 256 (720)
.-+...+..++.+....++..-.. ....+..-.+.+..++ ..+. ..-.++.+.+.+.|..++.. ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~-~~~~-~~~~~~~~~Ll~~g~~~~~~~~~g~t 249 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAV-ASLH-PKRKQVAELLLRKGANVNEKNKDFMT 249 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHH-HCCS-TTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHH-HHhC-ccHHHHHHHHHHcCCCcCCcCCCCCC
Confidence 001112233333333322221100 0111111112222222 2211 12245566666666554322 1123
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005000 257 LTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYFDQMPER 311 (720)
Q Consensus 257 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 311 (720)
.+...++.|+.+-+..+++.-... |...++. +...+..|+.+-+.-+++.-..+
T Consensus 250 ~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~-L~~A~~~~~~~~v~~Ll~~gad~ 306 (351)
T 3utm_A 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA-LHRAALAGHLQTCRLLLSYGSDP 306 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHcCcHHHHHHHHHcCCCC
Confidence 345556778887777776654332 2222233 33445667877777777664443
No 334
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.65 E-value=3.3e+02 Score=24.12 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHhCCCCChh--HhhHHhcccccccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCC-
Q 005000 37 SQTIKLGLLTNPT--VQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD- 110 (720)
Q Consensus 37 ~~~~~~g~~~~~~--~~~~ll~~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g- 110 (720)
..+++.|..++.. ...+.+.. .++.|+++-+..+++.-.. ++...++.+..+ +..|+.+ +++.+.+.|
T Consensus 28 ~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~----~~~~Ll~~~~ 101 (237)
T 3b7b_A 28 HMLVQAGANIDTCSEDQRTPLME-AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA-AKKGHYE----VVQYLLSNGQ 101 (237)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH-HHTTCHH----HHHHHHTTTC
T ss_pred HHHHHcCCCcCccCCCCCCHHHH-HHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH-HHcCCHH----HHHHHHhCCC
Confidence 4455566544321 11222333 3566777777777654322 232233333333 3444433 334444444
Q ss_pred CCCC---cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhcCCC
Q 005000 111 VRPD---NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVF--VQNALISTYCLCGEVDMARGIFDVSYK 178 (720)
Q Consensus 111 ~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~ 178 (720)
..++ ..-.+. +...+..++.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+++....
T Consensus 102 ~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 169 (237)
T 3b7b_A 102 MDVNCQDDGGWTP-MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169 (237)
T ss_dssp CCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred CCcccCCCCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 2222 222222 22333445543 334444555443322 122334444555666666666655443
No 335
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.37 E-value=4.5e+02 Score=23.30 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=43.3
Q ss_pred eeHHHHHHHHH---hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCC-----chHHHHHHHHHHHcCCC
Q 005000 182 VTWNAMFSGYK---RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD-----LDVGKRAHRYVKECKIV 248 (720)
Q Consensus 182 ~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 248 (720)
...--+|+++. +..+++.|+-.+.+|++.| .|....=..++.+.-..|. +..|...++.....|.+
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445666664 5589999999999999999 7665555556666555553 33445555555666654
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.25 E-value=1.9e+02 Score=24.06 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
+....+.+.+.+.+..-+-...-..++..+...+..-.|.++++.+.+.+...+..|.--.|..+...|.+.+
T Consensus 2 ~~~~~~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 2 AAHELKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp --CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
No 337
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.16 E-value=5.9e+02 Score=24.50 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=6.4
Q ss_pred ccCcHHHHHHHHH
Q 005000 360 NLGALELGEWVKT 372 (720)
Q Consensus 360 ~~~~~~~a~~i~~ 372 (720)
..|..+.++.+++
T Consensus 253 ~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 253 RAAMVLLTKELLQ 265 (364)
T ss_dssp HTCCHHHHHHHHH
T ss_pred HhChHHHHHHHHH
Confidence 3455555544444
Done!