Query 005002
Match_columns 720
No_of_seqs 343 out of 1747
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 16:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4151 Myosin assembly protei 100.0 7.3E-99 2E-103 852.5 33.6 678 1-719 1-742 (748)
2 cd06401 PB1_TFG The PB1 domain 99.8 3.8E-21 8.2E-26 166.1 8.9 66 262-327 2-72 (81)
3 KOG0553 TPR repeat-containing 99.8 6.3E-20 1.4E-24 192.2 14.3 124 44-173 77-200 (304)
4 KOG0547 Translocase of outer m 99.8 9.3E-18 2E-22 183.9 31.6 129 32-169 101-231 (606)
5 cd06402 PB1_p62 The PB1 domain 99.8 1.4E-19 3E-24 159.6 10.1 76 262-338 2-86 (87)
6 KOG4234 TPR repeat-containing 99.7 1.1E-16 2.4E-21 159.8 14.5 127 45-173 92-219 (271)
7 KOG0543 FKBP-type peptidyl-pro 99.7 1.8E-16 3.8E-21 172.0 16.7 139 31-173 193-342 (397)
8 TIGR00990 3a0801s09 mitochondr 99.6 5.9E-13 1.3E-17 154.3 36.8 112 35-155 116-227 (615)
9 KOG0548 Molecular co-chaperone 99.6 2.5E-15 5.3E-20 166.9 14.0 119 46-170 356-474 (539)
10 smart00666 PB1 PB1 domain. Pho 99.6 1.7E-15 3.7E-20 131.0 9.8 76 261-336 2-80 (81)
11 PF00564 PB1: PB1 domain; Int 99.6 4E-15 8.7E-20 129.1 9.9 79 260-338 1-83 (84)
12 KOG4648 Uncharacterized conser 99.6 9.4E-15 2E-19 155.1 11.9 125 38-168 87-211 (536)
13 cd06407 PB1_NLP A PB1 domain i 99.6 8.7E-15 1.9E-19 128.4 9.7 76 262-337 2-81 (82)
14 cd06398 PB1_Joka2 The PB1 doma 99.6 1.5E-14 3.3E-19 129.1 10.9 78 262-339 2-89 (91)
15 KOG0551 Hsp90 co-chaperone CNS 99.6 1E-13 2.2E-18 147.1 18.7 115 46-162 79-193 (390)
16 cd06404 PB1_aPKC PB1 domain is 99.6 1.4E-14 3E-19 126.0 9.9 66 262-327 2-69 (83)
17 cd05992 PB1 The PB1 domain is 99.5 2.7E-14 5.8E-19 123.1 9.5 75 262-336 2-80 (81)
18 KOG0548 Molecular co-chaperone 99.5 3.2E-14 6.8E-19 158.2 11.5 113 48-166 2-114 (539)
19 PLN03088 SGT1, suppressor of 99.5 1.4E-13 3E-18 150.4 16.3 117 48-170 2-118 (356)
20 cd06408 PB1_NoxR The PB1 domai 99.5 3.3E-14 7.2E-19 125.2 8.0 67 260-327 2-68 (86)
21 PRK15359 type III secretion sy 99.5 3.8E-13 8.3E-18 128.7 15.5 114 51-170 27-140 (144)
22 KOG0550 Molecular chaperone (D 99.4 3.7E-13 8E-18 146.0 11.5 123 45-170 246-368 (486)
23 cd06396 PB1_NBR1 The PB1 domai 99.4 5.6E-13 1.2E-17 116.2 9.9 76 262-338 2-80 (81)
24 KOG0545 Aryl-hydrocarbon recep 99.4 3.8E-12 8.3E-17 130.8 13.9 140 30-173 162-316 (329)
25 KOG4626 O-linked N-acetylgluco 99.4 2.2E-12 4.8E-17 144.9 10.5 153 48-209 252-406 (966)
26 TIGR02552 LcrH_SycD type III s 99.3 3.1E-11 6.7E-16 111.6 15.6 115 49-169 18-132 (135)
27 TIGR00990 3a0801s09 mitochondr 99.3 7.4E-11 1.6E-15 136.9 18.1 151 47-206 330-482 (615)
28 cd06397 PB1_UP1 Uncharacterize 99.3 1.1E-11 2.5E-16 106.9 8.3 65 262-326 2-67 (82)
29 KOG0376 Serine-threonine phosp 99.3 5.4E-12 1.2E-16 139.6 7.5 120 47-172 3-122 (476)
30 PRK15363 pathogenicity island 99.3 1.3E-10 2.9E-15 113.3 15.8 115 47-167 34-148 (157)
31 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-10 3.3E-15 123.1 16.8 106 46-157 62-167 (296)
32 KOG4626 O-linked N-acetylgluco 99.2 1.2E-10 2.7E-15 131.1 12.8 143 47-198 353-497 (966)
33 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.9E-10 1.9E-14 98.3 14.5 113 49-164 3-118 (119)
34 KOG4642 Chaperone-dependent E3 99.2 1.2E-10 2.5E-15 119.7 9.8 100 46-151 8-107 (284)
35 PRK10370 formate-dependent nit 99.2 7.9E-10 1.7E-14 111.6 15.7 111 48-164 73-186 (198)
36 cd06403 PB1_Par6 The PB1 domai 99.1 1.8E-10 4E-15 99.3 8.8 74 262-337 2-78 (80)
37 TIGR02521 type_IV_pilW type IV 99.1 3E-09 6.4E-14 103.2 18.0 154 46-208 29-186 (234)
38 PRK15359 type III secretion sy 99.1 6.4E-10 1.4E-14 106.5 12.2 120 68-199 13-134 (144)
39 TIGR02521 type_IV_pilW type IV 99.1 7.1E-09 1.5E-13 100.5 17.8 121 48-174 65-187 (234)
40 KOG1155 Anaphase-promoting com 99.1 1.6E-09 3.4E-14 119.6 14.2 148 53-209 335-484 (559)
41 KOG1126 DNA-binding cell divis 99.1 3.4E-10 7.3E-15 128.9 9.3 131 48-184 421-553 (638)
42 COG3063 PilF Tfp pilus assembl 99.1 6.2E-09 1.4E-13 106.8 17.0 153 46-207 33-189 (250)
43 cd00189 TPR Tetratricopeptide 99.0 2.6E-09 5.7E-14 87.0 11.7 99 50-154 2-100 (100)
44 PRK12370 invasion protein regu 99.0 2.5E-09 5.4E-14 123.2 15.8 141 61-210 317-460 (553)
45 KOG0547 Translocase of outer m 99.0 2.3E-09 5.1E-14 118.8 14.2 156 45-209 323-480 (606)
46 PRK12370 invasion protein regu 99.0 3.7E-09 8.1E-14 121.8 16.7 121 49-175 339-460 (553)
47 PF13414 TPR_11: TPR repeat; P 99.0 7.9E-10 1.7E-14 91.5 8.0 66 86-153 3-69 (69)
48 KOG1126 DNA-binding cell divis 99.0 5.6E-10 1.2E-14 127.2 8.9 154 50-212 457-612 (638)
49 PRK02603 photosystem I assembl 99.0 9.4E-09 2E-13 100.5 16.3 107 46-155 33-153 (172)
50 TIGR03302 OM_YfiO outer membra 99.0 1.1E-08 2.5E-13 103.6 16.7 113 48-163 33-156 (235)
51 PF13414 TPR_11: TPR repeat; P 99.0 1.9E-09 4E-14 89.3 7.8 66 48-119 3-69 (69)
52 PF06552 TOM20_plant: Plant sp 99.0 8.2E-09 1.8E-13 102.7 13.1 97 434-561 6-108 (186)
53 PRK11189 lipoprotein NlpI; Pro 98.9 1.1E-08 2.3E-13 109.0 14.5 125 62-191 40-166 (296)
54 PRK10370 formate-dependent nit 98.9 1.7E-08 3.6E-13 102.1 15.1 118 61-184 52-174 (198)
55 PRK09782 bacteriophage N4 rece 98.9 1.1E-08 2.5E-13 124.8 16.3 145 53-207 581-727 (987)
56 CHL00033 ycf3 photosystem I as 98.9 3.8E-08 8.2E-13 95.7 16.6 108 46-156 33-154 (168)
57 PRK09782 bacteriophage N4 rece 98.9 2.4E-08 5.1E-13 122.1 18.6 153 51-213 545-699 (987)
58 PRK15174 Vi polysaccharide exp 98.9 1.9E-08 4.1E-13 118.4 16.8 148 53-209 217-370 (656)
59 PLN02789 farnesyltranstransfer 98.9 3.8E-08 8.2E-13 106.7 17.2 147 48-203 71-229 (320)
60 PRK15179 Vi polysaccharide bio 98.9 2.2E-08 4.8E-13 118.3 16.1 125 47-177 85-209 (694)
61 KOG0624 dsRNA-activated protei 98.9 8.1E-09 1.8E-13 110.6 11.2 113 48-166 38-153 (504)
62 PF12895 Apc3: Anaphase-promot 98.9 5E-09 1.1E-13 90.7 7.7 83 61-148 2-84 (84)
63 TIGR02552 LcrH_SycD type III s 98.8 3.5E-08 7.6E-13 91.2 12.6 110 69-184 4-115 (135)
64 KOG1125 TPR repeat-containing 98.8 7.9E-09 1.7E-13 116.5 9.1 112 53-170 435-556 (579)
65 PRK10803 tol-pal system protei 98.8 2.1E-07 4.6E-12 98.3 18.8 113 50-165 144-260 (263)
66 TIGR02917 PEP_TPR_lipo putativ 98.8 1.1E-07 2.4E-12 110.4 17.8 151 49-209 704-855 (899)
67 PRK15331 chaperone protein Sic 98.8 8.5E-08 1.8E-12 94.4 14.1 114 49-169 38-151 (165)
68 PRK15174 Vi polysaccharide exp 98.8 8.2E-08 1.8E-12 113.1 16.4 130 49-184 247-382 (656)
69 TIGR02917 PEP_TPR_lipo putativ 98.8 1.9E-07 4.1E-12 108.5 18.7 121 47-173 124-244 (899)
70 PF13429 TPR_15: Tetratricopep 98.8 2.7E-08 5.9E-13 104.0 10.6 122 49-176 147-268 (280)
71 cd06409 PB1_MUG70 The MUG70 pr 98.8 2.6E-08 5.6E-13 88.3 8.4 70 268-337 9-84 (86)
72 KOG1155 Anaphase-promoting com 98.8 1E-07 2.2E-12 105.5 14.3 121 49-175 365-485 (559)
73 PF13432 TPR_16: Tetratricopep 98.7 3.6E-08 7.9E-13 80.8 7.6 64 91-156 2-65 (65)
74 KOG0624 dsRNA-activated protei 98.7 6.2E-08 1.3E-12 104.0 11.4 132 46-179 267-398 (504)
75 PLN02789 farnesyltranstransfer 98.7 1.6E-07 3.5E-12 101.8 14.9 138 58-204 47-189 (320)
76 PRK11788 tetratricopeptide rep 98.7 3.4E-07 7.4E-12 98.9 17.4 116 49-170 108-228 (389)
77 PRK11447 cellulose synthase su 98.7 2.1E-07 4.5E-12 116.0 17.5 135 51-194 354-532 (1157)
78 COG5010 TadD Flp pilus assembl 98.7 2E-07 4.4E-12 97.2 14.2 118 50-173 102-219 (257)
79 PRK11447 cellulose synthase su 98.7 1.9E-07 4.1E-12 116.4 16.6 141 53-202 274-430 (1157)
80 KOG4555 TPR repeat-containing 98.7 5E-07 1.1E-11 86.1 14.4 110 45-162 40-153 (175)
81 KOG1173 Anaphase-promoting com 98.7 1.4E-07 2.9E-12 106.5 11.7 117 50-168 416-535 (611)
82 TIGR03302 OM_YfiO outer membra 98.7 5.1E-07 1.1E-11 91.5 15.0 125 49-174 71-221 (235)
83 PRK11788 tetratricopeptide rep 98.6 4.7E-07 1E-11 97.9 15.4 161 48-213 69-236 (389)
84 PRK10049 pgaA outer membrane p 98.6 5.9E-07 1.3E-11 107.6 16.7 114 49-169 50-163 (765)
85 PF13371 TPR_9: Tetratricopept 98.6 3E-07 6.4E-12 76.7 8.7 70 93-164 2-71 (73)
86 KOG2076 RNA polymerase III tra 98.6 1.4E-06 3E-11 102.6 17.0 125 47-177 138-262 (895)
87 PRK15179 Vi polysaccharide bio 98.6 1.1E-06 2.4E-11 104.1 16.1 116 47-168 119-235 (694)
88 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 8.5E-07 1.8E-11 99.1 14.2 68 48-118 75-142 (453)
89 COG3063 PilF Tfp pilus assembl 98.5 7.7E-07 1.7E-11 91.7 12.7 121 49-175 70-192 (250)
90 KOG1308 Hsp70-interacting prot 98.5 1.7E-07 3.7E-12 100.8 8.3 119 41-166 107-225 (377)
91 KOG0550 Molecular chaperone (D 98.5 4E-07 8.6E-12 99.9 10.8 136 46-183 201-348 (486)
92 PF13512 TPR_18: Tetratricopep 98.5 1.6E-06 3.5E-11 83.7 13.4 111 48-161 10-138 (142)
93 PF13432 TPR_16: Tetratricopep 98.5 3.3E-07 7.2E-12 75.1 7.2 64 53-122 2-65 (65)
94 PRK10866 outer membrane biogen 98.5 2.8E-06 6.2E-11 88.7 16.0 123 48-173 32-178 (243)
95 PRK10049 pgaA outer membrane p 98.5 1.9E-06 4.1E-11 103.2 15.7 107 50-162 361-467 (765)
96 PF13429 TPR_15: Tetratricopep 98.5 5.9E-07 1.3E-11 94.0 9.6 148 53-209 115-266 (280)
97 KOG2002 TPR-containing nuclear 98.5 1.1E-06 2.4E-11 104.1 12.4 151 47-205 163-390 (1018)
98 PF13525 YfiO: Outer membrane 98.5 4.3E-06 9.2E-11 84.6 15.2 122 48-172 5-143 (203)
99 PLN03088 SGT1, suppressor of 98.4 1.7E-06 3.8E-11 94.9 13.2 107 89-200 5-113 (356)
100 KOG1310 WD40 repeat protein [G 98.4 7.2E-07 1.6E-11 100.0 10.1 125 41-169 367-492 (758)
101 cd06406 PB1_P67 A PB1 domain i 98.4 8.3E-07 1.8E-11 77.6 8.4 75 261-338 3-79 (80)
102 COG4235 Cytochrome c biogenesi 98.4 4E-06 8.7E-11 89.2 15.0 117 48-168 156-273 (287)
103 PF14559 TPR_19: Tetratricopep 98.4 7.5E-07 1.6E-11 73.3 7.2 63 102-164 5-67 (68)
104 KOG0553 TPR repeat-containing 98.4 1.1E-06 2.5E-11 93.3 10.2 103 86-193 81-185 (304)
105 PF13371 TPR_9: Tetratricopept 98.4 1.9E-06 4.1E-11 71.9 9.3 70 55-130 2-71 (73)
106 cd00189 TPR Tetratricopeptide 98.4 3.5E-06 7.6E-11 68.4 10.5 83 88-172 2-84 (100)
107 COG1729 Uncharacterized protei 98.4 1E-05 2.3E-10 85.2 16.4 113 50-165 143-258 (262)
108 CHL00033 ycf3 photosystem I as 98.4 3E-06 6.5E-11 82.4 11.0 112 55-170 6-120 (168)
109 PRK14574 hmsH outer membrane p 98.3 6.7E-06 1.5E-10 99.2 15.8 118 48-171 34-151 (822)
110 KOG0546 HSP90 co-chaperone CPR 98.3 1.2E-06 2.6E-11 94.8 8.1 125 45-171 219-358 (372)
111 COG4785 NlpI Lipoprotein NlpI, 98.3 1.4E-06 3.1E-11 89.1 7.9 114 46-165 63-176 (297)
112 PF14559 TPR_19: Tetratricopep 98.3 1.6E-06 3.4E-11 71.4 6.8 67 58-130 1-67 (68)
113 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.9E-06 4.2E-11 96.3 9.6 68 78-151 71-141 (453)
114 cd06410 PB1_UP2 Uncharacterize 98.3 3.1E-06 6.7E-11 76.9 9.0 75 262-336 14-96 (97)
115 KOG4162 Predicted calmodulin-b 98.3 4.2E-06 9E-11 97.5 12.1 130 49-184 651-784 (799)
116 PF09976 TPR_21: Tetratricopep 98.3 8.4E-06 1.8E-10 77.7 11.9 122 46-171 9-133 (145)
117 PF12688 TPR_5: Tetratrico pep 98.3 2E-05 4.3E-10 74.2 13.5 99 49-150 2-103 (120)
118 PF13424 TPR_12: Tetratricopep 98.2 2.2E-06 4.7E-11 72.7 6.4 66 84-151 3-75 (78)
119 KOG2003 TPR repeat-containing 98.2 2.4E-06 5.1E-11 94.4 8.3 122 48-175 490-611 (840)
120 PRK02603 photosystem I assembl 98.2 1.5E-05 3.2E-10 78.1 13.0 85 85-171 34-121 (172)
121 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.5E-05 3.2E-10 71.1 11.5 85 87-173 3-93 (119)
122 COG4783 Putative Zn-dependent 98.2 2.1E-05 4.5E-10 88.2 15.1 124 48-177 306-429 (484)
123 PRK15363 pathogenicity island 98.2 8.9E-06 1.9E-10 79.8 10.7 86 87-174 36-121 (157)
124 KOG2002 TPR-containing nuclear 98.2 1.4E-05 3E-10 95.1 13.8 446 50-562 272-767 (1018)
125 KOG1125 TPR repeat-containing 98.2 1.1E-05 2.4E-10 91.7 12.2 148 53-209 290-516 (579)
126 PF13424 TPR_12: Tetratricopep 98.2 8.7E-06 1.9E-10 69.0 8.9 70 46-117 3-75 (78)
127 PRK10153 DNA-binding transcrip 98.2 2.8E-05 6E-10 89.7 15.4 137 48-192 339-488 (517)
128 cd05804 StaR_like StaR_like; a 98.2 2.1E-05 4.6E-10 84.1 13.6 98 50-153 116-217 (355)
129 COG5010 TadD Flp pilus assembl 98.2 2.3E-05 4.9E-10 82.1 12.7 146 52-206 70-217 (257)
130 PF06552 TOM20_plant: Plant sp 98.1 1.1E-05 2.4E-10 80.6 9.8 101 64-168 7-126 (186)
131 PRK11906 transcriptional regul 98.1 3.2E-05 7E-10 86.8 14.4 130 51-184 258-402 (458)
132 cd06395 PB1_Map2k5 PB1 domain 98.1 4.1E-06 8.8E-11 72.8 5.7 64 262-325 4-68 (91)
133 cd05804 StaR_like StaR_like; a 98.1 4.1E-05 8.8E-10 81.9 14.8 119 50-175 45-167 (355)
134 KOG2076 RNA polymerase III tra 98.1 1.4E-05 3E-10 94.5 11.5 112 55-171 386-498 (895)
135 COG4783 Putative Zn-dependent 98.1 4.3E-05 9.3E-10 85.7 14.4 113 52-170 344-456 (484)
136 KOG1173 Anaphase-promoting com 98.1 2.2E-05 4.8E-10 89.1 12.2 139 54-201 386-533 (611)
137 KOG1840 Kinesin light chain [C 98.1 4.6E-05 9.9E-10 87.4 14.9 167 46-214 281-473 (508)
138 PRK14574 hmsH outer membrane p 98.0 7.7E-05 1.7E-09 90.3 15.2 100 53-158 73-172 (822)
139 KOG1840 Kinesin light chain [C 98.0 5.3E-05 1.2E-09 86.9 13.0 130 46-177 239-388 (508)
140 PF09976 TPR_21: Tetratricopep 98.0 0.00027 5.9E-09 67.4 15.3 98 48-149 48-145 (145)
141 TIGR00540 hemY_coli hemY prote 98.0 0.00024 5.1E-09 79.2 17.0 121 46-172 82-203 (409)
142 KOG4162 Predicted calmodulin-b 98.0 0.00012 2.6E-09 85.6 15.0 107 45-157 681-789 (799)
143 TIGR00540 hemY_coli hemY prote 97.9 0.00012 2.7E-09 81.4 13.8 124 47-175 262-389 (409)
144 COG2956 Predicted N-acetylgluc 97.8 0.00022 4.7E-09 77.0 13.4 121 52-174 145-267 (389)
145 PRK14720 transcript cleavage f 97.8 0.00019 4.1E-09 86.9 14.5 113 49-169 32-163 (906)
146 cd06399 PB1_P40 The PB1 domain 97.8 6.1E-05 1.3E-09 66.6 7.5 56 270-326 14-73 (92)
147 PRK10747 putative protoheme IX 97.8 0.00054 1.2E-08 76.2 16.8 119 46-171 82-202 (398)
148 KOG2003 TPR repeat-containing 97.8 5.8E-05 1.3E-09 83.8 8.9 115 88-207 492-608 (840)
149 KOG1129 TPR repeat-containing 97.8 4.3E-05 9.3E-10 82.3 7.6 118 51-170 293-443 (478)
150 KOG1156 N-terminal acetyltrans 97.8 0.00014 2.9E-09 84.0 12.0 142 50-200 9-152 (700)
151 KOG0543 FKBP-type peptidyl-pro 97.8 0.00017 3.8E-09 79.6 11.9 100 46-151 255-355 (397)
152 KOG3060 Uncharacterized conser 97.8 0.00048 1E-08 72.3 14.4 115 51-171 89-203 (289)
153 KOG1128 Uncharacterized conser 97.8 7.2E-05 1.6E-09 87.1 9.2 112 55-172 492-603 (777)
154 PF12968 DUF3856: Domain of Un 97.7 0.001 2.2E-08 62.9 13.5 99 51-151 12-129 (144)
155 PRK10153 DNA-binding transcrip 97.7 0.00039 8.5E-09 80.3 13.3 88 64-158 400-489 (517)
156 PF12895 Apc3: Anaphase-promot 97.7 4.5E-05 9.9E-10 65.9 4.3 72 101-173 2-75 (84)
157 PRK10747 putative protoheme IX 97.7 0.00093 2E-08 74.3 15.5 118 49-176 264-381 (398)
158 PRK11906 transcriptional regul 97.7 0.00026 5.7E-09 79.7 11.0 91 62-158 318-408 (458)
159 KOG1174 Anaphase-promoting com 97.6 0.0002 4.2E-09 79.3 9.5 125 45-172 229-384 (564)
160 PF15015 NYD-SP12_N: Spermatog 97.6 0.00041 8.8E-09 76.9 11.3 103 46-150 174-290 (569)
161 KOG3060 Uncharacterized conser 97.6 0.0012 2.5E-08 69.5 13.8 112 53-170 125-239 (289)
162 PF12569 NARP1: NMDA receptor- 97.6 0.001 2.2E-08 76.9 14.8 81 88-170 196-276 (517)
163 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00055 1.2E-08 76.6 12.1 108 60-176 181-288 (395)
164 COG2956 Predicted N-acetylgluc 97.6 0.0014 3.1E-08 70.9 14.3 108 45-158 177-285 (389)
165 KOG1128 Uncharacterized conser 97.5 0.00054 1.2E-08 80.1 11.9 127 45-177 421-574 (777)
166 PF00515 TPR_1: Tetratricopept 97.5 0.00013 2.7E-09 52.6 4.3 32 123-154 2-33 (34)
167 PF14938 SNAP: Soluble NSF att 97.5 0.00065 1.4E-08 72.1 11.2 124 45-170 111-246 (282)
168 PF12688 TPR_5: Tetratrico pep 97.5 0.00071 1.5E-08 63.8 10.2 89 87-177 2-96 (120)
169 COG4235 Cytochrome c biogenesi 97.5 0.0026 5.6E-08 68.2 15.5 107 64-176 138-247 (287)
170 PF13428 TPR_14: Tetratricopep 97.5 0.00022 4.8E-09 54.9 5.2 42 123-164 2-43 (44)
171 KOG1174 Anaphase-promoting com 97.4 0.0007 1.5E-08 75.1 10.5 131 48-184 300-434 (564)
172 PF04733 Coatomer_E: Coatomer 97.4 0.00046 1E-08 74.1 9.1 115 54-174 137-253 (290)
173 PF03704 BTAD: Bacterial trans 97.4 0.004 8.7E-08 59.0 14.6 101 48-150 6-124 (146)
174 KOG1129 TPR repeat-containing 97.4 0.0004 8.6E-09 75.1 8.4 97 53-156 228-324 (478)
175 PRK14720 transcript cleavage f 97.4 0.0013 2.8E-08 79.9 13.6 113 49-168 117-269 (906)
176 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0024 5.2E-08 71.6 13.7 99 51-155 203-301 (395)
177 PF07719 TPR_2: Tetratricopept 97.4 0.00039 8.4E-09 49.5 5.0 33 123-155 2-34 (34)
178 KOG0695 Serine/threonine prote 97.4 0.00063 1.4E-08 73.8 8.6 84 260-343 15-102 (593)
179 PF00515 TPR_1: Tetratricopept 97.3 0.00031 6.8E-09 50.5 4.4 33 87-121 2-34 (34)
180 PF13431 TPR_17: Tetratricopep 97.3 0.00025 5.4E-09 52.2 3.7 32 111-142 2-33 (34)
181 PF13525 YfiO: Outer membrane 97.3 0.0068 1.5E-07 61.4 15.4 121 49-170 43-192 (203)
182 PRK10803 tol-pal system protei 97.3 0.0018 3.9E-08 68.7 11.1 84 87-172 143-233 (263)
183 KOG1127 TPR repeat-containing 97.3 0.00068 1.5E-08 81.3 8.5 129 47-177 491-651 (1238)
184 PF04733 Coatomer_E: Coatomer 97.3 0.0013 2.7E-08 70.8 9.9 94 62-161 181-275 (290)
185 PRK10866 outer membrane biogen 97.2 0.011 2.4E-07 61.9 16.3 117 50-167 71-220 (243)
186 KOG4648 Uncharacterized conser 97.2 0.00048 1E-08 74.8 6.1 93 90-184 101-195 (536)
187 KOG3785 Uncharacterized conser 97.2 0.0032 7E-08 68.8 12.3 111 54-170 63-199 (557)
188 COG4105 ComL DNA uptake lipopr 97.2 0.0066 1.4E-07 64.0 14.0 120 48-170 34-167 (254)
189 KOG4642 Chaperone-dependent E3 97.2 0.00098 2.1E-08 69.6 7.2 74 102-175 24-97 (284)
190 KOG1156 N-terminal acetyltrans 97.1 0.0026 5.7E-08 73.7 11.3 123 48-176 41-163 (700)
191 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.002 4.2E-08 52.5 7.4 50 123-172 2-51 (53)
192 KOG1130 Predicted G-alpha GTPa 97.1 0.0017 3.8E-08 71.9 9.0 123 50-174 237-373 (639)
193 KOG0495 HAT repeat protein [RN 97.1 0.0044 9.5E-08 72.0 12.4 105 59-170 629-733 (913)
194 COG0457 NrfG FOG: TPR repeat [ 97.1 0.02 4.4E-07 52.2 14.7 117 48-170 95-216 (291)
195 KOG4234 TPR repeat-containing 97.1 0.0026 5.7E-08 65.1 9.1 73 46-124 132-204 (271)
196 KOG0495 HAT repeat protein [RN 97.1 0.0055 1.2E-07 71.2 12.7 125 54-184 657-781 (913)
197 KOG1127 TPR repeat-containing 97.1 0.0016 3.4E-08 78.3 8.5 116 49-170 563-678 (1238)
198 PF13428 TPR_14: Tetratricopep 96.9 0.002 4.3E-08 49.6 5.5 43 87-131 2-44 (44)
199 PF07719 TPR_2: Tetratricopept 96.9 0.002 4.4E-08 45.8 5.1 33 87-121 2-34 (34)
200 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0039 8.6E-08 64.5 9.0 95 81-177 60-154 (297)
201 PF14938 SNAP: Soluble NSF att 96.9 0.0037 8.1E-08 66.4 8.8 105 45-152 32-145 (282)
202 COG0457 NrfG FOG: TPR repeat [ 96.8 0.033 7.2E-07 50.8 13.3 107 57-167 139-247 (291)
203 PRK10941 hypothetical protein; 96.8 0.012 2.7E-07 62.7 11.8 81 85-167 180-260 (269)
204 KOG4555 TPR repeat-containing 96.7 0.011 2.4E-07 57.1 9.7 90 93-184 50-145 (175)
205 cd06411 PB1_p51 The PB1 domain 96.7 0.0085 1.8E-07 52.5 8.2 64 273-337 10-76 (78)
206 PRK15331 chaperone protein Sic 96.7 0.0062 1.3E-07 60.5 7.9 88 87-176 38-125 (165)
207 PF13181 TPR_8: Tetratricopept 96.6 0.0031 6.8E-08 45.1 4.2 32 123-154 2-33 (34)
208 KOG1130 Predicted G-alpha GTPa 96.6 0.0041 8.8E-08 69.1 6.4 102 48-151 17-124 (639)
209 COG4700 Uncharacterized protei 96.5 0.025 5.3E-07 57.7 11.4 102 49-156 90-194 (251)
210 PF13431 TPR_17: Tetratricopep 96.5 0.0027 5.9E-08 46.7 3.5 34 70-109 1-34 (34)
211 KOG2376 Signal recognition par 96.5 0.024 5.3E-07 65.5 12.6 104 50-158 14-146 (652)
212 PF13512 TPR_18: Tetratricopep 96.3 0.022 4.8E-07 55.4 9.1 69 87-157 11-82 (142)
213 KOG4507 Uncharacterized conser 96.2 0.0088 1.9E-07 68.8 6.7 107 55-166 614-720 (886)
214 PF12569 NARP1: NMDA receptor- 96.2 0.042 9.1E-07 63.8 12.3 97 50-152 196-292 (517)
215 KOG2376 Signal recognition par 96.1 0.057 1.2E-06 62.6 12.8 33 50-82 112-144 (652)
216 cd06405 PB1_Mekk2_3 The PB1 do 96.1 0.04 8.6E-07 47.9 8.6 73 262-337 2-77 (79)
217 KOG0551 Hsp90 co-chaperone CNS 96.0 0.032 6.9E-07 60.9 9.5 108 61-171 55-168 (390)
218 PF13181 TPR_8: Tetratricopept 96.0 0.012 2.6E-07 42.0 4.2 33 87-121 2-34 (34)
219 PF10300 DUF3808: Protein of u 96.0 0.035 7.5E-07 63.7 10.3 99 50-151 269-376 (468)
220 KOG3364 Membrane protein invol 95.8 0.053 1.2E-06 52.5 9.1 85 87-171 33-120 (149)
221 COG3071 HemY Uncharacterized e 95.8 0.24 5.2E-06 55.2 15.4 121 45-171 81-202 (400)
222 KOG3785 Uncharacterized conser 95.8 0.046 1E-06 60.1 9.6 105 57-170 31-135 (557)
223 PF13174 TPR_6: Tetratricopept 95.8 0.015 3.3E-07 40.8 4.1 33 123-155 1-33 (33)
224 KOG3081 Vesicle coat complex C 95.7 0.12 2.7E-06 55.0 12.3 85 88-172 171-257 (299)
225 KOG2796 Uncharacterized conser 95.7 0.092 2E-06 56.0 11.2 115 52-171 181-301 (366)
226 COG1729 Uncharacterized protei 95.7 0.064 1.4E-06 57.1 10.0 85 89-175 144-234 (262)
227 smart00028 TPR Tetratricopepti 95.6 0.017 3.7E-07 38.0 3.7 31 124-154 3-33 (34)
228 PF09986 DUF2225: Uncharacteri 95.5 0.24 5.1E-06 51.3 13.4 98 55-154 84-197 (214)
229 COG3118 Thioredoxin domain-con 95.5 0.39 8.4E-06 52.0 15.0 115 50-170 136-286 (304)
230 KOG4814 Uncharacterized conser 95.4 0.094 2E-06 61.3 10.8 100 50-151 356-457 (872)
231 PRK04841 transcriptional regul 95.4 0.18 3.8E-06 61.4 13.9 100 50-151 454-560 (903)
232 KOG3824 Huntingtin interacting 95.3 0.049 1.1E-06 59.0 7.7 79 87-167 117-195 (472)
233 PRK04841 transcriptional regul 95.3 0.26 5.7E-06 59.9 15.1 104 48-153 491-604 (903)
234 KOG4340 Uncharacterized conser 95.3 0.059 1.3E-06 58.2 8.2 99 48-155 144-271 (459)
235 KOG1941 Acetylcholine receptor 95.3 0.05 1.1E-06 60.1 7.6 129 51-181 125-271 (518)
236 KOG0376 Serine-threonine phosp 95.1 0.015 3.2E-07 65.9 3.3 101 90-195 8-110 (476)
237 PLN03077 Protein ECB2; Provisi 95.1 0.27 5.9E-06 60.0 14.3 146 50-207 556-707 (857)
238 KOG3824 Huntingtin interacting 95.1 0.072 1.6E-06 57.7 8.0 82 45-132 113-194 (472)
239 KOG3606 Cell polarity protein 95.0 0.026 5.6E-07 59.7 4.5 79 259-339 17-98 (358)
240 COG4700 Uncharacterized protei 95.0 0.29 6.2E-06 50.1 11.5 115 54-175 62-179 (251)
241 KOG2471 TPR repeat-containing 94.9 0.069 1.5E-06 60.8 7.7 119 49-169 241-382 (696)
242 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.096 2.1E-06 42.7 6.4 42 88-131 3-44 (53)
243 PLN03081 pentatricopeptide (PP 94.8 0.21 4.7E-06 59.5 12.1 114 51-170 429-542 (697)
244 COG2976 Uncharacterized protei 94.8 0.4 8.7E-06 49.2 12.0 100 50-154 91-191 (207)
245 PF04184 ST7: ST7 protein; In 94.7 0.17 3.8E-06 57.9 10.3 113 53-173 173-312 (539)
246 smart00028 TPR Tetratricopepti 94.7 0.047 1E-06 35.8 3.7 32 87-120 2-33 (34)
247 KOG1308 Hsp70-interacting prot 94.6 0.016 3.4E-07 63.4 1.6 71 101-171 127-197 (377)
248 KOG2796 Uncharacterized conser 94.6 0.42 9.2E-06 51.2 12.0 106 49-158 213-322 (366)
249 KOG4340 Uncharacterized conser 94.4 0.34 7.4E-06 52.6 10.9 104 57-170 19-122 (459)
250 COG4105 ComL DNA uptake lipopr 94.3 0.19 4.2E-06 53.2 8.9 71 86-158 34-107 (254)
251 KOG3081 Vesicle coat complex C 94.3 0.63 1.4E-05 49.9 12.5 92 61-158 186-278 (299)
252 KOG0545 Aryl-hydrocarbon recep 94.3 0.33 7.3E-06 51.4 10.3 82 86-169 178-277 (329)
253 PF13176 TPR_7: Tetratricopept 94.2 0.075 1.6E-06 39.2 4.1 28 124-151 1-28 (36)
254 PRK10941 hypothetical protein; 94.1 0.49 1.1E-05 50.7 11.7 77 50-132 183-259 (269)
255 PF04781 DUF627: Protein of un 94.1 0.32 7E-06 45.6 8.9 97 54-151 2-107 (111)
256 KOG1586 Protein required for f 94.0 0.88 1.9E-05 48.1 12.8 121 51-173 116-248 (288)
257 COG4976 Predicted methyltransf 94.0 0.082 1.8E-06 55.4 5.2 61 97-157 4-64 (287)
258 PF14561 TPR_20: Tetratricopep 93.7 0.35 7.5E-06 43.4 8.2 65 107-171 7-73 (90)
259 PLN03081 pentatricopeptide (PP 93.7 0.9 2E-05 54.3 14.1 88 52-149 364-453 (697)
260 PLN03218 maturation of RBCL 1; 93.7 1.4 3.1E-05 55.5 16.3 113 49-169 508-627 (1060)
261 PF03704 BTAD: Bacterial trans 93.5 0.57 1.2E-05 44.3 9.7 65 46-116 60-124 (146)
262 KOG1586 Protein required for f 93.4 0.67 1.4E-05 48.9 10.6 98 58-156 83-188 (288)
263 PF05843 Suf: Suppressor of fo 93.2 1 2.2E-05 48.2 12.2 100 52-156 5-104 (280)
264 COG2912 Uncharacterized conser 93.2 0.49 1.1E-05 50.7 9.6 79 85-165 180-258 (269)
265 COG3071 HemY Uncharacterized e 93.1 1.4 3.1E-05 49.3 13.2 111 54-174 269-379 (400)
266 PF13176 TPR_7: Tetratricopept 93.0 0.17 3.7E-06 37.3 4.2 25 89-115 2-26 (36)
267 PLN03218 maturation of RBCL 1; 92.9 2.2 4.7E-05 54.0 16.1 115 48-170 542-663 (1060)
268 PF10579 Rapsyn_N: Rapsyn N-te 92.8 0.74 1.6E-05 40.8 8.5 69 46-117 4-72 (80)
269 PLN03077 Protein ECB2; Provisi 92.8 1.5 3.4E-05 53.5 14.5 110 55-170 596-705 (857)
270 PF13174 TPR_6: Tetratricopept 92.7 0.19 4.1E-06 35.1 4.0 31 88-120 2-32 (33)
271 KOG2610 Uncharacterized conser 92.4 1.7 3.7E-05 48.1 12.4 116 51-172 106-225 (491)
272 PF10602 RPN7: 26S proteasome 92.3 1.8 3.8E-05 43.5 11.8 101 47-150 35-141 (177)
273 KOG2053 Mitochondrial inherita 91.9 1.6 3.4E-05 53.2 12.5 99 56-162 17-116 (932)
274 KOG1941 Acetylcholine receptor 91.6 0.75 1.6E-05 51.2 8.7 99 51-151 165-275 (518)
275 KOG2396 HAT (Half-A-TPR) repea 91.4 1.9 4.2E-05 49.7 12.0 97 65-167 88-185 (568)
276 PF02259 FAT: FAT domain; Int 91.1 5.1 0.00011 42.7 14.6 122 46-169 144-305 (352)
277 PF02259 FAT: FAT domain; Int 91.0 3.1 6.7E-05 44.5 12.7 106 49-154 185-341 (352)
278 KOG1915 Cell cycle control pro 90.9 2.7 5.8E-05 48.4 12.3 99 53-157 78-176 (677)
279 PF14561 TPR_20: Tetratricopep 90.2 2.2 4.7E-05 38.3 9.0 66 67-138 7-74 (90)
280 PF10300 DUF3808: Protein of u 90.0 2.3 5E-05 48.9 11.3 104 61-170 246-354 (468)
281 KOG1915 Cell cycle control pro 89.9 5.8 0.00013 45.8 13.8 109 60-173 378-488 (677)
282 PF12968 DUF3856: Domain of Un 89.8 1.3 2.8E-05 42.4 7.4 67 85-151 6-84 (144)
283 PF08631 SPO22: Meiosis protei 89.7 12 0.00027 39.8 15.8 112 37-153 26-152 (278)
284 PF09613 HrpB1_HrpK: Bacterial 89.6 19 0.00042 36.0 15.8 114 48-169 10-123 (160)
285 KOG1585 Protein required for f 89.3 8.1 0.00018 41.4 13.5 107 47-155 30-143 (308)
286 PF12862 Apc5: Anaphase-promot 89.3 1.6 3.4E-05 39.0 7.4 58 58-117 8-70 (94)
287 PF13374 TPR_10: Tetratricopep 89.0 0.85 1.8E-05 33.3 4.7 29 87-117 3-31 (42)
288 COG3914 Spy Predicted O-linked 88.6 5.7 0.00012 46.8 12.9 109 54-167 73-187 (620)
289 KOG0530 Protein farnesyltransf 88.2 5.5 0.00012 43.0 11.5 107 60-171 55-162 (318)
290 PF13374 TPR_10: Tetratricopep 88.0 1.1 2.3E-05 32.7 4.6 30 122-151 2-31 (42)
291 KOG2610 Uncharacterized conser 87.4 3 6.6E-05 46.2 9.3 95 50-147 139-234 (491)
292 PF07079 DUF1347: Protein of u 87.3 15 0.00032 42.4 14.9 119 46-169 377-543 (549)
293 PF05843 Suf: Suppressor of fo 87.1 6.2 0.00014 42.2 11.6 107 51-163 38-148 (280)
294 PRK13184 pknD serine/threonine 86.6 4.5 9.6E-05 50.5 11.3 118 51-170 478-600 (932)
295 PF10373 EST1_DNA_bind: Est1 D 86.4 2.3 5E-05 44.1 7.7 62 107-168 1-62 (278)
296 KOG2053 Mitochondrial inherita 85.9 9.1 0.0002 47.0 13.0 109 51-166 46-154 (932)
297 COG0790 FOG: TPR repeat, SEL1 85.8 20 0.00044 37.7 14.5 107 50-163 111-230 (292)
298 PF14560 Ubiquitin_2: Ubiquiti 85.7 3 6.4E-05 36.8 6.9 66 274-341 18-85 (87)
299 KOG3364 Membrane protein invol 85.5 2.8 6.1E-05 40.9 7.1 74 51-128 35-111 (149)
300 KOG2471 TPR repeat-containing 85.4 1.1 2.3E-05 51.5 4.8 86 47-134 282-381 (696)
301 COG2912 Uncharacterized conser 85.2 4.8 0.0001 43.3 9.4 80 44-132 180-259 (269)
302 KOG1550 Extracellular protein 84.7 19 0.0004 42.5 14.8 107 51-167 291-407 (552)
303 KOG4507 Uncharacterized conser 84.7 2.5 5.3E-05 49.7 7.3 96 60-159 225-320 (886)
304 PF04184 ST7: ST7 protein; In 84.7 8.1 0.00018 44.8 11.3 101 44-148 215-321 (539)
305 COG4976 Predicted methyltransf 84.6 1.3 2.9E-05 46.6 4.7 61 56-122 3-63 (287)
306 PF12862 Apc5: Anaphase-promot 84.5 3.9 8.5E-05 36.5 7.2 52 102-153 12-72 (94)
307 PF13281 DUF4071: Domain of un 83.9 18 0.00039 40.8 13.5 67 52-121 183-259 (374)
308 KOG0529 Protein geranylgeranyl 83.7 9.3 0.0002 43.3 11.1 104 62-169 89-196 (421)
309 PF10516 SHNi-TPR: SHNi-TPR; 83.3 1.6 3.5E-05 33.3 3.5 29 123-151 2-30 (38)
310 COG3898 Uncharacterized membra 83.1 14 0.0003 42.0 11.9 97 58-157 198-298 (531)
311 PF08424 NRDE-2: NRDE-2, neces 80.5 22 0.00047 38.9 12.5 94 68-165 5-108 (321)
312 PF09613 HrpB1_HrpK: Bacterial 80.2 26 0.00057 35.1 11.7 85 86-172 10-94 (160)
313 PF09670 Cas_Cas02710: CRISPR- 78.3 29 0.00062 39.1 12.8 69 46-116 129-197 (379)
314 PF10373 EST1_DNA_bind: Est1 D 78.1 8.7 0.00019 39.8 8.2 62 67-134 1-62 (278)
315 KOG1550 Extracellular protein 78.0 16 0.00035 42.9 11.3 108 51-168 247-372 (552)
316 PF07720 TPR_3: Tetratricopept 77.9 5.9 0.00013 29.8 4.9 33 123-155 2-36 (36)
317 PF08631 SPO22: Meiosis protei 77.9 23 0.0005 37.7 11.5 100 58-159 3-124 (278)
318 KOG1585 Protein required for f 76.1 20 0.00044 38.5 10.0 100 46-147 69-175 (308)
319 COG5191 Uncharacterized conser 75.6 5.7 0.00012 43.7 6.0 91 70-166 95-186 (435)
320 PF09986 DUF2225: Uncharacteri 75.4 16 0.00036 37.8 9.2 85 46-132 123-210 (214)
321 TIGR02561 HrpB1_HrpK type III 75.1 40 0.00087 33.5 11.2 86 48-139 10-95 (153)
322 KOG0686 COP9 signalosome, subu 74.8 15 0.00033 41.7 9.2 98 49-149 151-256 (466)
323 COG3898 Uncharacterized membra 74.7 77 0.0017 36.3 14.5 94 51-150 123-216 (531)
324 cd01789 Alp11_N Ubiquitin-like 74.7 15 0.00032 32.4 7.5 70 270-341 11-83 (84)
325 PF04212 MIT: MIT (microtubule 73.9 7.9 0.00017 32.6 5.3 34 45-78 2-35 (69)
326 PF04910 Tcf25: Transcriptiona 73.1 31 0.00067 38.6 11.2 81 75-161 33-143 (360)
327 COG3914 Spy Predicted O-linked 72.6 27 0.00059 41.4 10.8 100 63-167 46-147 (620)
328 PF10255 Paf67: RNA polymerase 72.0 6.1 0.00013 44.9 5.5 59 89-150 125-192 (404)
329 PF07721 TPR_4: Tetratricopept 72.0 4.5 9.8E-05 27.7 2.8 24 123-146 2-25 (26)
330 COG3118 Thioredoxin domain-con 71.8 21 0.00046 39.0 9.2 54 92-147 140-193 (304)
331 COG3629 DnrI DNA-binding trans 71.3 22 0.00047 38.7 9.2 64 86-151 153-216 (280)
332 TIGR03504 FimV_Cterm FimV C-te 70.7 14 0.0003 29.2 5.6 25 126-150 3-27 (44)
333 KOG2300 Uncharacterized conser 70.4 68 0.0015 37.5 13.1 98 48-152 367-475 (629)
334 PF07315 DUF1462: Protein of u 69.8 5 0.00011 36.4 3.3 58 265-326 1-62 (93)
335 cd02678 MIT_VPS4 MIT: domain c 68.7 11 0.00023 32.5 5.1 35 44-78 2-36 (75)
336 KOG1070 rRNA processing protei 68.5 58 0.0013 42.3 13.0 102 62-170 1511-1614(1710)
337 PF10516 SHNi-TPR: SHNi-TPR; 68.2 7.6 0.00017 29.7 3.6 30 87-118 2-31 (38)
338 cd02682 MIT_AAA_Arch MIT: doma 68.0 12 0.00025 33.0 5.1 34 45-78 3-36 (75)
339 KOG0530 Protein farnesyltransf 67.9 29 0.00064 37.6 9.0 132 63-203 93-233 (318)
340 TIGR02710 CRISPR-associated pr 67.6 1.1E+02 0.0024 34.7 14.0 65 48-112 130-195 (380)
341 PF11207 DUF2989: Protein of u 66.6 33 0.00071 35.6 8.9 54 86-142 141-198 (203)
342 KOG3617 WD40 and TPR repeat-co 66.5 31 0.00068 42.5 9.8 100 50-151 860-996 (1416)
343 KOG4814 Uncharacterized conser 66.2 37 0.00081 40.7 10.1 74 87-162 355-434 (872)
344 cd02681 MIT_calpain7_1 MIT: do 66.1 13 0.00028 32.6 5.1 34 45-78 3-36 (76)
345 KOG1310 WD40 repeat protein [G 65.2 16 0.00036 42.7 7.0 74 102-175 388-464 (758)
346 PF14863 Alkyl_sulf_dimr: Alky 65.2 30 0.00065 33.8 8.0 53 121-173 69-121 (141)
347 KOG1070 rRNA processing protei 63.8 85 0.0018 41.0 13.1 101 48-154 1458-1562(1710)
348 PF08424 NRDE-2: NRDE-2, neces 63.4 83 0.0018 34.4 12.0 82 64-151 47-131 (321)
349 PF06957 COPI_C: Coatomer (COP 62.8 87 0.0019 36.0 12.2 114 46-159 202-337 (422)
350 PF04910 Tcf25: Transcriptiona 62.1 62 0.0013 36.2 10.8 101 49-154 104-225 (360)
351 PRK15180 Vi polysaccharide bio 62.1 64 0.0014 37.7 10.8 100 52-157 293-392 (831)
352 COG4941 Predicted RNA polymera 62.0 51 0.0011 37.0 9.7 117 43-166 270-409 (415)
353 PF10345 Cohesin_load: Cohesin 61.4 2.3E+02 0.0049 33.8 16.0 121 46-169 57-188 (608)
354 smart00745 MIT Microtubule Int 61.1 19 0.00041 30.7 5.2 35 44-78 4-38 (77)
355 PHA02537 M terminase endonucle 61.0 38 0.00083 35.8 8.4 110 58-170 93-225 (230)
356 cd02656 MIT MIT: domain contai 60.7 19 0.00042 30.7 5.2 35 44-78 2-36 (75)
357 KOG2047 mRNA splicing factor [ 59.8 1.6E+02 0.0035 35.7 13.8 63 52-116 391-453 (835)
358 COG4649 Uncharacterized protei 59.7 2.1E+02 0.0046 29.6 12.9 99 50-150 96-195 (221)
359 PF02309 AUX_IAA: AUX/IAA fami 59.1 3.1 6.7E-05 43.0 0.0 58 259-316 108-188 (215)
360 COG2976 Uncharacterized protei 59.0 1.5E+02 0.0032 31.0 11.8 108 64-175 50-178 (207)
361 KOG0529 Protein geranylgeranyl 57.9 2E+02 0.0044 33.0 13.7 123 46-172 26-161 (421)
362 TIGR02561 HrpB1_HrpK type III 57.8 1E+02 0.0022 30.7 10.2 71 102-172 24-94 (153)
363 COG3014 Uncharacterized protei 57.0 1.1E+02 0.0024 34.5 11.2 116 52-170 62-241 (449)
364 PF10602 RPN7: 26S proteasome 56.8 56 0.0012 32.8 8.5 66 84-151 34-102 (177)
365 cd02683 MIT_1 MIT: domain cont 56.8 22 0.00047 31.2 4.8 33 46-78 4-36 (77)
366 PF07720 TPR_3: Tetratricopept 56.2 31 0.00067 25.9 4.9 32 50-81 3-36 (36)
367 COG3947 Response regulator con 56.0 23 0.00049 39.0 5.8 53 121-173 278-330 (361)
368 PF02017 CIDE-N: CIDE-N domain 55.9 24 0.00052 31.3 5.0 55 260-319 2-57 (78)
369 KOG1839 Uncharacterized protei 55.4 36 0.00078 43.6 8.1 124 46-172 930-1073(1236)
370 PF15015 NYD-SP12_N: Spermatog 55.3 40 0.00088 38.7 7.7 81 89-172 180-278 (569)
371 cd02680 MIT_calpain7_2 MIT: do 55.1 21 0.00045 31.4 4.4 35 45-79 3-37 (75)
372 PF00725 3HCDH: 3-hydroxyacyl- 55.1 18 0.0004 32.0 4.3 61 638-711 11-82 (97)
373 PF08626 TRAPPC9-Trs120: Trans 54.9 1.3E+02 0.0028 39.0 13.3 126 45-170 239-459 (1185)
374 COG3947 Response regulator con 54.5 38 0.00082 37.3 7.1 57 90-148 283-339 (361)
375 COG4837 Uncharacterized protei 53.7 24 0.00052 32.4 4.7 70 265-338 8-81 (106)
376 cd02677 MIT_SNX15 MIT: domain 53.5 25 0.00054 30.7 4.7 35 44-78 2-36 (75)
377 PF11817 Foie-gras_1: Foie gra 53.4 71 0.0015 33.6 9.0 83 65-149 155-245 (247)
378 PF10579 Rapsyn_N: Rapsyn N-te 52.8 95 0.0021 27.8 8.1 60 89-150 9-71 (80)
379 KOG1839 Uncharacterized protei 52.7 56 0.0012 42.0 9.2 105 46-152 971-1087(1236)
380 cd02684 MIT_2 MIT: domain cont 52.3 29 0.00063 30.2 4.9 34 45-78 3-36 (75)
381 KOG0546 HSP90 co-chaperone CPR 52.1 12 0.00025 41.9 2.9 79 53-137 280-358 (372)
382 PF12739 TRAPPC-Trs85: ER-Golg 51.3 4E+02 0.0086 30.3 15.1 102 50-151 210-329 (414)
383 PF10255 Paf67: RNA polymerase 51.3 55 0.0012 37.4 8.2 96 56-154 130-231 (404)
384 PF11817 Foie-gras_1: Foie gra 51.1 77 0.0017 33.3 8.8 61 53-115 183-245 (247)
385 COG0790 FOG: TPR repeat, SEL1 50.6 2.5E+02 0.0054 29.5 12.7 82 64-154 171-269 (292)
386 PF05198 IF3_N: Translation in 49.4 20 0.00044 31.4 3.5 42 301-349 15-57 (76)
387 PF14863 Alkyl_sulf_dimr: Alky 47.8 52 0.0011 32.2 6.4 47 90-138 74-120 (141)
388 KOG3616 Selective LIM binding 47.8 1.5E+02 0.0033 36.4 11.1 79 418-500 595-673 (1636)
389 cd02682 MIT_AAA_Arch MIT: doma 47.1 90 0.002 27.5 7.1 30 140-169 31-60 (75)
390 PF10345 Cohesin_load: Cohesin 46.8 3.1E+02 0.0067 32.7 14.0 97 48-146 301-428 (608)
391 COG3629 DnrI DNA-binding trans 46.8 87 0.0019 34.1 8.5 63 48-116 153-215 (280)
392 COG2909 MalT ATP-dependent tra 46.0 2E+02 0.0044 35.9 12.1 87 48-136 458-551 (894)
393 cd01812 BAG1_N Ubiquitin-like 45.0 76 0.0016 26.2 6.2 44 262-305 2-46 (71)
394 PF11846 DUF3366: Domain of un 44.3 87 0.0019 31.3 7.7 53 103-156 126-178 (193)
395 PF07079 DUF1347: Protein of u 44.2 1.1E+02 0.0024 35.7 9.0 60 48-114 462-521 (549)
396 KOG3617 WD40 and TPR repeat-co 43.5 1.5E+02 0.0034 36.9 10.4 62 87-150 859-940 (1416)
397 PF13281 DUF4071: Domain of un 43.3 1.6E+02 0.0034 33.5 10.1 82 87-170 142-231 (374)
398 KOG2300 Uncharacterized conser 43.1 1.9E+02 0.0042 34.0 10.7 105 50-156 9-123 (629)
399 KOG0292 Vesicle coat complex C 42.6 4.2E+02 0.0092 33.5 13.8 117 45-161 988-1123(1202)
400 KOG2047 mRNA splicing factor [ 41.6 5.1E+02 0.011 31.8 14.1 105 46-153 423-542 (835)
401 PF03745 DUF309: Domain of unk 41.4 1E+02 0.0023 25.9 6.4 59 52-110 3-61 (62)
402 TIGR02279 PaaC-3OHAcCoADH 3-hy 41.4 52 0.0011 38.5 6.3 63 636-711 423-496 (503)
403 PF11207 DUF2989: Protein of u 40.1 56 0.0012 34.0 5.5 54 51-107 144-197 (203)
404 PRK07819 3-hydroxybutyryl-CoA 38.8 71 0.0015 34.3 6.4 69 636-710 198-270 (286)
405 PF07721 TPR_4: Tetratricopept 37.8 39 0.00084 23.0 2.8 23 88-112 3-25 (26)
406 cd01615 CIDE_N CIDE_N domain, 37.7 97 0.0021 27.6 5.9 56 260-319 2-57 (78)
407 PF10952 DUF2753: Protein of u 37.1 1.3E+02 0.0029 29.3 7.1 69 50-120 3-86 (140)
408 TIGR03362 VI_chp_7 type VI sec 36.9 6.1E+02 0.013 27.9 16.0 95 49-147 50-157 (301)
409 PF15469 Sec5: Exocyst complex 36.4 3.2E+02 0.0069 27.1 10.3 16 102-117 100-115 (182)
410 COG2909 MalT ATP-dependent tra 36.0 8.1E+02 0.018 31.0 15.0 104 46-151 413-526 (894)
411 KOG2396 HAT (Half-A-TPR) repea 35.7 1.8E+02 0.0038 34.4 9.0 62 60-126 117-178 (568)
412 KOG2561 Adaptor protein NUB1, 34.9 2.2E+02 0.0048 33.2 9.5 110 42-151 157-296 (568)
413 PRK08269 3-hydroxybutyryl-CoA 34.7 87 0.0019 34.3 6.4 68 638-711 193-267 (314)
414 PF00788 RA: Ras association ( 34.3 3E+02 0.0065 23.6 9.0 77 262-338 4-90 (93)
415 cd06535 CIDE_N_CAD CIDE_N doma 34.2 1E+02 0.0023 27.3 5.5 50 260-311 2-52 (77)
416 PF12583 TPPII_N: Tripeptidyl 34.1 1.5E+02 0.0032 29.1 6.9 45 39-83 67-111 (139)
417 COG4455 ImpE Protein of avirul 33.5 1.5E+02 0.0033 31.7 7.4 59 57-121 10-68 (273)
418 PF07929 PRiA4_ORF3: Plasmid p 33.5 54 0.0012 32.7 4.2 35 260-294 4-42 (179)
419 KOG4459 Membrane-associated pr 33.1 1E+02 0.0022 35.8 6.6 120 50-170 33-181 (471)
420 smart00101 14_3_3 14-3-3 homol 32.4 1.4E+02 0.0031 31.8 7.3 50 65-115 145-198 (244)
421 smart00386 HAT HAT (Half-A-TPR 32.3 1.1E+02 0.0024 20.4 4.5 25 137-161 2-26 (33)
422 PF00244 14-3-3: 14-3-3 protei 31.9 1.6E+02 0.0035 31.0 7.6 51 65-116 143-197 (236)
423 KOG3807 Predicted membrane pro 31.7 6.2E+02 0.013 28.8 12.0 94 53-154 189-307 (556)
424 COG5159 RPN6 26S proteasome re 31.0 2.1E+02 0.0046 31.7 8.3 51 52-104 7-61 (421)
425 PF07904 Eaf7: Chromatin modif 30.9 75 0.0016 28.8 4.3 57 638-694 5-63 (91)
426 smart00386 HAT HAT (Half-A-TPR 30.2 1.2E+02 0.0025 20.3 4.3 24 104-127 3-26 (33)
427 KOG0985 Vesicle coat protein c 30.2 2.7E+02 0.0059 35.7 9.7 106 50-169 1196-1326(1666)
428 COG5560 UBP12 Ubiquitin C-term 29.6 70 0.0015 38.5 4.7 59 263-321 150-209 (823)
429 cd00754 MoaD Ubiquitin domain 29.1 1.5E+02 0.0032 25.0 5.6 28 268-295 14-41 (80)
430 cd02679 MIT_spastin MIT: domai 29.0 1.1E+02 0.0024 27.2 4.8 34 45-78 5-38 (79)
431 cd02683 MIT_1 MIT: domain cont 28.8 1.7E+02 0.0037 25.6 6.0 27 141-167 32-58 (77)
432 PRK15180 Vi polysaccharide bio 28.6 1.4E+02 0.0029 35.2 6.6 97 57-159 332-428 (831)
433 TIGR03504 FimV_Cterm FimV C-te 28.4 90 0.002 24.6 3.7 26 90-117 3-28 (44)
434 PF04010 DUF357: Protein of un 28.3 1.5E+02 0.0033 26.0 5.5 39 37-75 24-62 (75)
435 PF11976 Rad60-SLD: Ubiquitin- 27.4 1.7E+02 0.0037 24.2 5.7 43 263-305 3-48 (72)
436 KOG3783 Uncharacterized conser 27.1 2.2E+02 0.0047 33.9 8.0 71 52-127 271-341 (546)
437 PF02335 Cytochrom_C552: Cytoc 27.0 6.2E+02 0.014 29.4 11.6 78 484-564 301-378 (434)
438 COG5191 Uncharacterized conser 26.8 90 0.0019 34.8 4.7 66 56-127 115-181 (435)
439 PF04781 DUF627: Protein of un 26.5 3.7E+02 0.008 25.5 8.0 72 92-165 2-87 (111)
440 cd07609 BAR_SIP3_fungi The Bin 25.9 6.9E+02 0.015 26.2 10.8 105 384-503 12-124 (214)
441 PF03671 Ufm1: Ubiquitin fold 25.8 1.6E+02 0.0036 25.9 5.1 35 260-294 2-40 (76)
442 smart00266 CAD Domains present 25.2 1.9E+02 0.0041 25.5 5.5 36 281-319 20-55 (74)
443 PF08969 USP8_dimer: USP8 dime 25.1 1.5E+02 0.0033 27.4 5.3 39 40-78 30-68 (115)
444 PF09379 FERM_N: FERM N-termin 25.0 2.8E+02 0.0061 23.3 6.7 53 267-319 3-59 (80)
445 PF09205 DUF1955: Domain of un 25.0 4.3E+02 0.0094 26.3 8.4 35 117-151 115-149 (161)
446 PF00165 HTH_AraC: Bacterial r 24.7 29 0.00063 26.2 0.4 19 390-408 23-41 (42)
447 PF04212 MIT: MIT (microtubule 24.7 1.4E+02 0.0031 24.9 4.7 25 126-150 9-33 (69)
448 KOG4563 Cell cycle-regulated h 24.4 1.8E+02 0.0039 33.0 6.5 35 46-80 39-73 (400)
449 smart00745 MIT Microtubule Int 24.0 1.6E+02 0.0035 25.0 5.0 11 144-154 37-47 (77)
450 PF02064 MAS20: MAS20 protein 23.4 2.2E+02 0.0048 27.3 6.1 37 46-82 61-97 (121)
451 PF00076 RRM_1: RNA recognitio 22.9 3E+02 0.0064 21.7 6.1 53 272-326 2-59 (70)
452 PRK11125 nrfA cytochrome c nit 22.5 8.8E+02 0.019 28.6 11.8 53 509-562 364-416 (480)
453 PRK14065 exodeoxyribonuclease 22.4 1.4E+02 0.003 27.1 4.2 37 405-445 43-79 (86)
454 cd06538 CIDE_N_FSP27 CIDE_N do 22.3 2.5E+02 0.0055 25.1 5.8 55 260-319 2-56 (79)
455 COG4499 Predicted membrane pro 22.3 1.2E+03 0.027 26.8 13.5 92 53-157 253-345 (434)
456 KOG2581 26S proteasome regulat 22.2 9.4E+02 0.02 28.1 11.5 68 86-155 209-280 (493)
457 cd07680 F-BAR_PACSIN1 The F-BA 22.2 1E+03 0.022 25.7 13.7 70 387-465 19-88 (258)
458 PF07219 HemY_N: HemY protein 22.0 3.4E+02 0.0073 24.9 6.9 32 46-77 57-88 (108)
459 TIGR01659 sex-lethal sex-letha 21.9 3.9E+02 0.0085 29.8 8.7 55 271-326 196-255 (346)
460 COG4455 ImpE Protein of avirul 21.8 4.8E+02 0.01 28.1 8.6 57 102-158 15-71 (273)
461 PF01239 PPTA: Protein prenylt 21.8 2.3E+02 0.005 19.9 4.6 25 108-132 3-27 (31)
462 PF07499 RuvA_C: RuvA, C-termi 21.7 51 0.0011 26.0 1.3 33 669-708 9-41 (47)
463 KOG3783 Uncharacterized conser 21.6 5.3E+02 0.011 30.8 9.7 83 85-169 448-538 (546)
464 PF09797 NatB_MDM20: N-acetylt 21.1 4.7E+02 0.01 28.9 9.2 46 102-147 197-242 (365)
465 COG2178 Predicted RNA-binding 20.8 7.9E+02 0.017 25.8 9.8 95 472-570 33-151 (204)
466 PF08859 DGC: DGC domain; Int 20.6 32 0.0007 32.1 -0.1 47 390-439 62-108 (110)
467 cd02656 MIT MIT: domain contai 20.6 2.1E+02 0.0046 24.2 5.0 14 136-149 20-33 (75)
468 cd08306 Death_FADD Fas-associa 20.6 1.8E+02 0.0038 25.9 4.6 54 626-687 8-72 (86)
469 PF13041 PPR_2: PPR repeat fam 20.4 3.9E+02 0.0085 20.4 6.1 27 124-150 5-31 (50)
470 PRK06130 3-hydroxybutyryl-CoA 20.2 1.5E+02 0.0033 31.7 5.0 49 639-689 195-250 (311)
471 PRK05808 3-hydroxybutyryl-CoA 20.2 2.5E+02 0.0055 29.7 6.6 67 638-710 196-266 (282)
472 KOG1258 mRNA processing protei 20.2 1E+03 0.022 28.7 11.8 102 51-158 300-402 (577)
473 cd02680 MIT_calpain7_2 MIT: do 20.1 1.5E+02 0.0033 26.0 4.0 16 102-117 20-35 (75)
474 PRK11619 lytic murein transgly 20.1 7.1E+02 0.015 30.3 10.9 49 102-150 326-374 (644)
475 PF13226 DUF4034: Domain of un 20.0 9.6E+02 0.021 26.2 10.9 115 54-170 6-147 (277)
No 1
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=7.3e-99 Score=852.45 Aligned_cols=678 Identities=45% Similarity=0.631 Sum_probs=567.0
Q ss_pred CCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCh-hHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005002 1 MGKPTGKKKNIQGA----AAGDTKGKQSIKTTSDRGSSKAFDE-DTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKAL 75 (720)
Q Consensus 1 Mgkp~~kkk~~~g~----~~~~ss~~~s~ps~~~~~ss~a~d~-d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL 75 (720)
||++++++++.... .++.++.+..++-+...+.+.+.++ +..+++.++..++.+||.+|+.++|.+|...|..++
T Consensus 1 ~~d~~~k~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~ 80 (748)
T KOG4151|consen 1 MGDKTLKSKNNLDVLNDAENGAELVGEKSKKPKVLSIVKSLDDEDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAI 80 (748)
T ss_pred CCccccccCCcccccccccccccccccccccchhhhhhhcccccchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhh
Confidence 89999999998542 2222222233344445555556655 888899999999999999999999999999999999
Q ss_pred HhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 76 KLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 76 ~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
.+.|.++.+.+.+++|++.|||+++.++|..++.+|+.|+...|...++++++++||..+++++-|++++......+|.+
T Consensus 81 ~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 81 KLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred eeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccChhHHhhhcCCCCCCCCcchhh--HHHHHHHHhhhhhccchhhhh---hhhh-----hh-h
Q 005002 156 SSALEVLESVKQSMIEKGIDIDEKMKEFGLDSSGEAHGALR--FRKLVKEKVKKKKKNGKEEEK---KAED-----EV-V 224 (720)
Q Consensus 156 ~~A~~~L~~lk~~l~eka~a~~ek~~~L~~~~P~~P~~~~~--l~~i~k~k~kkkK~~k~~~k~---k~~~-----~~-~ 224 (720)
..+...+.+++..+..+..+......... -..|...++ ...+.+++-.+++........ +.++ .+ +
T Consensus 161 ~~~~eif~elk~ll~~~d~~s~~~~~~~~---~~~~vg~~~~~~~~i~l~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (748)
T KOG4151|consen 161 VSASEIFEELKGLLELKDLASDESELPLE---AVAPVGASPALIAKICLQRLYKSKKTDCVEAFLTKDGERLFKERVFED 237 (748)
T ss_pred chHHHHHHHHHHHHhhcCCccccccCChh---hhccccCchHHHHHHHHHHHhhhccchhHHhhcCCcHHhhhhhhhccC
Confidence 99999999999988777666654333322 233333333 445555544333321110000 0111 11 1
Q ss_pred -hhccc--------CcchhhhHhhhhhhhhhhhhhhh-------hcccccccceeeeeecCceEEEeccCCCCHHHHHHH
Q 005002 225 -LEENV--------SDVKDKEVVTKIVEEEKEVTDVV-------NEEEKVVTKTVKLVFGDDIRWAQLPVNCSIRLVRDI 288 (720)
Q Consensus 225 -~~~~~--------~~s~~kk~~~~~~~~q~~~~~~~-------~~~~~~~~~~~K~~~g~DiR~~~~~~~~s~~~L~~~ 288 (720)
+.... .....++.........+.++.+. ..+...+++++|+++|+|||+.++|.+|++..|+++
T Consensus 238 ~~d~~~~~~~~~~l~a~~~~~v~~~~~~~~~e~l~~~~l~~~~~~~e~~~~~~~~~~v~~~~i~laql~~~~~~~~lR~i 317 (748)
T KOG4151|consen 238 PSDLKFKKKSKCKLKAAQEDPVSDTVKVMDKEQLLEEILAVGGSQDELAQVWRTLKLVYGDDIRLAQLPLNCTVKILREI 317 (748)
T ss_pred cccchhhhhhhhhhhhhcCCcccchhhhhhHHHHHHHhhcccccchHHhhhhhhhhhhhccHHHHHhcchhhchHHHHHH
Confidence 01000 01111111111222222222221 235678999999999999999999999999999999
Q ss_pred HHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCC-ceEEEEEeeCCCCCCcccCCCccccccccccCCcccc
Q 005002 289 VRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQS-FLRLYIAEVSPDQEPAYDGIGSQDEKHKLEEEPRNIV 367 (720)
Q Consensus 289 v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~-~~rL~v~ev~p~~e~~~~~~~~~~~~~~~~~~~~~~~ 367 (720)
|.+ ||++..|+|||+|-+||+||||++++|+|+.+.+.+.+ .+|+|+++|||+|+|.+.........-+.+..-++..
T Consensus 318 i~~-~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~r~~~ve~s~~qd~ry~s~~a~~ke~~i~d~~s~~a 396 (748)
T KOG4151|consen 318 IHS-FPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTLRFYVVEVSPEQDPRYLSIDAELKELKIEDSSSSKA 396 (748)
T ss_pred Hhc-ccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHhhhheeecCccccchhhccccchhhhhccccchHHH
Confidence 999 99999999999999999999999999999999987777 8999999999999998877655545555554444444
Q ss_pred ccCccccccccCCCCcchhhHHHHHHHHHhhhhcCCCccccchHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHH
Q 005002 368 ENGKVGKVVEIEPQPTCIEDWIIEFAQLFKNHVGFDSDSFLNLHELGMKLYSEAMEDTVTSEEAQELFEMAADNFQEMAA 447 (720)
Q Consensus 368 ~~~~~~~~~~~~~~~~~id~w~~~fa~lf~~~~g~~~d~~l~l~~~g~~~~~eale~~v~~~~a~~lf~~a~~kfqe~aa 447 (720)
.||..+...+. |+|+|+|||++|++||+++||||.||++||.|+.+||||+|
T Consensus 397 ln~l~~~~~~~----------------------------~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~ 448 (748)
T KOG4151|consen 397 LNGLKGDAVES----------------------------YLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAA 448 (748)
T ss_pred HHhhhcccccc----------------------------cccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Confidence 44443211111 99999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHhhHHHHHHHhHhh
Q 005002 448 LAVFNWGNIHLSRARKRIFFPEDGLRESILAQVTVAHEWAKKEYAMAGMRYQEALKIKQDFYEGLLALGQQQFEQAKLCW 527 (720)
Q Consensus 448 ~a~fnwgnvhm~~ark~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~a~~kye~a~~ikpdf~e~~~algq~~fe~akl~~ 527 (720)
+++|||||||||+|||+++++++++.+++++++. |+..+|..|++||+.+..|||+||+++|+|||||||.|||+|
T Consensus 449 ~~~~n~~~v~~~r~rk~~~~~~~~~~~svakt~~----~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~ 524 (748)
T KOG4151|consen 449 LSPLNWGNVHMSRARKRLSLDEDPSCESVAKTVS----WAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKW 524 (748)
T ss_pred ccccccchHHHHHHHHhhccCcchhhhHHHHHHH----HHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHH
Confidence 9999999999999999999999999999997766 999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HccCCCchHHHHHHHHccccCcCCCCCCcchHHHhh
Q 005002 528 YYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQMWEEMEEQR-LNGLSKYDKYKAQLQKMGLDGLFKDTSPEESAEQAA 606 (720)
Q Consensus 528 ~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~w~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 606 (720)
||||++.+|..+|.+.||..+|++|+.+|++||++||.+|+++ |++.+.+++++ .++..++++...-++.+++++|++
T Consensus 525 ~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~-i~ke~~~~~ie~~~~ee~~~lqra 603 (748)
T KOG4151|consen 525 YHALAGKIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK-ILKEKALGKIEELMTEENPALQRA 603 (748)
T ss_pred HHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH-HHHHhcchhhHHHhhcccHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999998 789999887666689999999999
Q ss_pred chhhhHHHHhhhhhhHHHHHHhhccccchHHHHHHHHHHHHhcCCChhH-HHHHHhhcccc-cccccc------------
Q 005002 607 NMSSQIYLLWGTLLYERSVVEYKLELPTWEECLEVAVEKFELAGASPTD-IAVMIKNHCSN-ETALEG------------ 672 (720)
Q Consensus 607 ~~~~qi~~~wg~~l~e~s~~~~~~g~~~w~~~l~~avekf~~ag~~~~d-i~~~~knh~~~-~~~~~~------------ 672 (720)
.|++|||++||.+|||||+++++.|++.|..++++++|+|++|||+..| |.++++|||++ ..+++|
T Consensus 604 a~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~ 683 (748)
T KOG4151|consen 604 ALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED 683 (748)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch
Confidence 9999999999999999999999999999999999999999999999999 99999999995 223343
Q ss_pred ----------------ccccHHHHHHHHHHHHhhhhhccCCCccccchhhhccchhhhhhhhc
Q 005002 673 ----------------FGFKIDEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRVPKLYHILEN 719 (720)
Q Consensus 673 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (720)
.||+|.++++.|+.||..++||.| +..|.||++.|.||.|+|.
T Consensus 684 ~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~----~~a~~~~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 684 DEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL----NRAPKREDAAPCLSAAEEY 742 (748)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh----hhhhhhhhhhhHHHHHHHh
Confidence 599999999999999999999999 9999999999999999875
No 2
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=99.84 E-value=3.8e-21 Score=166.14 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=61.0
Q ss_pred eeeeeecCceEEEeccC-CCCHHHHHHHHHhhc----CCCCceeEEeeCCCCCeeeecCchHHHHHHHhhc
Q 005002 262 TVKLVFGDDIRWAQLPV-NCSIRLVRDIVRDRF----PSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFN 327 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~-~~s~~~L~~~v~~kF----~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~ 327 (720)
.||++||+|||++++|. +|||.+|+++|+++| |++++|+|||+|+|||||||||++||++|+++++
T Consensus 2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~ 72 (81)
T cd06401 2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR 72 (81)
T ss_pred eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence 58999999999999997 589999999998666 6779999999999999999999999999999873
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=6.3e-20 Score=192.16 Aligned_cols=124 Identities=31% Similarity=0.499 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK 123 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K 123 (720)
-...|+.+|.+||.+++.++|.+|+..|++||.++|+++ ++|+|||++|++| |+|+.|+++|..||.+||.|.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~L--g~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKL--GEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHh--cchHHHHHHHHHHHhcChHHHH
Confidence 357899999999999999999999999999999999999 7999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+|.|+|.+|+.+|+|++|+..|++||.++|+|..++..|..+...+.+..
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999886543
No 4
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=9.3e-18 Score=183.93 Aligned_cols=129 Identities=31% Similarity=0.522 Sum_probs=107.7
Q ss_pred CCCCCCChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 32 GSSKAFDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINEC 111 (720)
Q Consensus 32 ~ss~a~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~ 111 (720)
....++.++.. ++.|..+|.+||.+|+.|.|++||.+|++||.++|+.+ ++|.||++||..+ |+|++.+++|
T Consensus 101 ~~~~a~~~e~~--~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep----iFYsNraAcY~~l--gd~~~Vied~ 172 (606)
T KOG0547|consen 101 EQKKAMLKEER--LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP----IFYSNRAACYESL--GDWEKVIEDC 172 (606)
T ss_pred hhhhccChHHH--HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc----hhhhhHHHHHHHH--hhHHHHHHHH
Confidence 44444444444 59999999999999999999999999999999999987 6999999999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHh
Q 005002 112 NLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP--NNSSALEVLESVKQSM 169 (720)
Q Consensus 112 ~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP--~n~~A~~~L~~lk~~l 169 (720)
.+||+++|+|+|||+||+.+++.+|++++|+.|+.-.. +.. .|....-.+.++++.+
T Consensus 173 TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~c-i~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 173 TKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLC-ILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHH-HhhhcccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987433 332 2344444444444433
No 5
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.80 E-value=1.4e-19 Score=159.58 Aligned_cols=76 Identities=34% Similarity=0.516 Sum_probs=70.8
Q ss_pred eeeeee-----cCceEEEec--cCCCCHHHHHHHHHhhcCCCC--ceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCce
Q 005002 262 TVKLVF-----GDDIRWAQL--PVNCSIRLVRDIVRDRFPSLK--GVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFL 332 (720)
Q Consensus 262 ~~K~~~-----g~DiR~~~~--~~~~s~~~L~~~v~~kF~~~~--~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~ 332 (720)
+||+.. ..|||||++ |.+|||.+|+++|+++||+++ +|+|||+|+|||+|||||++||++|+++++ .++|
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~-~~~~ 80 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN-DDTF 80 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC-CCcE
Confidence 678777 468999998 888999999999999999887 799999999999999999999999999986 8899
Q ss_pred EEEEEe
Q 005002 333 RLYIAE 338 (720)
Q Consensus 333 rL~v~e 338 (720)
||||++
T Consensus 81 RlyI~~ 86 (87)
T cd06402 81 RIYIKE 86 (87)
T ss_pred EEEEEe
Confidence 999987
No 6
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=159.80 Aligned_cols=127 Identities=31% Similarity=0.538 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK 123 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K 123 (720)
+..+..+|.+||.+|+.|+|.+|...|..||.+.|..+. .++.+|.|||+|++++ +.++.||.+|.+||+++|.|.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl--~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL--RKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh--hhHHHHHHHHHhhHhcCchhHH
Confidence 578999999999999999999999999999999998765 5899999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
|+.|||.+|..+.+|++|+.+|.+.+.++|.+..++..+.++-..+.++.
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERN 219 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999887776443
No 7
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-16 Score=171.97 Aligned_cols=139 Identities=30% Similarity=0.421 Sum_probs=124.2
Q ss_pred CCCCCCCChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-----------hHHHHHHHHHHHHHHc
Q 005002 31 RGSSKAFDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-----------DVAYLRSNMAGCYMQM 99 (720)
Q Consensus 31 ~~ss~a~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-----------d~a~l~~NrAa~y~kL 99 (720)
...++-+... ..+..|...++.||.+|+.|+|..|+..|.+|+...+.... .+..+|.|+|+||.+|
T Consensus 193 ~~~s~~~~~~--e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 193 EDESWKMFAE--ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL 270 (397)
T ss_pred cccccccchH--HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3444444444 45699999999999999999999999999999999885432 1478999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 100 GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 100 ~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
++|..|+..|+++|+++|+|+||+||+|.||..+|+|+.|+.+|++|++++|+|..+...|..|.+.+.+..
T Consensus 271 --~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 271 --KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred --hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886544
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=5.9e-13 Score=154.27 Aligned_cols=112 Identities=29% Similarity=0.477 Sum_probs=100.9
Q ss_pred CCCChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 35 KAFDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114 (720)
Q Consensus 35 ~a~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA 114 (720)
+.++++.. ...+..+++.|+.+|+.|+|++|+..|++||.+.|+ + .+|+|+|.||+++ |+|++|+.+|++|
T Consensus 116 ~~~~~~~~--~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l--~~~~~Ai~~~~~a 186 (615)
T TIGR00990 116 ANLSEEER--KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNAL--GDWEKVVEDTTAA 186 (615)
T ss_pred ccCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHh--CCHHHHHHHHHHH
Confidence 34444444 378999999999999999999999999999999996 4 4899999999998 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 115 LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 115 LeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+
T Consensus 187 l~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 187 LELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999998888776644
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.5e-15 Score=166.89 Aligned_cols=119 Identities=28% Similarity=0.539 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+.+.+.++.||.+|+.|+|..|+.+|++||..+|+++ .+|+|||+||.++ +++..|+.+|+.+|+++|++.++|
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da----~lYsNRAac~~kL--~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA----RLYSNRAACYLKL--GEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCchHHHHH
Confidence 4478889999999999999999999999999999999 7999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+|.|.|+..+.+|+.|+..|++++.+||++..+...+.+|...+.
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998763
No 10
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.62 E-value=1.7e-15 Score=131.00 Aligned_cols=76 Identities=32% Similarity=0.496 Sum_probs=69.7
Q ss_pred ceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCC-CceeEEeeCCCCCeeeecCchHHHHHHHhhcC--CCceEEEE
Q 005002 261 KTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSL-KGVLVKYKDQEGDLVTITTTDELRFVEMLFNS--QSFLRLYI 336 (720)
Q Consensus 261 ~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~-~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~--~~~~rL~v 336 (720)
.+||+.||+|+|++.+|.++||.+|+.+|.++|+.. ..+.|+|+|+|||+|||+|++||.+|++.+.. ...++|+|
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v 80 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRLHV 80 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEEEe
Confidence 579999999999999999999999999999999854 57999999999999999999999999998854 46788887
No 11
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.60 E-value=4e-15 Score=129.11 Aligned_cols=79 Identities=35% Similarity=0.596 Sum_probs=72.4
Q ss_pred cceeeeeecCceEE-EeccCCCCHHHHHHHHHhhcCCC-CceeEEeeCCCCCeeeecCchHHHHHHHhhcC--CCceEEE
Q 005002 260 TKTVKLVFGDDIRW-AQLPVNCSIRLVRDIVRDRFPSL-KGVLVKYKDQEGDLVTITTTDELRFVEMLFNS--QSFLRLY 335 (720)
Q Consensus 260 ~~~~K~~~g~DiR~-~~~~~~~s~~~L~~~v~~kF~~~-~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~--~~~~rL~ 335 (720)
|..||+.|++|+|+ +.+|.++||.+|+.+|+.+|+.. ..|.|+|+|+|||+|||+|++||..|++.+.. .+.+||+
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~~~~lrl~ 80 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESGSKTLRLF 80 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 46799999999999 99999999999999999999866 78999999999999999999999999998743 4589999
Q ss_pred EEe
Q 005002 336 IAE 338 (720)
Q Consensus 336 v~e 338 (720)
|++
T Consensus 81 v~~ 83 (84)
T PF00564_consen 81 VQD 83 (84)
T ss_dssp EEE
T ss_pred EEe
Confidence 975
No 12
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.57 E-value=9.4e-15 Score=155.10 Aligned_cols=125 Identities=27% Similarity=0.405 Sum_probs=116.6
Q ss_pred ChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 38 DEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 38 d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
+.-...+++.+.+++++||.||++|.|++||.+|.+++.++|.|+ ++|.|||.+|+++ ..|..|..+|+.||.+
T Consensus 87 d~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----V~~~NRA~AYlk~--K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 87 DPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP----VYHINRALAYLKQ--KSFAQAEEDCEAAIAL 160 (536)
T ss_pred cHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc----cchhhHHHHHHHH--HHHHHHHHhHHHHHHh
Confidence 333455789999999999999999999999999999999999999 6999999999998 9999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 118 SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 118 dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
+-.|.+||.|||.+...||+..+|..+|+.+|.|+|++...+..+..+...
T Consensus 161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL 211 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999888888777653
No 13
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=99.57 E-value=8.7e-15 Score=128.37 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=69.6
Q ss_pred eeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCC--CceeEEeeCCCCCeeeecCchHHHHHHHhhcC--CCceEEEEE
Q 005002 262 TVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSL--KGVLVKYKDQEGDLVTITTTDELRFVEMLFNS--QSFLRLYIA 337 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~--~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~--~~~~rL~v~ 337 (720)
+||++||+|++++.+|.+++|.+|++.|+++|+.. .+|.|||.|+|||.|+||||+||..|+...+. ...++|+|-
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 79999999999999999999999999999999755 58999999999999999999999999887744 566999884
No 14
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.57 E-value=1.5e-14 Score=129.13 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=69.7
Q ss_pred eeeeeecCceEEEeccC-----CCCHHHHHHHHHhhcCCC--CceeEEeeCCCCCeeeecCchHHHHHHHhh---cCCCc
Q 005002 262 TVKLVFGDDIRWAQLPV-----NCSIRLVRDIVRDRFPSL--KGVLVKYKDQEGDLVTITTTDELRFVEMLF---NSQSF 331 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~-----~~s~~~L~~~v~~kF~~~--~~~~ikYkDedGDlVtitsd~dl~~A~~~~---~~~~~ 331 (720)
+||+.||+|+|||.+|. +++|.+|.++|+++|+.. ..|.|+|+|+|||+|||+||+||.+|++.. ....+
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~ 81 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNP 81 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCce
Confidence 69999999999999996 799999999999999644 579999999999999999999999999975 23577
Q ss_pred eEEEEEee
Q 005002 332 LRLYIAEV 339 (720)
Q Consensus 332 ~rL~v~ev 339 (720)
|||+|+-.
T Consensus 82 lrl~v~~~ 89 (91)
T cd06398 82 LRIDVTVD 89 (91)
T ss_pred EEEEEEEe
Confidence 99998754
No 15
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1e-13 Score=147.12 Aligned_cols=115 Identities=26% Similarity=0.393 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+.|..++++||.||+..+|..|+..|+++|+....++...+.+|+|||+|.+.+ |+|..||.+|.+|+.++|++.|||
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l--~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL--GNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHhcCcchhhhh
Confidence 689999999999999999999999999999999888877799999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVL 162 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L 162 (720)
+|=|.|++.|.++.+|+..++..+.++-....+....
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999988876666554443
No 16
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=99.56 E-value=1.4e-14 Score=126.04 Aligned_cols=66 Identities=27% Similarity=0.317 Sum_probs=62.3
Q ss_pred eeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCC--ceeEEeeCCCCCeeeecCchHHHHHHHhhc
Q 005002 262 TVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLK--GVLVKYKDQEGDLVTITTTDELRFVEMLFN 327 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~--~~~ikYkDedGDlVtitsd~dl~~A~~~~~ 327 (720)
++|+.|++||+++.++.++||.+|.+.|++.|+... +|+|||+|||||.|||+|++||.+|+.+..
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 699999999999999999999999999999998665 699999999999999999999999988863
No 17
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.54 E-value=2.7e-14 Score=123.13 Aligned_cols=75 Identities=28% Similarity=0.422 Sum_probs=69.0
Q ss_pred eeeeeecCceEEEecc-CCCCHHHHHHHHHhhcCCC-CceeEEeeCCCCCeeeecCchHHHHHHHhhc--CCCceEEEE
Q 005002 262 TVKLVFGDDIRWAQLP-VNCSIRLVRDIVRDRFPSL-KGVLVKYKDQEGDLVTITTTDELRFVEMLFN--SQSFLRLYI 336 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~-~~~s~~~L~~~v~~kF~~~-~~~~ikYkDedGDlVtitsd~dl~~A~~~~~--~~~~~rL~v 336 (720)
+||+.|++|+|++.+| .++||.+|+.+|.++|+.. ..|.|+|+|+|||+|||+|++||.+|++.+. ..+.++|+|
T Consensus 2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v 80 (81)
T cd05992 2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLFV 80 (81)
T ss_pred cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEEe
Confidence 5899999999999998 9999999999999999854 6899999999999999999999999999986 367788876
No 18
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.2e-14 Score=158.18 Aligned_cols=113 Identities=25% Similarity=0.397 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+.++++.||.+|..|||+.|+.+|+.||.++|.|| ++|+||++||..+ ++|.+|+.+..++++++|+|+++|.|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh----vlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r 75 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH----VLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSR 75 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc----chhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHH
Confidence 56889999999999999999999999999999999 6999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
+|.++..+|+|++|+..|.+.|..+|+|.....+|..+.
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999988
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.53 E-value=1.4e-13 Score=150.36 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..++.+|+.+|..|+|.+|+..|++||.++|+++ .+|++||.||+++ |+|++|+.+|++||.++|+++.+|++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 45688999999999999999999999999999998 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+|.+|+.+|+|++|+..|++++.++|++..+...+..|...+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988874
No 20
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=99.51 E-value=3.3e-14 Score=125.16 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=63.8
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhc
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFN 327 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~ 327 (720)
..+|||.|++|+|.+.||.+++|.+|.++|+++|+-..+|.|||+|+ ||+|||+|++||.+|+.+++
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-GDMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-CCCccccCHHHHHHHHHHHH
Confidence 45799999999999999999999999999999998778999999999 99999999999999999874
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=3.8e-13 Score=128.70 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
+...|..+++.|+|++|+..|.+++.++|.+. .+|.++|.++..+ |+|++|+..|.+|+.++|+++.+++++|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 55689999999999999999999999999998 5999999999998 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|+..+|++++|+..|++++.++|+++.++..++.++..++
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887664
No 22
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.7e-13 Score=146.03 Aligned_cols=123 Identities=30% Similarity=0.427 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
.+.....++.||.+|+.|+|..|.+.|+.||.++|.+....+.+|.|||.++..+ |+..+||.+|+.|+.+||.+.+|
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL--grl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL--GRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc--CCchhhhhhhhhhhhcCHHHHHH
Confidence 4677889999999999999999999999999999998877889999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|+++|.||+.++++++|+++|++|+++.-+ ...++.+..+...+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999999999999999999998866 666777777766664
No 23
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=99.44 E-value=5.6e-13 Score=116.23 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=69.0
Q ss_pred eeeeeecCceEEEeccC--CCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhc-CCCceEEEEEe
Q 005002 262 TVKLVFGDDIRWAQLPV--NCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFN-SQSFLRLYIAE 338 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~--~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~-~~~~~rL~v~e 338 (720)
+||++|++|++++.++. ++||.+|...|+++|.-. +|.|||.|+|||-|||||+.||..|+.++. .++.+|++|.|
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v~~ 80 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNVYE 80 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEEec
Confidence 69999999999999988 889999999999999644 999999999999999999999999999884 45668888864
No 24
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.8e-12 Score=130.79 Aligned_cols=140 Identities=26% Similarity=0.347 Sum_probs=120.1
Q ss_pred CCCCCCCCChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCcc----h--HHHHHHHHHHH
Q 005002 30 DRGSSKAFDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL--------PKNHI----D--VAYLRSNMAGC 95 (720)
Q Consensus 30 ~~~ss~a~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~--------P~~~~----d--~a~l~~NrAa~ 95 (720)
....+|.++.+... +....+.++||.+|+.|+|.+|...|..||... |..++ + ...++.|.+.|
T Consensus 162 Yq~e~WqlsddeKm--kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC 239 (329)
T KOG0545|consen 162 YQRETWQLSDDEKM--KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQC 239 (329)
T ss_pred hccccccCCchHhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHH
Confidence 44678888888876 888999999999999999999999999999544 44332 1 36799999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhhhc
Q 005002 96 YMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN-SSALEVLESVKQSMIEKG 173 (720)
Q Consensus 96 y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n-~~A~~~L~~lk~~l~eka 173 (720)
++.. |+|.+++++|+..|..+|+|.||||+||.++....+..+|..||.++|.++|.- +...+.|..+..++.++.
T Consensus 240 ~L~~--~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~ 316 (329)
T KOG0545|consen 240 LLKK--EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQ 316 (329)
T ss_pred HhhH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhh
Confidence 9998 999999999999999999999999999999999999999999999999999985 445566777766665443
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.35 E-value=2.2e-12 Score=144.88 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+.++.+.||++-..+.|+.|+..|.+|+.+.|+++ .+|.|+|.+|... |..+.||..|.+||+++|+++.||.+
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A----~a~gNla~iYyeq--G~ldlAI~~Ykral~~~P~F~~Ay~N 325 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA----VAHGNLACIYYEQ--GLLDLAIDTYKRALELQPNFPDAYNN 325 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch----hhccceEEEEecc--ccHHHHHHHHHHHHhcCCCchHHHhH
Confidence 56788999999999999999999999999999988 5999999999985 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKV 205 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~ 205 (720)
+|.++-..|+..+|..+|.+||.+.|++++++.+|+.++..++....+ .-.++...- |.-..+..+++.++++.+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcc
Confidence 999999999999999999999999999999999999999988754433 345666666 777778889999999988
Q ss_pred hhhh
Q 005002 206 KKKK 209 (720)
Q Consensus 206 kkkK 209 (720)
+.++
T Consensus 403 nl~~ 406 (966)
T KOG4626|consen 403 NLDD 406 (966)
T ss_pred cHHH
Confidence 7755
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=3.1e-11 Score=111.63 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|+|.+|+..|++++.++|.++ .++.++|.||+.+ +++.+|+..+++++.++|+++..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----RYWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4678899999999999999999999999999988 5999999999998 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
|.+|..+|+++.|+..|++++.++|++.........+...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777776654
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.28 E-value=7.4e-11 Score=136.91 Aligned_cols=151 Identities=16% Similarity=0.120 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|++++|+..|++++.++|.+. ..|.++|.+|+.+ |+|++|+..++++|+++|+++.+|+
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNLEL--GDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 445678899999999999999999999999999988 5999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~~i~k~k 204 (720)
.+|.++..+|++++|+.+|++++.++|++..++..++.+...+++...+.. .+..... |..|.....++.++...
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999988875544333 4455555 77777777777777664
Q ss_pred hh
Q 005002 205 VK 206 (720)
Q Consensus 205 ~k 206 (720)
++
T Consensus 481 g~ 482 (615)
T TIGR00990 481 NK 482 (615)
T ss_pred cC
Confidence 43
No 28
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=99.28 E-value=1.1e-11 Score=106.87 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=59.8
Q ss_pred eeeeeecCceEEEeccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCCCeeeecCchHHHHHHHhh
Q 005002 262 TVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEGDLVTITTTDELRFVEMLF 326 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedGDlVtitsd~dl~~A~~~~ 326 (720)
++|+.|++|+|||.+|...||..|.+++...|.- ...|.|+|-|+|||.|||+|++||+-+....
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~ 67 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLS 67 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhc
Confidence 6899999999999999999999999999999941 2259999999999999999999999998865
No 29
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.27 E-value=5.4e-12 Score=139.64 Aligned_cols=120 Identities=25% Similarity=0.369 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.|..++++++.+|..++|+.|+..|.+||+++|++. .++.||+.+|++. ++|..|+.++.+||+++|.+.++|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca----~~~anRa~a~lK~--e~~~~Al~Da~kaie~dP~~~K~Y~ 76 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA----IYFANRALAHLKV--ESFGGALHDALKAIELDPTYIKAYV 76 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce----eeechhhhhheee--chhhhHHHHHHhhhhcCchhhheee
Confidence 577899999999999999999999999999999999 5999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
|+|.+++.++++.+|+.+|+....+.|+++.+.+.+..|...+.+.
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=1.3e-10 Score=113.31 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.-..+...|..++..|++++|...|+-.+.++|.++ ..|+|+|.|+-.+ |+|.+||..|.+|+.++|+++.+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----~y~~gLG~~~Q~~--g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----DYWFRLGECCQAQ--KHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345888999999999999999999999999999999 5999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+.|.||+.+|+.+.|...|+.|+.+.-.++.-.....+...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 99999999999999999999999987554444444444433
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.5e-10 Score=123.12 Aligned_cols=106 Identities=22% Similarity=0.181 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+.++|..+...|++.+|+..|++|+.++|+++ .+|+++|.+|..+ |+|+.|+..++++|+++|++..++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~ 135 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAY 135 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3466789999999999999999999999999999998 5999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
+++|.+++..|++++|+.+|++++.++|+++.
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999973
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-10 Score=131.15 Aligned_cols=143 Identities=20% Similarity=0.228 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.|..+.+.||.+..+|.++.|...|.+|++..|... .+++|+|.+|-+. |++++|+.+|..||+++|.+..+|.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a----aa~nNLa~i~kqq--gnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA----AAHNNLASIYKQQ--GNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh----hhhhhHHHHHHhc--ccHHHHHHHHHHHHhcCchHHHHHH
Confidence 456677888888888888888888888888888777 5899999999885 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc--cChhHHhhhcCCCCCCCCcchhhHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG--IDIDEKMKEFGLDSSGEAHGALRFR 198 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka--~a~~ek~~~L~~~~P~~P~~~~~l~ 198 (720)
++|..|-.+|+.+.|+.+|.+|+.++|...+|..+|+.+++.-+... +..-+....+. |..|.++-++.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk---PDfpdA~cNll 497 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK---PDFPDAYCNLL 497 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC---CCCchhhhHHH
Confidence 99999999999999999999999999999999999999998776433 33336667777 88777776664
No 33
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=8.9e-10 Score=98.31 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKAL 125 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy 125 (720)
..+...|..++..|+|++|+..|.+++...|++.. ...+++++|.++++. ++|+.|+..+..++...|++ +.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQ--GKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 46788999999999999999999999999997642 235889999999998 99999999999999999885 6789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
+.+|.++..+|++++|+..|.+++...|++..+...+.+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 999999999999999999999999999999887765543
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-10 Score=119.65 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+++.||.+|..++|..|+..|.+||.++|..+ .+|.|+|.||+++ .+|+.+..+|.+||+++|+.++++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~----~Y~tnralchlk~--~~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA----SYYTNRALCHLKL--KHWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc----hhhhhHHHHHHHh--hhhhhhhhhHHHHHhcChHHHHHH
Confidence 3577999999999999999999999999999999988 6999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
|.+|.++.....|++|+..+.+|+.+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=7.9e-10 Score=111.60 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HHcCCCC--HHHHHHHHHHHHHhCCCCHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCY-MQMGLGE--FPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y-~kL~~gd--yeeAI~d~~kALeLdP~~~KA 124 (720)
+..+...|..+...|+|++|+..|++|+.+.|+++ .+++++|.|+ ... |+ +.+|+..++++++++|+++.+
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~--g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQA--GQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCCChhH
Confidence 34578889999999999999999999999999988 5889999885 554 55 599999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
++.+|.++..+|+|++|+..|++++.++|.+..-...+..
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999999999999999998876544444433
No 36
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=99.14 E-value=1.8e-10 Score=99.33 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=66.5
Q ss_pred eeeeeecCceEEEeccCC--CCHHHHHHHHHhhcC-CCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEEEE
Q 005002 262 TVKLVFGDDIRWAQLPVN--CSIRLVRDIVRDRFP-SLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLYIA 337 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~~--~s~~~L~~~v~~kF~-~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~v~ 337 (720)
.||..|+.|.||++++.+ .+|.++...+.+.+. ..-+|+|+|-|.+|||++|++|+.+.-|++++ .-.+||+|+
T Consensus 2 eVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa--~plLRl~iq 78 (80)
T cd06403 2 EVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSA--NPLLRIFIQ 78 (80)
T ss_pred ceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcC--CCceEEEEE
Confidence 489999999999999877 899999999999993 12479999999999999999999999999976 567999986
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=3e-09 Score=103.20 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|..++..|+|++|+..|.+++...|.+. .++..+|.+|+.+ |++++|+..+.++++++|.+..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~ 102 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQL--GELEKAEDSFRRALTLNPNNGDVL 102 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHH
Confidence 3466788899999999999999999999999999887 5899999999997 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSME--PNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~Ld--P~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
+.+|.++...|++++|+..|.+++... |.....+..++.+....++...+ ...+..... |..+.....++.++
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~ 179 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---PQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCChHHHHHHHHHH
Confidence 999999999999999999999999864 45566777788777776644333 234455555 55555555566666
Q ss_pred HHHhhhh
Q 005002 202 KEKVKKK 208 (720)
Q Consensus 202 k~k~kkk 208 (720)
-..++..
T Consensus 180 ~~~~~~~ 186 (234)
T TIGR02521 180 YLRGQYK 186 (234)
T ss_pred HHcCCHH
Confidence 5544443
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.11 E-value=6.4e-10 Score=106.51 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=104.6
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 68 MLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 68 l~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
...|++|++++|++ +.++|.++.++ |+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|.+
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35689999999974 45789999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHH
Q 005002 148 VLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRK 199 (720)
Q Consensus 148 AL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~ 199 (720)
++.++|+++.++..++.+...+++...+ .......+. |..|..+...+.
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---p~~~~~~~~~~~ 134 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---YADASWSEIRQN 134 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHH
Confidence 9999999999999999999999865544 346677777 777776655443
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=7.1e-09 Score=100.52 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--SKYSKAL 125 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--P~~~KAy 125 (720)
+..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|+.. |++++|+..+.+++... |.....+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPARSL 138 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHc--ccHHHHHHHHHHHHhccccccchHHH
Confidence 44667789999999999999999999999999987 5899999999997 99999999999999864 5667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~ 174 (720)
+.+|.++...|++++|...|.+++..+|++..++..+..+....++...
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999998888775443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.6e-09 Score=119.57 Aligned_cols=148 Identities=22% Similarity=0.270 Sum_probs=130.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
-.||-+--++++++|+.+|++||+++|... .+|.-+|.=|+.| ++-..||..|++|++++|.+.+|+|.+|++|
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~----~aWTLmGHEyvEm--KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYL----SAWTLMGHEYVEM--KNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchh----HHHHHhhHHHHHh--cccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 468888899999999999999999999988 6999999999999 9999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc--cChhHHhhhcCCCCCCCCcchhhHHHHHHHHhhhhh
Q 005002 133 KALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG--IDIDEKMKEFGLDSSGEAHGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka--~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kkkK 209 (720)
.-++-+.=|+-+|++|+.+-|+|+..+..|+.|+..+.... +..-..+.... .++....-.+++.+++.+...+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999887443 33335556666 5566667778888887766544
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=3.4e-10 Score=128.94 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
.+.+...||++--+++|+.||..|.+||.++|++. ++|.-+|.=+... .+|+.|..+|+.||.++|++..|||.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~--ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIAT--EEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhh--HHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 34888999999999999999999999999999876 4555555555554 56666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~ 184 (720)
+|.+|.++++++.|.-.|++|+.++|.|....--++..+.+++....+.. +++.-++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666555553333322 4444444
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=6.2e-09 Score=106.80 Aligned_cols=153 Identities=18% Similarity=0.085 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+....+.|..|++.|++..|...+++||+++|++. .+|.-||.+|.++ |+.+.|-+.|++||.++|++...+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~--Ge~~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKL--GENDLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHc--CChhhHHHHHHHHHhcCCCccchh
Confidence 5677888999999999999999999999999999999 5999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSM--EPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~L--dP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
.+.|-=++..|+|++|...|++|+.. -|.-...+.+++.|-...++...+.. .+...+. |..|++...+....
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d---p~~~~~~l~~a~~~ 183 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD---PQFPPALLELARLH 183 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC---cCCChHHHHHHHHH
Confidence 99999999999999999999999963 34567889999999988886555443 5566666 66666555555544
Q ss_pred HHHhhh
Q 005002 202 KEKVKK 207 (720)
Q Consensus 202 k~k~kk 207 (720)
-+.++.
T Consensus 184 ~~~~~y 189 (250)
T COG3063 184 YKAGDY 189 (250)
T ss_pred Hhcccc
Confidence 444443
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=2.6e-09 Score=87.01 Aligned_cols=99 Identities=29% Similarity=0.465 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|++.+|+..|.+++...|.+. .++.++|.+|... +++++|+..+++++.+.|.+..+++.+|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 467789999999999999999999999999887 5899999999997 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
.++...|+++.|...+.+++.++|.
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999998874
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=2.5e-09 Score=123.23 Aligned_cols=141 Identities=11% Similarity=-0.066 Sum_probs=111.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDF 140 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryee 140 (720)
.+++.+|+..|++|++++|+++ .+|..+|.++... |++++|+..|++|++++|+++.+++.+|.+|..+|++++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNP----QALGLLGLINTIH--SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3558999999999999999999 5999999999987 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhc-CCCCCCCCcchhhHHHHHHHHhhhhhc
Q 005002 141 AFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEF-GLDSSGEAHGALRFRKLVKEKVKKKKK 210 (720)
Q Consensus 141 Al~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L-~~~~P~~P~~~~~l~~i~k~k~kkkK~ 210 (720)
|+..|++++.++|.+..+...+..+....++...+ ...+.... + |..|.....++.++...|+....
T Consensus 391 Ai~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~---p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 391 ALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL---QDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999987655544444444432222 22333222 3 55666666677777776665443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.3e-09 Score=118.77 Aligned_cols=156 Identities=20% Similarity=0.202 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
-.+|..|.-.|.-+|-.|++-+|...|+++|.++|.+. .+|..||.+|+.. .+-.+-..++++|..+||.|+..
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCch
Confidence 47799999999999999999999999999999999988 4799999999997 89999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
||.||..+.-+++|++|+.+|+++++|+|+|.-+.-.+.-+.-+......... +..+ .+.|..|.++.-.+.++-
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k---kkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAK---KKFPNCPEVYNLFAEILT 473 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCchHHHHHHHHHh
Confidence 99999999999999999999999999999999988888887777663332221 2222 234788888888899988
Q ss_pred HHhhhhh
Q 005002 203 EKVKKKK 209 (720)
Q Consensus 203 ~k~kkkK 209 (720)
.+++..+
T Consensus 474 DqqqFd~ 480 (606)
T KOG0547|consen 474 DQQQFDK 480 (606)
T ss_pred hHHhHHH
Confidence 8665544
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=3.7e-09 Score=121.76 Aligned_cols=121 Identities=15% Similarity=0.046 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+...|++++|+..|++|++++|+++ .+|+++|.+|..+ |++++|+..++++++++|.++.+++.+
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~--G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLFMA--GQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 3456789999999999999999999999999999 5899999999997 999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhhhccC
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSME-PNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~Ld-P~n~~A~~~L~~lk~~l~eka~a 175 (720)
+.+++.+|++++|+..+++++..+ |+++.++..++.++..+++...+
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 888999999999999999999875 88999999999998888754433
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.03 E-value=7.9e-10 Score=91.50 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN-RLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG-ryeeAl~d~ekAL~LdP 153 (720)
+.+|.++|.+++.. ++|++|+..|++||+++|+++.+++++|.||..+| ++++|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35777777777776 77777777777777777777777777777777777 67777777777777776
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=5.6e-10 Score=127.20 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
++-..|-.+.....|+.|+.+|++||..+|++. .+|+.+|.+|++. +.++.|.-++.+|++++|.+.-.+...|
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY----nAwYGlG~vy~Kq--ek~e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHY----NAWYGLGTVYLKQ--EKLEFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh----HHHHhhhhheecc--chhhHHHHHHHhhhcCCccchhHHhhhh
Confidence 445567778888999999999999999999999 6999999999997 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHHHHHHHHhhh
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFRKLVKEKVKK 207 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~~i~k~k~kk 207 (720)
..+.++|+.++|+..|++|+.++|.|+-.+-....++..+++...+.. +..+.+. |.+......+|++++..+++
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v---P~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV---PQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999988876554443 6667777 89999999999999999988
Q ss_pred hhccc
Q 005002 208 KKKNG 212 (720)
Q Consensus 208 kK~~k 212 (720)
...-+
T Consensus 608 ~~Al~ 612 (638)
T KOG1126|consen 608 DLALL 612 (638)
T ss_pred hHHHH
Confidence 77543
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=9.4e-09 Score=100.54 Aligned_cols=107 Identities=27% Similarity=0.311 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|..++..|+|++|+.+|.+++.+.|+.. +.+.++.++|.+|..+ |+|++|+..+.+++.++|++..++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASN--GEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHH
Confidence 5677899999999999999999999999999987644 2346899999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCC
Q 005002 126 LKRAQCYKALNR--------------LDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 126 ~rrA~Ay~~LGr--------------yeeAl~d~ekAL~LdP~n 155 (720)
+.+|.+|..+|+ ++.|+..+++++.++|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999998 678888888888889887
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=1.1e-08 Score=103.57 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK---A 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K---A 124 (720)
+..+...|..++..|+|++|+..|++++...|.++ ....+++++|.+|+.+ +++++|+..++++++..|+++. +
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKS--GDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 55889999999999999999999999999999876 2235789999999998 9999999999999999998776 7
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 125 LLKRAQCYKAL--------NRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 125 y~rrA~Ay~~L--------GryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
++.+|.++..+ |+++.|+..|++++..+|++..+...+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999987 8999999999999999999977654443
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=1.9e-09 Score=89.25 Aligned_cols=66 Identities=30% Similarity=0.471 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG-EFPRAINECNLALEVSS 119 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g-dyeeAI~d~~kALeLdP 119 (720)
|..+...|..++..|+|++|+..|++||+++|+++ .+|+++|.||+.+ | ++.+|+.++++||+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 67899999999999999999999999999999988 5999999999998 8 79999999999999998
No 52
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.95 E-value=8.2e-09 Score=102.66 Aligned_cols=97 Identities=29% Similarity=0.332 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHH------HHhhhhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCch
Q 005002 434 LFEMAADNFQEMAAL------AVFNWGNIHLSRARKRIFFPEDGLRESILAQVTVAHEWAKKEYAMAGMRYQEALKIKQD 507 (720)
Q Consensus 434 lf~~a~~kfqe~aa~------a~fnwgnvhm~~ark~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~a~~kye~a~~ikpd 507 (720)
+|+.|..+++...+. +|+|||-+..-.|+-+- ...+.+.|..|.+||++||.|+|+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~------------------g~es~~miedAisK~eeAL~I~P~ 67 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ------------------GPESKKMIEDAISKFEEALKINPN 67 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-------------------HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC------------------cchHHHHHHHHHHHHHHHHhcCCc
Confidence 789999999887776 99999999999988655 234456799999999999999999
Q ss_pred hhHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 005002 508 FYEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQ 561 (720)
Q Consensus 508 f~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~ 561 (720)
+|+++..||....++|+| +.+..+...+|.+|.+.|++|.+
T Consensus 68 ~hdAlw~lGnA~ts~A~l-------------~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFL-------------TPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh-------------cCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 44566889999999999999988
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=1.1e-08 Score=109.03 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeA 141 (720)
+..+.++..|.++|...|-+++..+..|+++|.+|..+ |++.+|+.+|++||+++|+++.+|+.+|.++..+|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46788999999999766655555568999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCC
Q 005002 142 FRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEA 191 (720)
Q Consensus 142 l~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P 191 (720)
+..|+++++++|++..++..++.+....++...+. ..+...+. |..|
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~ 166 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDP 166 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCH
Confidence 99999999999999999999999988877554443 35555555 5544
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.94 E-value=1.7e-08 Score=102.05 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=105.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY-KALNR-- 137 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay-~~LGr-- 137 (720)
.+++++++..|.+++..+|++. ..|.++|.+|+.+ |+++.|+..|.+|+.++|+++..++.+|.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5677999999999999999999 5999999999998 9999999999999999999999999999986 67788
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcC
Q 005002 138 LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 138 yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~ 184 (720)
+++|...+++++.++|++..++..++.+....++...+.. ++...+.
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5999999999999999999999999999998886655544 4555544
No 55
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.94 E-value=1.1e-08 Score=124.79 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=119.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
..+..+...|++++|+..|.+|+.++|+ . .+|.++|.++.++ |++++|+..+.+++.++|+++.+++.+|.++
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~----~a~~~LA~~l~~l--G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-A----NAYVARATIYRQR--HNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-H----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455566679999999999999999995 5 5889999999997 9999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHHHHHhhh
Q 005002 133 KALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLVKEKVKK 207 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kk 207 (720)
..+|++++|+..|++++.++|+++.++..++.+...+++...+. .++...+. |.........+.+...+...
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~---P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI---DNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCchhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999888655443 36666666 66655555556555555433
No 56
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=3.8e-08 Score=95.71 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+.+..+...|..++..|+|++|+..|.+|+.+.|+.. +.+.+|.|+|.+|..+ |++++|+..|.+|+.++|.+..++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~--g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSN--GEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHH
Confidence 5688899999999999999999999999999987643 3457999999999998 999999999999999999999999
Q ss_pred HHHHHHHH-------HcCCHH-------HHHHHHHHHHHcCCCCH
Q 005002 126 LKRAQCYK-------ALNRLD-------FAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 126 ~rrA~Ay~-------~LGrye-------eAl~d~ekAL~LdP~n~ 156 (720)
+.+|.++. .+|+++ +|+..|++++.++|++.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999998 777877 55555666777888764
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.93 E-value=2.4e-08 Score=122.08 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=129.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
+...|..+.+.|++++|+..|.+++.+.|.+. .++..++..+..+ |++++|+..+.+|++++|+ +.+++.+|.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~----~l~~~La~~l~~~--Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~ 617 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDN----ALYWWLHAQRYIP--GQPELALNDLTRSLNIAPS-ANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 56778999999999999999999999988876 4666777777776 9999999999999999996 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHhhhh
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKVKKK 208 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kkk 208 (720)
++..+|++++|+..|++++.++|++..++..++.+....++...+ ...+...+. |..+.....++.++...++..
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~---P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL---PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999888888754433 446677777 888888888888888888776
Q ss_pred hccch
Q 005002 209 KKNGK 213 (720)
Q Consensus 209 K~~k~ 213 (720)
....-
T Consensus 695 eA~~~ 699 (987)
T PRK09782 695 ATQHY 699 (987)
T ss_pred HHHHH
Confidence 65443
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.92 E-value=1.9e-08 Score=118.37 Aligned_cols=148 Identities=14% Similarity=0.035 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHhCCCCHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPR----AINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyee----AI~d~~kALeLdP~~~KAy~rr 128 (720)
..|..++..|++++|+..|.+++.+.|+++ .+++++|.+|..+ |++++ |+..|+++++++|+++.+++.+
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~----~~~~~Lg~~l~~~--G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l 290 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGA----ALRRSLGLAYYQS--GRSREAKLQAAEHWRHALQFNSDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc--CCchhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 347788899999999999999999999887 5899999999997 89885 8999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHHHHHHHHhh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFRKLVKEKVK 206 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~~i~k~k~k 206 (720)
|.++..+|++++|+..|++++.++|+++.++..+..++..+++...+.. ....... |..+......+..+...|+
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999888875544333 3344444 5444333334455555554
Q ss_pred hhh
Q 005002 207 KKK 209 (720)
Q Consensus 207 kkK 209 (720)
...
T Consensus 368 ~de 370 (656)
T PRK15174 368 TSE 370 (656)
T ss_pred HHH
Confidence 433
No 59
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=3.8e-08 Score=106.67 Aligned_cols=147 Identities=14% Similarity=0.005 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCCCHHH
Q 005002 48 SQELKEEGNKLFQKR-DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGE--FPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~G-dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gd--yeeAI~d~~kALeLdP~~~KA 124 (720)
...+..+|..+...| ++.+|+..+++++..+|++. .+|++|+.++.++ +. +.+++..++++|+++|+|..+
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l--~~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKL--GPDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHc--CchhhHHHHHHHHHHHHhCcccHHH
Confidence 446667788888887 57888988899998888888 5899999888887 54 377888888999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh---------hccChhHHhhhcCCCCCCCCcchh
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE---------KGIDIDEKMKEFGLDSSGEAHGAL 195 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e---------ka~a~~ek~~~L~~~~P~~P~~~~ 195 (720)
+..||.++..+|+|++|+.++.++|+++|.|..++.....+...++. .......+.+.+. |.+.+++.
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~---P~N~SaW~ 221 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN---PRNESPWR 221 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC---CCCcCHHH
Confidence 99999999999999999999999999999999999888887765521 1122224566667 88888888
Q ss_pred hHHHHHHH
Q 005002 196 RFRKLVKE 203 (720)
Q Consensus 196 ~l~~i~k~ 203 (720)
-+++++..
T Consensus 222 Yl~~ll~~ 229 (320)
T PLN02789 222 YLRGLFKD 229 (320)
T ss_pred HHHHHHhc
Confidence 88888754
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=2.2e-08 Score=118.31 Aligned_cols=125 Identities=9% Similarity=-0.035 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|....+.|+|++|...+..++.+.|++. .++.+++.++.++ +++++|+..|+++|..+|+++.+++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~----~a~~~~a~~L~~~--~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS----EAFILMLRGVKRQ--QGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHh--ccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 366778899999999999999999999999999999 6999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID 177 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ 177 (720)
.+|.|+..+|+|++|+..|++++..+|++..++..++.+.+.+++...+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999986655544
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=8.1e-09 Score=110.65 Aligned_cols=113 Identities=24% Similarity=0.308 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
++...+.|+.++..|+|.+|+-.|..|++.+|++. .+++.||.+|+.| |.-.-|+.+++++|++.|++.-|...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y----~aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY----QAIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH----HHHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHH
Confidence 56788999999999999999999999999999999 6999999999999 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNN---SSALEVLESVK 166 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n---~~A~~~L~~lk 166 (720)
||.+++.+|.++.|..+|+.+|.-+|++ ..++..|..+.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 9999999999999999999999999965 44444444443
No 62
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=5e-09 Score=90.68 Aligned_cols=83 Identities=27% Similarity=0.405 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDF 140 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryee 140 (720)
+|+|+.|+..|++++...|.++ ...++.++|.||+++ |+|++|+..+++ +..+|.++..++.+|.|+..+|+|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 6899999999999999999753 125777899999998 999999999999 99999999999999999999999999
Q ss_pred HHHHHHHH
Q 005002 141 AFRDVNNV 148 (720)
Q Consensus 141 Al~d~ekA 148 (720)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 63
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.85 E-value=3.5e-08 Score=91.23 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=98.3
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 69 LKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 69 ~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
..|.+++.+.|++. ..+.++|.++... |++.+|+..+++++.++|.++.+++++|.++..+|++++|+..|+++
T Consensus 4 ~~~~~~l~~~p~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQL----EQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhhH----HHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999987 5889999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 149 LSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 149 L~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
+.++|.+...+..++.+....++...+. -.....+.
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999887655443 34555555
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7.9e-09 Score=116.55 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
-.|..++-.|+|+.|+.+|+.||...|++. .+|+.+|+++..- .+..+||..|++||++.|.|+++.|++|.++
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~----~lWNRLGAtLAN~--~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDY----LLWNRLGATLANG--NRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCchH----HHHHHhhHHhcCC--cccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 578999999999999999999999999999 6999999999996 8999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhh
Q 005002 133 KALNRLDFAFRDVNNVLSMEPN----------NSSALEVLESVKQSMI 170 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~----------n~~A~~~L~~lk~~l~ 170 (720)
+.+|.|.+|+.+|-.||.+.+. +..+|..|..+...++
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 9999999999999999999776 1347777776666554
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=2.1e-07 Score=98.32 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=99.1
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHH
Q 005002 50 ELKEEGNKL-FQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---YSKAL 125 (720)
Q Consensus 50 ~lKeeGn~l-fk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~~KAy 125 (720)
...+.+..+ ++.|+|++|+..|...+...|++. ....+++.+|.+|+.. |+|+.|+..|.+++...|+ .+.++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~--g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNK--GKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 446666665 667999999999999999999875 2236899999999997 9999999999999999887 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
+++|.++..+|+++.|+..|++++...|++..+.....++
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999998877666655
No 66
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.81 E-value=1.1e-07 Score=110.40 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|+|++|+..|.+++...|++. .+.+++.+|..+ |++++|+..+.++++.+|+++.+++.+
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~l 776 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-----NAIKLHRALLAS--GNTAEAVKTLEAWLKTHPNDAVLRTAL 776 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3456689999999999999999999999999874 678899999997 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh-ccChhHHhhhcCCCCCCCCcchhhHHHHHHHHhhh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK-GIDIDEKMKEFGLDSSGEAHGALRFRKLVKEKVKK 207 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek-a~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kk 207 (720)
|.+|..+|++++|+..|++++..+|+++.++..+..+....+.. +....++...+. |..|.....++.++...++.
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLA---PNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999988877651 122235555555 77777776777777666655
Q ss_pred hh
Q 005002 208 KK 209 (720)
Q Consensus 208 kK 209 (720)
.+
T Consensus 854 ~~ 855 (899)
T TIGR02917 854 DR 855 (899)
T ss_pred HH
Confidence 44
No 67
>PRK15331 chaperone protein SicA; Provisional
Probab=98.80 E-value=8.5e-08 Score=94.43 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|-.+|+.|+|++|...|+-...++|.++ ..+..+|.|+..+ ++|++|+..|..|..++++++..+|+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----~Y~~GLaa~~Q~~--k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP----DYTMGLAAVCQLK--KQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHcccCCCCccchH
Confidence 3788899999999999999999999999999998 5899999999998 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
|.||+.+|+.+.|+..|..++. .|.+...+..-......+
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence 9999999999999999999998 577766655555554444
No 68
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.79 E-value=8.2e-08 Score=113.07 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 49 QELKEEGNKLFQKRDHEG----AMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 49 ~~lKeeGn~lfk~Gdyee----Al~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
..+...|..++..|++++ |+..|++++.++|++. .++.++|.++... |++++|+..+++++.++|+++.+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~--g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV----RIVTLYADALIRT--GQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHH
Confidence 345678999999999986 8999999999999988 6999999999997 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcC
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~ 184 (720)
++.+|.+|..+|++++|+..|++++..+|++..+...+..+...+++...+.. .......
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998777777777777764443333 4444444
No 69
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.78 E-value=1.9e-07 Score=108.50 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|+|++|+..|.+++..+|.+. .++..+|.+++.. |+|++|+..++++++.+|.+..+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL----YAKLGLAQLALAE--NRFDEARALIDEVLTADPGNVDALL 197 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 356788899999999999999999999999999887 5899999999997 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
.+|.++...|++++|+..|++++.++|++..++..+..+....++..
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE 244 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999988888887766443
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.78 E-value=2.7e-08 Score=104.00 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+.+.|++++|+..|++||+++|++. .++..++.++..+ |+++++...+.......|+++..+..+
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~----~~~~~l~~~li~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDP----DARNALAWLLIDM--GDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H----HHHHHHHHHHCTT--CHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHC--CChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3456677777777888888888888888888777 3667777777665 777777777777766667777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI 176 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~ 176 (720)
|.+|..+|++++|+..|++++..+|+|+..+..+..+....|....++
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888888888888888888888888888888877777776554433
No 71
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=98.77 E-value=2.6e-08 Score=88.28 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=60.8
Q ss_pred cCceEEEeccCCCCHHHHHHHHHhhcCCC----CceeEEeeCCCCCeeeecCchHHHHHHHhhcCCC--ceEEEEE
Q 005002 268 GDDIRWAQLPVNCSIRLVRDIVRDRFPSL----KGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQS--FLRLYIA 337 (720)
Q Consensus 268 g~DiR~~~~~~~~s~~~L~~~v~~kF~~~----~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~--~~rL~v~ 337 (720)
.+++.|+.+..+.++.+|+..|.+||... ..|.|+|.|.|||.|.||||+||..|...++..| .|+|+|.
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~v~ 84 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLHLH 84 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEEEEe
Confidence 56888999877999999999999999655 4799999999999999999999999998875543 4888874
No 72
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1e-07 Score=105.51 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|-.+....+-..|+..|+.|++++|.+. .+|+.+|.+|--| +...=|+-++.+|+++.|.++..+..+
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----RAWYGLGQaYeim--~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----RAWYGLGQAYEIM--KMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH----HHHhhhhHHHHHh--cchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 4566789999999999999999999999999999 6999999999998 888999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
|.||..+++.++|++.|.+|+.+...+..+...|+.++..+++...+
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999755443
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.73 E-value=3.6e-08 Score=80.83 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 91 NMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 91 NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
.+|..+++. |+|++|+..++++++.+|+++.+++.+|.|+..+|++++|+..|++++.++|+|+
T Consensus 2 ~~a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888886 8999999999999999999999999999999999999999999999999998875
No 74
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=6.2e-08 Score=104.03 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
++.....+-+......++|.+++..+++.++-+|..++-+...+--++.||..- +++.+||..|+++|+++|+++.+|
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d--~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED--EQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc--CCHHHHHHHHHHHHhcCchHHHHH
Confidence 556666777888899999999999999999999986643334555677788775 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChhHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDIDEK 179 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ek 179 (720)
.-||.+|+.-..|+.|+.+|++|+.++|+|..++..+.+.++.....+...-.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYK 398 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHH
Confidence 999999999999999999999999999999999999999998776555443333
No 75
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.6e-07 Score=101.76 Aligned_cols=138 Identities=11% Similarity=0.037 Sum_probs=121.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005002 58 LFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG-EFPRAINECNLALEVSSKYSKALLKRAQCYKALN 136 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g-dyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG 136 (720)
+...+++++|+..+.++|.++|.+. ++|.+|+.|+..+ + .+.+++..++++++.+|++..+++.|+.++..+|
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L--~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEAL--DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHc--chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 5567899999999999999999999 6999999999998 6 6899999999999999999999999999999999
Q ss_pred CH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh--ccChhHHhhhcCCCCCCCCcchhhHHHHHHHH
Q 005002 137 RL--DFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK--GIDIDEKMKEFGLDSSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 137 ry--eeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek--a~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~k 204 (720)
+. ++++..+.+++.++|.|..++...+.+...++.. +.....+..+.. |.+.+++...+.++...
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRS 189 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhc
Confidence 84 7889999999999999999999999999988743 334446777777 88888887777766543
No 76
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.73 E-value=3.4e-07 Score=98.91 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----H
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS-----K 123 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~-----K 123 (720)
..+...|..++..|+|++|+..|.+++...|.+. .++.+++.+|.+. |++++|+..+.+++...|.+. .
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE----GALQQLLEIYQQE--KDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHh--chHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3455556666666666666666666666555444 3555555555554 555555555555555554432 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
.++.+|.++...|++++|+..|++++.++|++..++..+..+....+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence 33445555555555555555555555555555555555555544444
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=2.1e-07 Score=116.04 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA- 129 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA- 129 (720)
+...|..++..|++++|+..|++++.++|.+. .++.++|.+|+.. |++++|+..|+++|+++|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~--g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMAR--KDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45679999999999999999999999999988 5899999999997 9999999999999999999887765544
Q ss_pred -----------------------------------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 130 -----------------------------------------QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 130 -----------------------------------------~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
.++...|++++|+..|++++.++|+++.++..+..+...
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445568999999999999999999999999999999988
Q ss_pred hhhhccChh--HHhhhcCCCCCCCCcch
Q 005002 169 MIEKGIDID--EKMKEFGLDSSGEAHGA 194 (720)
Q Consensus 169 l~eka~a~~--ek~~~L~~~~P~~P~~~ 194 (720)
.++...+.. ++...+. |..|...
T Consensus 508 ~G~~~~A~~~l~~al~~~---P~~~~~~ 532 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK---PNDPEQV 532 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC---CCCHHHH
Confidence 875544433 4444555 6555443
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=2e-07 Score=97.16 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..+++.|+|..|+..+++|..+.|++. .+|+-+|.||.++ |+++.|...|.+|+++.|+.+..+.++|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~----~~~~~lgaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW----EAWNLLGAALDQL--GRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh----hhhhHHHHHHHHc--cChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 455599999999999999999999999999999 5999999999998 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
..|+-.|+++.|...+.++...-+.+..+..+|..+...+++..
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 99999999999999999999998999999999999988887544
No 79
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.71 E-value=1.9e-07 Score=116.38 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=118.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---------
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK--------- 123 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K--------- 123 (720)
..|..++..|++++|+..|++++.++|+++ .++.++|.+|+++ |++++|+..++++++++|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~----~a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS----EALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 458999999999999999999999999988 5999999999997 9999999999999999998653
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhh
Q 005002 124 -----ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALR 196 (720)
Q Consensus 124 -----Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~ 196 (720)
.++.+|.++...|++++|+..|++++.++|++..++..++.+....++...+. .++...+. |..+.....
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~a~~~ 424 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD---PGNTNAVRG 424 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHH
Confidence 23456889999999999999999999999999999999999999887554443 35566666 666655555
Q ss_pred HHHHHH
Q 005002 197 FRKLVK 202 (720)
Q Consensus 197 l~~i~k 202 (720)
++.++.
T Consensus 425 L~~l~~ 430 (1157)
T PRK11447 425 LANLYR 430 (1157)
T ss_pred HHHHHH
Confidence 555553
No 80
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.68 E-value=5e-07 Score=86.13 Aligned_cols=110 Identities=27% Similarity=0.317 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS-- 122 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~-- 122 (720)
++....+-.+|..+-..|+.++|++.|.+||.+.|..+ .+|+|||.+|... |+.++|+.+.++||++.-...
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra----SayNNRAQa~RLq--~~~e~ALdDLn~AleLag~~trt 113 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERA----SAYNNRAQALRLQ--GDDEEALDDLNKALELAGDQTRT 113 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch----HhhccHHHHHHHc--CChHHHHHHHHHHHHhcCccchH
Confidence 58888999999999999999999999999999999998 6999999999875 999999999999999975433
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 123 --KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVL 162 (720)
Q Consensus 123 --KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L 162 (720)
.+|..||..|..+|+-+.|..+|+.+-.+- .+-++..|
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG--S~FAr~QL 153 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLG--SKFAREQL 153 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC--CHHHHHHH
Confidence 579999999999999999999999998874 34444443
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-07 Score=106.54 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID---VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d---~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+.+.|..+|..+.|.+|+.+|.+++...+...++ ....++|+|.+|.++ +.|.+||..+++||.+.|.++..|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl--~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL--NKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH--hhHHHHHHHHHHHHHcCCCchhHHH
Confidence 56788999999999999999999999554433221 345799999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
..|.+|..+|+++.|+..|.++|.++|+|..+...|+.+...
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876554
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=5.1e-07 Score=91.54 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCCCH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM------GLGEFPRAINECNLALEVSSKYS 122 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL------~~gdyeeAI~d~~kALeLdP~~~ 122 (720)
..+...|..++..|++++|+..|+++++..|+++. ...+++++|.|++++ ..++++.|+..+++++..+|++.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 35678899999999999999999999999998773 334789999999874 12689999999999999999986
Q ss_pred HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhhhcc
Q 005002 123 KAL-----------------LKRAQCYKALNRLDFAFRDVNNVLSMEPNN---SSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 123 KAy-----------------~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n---~~A~~~L~~lk~~l~eka~ 174 (720)
.++ +.+|.+|...|++.+|+..|++++...|++ ..++..++.+...+++...
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL 221 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence 442 467899999999999999999999997765 5788899999888875543
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.65 E-value=4.7e-07 Score=97.88 Aligned_cols=161 Identities=9% Similarity=-0.014 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|++++|+..|++++...+........++.++|.+|+.. |++++|+..+.++++.+|.+..++..
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~ 146 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA--GLLDRAEELFLQLVDEGDFAEGALQQ 146 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCcchHHHHHH
Confidence 4567788999999999999999999998854333322346788999999997 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSS-----ALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKL 200 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~-----A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i 200 (720)
++.++...|++++|+..+++++..+|.+.. .+..+..+....++...+ ...+..... |..+.....++.+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~ 223 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD---PQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHH
Confidence 999999999999999999999998887633 333455554444433222 234444444 5555566667777
Q ss_pred HHHHhhhhhccch
Q 005002 201 VKEKVKKKKKNGK 213 (720)
Q Consensus 201 ~k~k~kkkK~~k~ 213 (720)
+...++..+..+-
T Consensus 224 ~~~~g~~~~A~~~ 236 (389)
T PRK11788 224 ALAQGDYAAAIEA 236 (389)
T ss_pred HHHCCCHHHHHHH
Confidence 7777766665433
No 84
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.62 E-value=5.9e-07 Score=107.60 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+...|++.+|+..|++++.++|.++ .++.+++.++... |++.+|+..+.++++.+|+++. ++.+
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~l~~~--g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND----DYQRGLILTLADA--GQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 3477888999999999999999999999999988 4788999999887 9999999999999999999999 9999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
|.++...|++++|+..|++++.++|++..++..+..+....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999888887776644
No 85
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.57 E-value=3e-07 Score=76.73 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=55.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 93 AGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 93 Aa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
..+|++. ++|+.|+..+++++.++|+++.+++.+|.||..+|+|.+|+.+|+++++++|++..+......
T Consensus 2 ~~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQ--EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhC--CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3456664 888888888888888888888888888888888888888888888888888888777665544
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.56 E-value=1.4e-06 Score=102.60 Aligned_cols=125 Identities=21% Similarity=0.184 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+..++|.+|..|++++|...+.++|+.+|.++ ..|+-+|.||-+. |+..+++.....|-.++|.+..-|.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~----~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~ 211 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP----IAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch----hhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHH
Confidence 366888999999999999999999999999999999 5999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID 177 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ 177 (720)
++|.-...+|+++.|.-+|.+|++++|.|-........+.+.+|....+..
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 999999999999999999999999999999999999999999987766655
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=1.1e-06 Score=104.13 Aligned_cols=116 Identities=10% Similarity=-0.057 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+....+.++.+++.+++++|+..+++++..+|++. ..++++|.|+.++ |+|++|+..|++++..+|+++.+++
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~----~~~~~~a~~l~~~--g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA----REILLEAKSWDEI--GQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHh--cchHHHHHHHHHHHhcCCCcHHHHH
Confidence 345667899999999999999999999999999999 6999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPN-NSSALEVLESVKQS 168 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~-n~~A~~~L~~lk~~ 168 (720)
.+|.++..+|+.++|...|++|+.+..+ .....+.+..+...
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD 235 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999997644 33334455554443
No 88
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=8.5e-07 Score=99.12 Aligned_cols=68 Identities=25% Similarity=0.226 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS 118 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd 118 (720)
+..+.+.|+.|+..|+|++|+..|++||+++|++.. ...+|+|+|.||.++ |++++|+.++.+||++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~L--Gr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYR--EEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhc
Confidence 448999999999999999999999999999999873 114699999999998 99999999999999983
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.55 E-value=7.7e-07 Score=91.68 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--SKYSKALL 126 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--P~~~KAy~ 126 (720)
..+..++..+-+.|+.+.|-+.|++|+.+.|++. .+++|.|.-++.. |.|++|...|++|+..- |..+..+-
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----dVLNNYG~FLC~q--g~~~eA~q~F~~Al~~P~Y~~~s~t~e 143 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----DVLNNYGAFLCAQ--GRPEEAMQQFERALADPAYGEPSDTLE 143 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc----chhhhhhHHHHhC--CChHHHHHHHHHHHhCCCCCCcchhhh
Confidence 3455677788899999999999999999999999 5999999999986 99999999999999852 34578999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
++|.|.+..|+++.|..+|+++|.++|+++.+...+.+.+..-++...+
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999998888887766655443
No 90
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.54 E-value=1.7e-07 Score=100.78 Aligned_cols=119 Identities=17% Similarity=0.276 Sum_probs=106.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 005002 41 TAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK 120 (720)
Q Consensus 41 ~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~ 120 (720)
+...+.+|...+-.+..++..|.++.|+..|+.||.++|... .+|.+|+.+++++ +....||.+|..||+++|+
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a----~l~~kr~sv~lkl--~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA----ILYAKRASVFLKL--KKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh----hhcccccceeeec--cCCchhhhhhhhhhccCcc
Confidence 444568999999999999999999999999999999999988 6999999999998 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
..+.|-.+|.+...+|++++|-.++..+++++-+ ..+-..|..+.
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~ 225 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVF 225 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhc
Confidence 9999999999999999999999999999998743 33333344443
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4e-07 Score=99.87 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--------VAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--------~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
..+.+++.+|.+++-..+.+.|+.+|+++|.++|+.... .-..+-++|.-.++- |+|..|-+.|..||.+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~--G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN--GNYRKAYECYTEALNI 278 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc--cchhHHHHHHHHhhcC
Confidence 456789999999999999999999999999999986531 234556667777774 9999999999999999
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChhHHhhhc
Q 005002 118 SSKY----SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDIDEKMKEF 183 (720)
Q Consensus 118 dP~~----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ek~~~L 183 (720)
+|++ ++.|++||.++..+|+..+|+.+++.|++|||....++...+.|+..+++-+.++..-.+.+
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9974 67899999999999999999999999999999999999999999999997777776444333
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=1.6e-06 Score=83.68 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK---A 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K---A 124 (720)
+..+...|...++.|+|.+|+..|+......|...- ...+...++.+|++- ++|+.|+..+++-|+++|.+++ +
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 358899999999999999999999999999987542 226788999999996 9999999999999999998864 7
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 125 LLKRAQCYKALNR---------------LDFAFRDVNNVLSMEPNNSSALEV 161 (720)
Q Consensus 125 y~rrA~Ay~~LGr---------------yeeAl~d~ekAL~LdP~n~~A~~~ 161 (720)
+|++|.+++.+.. ...|+.+|+.++..-|++.-+...
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999988 899999999999999998766544
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.51 E-value=3.3e-07 Score=75.12 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS 122 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~ 122 (720)
..|..+++.|+|++|+..|++++...|.+. .++..+|.|++.+ |++++|+..++++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP----EAWYLLGRILYQQ--GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH----HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence 579999999999999999999999999988 5999999999997 999999999999999999875
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.51 E-value=2.8e-06 Score=88.67 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---HH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS---KA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~---KA 124 (720)
+..+...|..++..|+|++|+..|++.+...|..+ ....+..++|.+|+++ ++|..|+..+++.+++.|+++ .+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~--~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 34678899999999999999999999999999875 3445678999999998 999999999999999999764 57
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhhhc
Q 005002 125 LLKRAQCYKALNR------------------LDFAFRDVNNVLSMEPNN---SSALEVLESVKQSMIEKG 173 (720)
Q Consensus 125 y~rrA~Ay~~LGr------------------yeeAl~d~ekAL~LdP~n---~~A~~~L~~lk~~l~eka 173 (720)
+|.+|.|+..+++ ...|+..|+..+...|+. +.+...+..++..+.+..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999877651 257889999999999997 466777777777776543
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.48 E-value=1.9e-06 Score=103.25 Aligned_cols=107 Identities=16% Similarity=0.035 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..+...|++++|+..|++++...|.+. .++.++|.++... |++++|+..+++++.++|+++.+++.+|
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQAR--GWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 456788999999999999999999999999998 5999999999997 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVL 162 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L 162 (720)
.+++.+|++++|...++++++..|+|+.+...-
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999765533
No 96
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.46 E-value=5.9e-07 Score=94.00 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLL--PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~--P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
.....+...+++.++...+.++.... +.++ .+|..+|.++.+. |++++|+..+.+||+++|+++.+...++.
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~a~~~~~~--G~~~~A~~~~~~al~~~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSA----RFWLALAEIYEQL--GDPDKALRDYRKALELDPDDPDARNALAW 188 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-H----HHHHHHHHHHHHC--CHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34445566666666666666655433 2222 4666667777665 67777777777777777777777666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHhhhh
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKVKKK 208 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kkk 208 (720)
++...|+++++...+.......|.|+..+..++.+...+++...+ +-++..... |.+|.....++.++...|+..
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---PDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHT------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc---ccccccccccccccccccccc
Confidence 777677777666666666666666666666666666666643333 234445555 666666666666666655544
Q ss_pred h
Q 005002 209 K 209 (720)
Q Consensus 209 K 209 (720)
.
T Consensus 266 ~ 266 (280)
T PF13429_consen 266 E 266 (280)
T ss_dssp -
T ss_pred c
Confidence 3
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.1e-06 Score=104.11 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS---- 122 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~---- 122 (720)
-+..|.-++-.+|.+++|..|+.+|.+||.++|...+ .....+|.|+.+| ++.+.|+..+.+||+++|.++
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a---D~rIgig~Cf~kl--~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA---DVRIGIGHCFWKL--GMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC---CccchhhhHHHhc--cchhhHHHHHHHHHhcChhhHHHHH
Confidence 3557788889999999999999999999999998875 4667888999998 899999999999999988733
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 005002 123 ----------------------------------------------------------------------KALLKRAQCY 132 (720)
Q Consensus 123 ----------------------------------------------------------------------KAy~rrA~Ay 132 (720)
..+|.+|++|
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3477799999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHh
Q 005002 133 KALNRLDFAFRDVNNVLSMEPNN-SSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKV 205 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~n-~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~ 205 (720)
..+|+|+.|..+|..++..+|++ .-...+|+..+...++.... ..++..... |..+..-.-+|.++....
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~---p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL---PNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---cchHHHHHHHHhHHHhhh
Confidence 99999999999999999999998 66667777777766644333 224444444 566666666777777654
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.45 E-value=4.3e-06 Score=84.58 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---HH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS---KA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~---KA 124 (720)
+..+...|..++..|+|.+|+..|++.+...|... ....+...+|.+|++. ++|..|+..+++.++..|+++ .+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~--~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQ--GDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 56889999999999999999999999999999865 3457888999999997 999999999999999999865 58
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhhh
Q 005002 125 LLKRAQCYKALNR-----------LDFAFRDVNNVLSMEPNN---SSALEVLESVKQSMIEK 172 (720)
Q Consensus 125 y~rrA~Ay~~LGr-----------yeeAl~d~ekAL~LdP~n---~~A~~~L~~lk~~l~ek 172 (720)
+|.+|.|++.+.+ ...|+..|+..+...|++ ..+...+..+...+.+.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999877643 458999999999999997 46667777777777544
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.44 E-value=1.7e-06 Score=94.89 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 89 RSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 89 ~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
+...|..++.. ++|..|+..|++||+++|+++.+|+.+|.||..+|+|++|+.++++++.++|++..++..++.++..
T Consensus 5 l~~~a~~a~~~--~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVD--DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45567777775 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC--hhHHhhhcCCCCCCCCcchhhHHHH
Q 005002 169 MIEKGID--IDEKMKEFGLDSSGEAHGALRFRKL 200 (720)
Q Consensus 169 l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i 200 (720)
+++...+ ..++...+. |..+....-++.+
T Consensus 83 lg~~~eA~~~~~~al~l~---P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA---PGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 9865533 446777777 7776655554444
No 100
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=7.2e-07 Score=100.00 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=108.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCC
Q 005002 41 TAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG-LGEFPRAINECNLALEVSS 119 (720)
Q Consensus 41 ~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~-~gdyeeAI~d~~kALeLdP 119 (720)
-..+.+.++.++++||..|-.+....|+..|.+++...|..+ .+|.|||+++|+-+ .|+...|+.+|..||+++|
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~----~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI----YLLENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh----HHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 344567889999999999999999999999999999999888 69999999999853 4677889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 120 KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 120 ~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.+.||+|++++|+..++++.+|+.+...+....|.+.........+.+.+
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi 492 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDI 492 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccch
Confidence 99999999999999999999999998888888887766555444444433
No 101
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=98.44 E-value=8.3e-07 Score=77.61 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=65.9
Q ss_pred ceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCC-CeeeecCchHHHHHHHhhcCCCceEEEEEe
Q 005002 261 KTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEG-DLVTITTTDELRFVEMLFNSQSFLRLYIAE 338 (720)
Q Consensus 261 ~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedG-DlVtitsd~dl~~A~~~~~~~~~~rL~v~e 338 (720)
-.|||.|.. +..|.+|..++|.+|+++|.+|+.- ...+.+.|||+++ ++|.+ |++||..|.+++ ..|-++|-+..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~aws~~-~~~~lTLwC~~ 79 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDVWSQA-KDGCLTLWCTL 79 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHHHHhh-cCCeEEEEEec
Confidence 469999987 8899999999999999999999953 4669999999985 89999 999999999997 67888887753
No 102
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4e-06 Score=89.25 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM-GLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL-~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
++.+--.|..|+..|++..|...|.+|+++.|+++. ++..+|.+++.. +...-.++...+++||.+||+++.+++
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~----~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE----ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 446678899999999999999999999999999994 777777776654 345677899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
.+|..++..|+|.+|+..++..|.+.|.+..-+..+.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999887766666655443
No 103
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.41 E-value=7.5e-07 Score=73.29 Aligned_cols=63 Identities=27% Similarity=0.374 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
|+|++|+..+++++..+|++..+++.+|.||...|++++|...+.+++..+|+++.++..+..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 788888888888888888888888888888888888888888888888888887777666554
No 104
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=93.26 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
+.-+-+-|.-+|+- ++|.+|+..|++||+++|.++-.|.+||.+|..||.|+.|+++++.||.+||....++-.|+++
T Consensus 81 AE~LK~eGN~~m~~--~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 81 AESLKNEGNKLMKN--KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34445566667775 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccChh--HHhhhcCCCCCCCCcc
Q 005002 166 KQSMIEKGIDID--EKMKEFGLDSSGEAHG 193 (720)
Q Consensus 166 k~~l~eka~a~~--ek~~~L~~~~P~~P~~ 193 (720)
+..+++...+.. .++..+. |..++.
T Consensus 159 ~~~~gk~~~A~~aykKaLeld---P~Ne~~ 185 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELD---PDNESY 185 (304)
T ss_pred HHccCcHHHHHHHHHhhhccC---CCcHHH
Confidence 999986655544 6677777 776643
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.40 E-value=1.9e-06 Score=71.87 Aligned_cols=70 Identities=31% Similarity=0.400 Sum_probs=64.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
.+.+++.++|+.|+..+++++.++|.++ .+|..+|.||+++ |+|.+|+.+++++++.+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----ELWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999988 6999999999998 99999999999999999999988776654
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.39 E-value=3.5e-06 Score=68.39 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+++++|.+++.. |++.+|+..+.++++..|.+..+++.+|.++...++++.|+..|++++.+.|.+..++..+..+..
T Consensus 2 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL--GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578999999997 999999999999999999999999999999999999999999999999999999988888888887
Q ss_pred Hhhhh
Q 005002 168 SMIEK 172 (720)
Q Consensus 168 ~l~ek 172 (720)
.+++.
T Consensus 80 ~~~~~ 84 (100)
T cd00189 80 KLGKY 84 (100)
T ss_pred HHHhH
Confidence 77643
No 107
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=1e-05 Score=85.20 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~ 126 (720)
.+++.+-.+++.|+|.+|...|..-|...|+.. -...+++-+|.|++.+ |+|..|...|..+++-.|++ +.+++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~q--g~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQ--GDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhc--ccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 488999999999999999999999999999865 2346899999999998 99999999999999998876 46799
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
.+|.|...+|+.++|...|+.+++--|+...+...-..+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999887665554
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.35 E-value=3e-06 Score=82.41 Aligned_cols=112 Identities=13% Similarity=0.016 Sum_probs=95.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQC 131 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~A 131 (720)
.+.+|-..+|..+...+...+...+... .+.+|+++|.++..+ ++|++|+..|.+|+.+.|+. +.+++++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 4566777778888888866655554433 468999999999997 99999999999999997763 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|..+|++++|+..|++++.++|.+..++..+..+...++
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998888554
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.34 E-value=6.7e-06 Score=99.21 Aligned_cols=118 Identities=13% Similarity=0.026 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+....+.+...++.|+|..|+..|.++++.+|.+++ .++ .++.++..+ |++++|+..|++++.-+|.+..++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~---av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG---QVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh---hHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 346788999999999999999999999999999863 233 777888887 99999999999999444555666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+|.+|..+|+|+.|+..|++++.++|+|+.++..+..+....++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 68899999999999999999999999999999877666665543
No 110
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.2e-06 Score=94.79 Aligned_cols=125 Identities=30% Similarity=0.345 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C------------cchHHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK---N------------HIDVAYLRSNMAGCYMQMGLGEFPRAIN 109 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~---~------------~~d~a~l~~NrAa~y~kL~~gdyeeAI~ 109 (720)
++++...++.|+..|+.++|..|...|.+++..... . ...+..++.|.+.|-+++ +.|..|+-
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~--~~~~~a~~ 296 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKV--KGRGGARF 296 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccc--cCCCccee
Confidence 488889999999999999999999999999976541 1 112356788999999998 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 110 ECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 110 d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.+..+++.+++..++||+++.++..+.++++|++++..+....|++......+..+++.+..
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999998888888776653
No 111
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=1.4e-06 Score=89.12 Aligned_cols=114 Identities=21% Similarity=0.136 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
.+|.-+.++|+.+-..|-..-|.-.|++++.+.|+.+ .+++.+|..+..- |+|+.|.+.++..+++||.+--++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a--~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhc--ccchHHHHHhhhHhccCCcchHHH
Confidence 5788899999999999999999999999999999998 4888899888875 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
.+||.+++--|+|..|.+++....+-||+|+---..|=..
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999997543333333
No 112
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.31 E-value=1.6e-06 Score=71.36 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=60.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 58 LFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
+++.|+|++|+..|++++...|++. .++..+|.||++. |++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP----EARLLLAQCYLKQ--GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHT--T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5789999999999999999999998 5999999999998 99999999999999999998887776664
No 113
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.31 E-value=1.9e-06 Score=96.33 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=64.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 78 LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA---LLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 78 ~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA---y~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+|+++ ..|+|+|.+|+++ |+|++|+..|++||+++|++..+ ||++|.||..+|++++|+.+|++|+.+
T Consensus 71 dP~~a----~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTA----EDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666 6999999999998 99999999999999999999965 999999999999999999999999998
No 114
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=98.30 E-value=3.1e-06 Score=76.89 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=63.1
Q ss_pred eeeee-ecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEee--CCCCC-eeeecCchHHHHHHHhhc----CCCceE
Q 005002 262 TVKLV-FGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYK--DQEGD-LVTITTTDELRFVEMLFN----SQSFLR 333 (720)
Q Consensus 262 ~~K~~-~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYk--DedGD-lVtitsd~dl~~A~~~~~----~~~~~r 333 (720)
.-++. -|+|+|.+.|+.++||.+|+.++...|....++.|||. ++|-| ||+|+||+||..-++... ....+|
T Consensus 14 dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~~~~~~rir 93 (97)
T cd06410 14 DGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRLSGGSARLR 93 (97)
T ss_pred CCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHHhhccccCCCceEE
Confidence 34553 48899999999999999999999999986666999998 89989 999999999998887765 444566
Q ss_pred EEE
Q 005002 334 LYI 336 (720)
Q Consensus 334 L~v 336 (720)
+|+
T Consensus 94 vfl 96 (97)
T cd06410 94 VFL 96 (97)
T ss_pred EEE
Confidence 664
No 115
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.30 E-value=4.2e-06 Score=97.45 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
.-+...|..+...++-++|..+..+|-.++|..+ ..|+-+|.++... |.+.+|.+.|..|+.+||+++....-+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~----~~~~~~G~~~~~~--~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA----SVYYLRGLLLEVK--GQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH----HHHHHhhHHHHHH--HhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3444555566666667777778888888877776 5777788887775 788888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcC
Q 005002 129 AQCYKALNRLDFAFR--DVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 129 A~Ay~~LGryeeAl~--d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~ 184 (720)
|.+|...|+...|.. .+..++++||.|..+|..++.+.+..|+...+.+ .-+..+.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 888888887777777 7888888888888888888888887775544333 4455565
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=8.4e-06 Score=77.73 Aligned_cols=122 Identities=19% Similarity=0.144 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---H
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---S 122 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~ 122 (720)
..+..........+..+++..+...+...+.-.|+.+ -...++..+|.+++.. |+|++|+..++.++...|+. .
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~--g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQ--GDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCHHHHH
Confidence 3445555555555566666666666666666665552 1124455556666654 66666666666666655443 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.+.+++|.+++..|+|++|+..++.+ .-.+-.+.+...++.+....++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 45666666666666666666666441 2222334555555555555553
No 117
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=2e-05 Score=74.19 Aligned_cols=99 Identities=19% Similarity=0.076 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---YSKAL 125 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~~KAy 125 (720)
..+++.|..+-..|+.++|+..|++|+....... .+..++.++|.+|..+ |++++|+..++.++.-.|+ +....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~L--G~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNL--GRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 3567889999999999999999999999766544 4567999999999998 9999999999999999888 88888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
..++.++..+|++++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999988875
No 118
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=2.2e-06 Score=72.66 Aligned_cols=66 Identities=23% Similarity=0.414 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 84 DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-------SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 84 d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-------P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+.+.++.|+|.+|..+ |+|++|+..+++|+++. |....+++++|.||..+|++++|+..+++++++
T Consensus 3 ~~a~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYREL--GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777778777776 77888888877777552 123556777888888888888888888877765
No 119
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=2.4e-06 Score=94.43 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+.+.||..|..|+|++|+..|.+||.-+.... .+++|.|..+-.+ |+.++|+.+|-+.-.+--+++..++.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~--~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEAL--GNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHh--cCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45778899999999999999999999998776666 5889999999987 99999999988876666678999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
++.+|+.+.+...|++.|..+..+-|+++.++..|+.++..-+++..+
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 999999999999999999999999999999999999988877665443
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.24 E-value=1.5e-05 Score=78.11 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEV 161 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~ 161 (720)
.+.+++++|.+|... |++++|+..|.+++++.|+. ..+++.+|.++..+|++++|+..|.+++.++|++..++..
T Consensus 34 ~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 467899999999997 99999999999999988764 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 005002 162 LESVKQSMIE 171 (720)
Q Consensus 162 L~~lk~~l~e 171 (720)
++.+...+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 9888877654
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=1.5e-05 Score=71.06 Aligned_cols=85 Identities=20% Similarity=0.140 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN---SSALE 160 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n---~~A~~ 160 (720)
..++++|..++.. |+|++|+..|.+++..+|++ ..+++.+|.++...|+++.|+..|+.++..+|++ ..++.
T Consensus 3 ~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4778999999997 99999999999999999976 5799999999999999999999999999999986 56788
Q ss_pred HHHHHHHHhhhhc
Q 005002 161 VLESVKQSMIEKG 173 (720)
Q Consensus 161 ~L~~lk~~l~eka 173 (720)
.++.+...+++..
T Consensus 81 ~~~~~~~~~~~~~ 93 (119)
T TIGR02795 81 KLGMSLQELGDKE 93 (119)
T ss_pred HHHHHHHHhCChH
Confidence 8888887776433
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=2.1e-05 Score=88.17 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
....+-.+...+..|++++|...++..+...|+|+ .++.-++.+++.. +++++|++.+.+++.++|+.+-..++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~--nk~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEA--NKAKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCccHHHHH
Confidence 44667788889999999999999999999999999 7888999999997 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID 177 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ 177 (720)
+|.+|...|++.+|+..+++.+.-+|+|+..|..|.+.+..++....+..
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 99999999999999999999999999999999999999999986554443
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=8.9e-06 Score=79.84 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
...+.+|.-++.. |++++|...|.-+..++|.++..|+++|.|+..+|+|.+|+..|.+++.++|+|+.+...++.|+
T Consensus 36 ~~lY~~A~~ly~~--G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEV--KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566678888886 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcc
Q 005002 167 QSMIEKGI 174 (720)
Q Consensus 167 ~~l~eka~ 174 (720)
..+++...
T Consensus 114 L~lG~~~~ 121 (157)
T PRK15363 114 LACDNVCY 121 (157)
T ss_pred HHcCCHHH
Confidence 99985543
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.4e-05 Score=95.12 Aligned_cols=446 Identities=18% Similarity=0.151 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY-SKALLKR 128 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~-~KAy~rr 128 (720)
.+.-.++-+|-.|+|..+...+..|+...-..+ ..+..++++|.+|..+ |+|++|..+|..++..+|++ .-+++.+
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~--Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQ--GDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccCCCCccccccch
Confidence 455677888888888888888888887653333 3566799999999997 99999999999999999988 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh------hhccChhHHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI------EKGIDIDEKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~------eka~a~~ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
|..|+..|+++.|...|++++...|++..+...|+.++...+ +++..+-.+....- |++...+..++.++.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLE 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998774 33333334444444 677777777777765
Q ss_pred HHhhhhh------ccch-hhhhhhhhhhhhhccc-------CcchhhhHhhhhhhhhhhhhhhhh--ccc-ccccceeee
Q 005002 203 EKVKKKK------KNGK-EEEKKAEDEVVLEENV-------SDVKDKEVVTKIVEEEKEVTDVVN--EEE-KVVTKTVKL 265 (720)
Q Consensus 203 ~k~kkkK------~~k~-~~k~k~~~~~~~~~~~-------~~s~~kk~~~~~~~~q~~~~~~~~--~~~-~~~~~~~K~ 265 (720)
.....+- ...- ..+.+. -+....++. +.-. +..+-.+ +......++ .+. ..+..|++-
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~--~A~~~f~--~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIE--KALEHFK--SALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChH--HHHHHHH--HHhhhhhhhcCccccccchhHHHH
Confidence 5322110 0000 000000 000011000 0000 0000000 000000000 010 011111111
Q ss_pred eecCceEEEeccCCCCH-HHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEEEEeeCCCCC
Q 005002 266 VFGDDIRWAQLPVNCSI-RLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLYIAEVSPDQE 344 (720)
Q Consensus 266 ~~g~DiR~~~~~~~~s~-~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~v~ev~p~~e 344 (720)
+.+ |+-.-+.+++. .++..-|.+..|+ |. |..|+++... ...+.+...+.+++-
T Consensus 501 Nla---rl~E~l~~~~~A~e~Yk~Ilkehp~-------YI-----------d~ylRl~~ma-~~k~~~~ea~~~lk~--- 555 (1018)
T KOG2002|consen 501 NLA---RLLEELHDTEVAEEMYKSILKEHPG-------YI-----------DAYLRLGCMA-RDKNNLYEASLLLKD--- 555 (1018)
T ss_pred HHH---HHHHhhhhhhHHHHHHHHHHHHCch-------hH-----------HHHHHhhHHH-HhccCcHHHHHHHHH---
Confidence 100 00000111111 1222333444442 21 2344443111 111111111111100
Q ss_pred CcccCCCccccccccccCCccccccCccccccccCCCCcchhhHHH---HHHHHHhhhhcCCCccccchHHHHHHHHHHH
Q 005002 345 PAYDGIGSQDEKHKLEEEPRNIVENGKVGKVVEIEPQPTCIEDWII---EFAQLFKNHVGFDSDSFLNLHELGMKLYSEA 421 (720)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~w~~---~fa~lf~~~~g~~~d~~l~l~~~g~~~~~ea 421 (720)
-+.. .++.++--+ -.++-.---++|.. -|-..|++..+. +|.| -|-.||= .|-++
T Consensus 556 -------------~l~~-d~~np~ars-----l~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~Y-sliaLGN-~~~~~ 613 (1018)
T KOG2002|consen 556 -------------ALNI-DSSNPNARS-----LLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAY-SLIALGN-VYIQA 613 (1018)
T ss_pred -------------HHhc-ccCCcHHHH-----HHHHHHHhhhhhcccccHHHHHHhhhccC-Cchh-HHHHhhH-HHHHH
Confidence 0000 000000000 00000001122321 366677777777 5666 3556776 77888
Q ss_pred HhhhcC-hHHHHHHHHHHHHHHHHHHHH------HHhhhhhHHHHhhhhccCCCCCcchhhHHHHHHHHHH---------
Q 005002 422 MEDTVT-SEEAQELFEMAADNFQEMAAL------AVFNWGNIHLSRARKRIFFPEDGLRESILAQVTVAHE--------- 485 (720)
Q Consensus 422 le~~v~-~~~a~~lf~~a~~kfqe~aa~------a~fnwgnvhm~~ark~~~~~~~~~~e~~~~~~~~~~~--------- 485 (720)
|.--+. ++.++...++|.+-|+-|--. |--+-|-|.....|-.. .-.|+.||+++..
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~-------A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE-------ARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH-------HHHHHHHHHHHHhhCCceeeeH
Confidence 875443 367888999999999876432 34444555543332211 2246778887766
Q ss_pred ----HHHHHHHHHHHHHHHHHcc--CchhhHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHH
Q 005002 486 ----WAKKEYAMAGMRYQEALKI--KQDFYEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKG 559 (720)
Q Consensus 486 ----~~~~~y~~a~~kye~a~~i--kpdf~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~ 559 (720)
..+..|..|.+.||-.++- +-+-++.+.=||-..|++++|-=.-.-+-++=... .+++.-+||.|..-.+-|
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~--p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA--PSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CccchHHhHHHHHHHHHH
Confidence 3468999999999999973 44556888889998998888532211111111111 235667999999999988
Q ss_pred HHh
Q 005002 560 VQM 562 (720)
Q Consensus 560 ~~~ 562 (720)
+.+
T Consensus 765 ~s~ 767 (1018)
T KOG2002|consen 765 ESI 767 (1018)
T ss_pred HHH
Confidence 885
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=1.1e-05 Score=91.74 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----------
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS---------- 122 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~---------- 122 (720)
.+|..+++.|+..+|+..|+.|+.-+|.+. .+|..+|.++... ++=..||..+.+||+++|+|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~ha----eAW~~LG~~qaEN--E~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHA----EAWQKLGITQAEN--ENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHH----HHHHHhhhHhhhc--cchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 356666666666666666666666666655 3666666665554 555556666666666665543
Q ss_pred -------------------------------------------------------------------HHHHHHHHHHHHc
Q 005002 123 -------------------------------------------------------------------KALLKRAQCYKAL 135 (720)
Q Consensus 123 -------------------------------------------------------------------KAy~rrA~Ay~~L 135 (720)
+.+..+|..|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 3444489999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--hhccChhHHhhhcCCCCCCCCcchhhHHHHHHHHhhhhh
Q 005002 136 NRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI--EKGIDIDEKMKEFGLDSSGEAHGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 136 GryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~--eka~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kkkK 209 (720)
|+|+.|+.+|+.||..+|+|...|..|+-.+.--. ..++..-.++..|. |...-+...++...-..|-.+.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---P~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---PGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC---CCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999999999999999999888765332 22333347778888 8877777778777666666554
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.19 E-value=8.7e-06 Score=68.98 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL---LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L---~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
..+..+.+.|..++..|+|++|+..|++|+.+ .++.+++.+.++.|+|.||..+ |++++|+..+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL--GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999976 3334445789999999999998 9999999999999986
No 127
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.17 E-value=2.8e-05 Score=89.67 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHh-
Q 005002 48 SQELKEEGNKLFQKRD---HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG------LGEFPRAINECNLALEV- 117 (720)
Q Consensus 48 A~~lKeeGn~lfk~Gd---yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~------~gdyeeAI~d~~kALeL- 117 (720)
|-.+.-+|..++..++ +..|+.+|++|++++|+++ .+|.-++.||.... ..+...+.....+++.+
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a----~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT----YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 5577788888887666 8899999999999999998 58888888876541 01234556666676664
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc--cChhHHhhhcCCCCCCCCc
Q 005002 118 -SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG--IDIDEKMKEFGLDSSGEAH 192 (720)
Q Consensus 118 -dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka--~a~~ek~~~L~~~~P~~P~ 192 (720)
+|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++.++...|+.. .....++..+. |..|.
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~---P~~pt 488 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR---PGENT 488 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCch
Confidence 777889999999999999999999999999999999 5789999999998887544 44447778888 77664
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.17 E-value=2.1e-05 Score=84.10 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY----SKAL 125 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~----~KAy 125 (720)
.+...|..+...|+|++|+..|++++.+.|++. .++..+|.+|+.. |++++|+..+.+++...|.. ...+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~----~~~~~la~i~~~~--g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDA----WAVHAVAHVLEMQ--GRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHc--CCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 445677788888888888888888888888887 5788888888886 88888888888888887643 2356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
+.+|.++..+|++++|+..|++++...|
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 6788888888888888888888877666
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=2.3e-05 Score=82.10 Aligned_cols=146 Identities=15% Similarity=0.094 Sum_probs=115.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
....+.++..|+-+.++....+++...|.+. .++.-.|...+.. |+|..|+..+.+|.+++|++.++|.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~----~ll~~~gk~~~~~--g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDR----ELLAAQGKNQIRN--GNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccH----HHHHHHHHHHHHh--cchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 3467777888888888888888777777776 3565578888886 999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHHHHHHHHhh
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFRKLVKEKVK 206 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~~i~k~k~k 206 (720)
|.++|++++|...|.+++++.|+++.+..++...+..-+++..+.. ....-.+ +.++....++.-+....++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999888776655444 2222233 3344445555544444333
No 130
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.14 E-value=1.1e-05 Score=80.62 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG--------LGEFPRAINECNLALEVSSKYSKALLKRAQCYKAL 135 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~--------~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~L 135 (720)
|+.|.+.|+.+...+|.++. .++|=|.+++.+. ..-+++||.-++.||.++|+...|++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~nP~Dad----nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD----NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH----HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 78899999999999999984 6667676665551 13578899999999999999999999999999887
Q ss_pred CC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 136 NR-----------LDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 136 Gr-----------yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
+. |+.|..+|++|...+|+|..++..|....+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 64 8899999999999999999999999888653
No 131
>PRK11906 transcriptional regulator; Provisional
Probab=98.13 E-value=3.2e-05 Score=86.84 Aligned_cols=130 Identities=10% Similarity=-0.046 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCcchHHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHh
Q 005002 51 LKEEGNKLFQKRD---HEGAMLKYEKAL---KLLPKNHIDVAYLRSNMAGCYMQM-------GLGEFPRAINECNLALEV 117 (720)
Q Consensus 51 lKeeGn~lfk~Gd---yeeAl~~Y~kAL---~L~P~~~~d~a~l~~NrAa~y~kL-------~~gdyeeAI~d~~kALeL 117 (720)
+.-+|...+.++. ...|+..|.+|+ .++|... .+|.-+|.||+.. .+.+..+|+..+.+|+++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a----~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT----ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 3556666655544 467999999999 9999988 5999999998876 144667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 118 SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 118 dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
+|.++.|++.+|.++...++++.|+..|++|+.++|+.+.++...+.+.-..++...+. -++..++.
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999888777544433 35666666
No 132
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=98.13 E-value=4.1e-06 Score=72.77 Aligned_cols=64 Identities=20% Similarity=0.429 Sum_probs=58.0
Q ss_pred eeeeeecCceEEEec-cCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHh
Q 005002 262 TVKLVFGDDIRWAQL-PVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEML 325 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~-~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~ 325 (720)
.||..-|+|+-|.+- |..++|.+|++.|.++.|....-..-|.|||||.||+-||+||+--+++
T Consensus 4 RIk~p~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRITVRSDeEm~AMlsy 68 (91)
T cd06395 4 RIKIPNGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSY 68 (91)
T ss_pred EEeCCCCCcccccccCcccccHHHHHHHHHHhcccccccceeeccccCCeeEecchHHHHHHHHH
Confidence 378889999999886 6779999999999999999999999999999999999999999866654
No 133
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.13 E-value=4.1e-05 Score=81.95 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HhCCCCHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL----EVSSKYSKAL 125 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL----eLdP~~~KAy 125 (720)
....+|..++..|++++|+..|.+++...|.+. .++.. +.++..+ +++..+...+.+++ ..+|....++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----LALKL-HLGAFGL--GDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHH-hHHHHHh--cccccCchhHHHHHhccCcCCCCcHHHH
Confidence 455689999999999999999999999999987 34444 5555554 44444444444444 5667778888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
..+|.++..+|++++|+..+++++.++|++..+...+..+....++...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999999999999999999999999999998877754433
No 134
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.12 E-value=1.4e-05 Score=94.48 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=55.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS-KYSKALLKRAQCYK 133 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP-~~~KAy~rrA~Ay~ 133 (720)
|-...+.+...+++.++-.--...|.+. ..+|.+++.+|+.. |+|..|+..+..++...+ .+...|+++|+||.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~---~dL~~d~a~al~~~--~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDD---VDLYLDLADALTNI--GKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhh---HHHHHHHHHHHHhc--ccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 3334444444444444433222222222 24555555555554 555555555555555444 23445555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 134 ALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 134 ~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.+|.|++|+..|+++|.++|+|.+++-.|..++..++.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 55555555555555555555555555555555555543
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=4.3e-05 Score=85.74 Aligned_cols=113 Identities=21% Similarity=0.180 Sum_probs=105.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
--.|..++..+++.+|++.|.+++.++|... .+..|+|.+|+++ |++.+||...+..+.-+|+++..|..+|++
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----~l~~~~a~all~~--g~~~eai~~L~~~~~~~p~dp~~w~~LAqa 417 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSP----LLQLNLAQALLKG--GKPQEAIRILNRYLFNDPEDPNGWDLLAQA 417 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHhc--CChHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 3568889999999999999999999999987 6999999999998 999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|..+|+-.+|...+-+.+.+.-+-..+...+.+.++.++
T Consensus 418 y~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 418 YAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888888888888877663
No 136
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.2e-05 Score=89.12 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=99.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-------SKYSKALL 126 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-------P~~~KAy~ 126 (720)
.|..+.+.+++.-|-.+|..|+.+.|.++ .++.-+|.+.++. +.|.+|+..+..+|..- +.+...+.
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dp----lv~~Elgvvay~~--~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDP----LVLHELGVVAYTY--EEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcc----hhhhhhhheeehH--hhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 45555666666666666666666666666 4666666666654 67777777777776321 12445688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
++|-++..+++|++|+..|+++|.+.|.+..++..++-+...++....+ .-.++..+. |.+.....-|+..+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~---p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK---PDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC---CccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999844444 446666666 76655555555444
No 137
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.09 E-value=4.6e-05 Score=87.41 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK----NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--- 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~----~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--- 118 (720)
..|..+.+.|..|++.|+|++|..+|.+|+++.-. ++++.+..+++.++++..+ ++|++|+..+.+++++-
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~--~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM--NEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999987654 4556789999999999998 99999999999998762
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhhhccChh--HHh---
Q 005002 119 -----SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSME--------PNNSSALEVLESVKQSMIEKGIDID--EKM--- 180 (720)
Q Consensus 119 -----P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld--------P~n~~A~~~L~~lk~~l~eka~a~~--ek~--- 180 (720)
|.-++.+.++|.+|+.+|+|++|...|++|+.+. +........++..+..+..+..+.. ...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2346889999999999999999999999999864 2334455666666655543332211 111
Q ss_pred -hhcCCCCCCCCcchhhHHHHHHHHhhhhhccchh
Q 005002 181 -KEFGLDSSGEAHGALRFRKLVKEKVKKKKKNGKE 214 (720)
Q Consensus 181 -~~L~~~~P~~P~~~~~l~~i~k~k~kkkK~~k~~ 214 (720)
+......|....+..+|+..|...|+..+.-+-.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3344334555566778899999988876644333
No 138
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.00 E-value=7.7e-05 Score=90.26 Aligned_cols=100 Identities=9% Similarity=0.008 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
.....+...|++++|+.++++++ +|.+.. ...+..+|.+|..+ |+|++|+..|+++++.+|+++.+++.++.+|
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~--~~~llalA~ly~~~--gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y 146 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS--SRGLASAARAYRNE--KRWDQALALWQSSLKKDPTNPDLISGMIMTQ 146 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44445555677777777777777 444432 12333335566665 6777777777777777777777777667777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 133 KALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
...+++++|+..++++...+|.+...
T Consensus 147 ~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 147 ADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred hhcCCHHHHHHHHHHhcccCcchHHH
Confidence 77777777777777777777765554
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.99 E-value=5.3e-05 Score=86.87 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLP----KNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--- 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P----~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--- 118 (720)
..+..++..|+.|...++|.+|+..|.+|+.+.- .+++..+.++.|+|..|.+. |+|.+|..+|++|+++-
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHh
Confidence 3455667899999999999999999999998765 55667899999999999997 99999999999999873
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHhhhhccChh
Q 005002 119 -----SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSME-----PNN---SSALEVLESVKQSMIEKGIDID 177 (720)
Q Consensus 119 -----P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld-----P~n---~~A~~~L~~lk~~l~eka~a~~ 177 (720)
|.-...+...+..+..++++++|+..|++++++- +.| +....+|+.++..+++...+..
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 2334678889999999999999999999999862 333 5677899999999986655443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00027 Score=67.37 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
.......|..++..|+|++|+..|++++...|+.. ....+..++|.+++.. |+|++|+..++. +.-.+-.+.++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l~~~a~l~LA~~~~~~--~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-LKPLARLRLARILLQQ--GQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHc--CCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 45566799999999999999999999999775542 4557889999999997 999999999866 3444456778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVL 149 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL 149 (720)
+|.+|...|++++|+..|++||
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999885
No 141
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.96 E-value=0.00024 Score=79.20 Aligned_cols=121 Identities=20% Similarity=0.105 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-HH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS-KA 124 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~-KA 124 (720)
+++.....+|...+..|+|..|.....++.+..|+.. ..+.-.|.++.+. |+++.|..++.++++..|++. .+
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHH
Confidence 5788888999999999999999999999999988755 4666678888886 999999999999999999885 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
...++..+...|+++.|+..+++.+...|+|+.++..+..++...++.
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 666799999999999999999999999999999999999999877654
No 142
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.95 E-value=0.00012 Score=85.64 Aligned_cols=107 Identities=20% Similarity=0.093 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCCCCH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAIN--ECNLALEVSSKYS 122 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~--d~~kALeLdP~~~ 122 (720)
..-+..++..|..+..+|++.+|...|..|+.++|++.+ +...+|.|+++. |+-.-|.. ....|++++|.++
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~----s~~Ala~~lle~--G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP----SMTALAELLLEL--GSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHh--CCcchHHHHHHHHHHHhhCCCCH
Confidence 345667889999999999999999999999999999995 889999999998 55555555 9999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
++||.+|.++..+|+.+.|..+|.-|++|++.+|.
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999988763
No 143
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.91 E-value=0.00012 Score=81.41 Aligned_cols=124 Identities=9% Similarity=-0.099 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--HH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS--KA 124 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~--KA 124 (720)
........|..+...|++++|+..++++++..|++.... ...-+...++. .++...++..++++++.+|+++ ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~l~--~~~~~~~~~~~e~~lk~~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPRLK--PEDNEKLEKLIEKQAKNVDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhhcC--CCChHHHHHHHHHHHHhCCCChhHHH
Confidence 345666788899999999999999999999999987311 01222222333 4889999999999999999999 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 125 LLKRAQCYKALNRLDFAFRDVN--NVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~e--kAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
+..+|.+++.+|++++|..+|+ .+++.+|++..+. .++.+...+++...+
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A 389 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH
Confidence 8899999999999999999999 6888899887755 888888888754433
No 144
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.00022 Score=76.95 Aligned_cols=121 Identities=20% Similarity=0.148 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
...-+.|-+.++|++||..-++...+.+.... +++.+|+-+|..++.- .+.+.|+....+|++.+|+.+.|-..+|.
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~--~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS--SDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 33444555566666666666666666665432 5688999999998885 89999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhhhcc
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNN-SSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n-~~A~~~L~~lk~~l~eka~ 174 (720)
++...|+|+.|++.++++++-||+. +.+...|..++..+++...
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999986 6788888888888875543
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.84 E-value=0.00019 Score=86.92 Aligned_cols=113 Identities=14% Similarity=-0.011 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH------
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS------ 122 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~------ 122 (720)
..+-...+.+...+++++|+.....++...|+.. .+|+.+|..|.+. +++..+.-. .++.+-+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~--~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSR--RPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhh--cchhhhhhh--hhhhhcccccchhHHH
Confidence 3677778888899999999999999999999988 4888888888886 666666554 5555555444
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 123 -------------KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 123 -------------KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.||+.+|.||..+|++++|...|+++|.++|+|+.+..+++-.+...
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999888877655
No 146
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=97.83 E-value=6.1e-05 Score=66.60 Aligned_cols=56 Identities=18% Similarity=0.375 Sum_probs=47.0
Q ss_pred ceEEEec----cCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhh
Q 005002 270 DIRWAQL----PVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLF 326 (720)
Q Consensus 270 DiR~~~~----~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~ 326 (720)
+||-|.| ....+|.+|+..|++.|+ -..+.+-|+|.|||||-|-||+|+.+-..-+
T Consensus 14 ~~rdi~vee~l~~~P~~kdLl~lmr~~f~-~~dIaLNYrD~EGDLIRllddeDv~LMV~~~ 73 (92)
T cd06399 14 TIRDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLIRLLSDEDVALMVRQS 73 (92)
T ss_pred cccceEeecccccCccHHHHHHHHHHHhc-hhheeeeeecCCCCEEEEcchhhHHHHHHHH
Confidence 5565654 455699999999999997 5589999999999999999999997766554
No 147
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.82 E-value=0.00054 Score=76.22 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCY-MQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y-~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
+++.....+|...+..|||..|.....++-...+ ++ .+++.++... .+. |+++.|..++.+|.+.+|++.-+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p----~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~~~~~~~~ 154 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QP----VVNYLLAAEAAQQR--GDEARANQHLERAAELADNDQLP 154 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-ch----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCcchHH
Confidence 6788888999999999999999966666554322 23 3444454444 665 99999999999999999998644
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 125 -LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 125 -y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
....+..+...|+++.|+..+++++..+|+|+.+...+..++...++
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 45669999999999999999999999999999999999999887754
No 148
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=5.8e-05 Score=83.78 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+..|.|.+-+. .|+|++|.+.|..||.-+.....|+|+.|..+..+|++++|+.+|-+...+--+|...+..+..++.
T Consensus 492 a~~nkgn~~f~--ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 492 ALTNKGNIAFA--NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HhhcCCceeee--cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455544333 4899999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHhhh
Q 005002 168 SMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKVKK 207 (720)
Q Consensus 168 ~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kk 207 (720)
.++....+ +-...-.+- |.+|...+.++.++-+.|.|
T Consensus 570 ~led~aqaie~~~q~~sli---p~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLI---PNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred HhhCHHHHHHHHHHhcccC---CCCHHHHHHHHHHhhcccch
Confidence 99855433 334444455 78888888888888776654
No 149
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=4.3e-05 Score=82.29 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch---------------H---------------HHHHHHHHHHHHHcC
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID---------------V---------------AYLRSNMAGCYMQMG 100 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d---------------~---------------a~l~~NrAa~y~kL~ 100 (720)
+...+.++-..+++++|+..|..++++.|.+.+- . ..+++|+|.|.+--
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya- 371 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA- 371 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh-
Confidence 3455666666777888888888888888766521 0 35889999998886
Q ss_pred CCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 101 LGEFPRAINECNLALEVSS---KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 101 ~gdyeeAI~d~~kALeLdP---~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
++|+-++..+.+|+.... .-...||++|.+....|++..|.+.|+-+|.-||+|..++.+|+.+..+-+
T Consensus 372 -qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 372 -QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred -cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 899999999999998754 246789999999999999999999999999999999999999998877655
No 150
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.81 E-value=0.00014 Score=83.95 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.++.+...+|..++|...+...+..|+-.|.+.+ ...-.|..+..| |+-++|...+..++..++...-++.-+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHH
Confidence 5677888999999999999999999999999885 666778888888 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChhHH--hhhcCCCCCCCCcchhhHHHH
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDIDEK--MKEFGLDSSGEAHGALRFRKL 200 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ek--~~~L~~~~P~~P~~~~~l~~i 200 (720)
..+...++|++|+++|+.||.++|+|..+++-|..++..|++...-.... ..++- |.....+..++..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---PSQRASWIGFAVA 152 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---hhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998665443322 23333 5554445444433
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00017 Score=79.60 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
-+...+.+.+.++.+.++|..|+...+++|.++|+|. .+++.+|.||+.+ ++|+.|+.++.+|++++|+|-.+.
T Consensus 255 ~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 255 LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3445677899999999999999999999999999999 6999999999998 999999999999999999998888
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHc
Q 005002 126 LKRAQCYKALNRLDFA-FRDVNNVLSM 151 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeA-l~d~ekAL~L 151 (720)
.-+..|.....++... .+.|.+.+..
T Consensus 329 ~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 329 AELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888777766 5567666654
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00048 Score=72.31 Aligned_cols=115 Identities=20% Similarity=0.115 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
.+-.|..+-..|+|++|+++|+..|+-+|.+. .+|-..-++.-. +|.--.||...+.-|+.-+.+..|+..++.
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~----v~~KRKlAilka--~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDT----VIRKRKLAILKA--QGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchh----HHHHHHHHHHHH--cCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34567888889999999999999999999988 355543333333 488889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.|..+|+|+.|.-+|++++-+.|-|+.....++.++-.++.
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888874
No 153
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=7.2e-05 Score=87.08 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=90.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKA 134 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~ 134 (720)
|+-.+..++|.+|..+++..++++|-.. ..|+++|.|.+++ +++..|..+|.+++.++|++..++.+++.+|..
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~----~~wf~~G~~ALql--ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQL----GTWFGLGCAALQL--EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccch----hHHHhccHHHHHH--hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 3444566888888888888888888777 4888888888887 888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 135 LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 135 LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
+++-.+|...+.+|++.+-.|-..+.+...+-..++..
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence 88888888888888888877777787777777766643
No 154
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.68 E-value=0.001 Score=62.85 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--------VAYLRSNMAGCYMQMGLGEFPRAINECNLALEV----- 117 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--------~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----- 117 (720)
....|...++.|-|++|...|++|+...-.-+++ .+.+|..++.++..| |+|++++....+||..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L--gry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL--GRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcc
Confidence 3456778889999999999999999876554432 478999999999998 9999999999999853
Q ss_pred --CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 118 --SSK----YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 118 --dP~----~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+.+ |..+.+.+|.++..+|+.++|+..|+++-++
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444 6778899999999999999999999988654
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.00039 Score=80.31 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005002 64 HEGAMLKYEKALKL--LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 64 yeeAl~~Y~kAL~L--~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeA 141 (720)
...|.....+++.+ +|..+ .+|.-+|..+... |++++|...+++|+.++| +..+|+.+|.++...|++++|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~----~~~~ala~~~~~~--g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLP----RIYEILAVQALVK--GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred HHHHHHHHHHhhhcccCcCCh----HHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 45566666676664 45444 5788888887775 999999999999999999 578999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHH
Q 005002 142 FRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 142 l~d~ekAL~LdP~n~~A 158 (720)
+..|++|+.++|.++..
T Consensus 473 ~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 473 ADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHhcCCCCchH
Confidence 99999999999998753
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=4.5e-05 Score=65.89 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 101 LGEFPRAINECNLALEVSSK--YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 101 ~gdyeeAI~d~~kALeLdP~--~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+++|+.|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ +..+|.+...+..++++...+++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 48999999999999999995 466788899999999999999999999 8899999899999999998887543
No 157
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.66 E-value=0.00093 Score=74.34 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
......+..+...|++++|.....++++. |.++. + ...|..+..+++.+++..+++.++.+|+++..++.+
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~----l----~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER----L----VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH----H----HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34556788999999999999999999994 44441 2 222333224899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI 176 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~ 176 (720)
|+.+...+++++|...|+++++++|++... ..+..++...++...+.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKPEEAA 381 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999998764 36888888887554443
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=97.65 E-value=0.00026 Score=79.73 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeA 141 (720)
.+-.+|+..-.+|++++|.++ .++..+|.++... ++++.|+..+++|+.++|+++.++|.+|..+...|+.++|
T Consensus 318 ~~~~~a~~~A~rAveld~~Da----~a~~~~g~~~~~~--~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDG----KILAIMGLITGLS--GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhh--cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Confidence 446789999999999999999 6999999998887 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHH
Q 005002 142 FRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 142 l~d~ekAL~LdP~n~~A 158 (720)
+..+++++.++|.-..+
T Consensus 392 ~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 392 RICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHhccCchhhHH
Confidence 99999999999986544
No 159
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0002 Score=79.25 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--H-----------------------------HHHHHHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--V-----------------------------AYLRSNMA 93 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--~-----------------------------a~l~~NrA 93 (720)
-....-+-..|.++|..|++.+|+..|+++..++|.+... . +..+...+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 3445566788999999999999999999999999986531 0 11112222
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 94 GCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 94 a~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
..|.. ++|..|+.+..++|+.+|++..+|+..|.++..+|+.++|+-.|+.|..+.|-+-...++|-.++.+.+..
T Consensus 309 ~l~~~---K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 309 LLYDE---KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhh---hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 22333 79999999999999999999999999999999999999999999999999999999999998888877643
No 160
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.60 E-value=0.00041 Score=76.88 Aligned_cols=103 Identities=18% Similarity=0.327 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----------ch----HHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH----------ID----VAYLRSNMAGCYMQMGLGEFPRAINEC 111 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~----------~d----~a~l~~NrAa~y~kL~~gdyeeAI~d~ 111 (720)
+..+.....|..+|++++|..|+..|..||++..+.. .+ .+.+-..+..||+++ ++.+.|+.+.
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~--rkpdlALnh~ 251 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRM--RKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhc--CCCchHHHHH
Confidence 4445556688899999999999999999999886422 12 245667899999999 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 112 NLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 112 ~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
.+.|-++|.++..+++.|.|+..|.+|.+|-+.+..+.-
T Consensus 252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776654
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0012 Score=69.51 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=99.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
..--.+-.+|+--+||....+-++..+.+++ +|.-+|..|+.+ ++|++|+-+++..+=++|.++-.+.|+|.++
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~E----AW~eLaeiY~~~--~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQE----AWHELAEIYLSE--GDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHhH--hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3334455667777999999999999999995 999999999998 9999999999999999999999999999999
Q ss_pred HHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 133 KALN---RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 133 ~~LG---ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+-+| ++..|..+|.++++++|.|..++.++-.+-..+.
T Consensus 199 Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 9887 6788999999999999999888888888777664
No 162
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.58 E-value=0.001 Score=76.91 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+++.+|.+|-.+ |+|++|+.++++||+..|+.+..|+.+|++|-..|++.+|...++.|..+|+.|.-..........
T Consensus 196 ~~~~lAqhyd~~--g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYL--GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 557778888887 899999999999999999999999999999999999999999999999999988776665555554
Q ss_pred Hhh
Q 005002 168 SMI 170 (720)
Q Consensus 168 ~l~ 170 (720)
+.+
T Consensus 274 Ra~ 276 (517)
T PF12569_consen 274 RAG 276 (517)
T ss_pred HCC
Confidence 443
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.57 E-value=0.00055 Score=76.59 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=92.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLD 139 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGrye 139 (720)
..++|+.|+..|++....+|. +..-+|.+|+.+ ++..+|+....++|..+|.+...+...|..+...++|+
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~--~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE-------VAVLLARVYLLM--NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 356799999999998887765 334578888876 78889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh
Q 005002 140 FAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI 176 (720)
Q Consensus 140 eAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~ 176 (720)
.|+...+++..+.|++...|..|..++..+++...+.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999888665443
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.0014 Score=70.86 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-H
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS-K 123 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~-K 123 (720)
+..|+-+.+.+..+....+++.|+....+|+..+|++. .+-.-+|.+++.. |+|..|++.+..+++.||.+. .
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----RAsi~lG~v~~~~--g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV----RASIILGRVELAK--GDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce----ehhhhhhHHHHhc--cchHHHHHHHHHHHHhChHHHHH
Confidence 47899999999999999999999999999999999988 4667789999986 999999999999999999984 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
.+-.+..||..+|+.++.+..+.++....++....
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 78889999999999999999999999988775543
No 165
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.00054 Score=80.07 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH-----------------------HHH----H
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMA-----------------------GCY----M 97 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrA-----------------------a~y----~ 97 (720)
.++...+-..-.+|...|+..+|-....+-++ .|.++. +|+.+| ..| .
T Consensus 421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~----lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~ 495 (777)
T KOG1128|consen 421 FERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPR----LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI 495 (777)
T ss_pred HHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcch----hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc
Confidence 45666667777788888888888888777777 343331 222222 222 1
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh
Q 005002 98 QMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID 177 (720)
Q Consensus 98 kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ 177 (720)
. ..++|.++..+++.+++++|-....||++|.|..+++++..|..+|.+++.++|+|..++.++...+..++.+..+..
T Consensus 496 ~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 496 L-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred c-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 1 148999999999999999999999999999999999999999999999999999999999999999999987665554
No 166
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.54 E-value=0.00013 Score=52.58 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
++|+++|.+|..+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666654
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.00065 Score=72.14 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-
Q 005002 45 ISMSQELKEEGNKLFQK-RDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK- 120 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~-GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~- 120 (720)
...|..+.+.|..+... |+++.|+..|.+|+.+..... .....++.+.|.++.++ ++|++|+..|++++...-+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l--~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL--GRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhhcc
Confidence 35677888889988888 999999999999999865433 23567889999999998 9999999999999875321
Q ss_pred -----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhh
Q 005002 121 -----YS-KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA--LEVLESVKQSMI 170 (720)
Q Consensus 121 -----~~-KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A--~~~L~~lk~~l~ 170 (720)
.+ ..+++.+.|++.+|++..|...|++....+|..... ...+..+...+.
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 23 356788999999999999999999999999964332 334555555554
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.00071 Score=63.78 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN---NSSALE 160 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~---n~~A~~ 160 (720)
.+++++|.++-.+ |+.++|+..|.+||....+ -..+++.+|.+|..+|++++|+..++.++.-.|+ +.....
T Consensus 2 ~~~~~~A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 4788999999998 9999999999999997654 3679999999999999999999999999999888 777777
Q ss_pred HHHHHHHHhhhhccChh
Q 005002 161 VLESVKQSMIEKGIDID 177 (720)
Q Consensus 161 ~L~~lk~~l~eka~a~~ 177 (720)
.+..+...+++...++.
T Consensus 80 f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 80 FLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 77777777765544433
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0026 Score=68.18 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHH
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN---RLDF 140 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG---ryee 140 (720)
.+.-+...+..|..+|++.. -|.-+|.+||.+ +++..|...|.+|+++.|+++..+..+|.+++... .-.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~e----gW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~ 211 (287)
T COG4235 138 MEALIARLETHLQQNPGDAE----GWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAK 211 (287)
T ss_pred HHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHH
Confidence 56677778888999999994 999999999998 99999999999999999999999999999998865 3567
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh
Q 005002 141 AFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI 176 (720)
Q Consensus 141 Al~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~ 176 (720)
+...+++++.+||+|..++..|.......++.+.+.
T Consensus 212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA 247 (287)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 889999999999999999999999988887665544
No 170
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.47 E-value=0.00022 Score=54.86 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
.+++.+|.+|..+|++++|+..|+++++++|+|+.++..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 466777777777777777777777777777777777776654
No 171
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0007 Score=75.05 Aligned_cols=131 Identities=18% Similarity=0.129 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+.-.|..+|..++|..|+.+-.|+|.++|++++ +|.-.|..+.++ ++..+|+-.|..|+.+-|.....|-.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~----alilKG~lL~~~--~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE----ALILKGRLLIAL--ERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch----HHHhccHHHHhc--cchHHHHHHHHHHHhcchhhHHHHHH
Confidence 456677788899999999999999999999999995 888889999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHH---HhhhhccChhHHhhhcC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE-SVKQ---SMIEKGIDIDEKMKEFG 184 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~-~lk~---~l~eka~a~~ek~~~L~ 184 (720)
+-.||...|++.+|+..-+.++..-|.+..++..++ .+.. ...++++...++...+.
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999988885 3322 22344444445554444
No 172
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.44 E-value=0.00046 Score=74.11 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=89.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM--GLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL--~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
.-..+++.++++.|...+...-+.+.+. +..+++.++..+ +.+.+.+|.-.|+...+..|.++..+..+|.|
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDS------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCH------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4457788888999988888877665442 455566655554 34579999999999877778899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~ 174 (720)
++.+|+|++|...+..++..+|+++.++.++.-+...++....
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 9999999999999999999999999999999888888776533
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.004 Score=58.96 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc------h------------HHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI------D------------VAYLRSNMAGCYMQMGLGEFPRAIN 109 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~------d------------~a~l~~NrAa~y~kL~~gdyeeAI~ 109 (720)
-..+...|......++...++..|.+|+.+.....- + ...+...++.++... |+++.|+.
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~--~~~~~a~~ 83 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEA--GDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence 445666788888999999999999999998865431 0 145566667777776 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 110 ECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 110 d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
.|.+++.++|.+-.+|..+-.+|..+|++.+|+..|+++..
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 174
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0004 Score=75.08 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
+.|.+|++.|.+.+|-..++.+|...|--. .+.-++.+|..+ .+...|+..+...|+.-|.++-.+...|+++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~d-----TfllLskvY~ri--dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPD-----TFLLLSKVYQRI--DQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchh-----HHHHHHHHHHHh--ccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 578888888888888888888877665422 444455555555 5566666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 133 KALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
+.++++++|++.|+.+++++|.|.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nv 324 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINV 324 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccc
Confidence 666666666666666666665543
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.43 E-value=0.0013 Score=79.90 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----------
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV----------- 117 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----------- 117 (720)
.++...|.+|-+.|++++|...|+++|+++|.++ .+.+|+|..|... +.++|+..+.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~----~aLNn~AY~~ae~---dL~KA~~m~~KAV~~~i~~kq~~~~~ 189 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNP----EIVKKLATSYEEE---DKEKAITYLKKAIYRFIKKKQYVGIE 189 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 4788899999999999999999999999999999 5999999999884 889999988888754
Q ss_pred ---------CCCCHHHHH--------HHH------------HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 118 ---------SSKYSKALL--------KRA------------QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 118 ---------dP~~~KAy~--------rrA------------~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
+|++..-++ .++ .+|..+++|++++..++.+|.++|.|.-++..+..+++.
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 344333211 134 889999999999999999999999999999999999883
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.36 E-value=0.0024 Score=71.56 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
..-.+..++..++..+|+....++|...|.+. .++.-.|..+++. ++|+.|+..+.+|+++.|+..+.|+.++.
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~----~LL~~Qa~fLl~k--~~~~lAL~iAk~av~lsP~~f~~W~~La~ 276 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQDS----ELLNLQAEFLLSK--KKYELALEIAKKAVELSPSEFETWYQLAE 276 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33467778888999999999999999999887 4788888888886 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
||..+|+|+.|+..++.+--+.+.+
T Consensus 277 ~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 277 CYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 9999999999997777554443333
No 177
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.36 E-value=0.00039 Score=49.54 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
++++.+|.+|+.+|+|++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777764
No 178
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.35 E-value=0.00063 Score=73.75 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=68.1
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhc--CCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCC--CceEEE
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRF--PSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQ--SFLRLY 335 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF--~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~--~~~rL~ 335 (720)
-..+|+.|+.||.+..+...++|.+|..-|++-- -.-..|++||.|||||-+||+|..||..|+.+.... ..+-++
T Consensus 15 ~vrlka~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d~el~ih 94 (593)
T KOG0695|consen 15 RVRLKAHYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRDEELIIH 94 (593)
T ss_pred cEEEEEeecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhccccceEEE
Confidence 3459999999999999988999999999888754 345669999999999999999999999999887543 334444
Q ss_pred EEeeCCCC
Q 005002 336 IAEVSPDQ 343 (720)
Q Consensus 336 v~ev~p~~ 343 (720)
|-...|++
T Consensus 95 vf~~~pe~ 102 (593)
T KOG0695|consen 95 VFPSTPEQ 102 (593)
T ss_pred EccCCCCC
Confidence 44446764
No 179
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.35 E-value=0.00031 Score=50.48 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~ 121 (720)
.+|+++|.||+.+ ++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQL--GDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCcCC
Confidence 5788888888887 88888888888888888864
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.32 E-value=0.00025 Score=52.18 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005002 111 CNLALEVSSKYSKALLKRAQCYKALNRLDFAF 142 (720)
Q Consensus 111 ~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl 142 (720)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888885
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.32 E-value=0.0068 Score=61.37 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhCC
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG---------LGEFPRAINECNLALEVSS 119 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~---------~gdyeeAI~d~~kALeLdP 119 (720)
......|..+|+.|+|..|+..|++-+...|+++ ....+++.+|.|++.+. ++...+|+..++..|+.-|
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 3567789999999999999999999999999977 45578888999987651 1234689999999999999
Q ss_pred CCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHhh
Q 005002 120 KYSKA-----------------LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVL---ESVKQSMI 170 (720)
Q Consensus 120 ~~~KA-----------------y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L---~~lk~~l~ 170 (720)
++..+ -+..|.-|+..|.|..|+.-++.++.--|+.+.+...+ ......++
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 85421 34478889999999999999999999999986655444 44444444
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.28 E-value=0.0018 Score=68.75 Aligned_cols=84 Identities=14% Similarity=-0.036 Sum_probs=71.3
Q ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 005002 87 YLRSNMAGCY-MQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN---SSAL 159 (720)
Q Consensus 87 ~l~~NrAa~y-~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n---~~A~ 159 (720)
...++.|.++ ++. ++|++|+..|...|...|++ +.++|.+|.+|+..|+|++|+..|.+++...|++ +.++
T Consensus 143 ~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 5677788876 443 89999999999999999987 5899999999999999999999999999998885 6666
Q ss_pred HHHHHHHHHhhhh
Q 005002 160 EVLESVKQSMIEK 172 (720)
Q Consensus 160 ~~L~~lk~~l~ek 172 (720)
..++.+...+++.
T Consensus 221 ~klg~~~~~~g~~ 233 (263)
T PRK10803 221 FKVGVIMQDKGDT 233 (263)
T ss_pred HHHHHHHHHcCCH
Confidence 6677777666543
No 183
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.27 E-value=0.00068 Score=81.30 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--------------------------------HHHHHHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--------------------------------VAYLRSNMAG 94 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--------------------------------~a~l~~NrAa 94 (720)
.|..+--.|..|..--|...|..+|.+|.++|+.+..- ....|..||.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 45566677777777777888888888988888876521 0234445677
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc
Q 005002 95 CYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 95 ~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~ 174 (720)
.|..- +++..|+.++..||+.+|.+..++..+|.+|...|+|.-|++.|.+|..++|.+.-++--..-....+++...
T Consensus 571 yyLea--~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEA--HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCc--cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 77764 8888899999999999999999999999999999999999999999999999887777666666666665544
Q ss_pred Chh
Q 005002 175 DID 177 (720)
Q Consensus 175 a~~ 177 (720)
.++
T Consensus 649 ald 651 (1238)
T KOG1127|consen 649 ALD 651 (1238)
T ss_pred HHH
Confidence 433
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.27 E-value=0.0013 Score=70.81 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HH
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRL-DF 140 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGry-ee 140 (720)
..|.+|...|++.....|.++ .+++.+|.|++++ |+|++|...+..|++.+|+++.++.+++.|...+|+. +.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~----~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTP----KLLNGLAVCHLQL--GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SH----HHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred hhHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 469999999999776656655 6889999999998 9999999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHcCCCCHHHHHH
Q 005002 141 AFRDVNNVLSMEPNNSSALEV 161 (720)
Q Consensus 141 Al~d~ekAL~LdP~n~~A~~~ 161 (720)
+-+.+..+...+|+++-....
T Consensus 255 ~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHH
Confidence 777888888899998865543
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.011 Score=61.90 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC----------------CCHHHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL----------------GEFPRAINECNL 113 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~----------------gdyeeAI~d~~k 113 (720)
.....|..+++.++|.+|+..|++.+++.|+++ ....+++.+|.|++.++. .....|+..++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~ 149 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK 149 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence 456889999999999999999999999999987 456789999999766511 113578999999
Q ss_pred HHHhCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 114 ALEVSSKYSK---A--------------LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 114 ALeLdP~~~K---A--------------y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
.|+.-|+..- | -+..|+-|...|+|..|+.-++.++.--|+.+...+.|-.+..
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 9999998542 2 2346777999999999999999999999987655555444433
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.23 E-value=0.00048 Score=74.77 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 90 SNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 90 ~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
-.+|.-|++. |.|++||.+|.+++.++|.|+-.|.+||.+|+.+++|..|..++..|+.|+-....|.......+..+
T Consensus 101 KE~GN~yFKQ--gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQ--GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhc--cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4578889996 99999999999999999999999999999999999999999999999999988777777777777766
Q ss_pred h--hhccChhHHhhhcC
Q 005002 170 I--EKGIDIDEKMKEFG 184 (720)
Q Consensus 170 ~--eka~a~~ek~~~L~ 184 (720)
+ ..+...++....|.
T Consensus 179 g~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALE 195 (536)
T ss_pred hhHHHHHHhHHHHHhhC
Confidence 5 22333345556666
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0032 Score=68.81 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=88.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------------HhCC
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL--------------EVSS 119 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL--------------eLdP 119 (720)
.|-++|..|+|++|+..|+-+...+..+. .++.|+|.|++-+ |.|.+|.....+|- +++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~----el~vnLAcc~FyL--g~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPA----ELGVNLACCKFYL--GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCc----ccchhHHHHHHHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 58899999999999999999887544444 5999999999998 99999987666541 1111
Q ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 120 ------------KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 120 ------------~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+...--+.+|.+++..-.|.+|+..|.++|.-+|+-......+..|.-.+.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD 199 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc
Confidence 112234557888888889999999999999999999888889999988775
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.20 E-value=0.0066 Score=64.04 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK---A 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K---A 124 (720)
+..|.++|...++.|+|.+|+..|+......|..+-. -.+...++.++++- ++|+.|+..+++-+.+.|.++. +
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~--~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKN--GEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4589999999999999999999999999999987632 35777888999996 9999999999999999997754 6
Q ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhh
Q 005002 125 LLKRAQCYKALN--------RLDFAFRDVNNVLSMEPNN---SSALEVLESVKQSMI 170 (720)
Q Consensus 125 y~rrA~Ay~~LG--------ryeeAl~d~ekAL~LdP~n---~~A~~~L~~lk~~l~ 170 (720)
+|.+|.++...= --..|+..|+.++..-|+. +.+...+..+...+.
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence 888999976542 2456888999999999997 456666666665554
No 189
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00098 Score=69.57 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
..|..||..|.+||.++|..+..|-+++.||+.+++++.+..+..++++++|+...+...++.+.......-.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988877644433
No 190
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.15 E-value=0.0026 Score=73.70 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+--.|-.+...|+-++|...-..+++.++..+ ++|.-+|..+..- .+|++||.+|..||.++|+|...|.-
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----VCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccc----hhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34555678889999999999999999999999999 7999999999885 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI 176 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~ 176 (720)
++....++++|+.....-.+.|++.|++...|-.+......+++...+.
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888887665443
No 191
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.14 E-value=0.002 Score=52.51 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
..+|.+|.+++.+|+|+.|+..++.+|+++|+|..+......+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999999988877543
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.0017 Score=71.93 Aligned_cols=123 Identities=17% Similarity=0.119 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CC
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPK--NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS------KY 121 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~--~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP------~~ 121 (720)
++-+.||++.-.|+|+.|+++|.+++.+.-. +....+...+.+|.+|..+ .+|.+||.+..+-|.+.. .-
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll--~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL--KEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456788888888888888888887765432 2222356777788888887 788889988888665532 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CHHHHHHHHHHHHHhhhhcc
Q 005002 122 SKALLKRAQCYKALNRLDFAFRDVNNVLSM-----EPN-NSSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 122 ~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L-----dP~-n~~A~~~L~~lk~~l~eka~ 174 (720)
..+++.+|.+|-.+|..+.|+.+.+..+.+ ||. ...++.+|..+...++..-.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 678999999999999999999888887764 222 35677777777777764443
No 193
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.10 E-value=0.0044 Score=72.05 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=83.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005002 59 FQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRL 138 (720)
Q Consensus 59 fk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGry 138 (720)
|...+|+.|...|.+|-...|.. .+|+..+.....+ ++.++|+..|+.+|+.-|++.|.|+.+|.+++.+++.
T Consensus 629 ~en~e~eraR~llakar~~sgTe-----Rv~mKs~~~er~l--d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGTE-----RVWMKSANLERYL--DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred hccccHHHHHHHHHHHhccCCcc-----hhhHHHhHHHHHh--hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 33444444555554444443332 3666666665555 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 139 DFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 139 eeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+.|...|...+...|+....+..|.++....+
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999998877654
No 194
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.10 E-value=0.02 Score=52.23 Aligned_cols=117 Identities=25% Similarity=0.288 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHhCC---CCHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAG-CYMQMGLGEFPRAINECNLALEVSS---KYSK 123 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa-~y~kL~~gdyeeAI~d~~kALeLdP---~~~K 123 (720)
...+...|......++|..|+..+.+++...+... ......+. ++..+ +++..|+..+.+++..+| ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPD----LAEALLALGALYEL--GDYEEALELYEKALELDPELNELAE 168 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc----hHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCccchHH
Confidence 34555666666666777777777777777666553 13333333 56665 777777777777776665 3555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhh
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPN-NSSALEVLESVKQSMI 170 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~-n~~A~~~L~~lk~~l~ 170 (720)
.++.++..+...++++.|+..+.+++...|. ...+...+..+....+
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 6666666666777777777777777777777 4555555555555444
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0026 Score=65.06 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
.++.-|-++|.++++.+.++.||...++||.+.|.+. .++..||.+|-++ ..|+.|+.+|.+.++++|....|
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~--ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKM--EKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCcchHHH
Confidence 4556777899999999999999999999999999988 5888999999999 99999999999999999986643
No 196
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.06 E-value=0.0055 Score=71.24 Aligned_cols=125 Identities=17% Similarity=-0.026 Sum_probs=109.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYK 133 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~ 133 (720)
-++...-.++.++|+...++||+..|..+ .+|.-+|.++.++ ++.+.|...|...++..|..+..++.++..-+
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~----Kl~lmlGQi~e~~--~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFH----KLWLMLGQIEEQM--ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchH----HHHHHHhHHHHHH--HHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 34555567889999999999999999999 6999999999998 99999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChhHHhhhcC
Q 005002 134 ALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDIDEKMKEFG 184 (720)
Q Consensus 134 ~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~ek~~~L~ 184 (720)
..|..-.|...++++.--+|+|...+...-+...+.+.+..+..-..+.|+
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999888877777777655544444444444
No 197
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.05 E-value=0.0016 Score=78.33 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+..+|-.+...+++.+|+..|+-|++.+|++. .+|..+|.+|... |.|..|+..+++|..++|.+.-+-|..
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~----n~W~gLGeAY~~s--Gry~~AlKvF~kAs~LrP~s~y~~fk~ 636 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY----NLWLGLGEAYPES--GRYSHALKVFTKASLLRPLSKYGRFKE 636 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhH----HHHHHHHHHHHhc--CceehHHHhhhhhHhcCcHhHHHHHHH
Confidence 3455688889999999999999999999999999 5999999999997 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|.....+|+|.+|+..+...+.....-..++..+..+..++.
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999999999887777777888887777663
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.94 E-value=0.002 Score=49.57 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
.++..+|.+|..+ |++++|+..++++|+.+|+++.+++.+|.+
T Consensus 2 ~~~~~la~~~~~~--G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRL--GQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3678899999997 999999999999999999999999888753
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.92 E-value=0.002 Score=45.81 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~ 121 (720)
.+|+++|.+|+.+ |+|++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~--~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQL--GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHCcCC
Confidence 4666777777776 77777777777777777764
No 200
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.92 E-value=0.0039 Score=64.50 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=81.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 005002 81 NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALE 160 (720)
Q Consensus 81 ~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~ 160 (720)
..++++.+++.||..|-.+ |-+..|.-+++.+|.+.|+-+.++..+|.-+..-|+|+.|...|+.++++||.+.-+..
T Consensus 60 ~~eeRA~l~fERGvlYDSl--GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 60 TDEERAQLLFERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred ChHHHHHHHHHhcchhhhh--hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 3446789999999999998 99999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHhhhhccChh
Q 005002 161 VLESVKQSMIEKGIDID 177 (720)
Q Consensus 161 ~L~~lk~~l~eka~a~~ 177 (720)
+.+...-..++...+.+
T Consensus 138 NRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 138 NRGIALYYGGRYKLAQD 154 (297)
T ss_pred ccceeeeecCchHhhHH
Confidence 76655554444444433
No 201
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.86 E-value=0.0037 Score=66.38 Aligned_cols=105 Identities=22% Similarity=0.256 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK--NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--SK 120 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~--~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--P~ 120 (720)
-..+..+..-|+.+-..++|.+|...|.+|..+.-. +....+..|.+.+.||.+ .++.+|+..+++|+++- -+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~---~~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK---GDPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHhcC
Confidence 356778888899999999999999999999876643 333467889999999988 49999999999999872 22
Q ss_pred ----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC
Q 005002 121 ----YSKALLKRAQCYKAL-NRLDFAFRDVNNVLSME 152 (720)
Q Consensus 121 ----~~KAy~rrA~Ay~~L-GryeeAl~d~ekAL~Ld 152 (720)
-.+++.++|.+|... |+++.|+..|++|+.+-
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 256899999999999 99999999999999873
No 202
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.79 E-value=0.033 Score=50.82 Aligned_cols=107 Identities=27% Similarity=0.364 Sum_probs=88.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 005002 57 KLFQKRDHEGAMLKYEKALKLLPK-NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK-YSKALLKRAQCYKA 134 (720)
Q Consensus 57 ~lfk~GdyeeAl~~Y~kAL~L~P~-~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~-~~KAy~rrA~Ay~~ 134 (720)
.++..|++..|+..|.+++...|. .. ....+..++..+... +++..|+..+.+++...+. ....+..++.++..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE--LAEALLALGALLEAL--GRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc--hHHHHHHhhhHHHHh--cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 899999999999999999997773 11 124566666666665 8999999999999999999 79999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 135 LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 135 LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
.++++.|+..+..++...|........+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 999999999999999999985555555555555
No 203
>PRK10941 hypothetical protein; Provisional
Probab=96.76 E-value=0.012 Score=62.73 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
......|+-.+|++. ++|+.|+.++++.|.++|+++.-+--||.+|.++|.+..|+.|++..+...|+++.+......
T Consensus 180 l~Rml~nLK~~~~~~--~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 180 IRKLLDTLKAALMEE--KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 467888999999996 999999999999999999999998899999999999999999999999999999988665555
Q ss_pred HHH
Q 005002 165 VKQ 167 (720)
Q Consensus 165 lk~ 167 (720)
+..
T Consensus 258 l~~ 260 (269)
T PRK10941 258 IHS 260 (269)
T ss_pred HHH
Confidence 543
No 204
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.011 Score=57.10 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=67.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHH
Q 005002 93 AGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS----SALEVLESVKQS 168 (720)
Q Consensus 93 Aa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~----~A~~~L~~lk~~ 168 (720)
|.+...- |+.+.|++-|.++|.+.|.++.+|.+|+.+|.-.|+.++|+.++++++++..+.. .+....+.+++.
T Consensus 50 ~valaE~--g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEA--GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhc--cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4445554 9999999999999999999999999999999999999999999999999965532 233445556666
Q ss_pred hhhh--ccChhHHhhhcC
Q 005002 169 MIEK--GIDIDEKMKEFG 184 (720)
Q Consensus 169 l~ek--a~a~~ek~~~L~ 184 (720)
++.. +....+.+.+++
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 6532 222234445555
No 205
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=96.71 E-value=0.0085 Score=52.51 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=54.1
Q ss_pred EEeccCCCCHHHHHHHHHhhcCCC-CceeEEeeCCCCC--eeeecCchHHHHHHHhhcCCCceEEEEE
Q 005002 273 WAQLPVNCSIRLVRDIVRDRFPSL-KGVLVKYKDQEGD--LVTITTTDELRFVEMLFNSQSFLRLYIA 337 (720)
Q Consensus 273 ~~~~~~~~s~~~L~~~v~~kF~~~-~~~~ikYkDedGD--lVtitsd~dl~~A~~~~~~~~~~rL~v~ 337 (720)
.+.+|...+|.+|+.+|.++++-. ....+.|++++++ +|.|+-+++++-|-+.+ ..|.+.|-++
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v-~~~~ltLwcq 76 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDV-ADGPRGLQLQ 76 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhc-cCCceEEEEe
Confidence 345699999999999999999744 3399999988875 88888899999999987 6888888775
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=96.65 E-value=0.0062 Score=60.52 Aligned_cols=88 Identities=8% Similarity=-0.099 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
...+..|.-+++. |+|++|...|.-..-++|.+++.++.+|.|+..+++|+.|+..|-.+..++++|+...-..+.|.
T Consensus 38 e~iY~~Ay~~y~~--Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 38 DGLYAHAYEFYNQ--GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 3455566667775 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCh
Q 005002 167 QSMIEKGIDI 176 (720)
Q Consensus 167 ~~l~eka~a~ 176 (720)
..+++...+.
T Consensus 116 l~l~~~~~A~ 125 (165)
T PRK15331 116 LLMRKAAKAR 125 (165)
T ss_pred HHhCCHHHHH
Confidence 9987654433
No 207
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.61 E-value=0.0031 Score=45.07 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777764
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.0041 Score=69.13 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------CCC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS------SKY 121 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd------P~~ 121 (720)
+-++-.+|..+++.|++...+..|..||..-..+...++.+|+.+|.+|+-+ ++|.+|+++-..-|.+. -.-
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL--~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYL--KDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhH--hhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 6688899999999999999999999999998887766788999999999998 99999998765554442 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 122 SKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 122 ~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+|+--++|..+--+|.|++|+.++.+-|.+
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~ 124 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDF 124 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHH
Confidence 677788999999999999999999887754
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.55 E-value=0.025 Score=57.65 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLL-PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK--YSKAL 125 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~-P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~--~~KAy 125 (720)
+.....|+.+...|+|.+|..+|.+++.=. -.++ ..+..+|.+.+.+ +++..|....+...+.+|. .+...
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~--~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAI--QEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhh--ccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344568999999999999999999998632 2223 6788899999998 9999999999999999985 57888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
+..|++|..+|++..|...|+-++..-|+-.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999988754
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.53 E-value=0.0027 Score=46.67 Aligned_cols=34 Identities=35% Similarity=0.608 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 70 KYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAIN 109 (720)
Q Consensus 70 ~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~ 109 (720)
.|++||+++|+++ .+|+|+|.+|... |++++|++
T Consensus 1 ~y~kAie~~P~n~----~a~~nla~~~~~~--g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA----EAYNNLANLYLNQ--GDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH----HHHHHHHHHHHHC--cCHHhhcC
Confidence 4899999999999 5999999999997 99999863
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.024 Score=65.47 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH-----------------------------HHHHHHHHHHHHHcC
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDV-----------------------------AYLRSNMAGCYMQMG 100 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~-----------------------------a~l~~NrAa~y~kL~ 100 (720)
.+...-|.+...++|++|+..-.+.|...|++.... ..+.+..|.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl- 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL- 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc-
Confidence 455566667777777777777777777766654210 12235677777777
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 101 LGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 101 ~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
+..++|+..++ .+++...+.+..+|.+++.+|+|++|+..|+..++-+-++.+.
T Consensus 93 -nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 93 -NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred -ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 77777877777 5666677777788888888888888888888777766555443
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.29 E-value=0.022 Score=55.42 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
..+++.|...++- |+|..|+..++.....-|. -..+.+.+|.+|+..++|++|+..+++.++|+|+++.
T Consensus 11 ~~ly~~a~~~l~~--~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQEALQK--GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 6778888888886 9999999999999998885 4679999999999999999999999999999999864
No 213
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.20 E-value=0.0088 Score=68.85 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=93.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKA 134 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~ 134 (720)
|-.+...|+...|+.+...|+.+.|.... +-..|+|.++++- +-.-.|-....++|.++..-+-.+|-+|++|..
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~--~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHY--GLHLDATKLLLQALAINSSEPLTFLSLGNAYLA 688 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHh--hhhccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence 33344678999999999999999997553 5678999998887 778889999999999998889999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 135 LNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 135 LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
+.+.+.|++.|+.|+.++|+++.....|..+.
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999999999888776653
No 214
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.18 E-value=0.042 Score=63.80 Aligned_cols=97 Identities=18% Similarity=0.040 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+.-.+..+-..|+|++|+.+.++||.+.|..+ .+|.-.|.+|-.+ |++.+|....+.|-.+|+.+--.....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~----ely~~KarilKh~--G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV----ELYMTKARILKHA--GDLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 556678888899999999999999999999988 4999999999998 9999999999999999999888888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 005002 130 QCYKALNRLDFAFRDVNNVLSME 152 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~Ld 152 (720)
..+++.|++++|...+.....-+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999887765544
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.057 Score=62.57 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH 82 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~ 82 (720)
.+-.+|..+|+.|+|++|+..|+..++-..++.
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 445689999999999999999999876554433
No 216
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=96.10 E-value=0.04 Score=47.86 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=63.1
Q ss_pred eeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhc---CCCceEEEEE
Q 005002 262 TVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFN---SQSFLRLYIA 337 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~---~~~~~rL~v~ 337 (720)
.||+-|..+-|.+++|..+-|++|..+|...|. -.+-|.|...+ =+|.|.+-+||--|+...+ ...++|+++.
T Consensus 2 RiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afG--q~mdl~ytn~e-L~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~ 77 (79)
T cd06405 2 RIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFG--QPMDLHYTNNE-LLIPLKNQEDLDRAIELLDRSPHMKSLRILLS 77 (79)
T ss_pred eEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeEEEeccc-EEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence 489999999999999999999999999999994 56889998777 7899999999999977653 3456888764
No 217
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.032 Score=60.90 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=84.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Q 005002 61 KRDHEGAMLKYEKALKLLPK--NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK----YSKALLKRAQCYKA 134 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~--~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~----~~KAy~rrA~Ay~~ 134 (720)
.|++..-+... ++|..+|. .+.+.+.-|---|.-|++- .+|..|+..|++.|..... +.-.|.+||-|...
T Consensus 55 ~gd~~~~~~~L-qslK~da~E~ep~E~Aen~KeeGN~~fK~--Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~ 131 (390)
T KOG0551|consen 55 EGDPNPDNVCL-QSLKADAEEGEPHEQAENYKEEGNEYFKE--KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY 131 (390)
T ss_pred CCCCCccHHHH-HHhhhccccCChHHHHHHHHHHhHHHHHh--hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH
Confidence 45554444444 34555543 2334677777888999996 9999999999999987654 45679999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 135 LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 135 LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+|+|..|+.|+.+|+.++|.+.-+...-+.|...+..
T Consensus 132 l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 132 LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 9999999999999999999998887777777666654
No 218
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.97 E-value=0.012 Score=42.04 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~ 121 (720)
.+|+.+|.+|.++ |++++|+..+.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~--~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQL--GDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 3677777777776 77788888777777777753
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.035 Score=63.66 Aligned_cols=99 Identities=24% Similarity=0.145 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH--HH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL--LK 127 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy--~r 127 (720)
-+..+|..+..+|+.++|+..|++|+.....-......++..+|.||+-+ .+|++|..++.+.++.+ .+.+++ |.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~--~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ--HDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH--chHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 45678888999999999999999998544333323457899999999997 89999999999988854 556654 45
Q ss_pred HHHHHHHcCCH-------HHHHHHHHHHHHc
Q 005002 128 RAQCYKALNRL-------DFAFRDVNNVLSM 151 (720)
Q Consensus 128 rA~Ay~~LGry-------eeAl~d~ekAL~L 151 (720)
.|.|+..+++. ++|...|.++-.+
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 69999999998 5566555555443
No 220
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.82 E-value=0.053 Score=52.51 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMG-LGEFPRAINECNLALE-VSSK-YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 87 ~l~~NrAa~y~kL~-~gdyeeAI~d~~kALe-LdP~-~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
...+|+|.|+.... ..+-.+.|..++..++ -.|. .-..+|.+|..++++++|+.|+++++..|..+|+|..+...-.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 46678888877651 2356678888888886 5553 5678999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 005002 164 SVKQSMIE 171 (720)
Q Consensus 164 ~lk~~l~e 171 (720)
.++.++..
T Consensus 113 ~ied~itk 120 (149)
T KOG3364|consen 113 TIEDKITK 120 (149)
T ss_pred HHHHHHhh
Confidence 99888853
No 221
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.82 E-value=0.24 Score=55.22 Aligned_cols=121 Identities=17% Similarity=0.053 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-CCHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS-KYSK 123 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP-~~~K 123 (720)
.++|.....+|-.-+-.|+|..|.....++-+.-+... .+|.--|.+--++ |+++.|=.+..+|-++.+ +...
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~----l~~l~aA~AA~qr--gd~~~an~yL~eaae~~~~~~l~ 154 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV----LAYLLAAEAAQQR--GDEDRANRYLAEAAELAGDDTLA 154 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH----HHHHHHHHHHHhc--ccHHHHHHHHHHHhccCCCchHH
Confidence 47888899999999999999999999999766544433 4555555555566 999999999999999955 4567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.++.+++.+...|+|+.|...+..++...|.++.......+++..++.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA 202 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999988864
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.046 Score=60.13 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=82.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005002 57 KLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN 136 (720)
Q Consensus 57 ~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG 136 (720)
.+...+||.+|+...+-.+.++.... ..+-.-+|.||+.+ |+|++|+..|.-+.+-+.-+.+...++|.|+..+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE---~~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEE---DSLQLWIAHCYFHL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhh---HHHHHHHHHHHHhh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 45678999999999988886554433 24556679999998 99999999999999977778899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
.|.+|...-.+ .|+++-..+.+-.+-.+++
T Consensus 106 ~Y~eA~~~~~k----a~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 106 QYIEAKSIAEK----APKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhh----CCCChHHHHHHHHHHHHhC
Confidence 99999866544 3677766665555555444
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.76 E-value=0.015 Score=40.80 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
.|+|++|.|+..+|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888864
No 224
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.12 Score=55.03 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQM--GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 88 l~~NrAa~y~kL--~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
.+..+|.+|.++ +.+.+..|.-.|+..-+.-|..+..+...|.|++.+|+|++|...++.+|.-+++++.++.++--+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 444566666655 335678888888887776777889999999999999999999999999999999999999998888
Q ss_pred HHHhhhh
Q 005002 166 KQSMIEK 172 (720)
Q Consensus 166 k~~l~ek 172 (720)
-..+|..
T Consensus 251 a~~~Gkd 257 (299)
T KOG3081|consen 251 ALHLGKD 257 (299)
T ss_pred HHHhCCC
Confidence 7776543
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.092 Score=56.00 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHhCC--CCHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA----LEVSS--KYSKAL 125 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA----LeLdP--~~~KAy 125 (720)
.-..+++...|.|.-.+..|.+.++.+|...+ .+...++.+.|+. |+.+.|-.+++++ =.++. .+.-.+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p---~L~s~Lgr~~MQ~--GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP---QLLSGLGRISMQI--GDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccH---HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34556666666666666666666666644332 4555555555554 5555555555522 22222 122233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.+.+.+|...++|-.|...|.+.+..||.++.+..+-+.|+..+++
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555554443
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.064 Score=57.07 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 005002 89 RSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN---SSALEVL 162 (720)
Q Consensus 89 ~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n---~~A~~~L 162 (720)
.++.|.-+++. |+|..|...|..-|..-|+. +.|+|.+|.+++.+|+|+.|...|..+.+-.|.+ ++++--|
T Consensus 144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 78889999997 99999999999999998875 5799999999999999999999999999988876 5667777
Q ss_pred HHHHHHhhhhccC
Q 005002 163 ESVKQSMIEKGID 175 (720)
Q Consensus 163 ~~lk~~l~eka~a 175 (720)
+.+...++....+
T Consensus 222 g~~~~~l~~~d~A 234 (262)
T COG1729 222 GVSLGRLGNTDEA 234 (262)
T ss_pred HHHHHHhcCHHHH
Confidence 7777766644433
No 227
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.64 E-value=0.017 Score=38.02 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
+++++|.++..+++++.|+..|++++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665554
No 228
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.54 E-value=0.24 Score=51.31 Aligned_cols=98 Identities=20% Similarity=0.149 Sum_probs=74.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhCCC----
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLL---PKNHIDVAYLRSNMAGCYMQMGLGE-------FPRAINECNLALEVSSK---- 120 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~---P~~~~d~a~l~~NrAa~y~kL~~gd-------yeeAI~d~~kALeLdP~---- 120 (720)
+..+-..+.+++|+..|.-||-.. ...+...+.++..+|.+|-.+ ++ +..|+..|.+|++....
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~--~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~ 161 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL--GDEENEKRFLRKALEFYEEAYENEDFPIEG 161 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 335556778999999999998443 233335688999999999887 66 45566667777665432
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 121 --YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 121 --~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
....+|.+|..++.+|++++|++.|.+++..--.
T Consensus 162 ~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 162 MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3578999999999999999999999999976433
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.39 Score=52.01 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH----------------
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNL---------------- 113 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~k---------------- 113 (720)
....+|..+...|++.+|...|..++...|++. .+...++.||..+ |+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~--g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAA--GDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHc--CChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456788899999999999999999999999997 4778888999887 777555443332
Q ss_pred ------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhh
Q 005002 114 ------------------ALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN--NSSALEVLESVKQSMI 170 (720)
Q Consensus 114 ------------------ALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~--n~~A~~~L~~lk~~l~ 170 (720)
.+..+|++..+-+.+|..|...|++++|+..+-..+..+-+ |..+++.|-.+...++
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 22347889999999999999999999999888888776543 5666666666665554
No 230
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.094 Score=61.25 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
.+.+.+..+|+..+|..+++.|...+...|.+..+ .+.+..+++.||+++ .+.++|++.+..|=+.+|.++-.-+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L--~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL--EQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhhccccHHHHHH
Confidence 45678889999999999999999999999976653 477888999999998 99999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
.-.+...-++-++|+.........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888899999999888777654
No 231
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.40 E-value=0.18 Score=61.40 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------CH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK------YS 122 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~------~~ 122 (720)
.....|..++..|+|++|...+..++...|.... ....+++++|.++... |++++|+..+.+++.+... ..
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~--G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK--GELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3445788899999999999999999997665432 2446778899999887 9999999999999976432 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
.++..+|.+++..|+++.|...+.+++.+
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999886
No 232
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.33 E-value=0.049 Score=59.02 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
.+-.+.|.-..+ .|+.++|...+..||.++|+++.++...|...+.-++.-+|-.+|-+||.++|.|..|+.+..+..
T Consensus 117 ~~Al~~A~~~~~--~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 117 ILALKAAGRSRK--DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHHh--ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 344444444444 489999999999999999999999999999999999999999999999999999998887766654
Q ss_pred H
Q 005002 167 Q 167 (720)
Q Consensus 167 ~ 167 (720)
-
T Consensus 195 p 195 (472)
T KOG3824|consen 195 P 195 (472)
T ss_pred h
Confidence 3
No 233
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.33 E-value=0.26 Score=59.91 Aligned_cols=104 Identities=14% Similarity=0.047 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-----
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK----- 120 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~----- 120 (720)
+..+...|..++..|++++|...|.+++.+...... ....++.++|.+++.. |++..|...+.+++.+...
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~--G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ--GFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhcccc
Confidence 345567888899999999999999999987664322 2356778899999987 9999999999999986321
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 121 ---YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 121 ---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
..-.+..+|.++...|++++|...+.+++.+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 223466789999999999999999999988643
No 234
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.059 Score=58.22 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCC---
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV----SSK--- 120 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----dP~--- 120 (720)
|..+.+.|-.+|+.|+|+.|+..|+.|+..-..++ .+-+|+|.|+++- ++|..|+.+.+..++. .|.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp----llAYniALaHy~~--~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP----LLAYNLALAHYSS--RQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHhh--hhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 44677899999999999999999999999888887 4888999999996 9999999998887754 332
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 121 ----------------------YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 121 ----------------------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
-..|+..++-++++.|+++.|...+ +.+-|.+
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL---tDmPPRa 271 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL---TDMPPRA 271 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh---hcCCCcc
Confidence 1256778899999999999997664 3455543
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.27 E-value=0.05 Score=60.05 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-------
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY------- 121 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~------- 121 (720)
+...|+.+...+.|+++++.|++|+++..++.. ..-.+++.++..|.++ .+|++|+-+..+|+++--++
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l--~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL--KDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH--HhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 344899999999999999999999998776542 2246889999999998 99999999999999885432
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHH----HHHHHHHHHHHhhhhccChhHHhh
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNNVLSM--EPNNSS----ALEVLESVKQSMIEKGIDIDEKMK 181 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L--dP~n~~----A~~~L~~lk~~l~eka~a~~ek~~ 181 (720)
.-++|+++.+|..+|++-.|.+.++++.++ .-+|.. ...-++.+++..++...++..-+.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 246899999999999999999999998775 344433 344555666655555555543333
No 236
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.15 E-value=0.015 Score=65.88 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=75.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 90 SNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 90 ~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
-+-+.-+++- +.|+.|+..|.+||+++|+.+..+-.|+.++...++|-.|+.|+.+|++++|....+....+....++
T Consensus 8 k~ean~~l~~--~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 8 KNEANEALKD--KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhHHhhhccc--chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 3445555664 89999999999999999999999999999999999999999999999999999766555554444444
Q ss_pred hhhccChh--HHhhhcCCCCCCCCcchh
Q 005002 170 IEKGIDID--EKMKEFGLDSSGEAHGAL 195 (720)
Q Consensus 170 ~eka~a~~--ek~~~L~~~~P~~P~~~~ 195 (720)
++...+.. ++...+. |..|....
T Consensus 86 ~~~~~A~~~l~~~~~l~---Pnd~~~~r 110 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLA---PNDPDATR 110 (476)
T ss_pred HHHHHHHHHHHHhhhcC---cCcHHHHH
Confidence 43322222 3444444 55554433
No 237
>PLN03077 Protein ECB2; Provisional
Probab=95.12 E-value=0.27 Score=60.02 Aligned_cols=146 Identities=11% Similarity=0.029 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKL--LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS--KYSKAL 125 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L--~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP--~~~KAy 125 (720)
.+....+.|.+.|+.++|+..|++.+.. .|+.. .|..+-.++.+. |.+++|+..++...+..+ -+...|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-----T~~~ll~a~~~~--g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-----TFISLLCACSRS--GMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHhhc--ChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 4666777888999999999999987763 45444 455554556665 899999999998874432 245788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--hhccChhHHhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI--EKGIDIDEKMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~--eka~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
..+..+|.+.|++++|...+++. .+.|+-......+.-+.. -+ +.+....++..++. |..+..+..+..++..
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~-~~~~e~~e~~a~~l~~l~---p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRI-HRHVELGELAAQHIFELD---PNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhC---CCCcchHHHHHHHHHH
Confidence 89999999999999999998875 366664444444443322 11 11122234556677 8888888888888876
Q ss_pred Hhhh
Q 005002 204 KVKK 207 (720)
Q Consensus 204 k~kk 207 (720)
.|+-
T Consensus 704 ~g~~ 707 (857)
T PLN03077 704 AGKW 707 (857)
T ss_pred CCCh
Confidence 5543
No 238
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.06 E-value=0.072 Score=57.75 Aligned_cols=82 Identities=24% Similarity=0.188 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
++.|......+....+.|+.++|...|..|+.++|+++ .++..+|...-.- ++.-+|-.+|-+||.++|.+.+|
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p----~~L~e~G~f~E~~--~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP----QILIEMGQFREMH--NEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH----HHHHHHhHHHHhh--hhhHhhhhhhheeeeeCCCchHH
Confidence 35555666678888999999999999999999999999 4888888876553 78899999999999999999999
Q ss_pred HHHHHHHH
Q 005002 125 LLKRAQCY 132 (720)
Q Consensus 125 y~rrA~Ay 132 (720)
+.+|++..
T Consensus 187 LvnR~RT~ 194 (472)
T KOG3824|consen 187 LVNRARTT 194 (472)
T ss_pred Hhhhhccc
Confidence 99998765
No 239
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=95.03 E-value=0.026 Score=59.72 Aligned_cols=79 Identities=29% Similarity=0.356 Sum_probs=65.4
Q ss_pred ccceeeeeecCceEEEeccCC--CCHHHHHHHHHhhcC-CCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEE
Q 005002 259 VTKTVKLVFGDDIRWAQLPVN--CSIRLVRDIVRDRFP-SLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLY 335 (720)
Q Consensus 259 ~~~~~K~~~g~DiR~~~~~~~--~s~~~L~~~v~~kF~-~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~ 335 (720)
-+..||--||.+-||+.+|.+ .+|++....|+.... ..-.|+|-|-|.-|||..|++|+-|.-|++++ .-.+||+
T Consensus 17 ~~veVKSKFdaEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa--~PlLR~~ 94 (358)
T KOG3606|consen 17 STVEVKSKFDAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGDLLPINNDDNLHKALSSA--RPLLRLL 94 (358)
T ss_pred ceEEeeccccchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCceecccCchhHHHHhhcc--Cchhhhh
Confidence 356689999999999999765 488888888877763 24459999999999999999999999999986 3458888
Q ss_pred EEee
Q 005002 336 IAEV 339 (720)
Q Consensus 336 v~ev 339 (720)
|+.-
T Consensus 95 iQkr 98 (358)
T KOG3606|consen 95 IQKR 98 (358)
T ss_pred hhhh
Confidence 8754
No 240
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.97 E-value=0.29 Score=50.15 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=98.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE-VSSKYSKALLKRAQCY 132 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe-LdP~~~KAy~rrA~Ay 132 (720)
.+..+-+.=|.+.++..-.+.+...|... -++.+|.+...+ |+|.+|...|.+++. +--+++..++.++++.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-----nr~rLa~al~el--Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq 134 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQ-----NRYRLANALAEL--GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ 134 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHH-----HHHHHHHHHHHh--hhhhhhHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 45556667788888888999999999866 577889999998 999999999999987 4567899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhhhccC
Q 005002 133 KALNRLDFAFRDVNNVLSMEPN--NSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~--n~~A~~~L~~lk~~l~eka~a 175 (720)
..++++.+|...++.+.+.+|. .++....+.+++...+..+.+
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 9999999999999999999987 467778888888888765533
No 241
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.92 E-value=0.069 Score=60.77 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCcc----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-h-----
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKA-LKLLPKNHI----DVAYLRSNMAGCYMQMGLGEFPRAINECNLALE-V----- 117 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kA-L~L~P~~~~----d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe-L----- 117 (720)
..+....+..|-.|+|..|+...... |...|.... .+-.+++|+|.+++++ +.|.-++-.|.+||+ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~--~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL--GCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh--hhHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888899999988876532 222232111 1345789999999999 999999999999996 1
Q ss_pred ---CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 118 ---SS---------KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 118 ---dP---------~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.| .....+|+.|..|...|++-.|.+.|.++....-.|+..|..+..|-..-
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 22 24567999999999999999999999999999999999999998886644
No 242
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.84 E-value=0.096 Score=42.72 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
+++.+|..++++ |+|.+|..+++.+|+++|+|..|...+..+
T Consensus 3 ~lY~lAig~ykl--~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKL--GEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHh--hhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 678899999998 999999999999999999999886655443
No 243
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.82 E-value=0.21 Score=59.48 Aligned_cols=114 Identities=11% Similarity=-0.039 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
+...-+.+.+.|+.++|...|+...+..+-.+. ...|..+..+|.+. |++++|.+.+++. ...| +...|..+..
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~--G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~ 502 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGRE--GLLDEAYAMIRRA-PFKP-TVNMWAALLT 502 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhc--CCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence 555666677777777777777776653222111 12556666666665 7777777766543 1223 3445666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
++...|+++.|...+++++.++|++......+..++...+
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence 7777777777777777777777776655555555544443
No 244
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.4 Score=49.20 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS-KALLKR 128 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~-KAy~rr 128 (720)
.....+..++..+++++|+...+.++.. |.+....+.+-.++|.+.++. +.++.|+...+..-. +++. ..--.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~--~k~D~AL~~L~t~~~--~~w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQ--KKADAALKTLDTIKE--ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhcccc--ccHHHHHHHHh
Confidence 4567788899999999999999999974 444444567888999999997 999999876654422 3333 235578
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
|.++...|+-++|+..|.+++..++.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99999999999999999999999843
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.74 E-value=0.17 Score=57.92 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------------
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK------------ 120 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~------------ 120 (720)
+.-+.+.+.+++..-+..-.+||+++|+.+ .+|.-+|.=.. ....+|...+.+|++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCA----dAYILLAEEeA----~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCA----DAYILLAEEEA----STIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhh----HHHhhcccccc----cCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 345677899999999999999999999988 46665555221 2345566666665543210
Q ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhhhc
Q 005002 121 -------------YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN--NSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 121 -------------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~--n~~A~~~L~~lk~~l~eka 173 (720)
.+.+-.++|.|...+|+.++|++.++..++..|. +..++.+|-.+...++..+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 1345578899999999999999999999998886 5778888888888776544
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.71 E-value=0.047 Score=35.80 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK 120 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~ 120 (720)
.+|.++|.||+.+ ++++.|+..+.++++++|.
T Consensus 2 ~~~~~~a~~~~~~--~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKL--GDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHH--hhHHHHHHHHHHHHccCCC
Confidence 3677888888887 8888888888888887775
No 247
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.61 E-value=0.016 Score=63.45 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 101 LGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 101 ~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.|.++.||+.|..||+++|.....|-.||.+++.+++...|+++|..++.++|+...-....+..++.++.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 48999999999999999999999999999999999999999999999999999988777777777666653
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.42 Score=51.16 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKAL----KLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL----~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
.-+...|...++-||-+.|-.+|+..- .++.-.. ...++.|.+.+|.- .++|..|...+++.+..||.++.+
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~--~~~V~~n~a~i~lg--~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG--KIMVLMNSAFLHLG--QNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch--hHHHHhhhhhheec--ccchHHHHHHHhhccccCCCchhh
Confidence 344568899999999999999998443 3332211 24677777777766 499999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
..+.|.|++.+|+..+|++.++.++...|...-.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 9999999999999999999999999999986443
No 249
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.34 Score=52.58 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=87.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005002 57 KLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN 136 (720)
Q Consensus 57 ~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG 136 (720)
.+.+..+|.+||....--.+..|.+. ..++-+|.||+.. .+|..|..+|++.-.+.|...+.-+.-|..++.-+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~r----AgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSR----AGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 35778899999999999999999777 5889999999998 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
.|..|++...... +++..+...-.++..+.
T Consensus 93 i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 93 IYADALRVAFLLL----DNPALHSRVLQLQAAIK 122 (459)
T ss_pred ccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence 9999998765543 44556655555555553
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.30 E-value=0.19 Score=53.24 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
+..+++-|...++- |+|.+|+..++......|.. .++.+.++.+++..++|++|+..+++-+.+.|+++.+
T Consensus 34 ~~~LY~~g~~~L~~--gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQK--GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 46788889988886 99999999999999998864 6899999999999999999999999999999997653
No 251
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.63 Score=49.86 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDF 140 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryee 140 (720)
.+.+.+|.-.|++--...|..+ .+.+..|.|++++ ++|++|......||..+++++..+.++-.|-..+|.-.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~----~llnG~Av~~l~~--~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTP----LLLNGQAVCHLQL--GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred chhhhhHHHHHHHHhcccCCCh----HHHccHHHHHHHh--cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 4458899999998777555555 4889999999998 999999999999999999999999999999999999988
Q ss_pred HHHHHHH-HHHcCCCCHHH
Q 005002 141 AFRDVNN-VLSMEPNNSSA 158 (720)
Q Consensus 141 Al~d~ek-AL~LdP~n~~A 158 (720)
+...+-. ....+|+++-.
T Consensus 260 ~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 260 VTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHhcCCcchHH
Confidence 7766544 44567877643
No 252
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.33 Score=51.44 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEV--------SSK----------YSKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL--------dP~----------~~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
+.++...|.-++++ |+|.+|...|..||.. .|. ....|++.+.|++..|+|-+++.....
T Consensus 178 v~~l~q~GN~lfk~--~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKL--GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hHHHHHhhhhhhhh--ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 45777888889997 9999999999999743 232 345789999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHh
Q 005002 148 VLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 148 AL~LdP~n~~A~~~L~~lk~~l 169 (720)
.|..+|+|..|+-..++++...
T Consensus 256 iL~~~~~nvKA~frRakAhaa~ 277 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAV 277 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhh
Confidence 9999999999887777666544
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.21 E-value=0.075 Score=39.20 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+|.++|.+|..+|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566666666666666666666664443
No 254
>PRK10941 hypothetical protein; Provisional
Probab=94.13 E-value=0.49 Score=50.74 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
-+.+.=..+.+.++|+.|+...+..+.+.|+++ .-+--||.+|.++ +.+..|+.+++.-|+..|+.+.+-.-+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp----~e~RDRGll~~qL--~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDP----YEIRDRGLIYAQL--DCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 444555789999999999999999999999999 5777899999999 9999999999999999999998876665
Q ss_pred HHH
Q 005002 130 QCY 132 (720)
Q Consensus 130 ~Ay 132 (720)
...
T Consensus 257 ql~ 259 (269)
T PRK10941 257 QIH 259 (269)
T ss_pred HHH
Confidence 543
No 255
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.12 E-value=0.32 Score=45.56 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=77.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG---------LGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~---------~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
.+..+|++|+|-+|++..+..+...+++.. ...+|.--|.+++++. .--.-.+++.+.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 567899999999999999999998887663 1245555666655541 012346889999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+|.+|.-+-...-|++++.-.+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999999988888899999999999875
No 256
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=0.88 Score=48.07 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=85.5
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----
Q 005002 51 LKEEGNKLFQK-RDHEGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS----- 122 (720)
Q Consensus 51 lKeeGn~lfk~-GdyeeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~----- 122 (720)
+.+.|..|=.. .+++.||.+|+.|-+.....-.. ...++...|..-.++ ++|.+||..|++.....-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l--eqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL--EQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHHHhH
Confidence 33455555444 78999999999999887654321 224555555555565 899999999999877654432
Q ss_pred -H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHhhhhc
Q 005002 123 -K-ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALE--VLESVKQSMIEKG 173 (720)
Q Consensus 123 -K-Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~--~L~~lk~~l~eka 173 (720)
| .++..|.|++-..+.-.+...+++-..++|.....++ .|..+...+.+..
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d 248 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD 248 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence 3 3556789999999999999999999999999766553 5666666665444
No 257
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.98 E-value=0.082 Score=55.39 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=55.6
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 97 MQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 97 ~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
+....++++.|.+.|++||++-|.+...++|+|.-.+.-|+++.|.+.|++.|+++|.+-.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3334589999999999999999999999999999999999999999999999999998754
No 258
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.72 E-value=0.35 Score=43.41 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhh
Q 005002 107 AINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN--SSALEVLESVKQSMIE 171 (720)
Q Consensus 107 AI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n--~~A~~~L~~lk~~l~e 171 (720)
.+..+..+++.+|++..+.|.+|.++...|++++|+..+-.++..+|+. ..++..+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567788899999999999999999999999999999999999888764 7777777777776653
No 259
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.68 E-value=0.9 Score=54.26 Aligned_cols=88 Identities=7% Similarity=0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV--SSKYSKALLKRA 129 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL--dP~~~KAy~rrA 129 (720)
....+.|.+.|++++|...|++... |+ . ..|+.+..+|.+. |++++|+..+++.++. .| +...|..+-
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~--~d-~----~t~n~lI~~y~~~--G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll 433 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR--KN-L----ISWNALIAGYGNH--GRGTKAVEMFERMIAEGVAP-NHVTFLAVL 433 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC--CC-e----eeHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Confidence 3445555556666666666655432 21 1 2555555555554 5556666655555442 22 233344444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 005002 130 QCYKALNRLDFAFRDVNNVL 149 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL 149 (720)
.++...|.+++|+..|+...
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHH
Confidence 55555555555555555544
No 260
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.66 E-value=1.4 Score=55.51 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCCCH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLL--PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE----VSSKYS 122 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~--P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe----LdP~~~ 122 (720)
..+...-..|.+.|++++|+..|....... |+. ..|+.+..+|.+. |++++|...+..... +.|+ .
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-----vTYnsLI~a~~k~--G~~deA~~lf~eM~~~~~gi~PD-~ 579 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-----VVFNALISACGQS--GAVDRAFDVLAEMKAETHPIDPD-H 579 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhcCCCCCc-H
Confidence 355555666677777777777777665432 332 3666666666665 677777777666654 2343 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSME-PNNSSALEVLESVKQSM 169 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld-P~n~~A~~~L~~lk~~l 169 (720)
..|..+-.+|...|++++|+..|+.....+ +.+...+..+-......
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 556666666667777777777777666654 23444444444444333
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.46 E-value=0.57 Score=44.28 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
.....+...+..+...|+|+.|+..+.+++.++|.+- .+|..+-.||..+ |++..|+..|.+...
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E----~~~~~lm~~~~~~--g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE----EAYRLLMRALAAQ--GRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H----HHHHHHHHHHHHT--T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 4455667777888999999999999999999999988 5999999999998 999999999888743
No 262
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=0.67 Score=48.95 Aligned_cols=98 Identities=28% Similarity=0.232 Sum_probs=50.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------CCCHHHHHHHH
Q 005002 58 LFQKRDHEGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS------SKYSKALLKRA 129 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd------P~~~KAy~rrA 129 (720)
+|++.+..+|+.+..+||.+..+-... -+..|..+|..|-.- ..++++||.+|+.|-+.- ..--++++..|
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd-l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD-LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh-HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 444455555666666666555443211 123334445554442 355666666666665432 12234555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
.---.+++|..|+..|+++....-+|.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 656666666666666666655444443
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.21 E-value=1 Score=48.15 Aligned_cols=100 Identities=14% Similarity=-0.041 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
....+...+.+..+.|...|.+|+...+... .+|...|..-+++ .++.+.|...|+++++.-|.+...++....-
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~----~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTY----HVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T----HHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3344455555558999999999985444344 4788778875664 3777779999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
+..+|+.+.|...|++++..-|...
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999998877665
No 264
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.49 Score=50.68 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
.+.+..|+=..|+.- ++++.|.....+.|.++|.++.-+--+|.+|.++|.+.-|+.++...+...|+++.+-....+
T Consensus 180 l~rll~~lk~~~~~e--~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 180 LSRLLRNLKAALLRE--LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHh--hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 456777888888886 999999999999999999999999999999999999999999999999999999876554444
Q ss_pred H
Q 005002 165 V 165 (720)
Q Consensus 165 l 165 (720)
+
T Consensus 258 l 258 (269)
T COG2912 258 L 258 (269)
T ss_pred H
Confidence 3
No 265
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.06 E-value=1.4 Score=49.32 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=90.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYK 133 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~ 133 (720)
.+..+...|++++|......+++..-+.. +...+-.+..+++..-+...++.+...|+++-.++.+|+.++
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~ 339 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPR---------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL 339 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChh---------HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 45567788999999999999998654322 333444445689999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc
Q 005002 134 ALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 134 ~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~ 174 (720)
..+.+.+|-.+|+.+++..|... ....++.+...+++...
T Consensus 340 k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 340 KNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEE 379 (400)
T ss_pred HhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHH
Confidence 99999999999999999987654 45677777777775443
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.96 E-value=0.17 Score=37.27 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 89 RSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 89 ~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
|.++|.+|.++ |+|++|+..|+++|
T Consensus 2 l~~Lg~~~~~~--g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQ--GDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHC--T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 45556666655 56666666666644
No 267
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.87 E-value=2.2 Score=54.00 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCCH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-SKYS 122 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-P~~~ 122 (720)
...+...-+.+.+.|++++|...|.+.... .|+. ..|+.+-.+|.+. |++++|+..+....+.+ +.+.
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-----vTynaLI~ay~k~--G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-----ITVGALMKACANA--GQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCCh
Confidence 346777888888999999999999998763 3442 4778888888887 99999999999998876 4577
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhh
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSM--EPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~L--dP~n~~A~~~L~~lk~~l~ 170 (720)
..|..+..+|...|++++|+..|.+.... .|+ ......+-......+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G 663 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC
Confidence 88888999999999999999999998875 565 334444444433333
No 268
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.82 E-value=0.74 Score=40.77 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
..+....++|-.+|.+.+.++|+...+++|+..++.. ++-.++-.++.+|+.+ |.|.+++.+...=+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~--Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEW--GKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3566788999999999999999999999999998855 6777777888889998 9999999887776654
No 269
>PLN03077 Protein ECB2; Provisional
Probab=92.76 E-value=1.5 Score=53.54 Aligned_cols=110 Identities=6% Similarity=-0.009 Sum_probs=81.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKA 134 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~ 134 (720)
-..+.+.|++++|...|+......+-.+. ...|..+..+|.+. |++++|...+++. .+.|+ +..|..+-.++..
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~--G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~ 669 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRA--GKLTEAYNFINKM-PITPD-PAVWGALLNACRI 669 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhC--CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH
Confidence 34577888999999999988754433331 24778888888887 8999999887764 35555 4556566667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 135 LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 135 LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
-|+.+.|....+++++++|++......|..++...+
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 889999998899999999998888887776665444
No 270
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.72 E-value=0.19 Score=35.13 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSK 120 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~ 120 (720)
+++++|.||.++ |++++|+..++++++..|+
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 456777777776 7777777777777777765
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=1.7 Score=48.10 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CCC---CHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV-SSK---YSKALL 126 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL-dP~---~~KAy~ 126 (720)
.-..+..++.+|++.+|....++.|.-.|.+-. ++...-.+|+.+ |+...-...+.+.|-. +|+ +.-..-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll----a~kfsh~a~fy~--G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL----AVKFSHDAHFYN--GNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhh----hhhhhhhHHHhc--cchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 334566688999999999999999999898762 222222334444 7888888888888877 554 455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
..+.+++..|-|++|.+.-+++++++|.+.=+...+..+...-++.
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 7899999999999999999999999999988888877777655433
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.30 E-value=1.8 Score=43.48 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCH--
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS--KYS-- 122 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP--~~~-- 122 (720)
....+.+.|+-+++.|+++.|+..|.++........ ....++.++-.+.+-. ++|..+..+..+|-.+-. .+.
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-~~id~~l~~irv~i~~--~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-HKIDMCLNVIRVAIFF--GDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhccchHHH
Confidence 345788999999999999999999999888655433 3455666777776666 899999999999866532 222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 123 --KALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 123 --KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
+.....|.+++..++|..|-..|-.++.
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 2344467788888999999888766653
No 273
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.94 E-value=1.6 Score=53.20 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=79.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 005002 56 NKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE-VSSKYSKALLKRAQCYKA 134 (720)
Q Consensus 56 n~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe-LdP~~~KAy~rrA~Ay~~ 134 (720)
-.....++|..|+....+.++.-|+.. .+..--|..+.++ |.+++|. .|-.++. .-+++-..+--+-.||..
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~--gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRL--GKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRD 89 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHh--cCchhHH-HHHhhhccCCCCchHHHHHHHHHHHH
Confidence 345667889999999999999999877 5777778888998 8999999 5555555 445677788888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 135 LNRLDFAFRDVNNVLSMEPNNSSALEVL 162 (720)
Q Consensus 135 LGryeeAl~d~ekAL~LdP~n~~A~~~L 162 (720)
++++++|...|++++..+|+ ......+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 99999999999999999998 4444333
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.59 E-value=0.75 Score=51.15 Aligned_cols=99 Identities=24% Similarity=0.284 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-h-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-D-----VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS------ 118 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d-----~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd------ 118 (720)
+...|..+-+.+||++|+.+-.+|.++-..... | +..+.+.++.++..+ |....|.+.|+.|.++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~--G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL--GRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHhCCh
Confidence 345566677888999999999999988665431 2 456777888888886 99999999999997653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 119 SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 119 P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
|.+...+.-+|.+|...|+.+.|..-|+.|...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 446677888999999999999999999999864
No 275
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.44 E-value=1.9 Score=49.67 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 005002 65 EGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNR-LDFAFR 143 (720)
Q Consensus 65 eeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGr-yeeAl~ 143 (720)
..-+..|+.|+...+.+. .+|.+...-.-+. +.|.+.-..|..+|..+|+++..+..-|.=.+..+. .+.|..
T Consensus 88 ~rIv~lyr~at~rf~~D~----~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDV----KLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence 445677999999998877 5888766555553 679999999999999999999999999998888887 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 144 DVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 144 d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
.+.++|..+|+++..+...=+...
T Consensus 162 lflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 162 LFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred HHHHHhhcCCCChHHHHHHHHHHH
Confidence 999999999999998876555443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.14 E-value=5.1 Score=42.75 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--C-C---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV--S-S--- 119 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL--d-P--- 119 (720)
..+..+..-+..+.+.|+++-|.....++..+.+........+..-.|..+... |+..+|+......+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~--g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ--GEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhcccc
Confidence 445677888899999999999999999999877433211124666667777775 8999999988888771 1 0
Q ss_pred ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 120 ----------------------------KYSKALLKRAQCYKAL------NRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 120 ----------------------------~~~KAy~rrA~Ay~~L------GryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
...++++.+|.-...+ +.+++++..|..++.++|....++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1246777888888888 899999999999999999999999888888
Q ss_pred HHHh
Q 005002 166 KQSM 169 (720)
Q Consensus 166 k~~l 169 (720)
...+
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7765
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.98 E-value=3.1 Score=44.45 Aligned_cols=106 Identities=19% Similarity=0.117 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----------------------------cchHHHHHHHHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALK-LLPKN-----------------------------HIDVAYLRSNMAGCYMQ 98 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~-L~P~~-----------------------------~~d~a~l~~NrAa~y~k 98 (720)
....+.+..++..|+..+|+......+. ..... ....+.++.-+|.....
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3456678888999999999999988887 22211 01235666666666555
Q ss_pred c----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHcCCC
Q 005002 99 M----GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRL-----------------DFAFRDVNNVLSMEPN 154 (720)
Q Consensus 99 L----~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGry-----------------eeAl~d~ekAL~LdP~ 154 (720)
+ ..+.++.++..|..|++++|.+.++++..|..+..+-.. ..|+..|-+++.+.|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 4 458899999999999999999999999999888665332 3377888888888777
No 278
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.90 E-value=2.7 Score=48.35 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
.-|.---.++++..|...|.+||..+..++ .+|...+.|-|+. .....|...+++|+.+-|.--+.+|..-..-
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~i----tLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNI----TLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334444568889999999999999999998 5999999999996 8999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 133 KALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 133 ~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
..+|+...|...|++=+...|+...
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHH
Confidence 9999999999999999999998654
No 279
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.24 E-value=2.2 Score=38.33 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH
Q 005002 67 AMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--SKALLKRAQCYKALNRL 138 (720)
Q Consensus 67 Al~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--~KAy~rrA~Ay~~LGry 138 (720)
.+..+++++..+|++. .+.+.+|.+++.. |+|+.|++.+-.++..++++ ..+--.+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~--g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAA--GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHT--T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4667889999999998 5999999999996 99999999999999999987 34444444445555543
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.99 E-value=2.3 Score=48.93 Aligned_cols=104 Identities=15% Similarity=0.045 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY----SKALLKRAQCYKALN 136 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~----~KAy~rrA~Ay~~LG 136 (720)
..+...|...........|+.. ..+...|..+... |+.++|+..+++++.....+ .-.++-+|.|+..+.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~----lfl~~~gR~~~~~--g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA----LFLFFEGRLERLK--GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHh--cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 4456778888888888888877 5788888888886 99999999999999655443 347899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHhh
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSALEV-LESVKQSMI 170 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~~~-L~~lk~~l~ 170 (720)
+|++|..+|.+.++.+.=....... .+-|...++
T Consensus 320 ~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 9999999999999977655444443 344444443
No 281
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.88 E-value=5.8 Score=45.79 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=89.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--SKALLKRAQCYKALNR 137 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--~KAy~rrA~Ay~~LGr 137 (720)
...|.+.+...|+.+|++.|-..-..+.+|.-.|..-... .+...|....-.||-..|.+ .+.|. ..-.++++
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq--~~l~~ARkiLG~AIG~cPK~KlFk~YI---elElqL~e 452 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ--LNLTGARKILGNAIGKCPKDKLFKGYI---ELELQLRE 452 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH--cccHHHHHHHHHHhccCCchhHHHHHH---HHHHHHhh
Confidence 4678899999999999999977655566777666666664 79999999999999999864 23333 34567889
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 138 LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 138 yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
++.....|++-|...|.|-.++...+.+...+++-.
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999998543
No 282
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=89.75 E-value=1.3 Score=42.41 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK------------YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~------------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
.+..|..++..-.++..|.|++|...|.+|++..-. +.-+|..++.++..||+|++++....++|..
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 356777777777777679999999999999987533 3457888999999999999999988888864
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.71 E-value=12 Score=39.80 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=82.7
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC------Cc----chHHHHHHHHHHHHHHcCCCCHH
Q 005002 37 FDEDTAMFISMSQELKEEGNKLFQKR-DHEGAMLKYEKALKLLPK------NH----IDVAYLRSNMAGCYMQMGLGEFP 105 (720)
Q Consensus 37 ~d~d~~~lik~A~~lKeeGn~lfk~G-dyeeAl~~Y~kAL~L~P~------~~----~d~a~l~~NrAa~y~kL~~gdye 105 (720)
.+++... ..+..+.+-|..++.++ +|+.|+...++|+++.+. .. +.+..++..++.+|+.. +.++
T Consensus 26 ~~~~~~~--~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~--~~~~ 101 (278)
T PF08631_consen 26 LDPDMAE--ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEW--DTYE 101 (278)
T ss_pred CCcHHHH--HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcC--CChH
Confidence 3444444 88999999999999999 999999999999999522 11 12577888999999986 5544
Q ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 106 RAINECNLALEV----SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 106 eAI~d~~kALeL----dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
.. .-|..+++. -|+.+..++..=.++...++.+++...+.+.+.--+
T Consensus 102 ~~-~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SV-EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HH-HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 33 335555443 477777775555666668999999999999887544
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.63 E-value=19 Score=35.98 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+.+........++.+++...+.-.--+.|..+. +-.--|..++.. |+|.+|+..++.+.+-.|..+-+--.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e----~~~~~~~l~i~r--~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE----LDLFDGWLHIVR--GDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHh--CCHHHHHHHHHHHhccCCCChHHHHH
Confidence 457788888999999999999999988889999884 666677888886 99999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
++.|+..+|+.+==. +-..++... .|+.+......+...-
T Consensus 84 lA~CL~~~~D~~Wr~-~A~evle~~-~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 84 LALCLYALGDPSWRR-YADEVLESG-ADPDARALVRALLARA 123 (160)
T ss_pred HHHHHHHcCChHHHH-HHHHHHhcC-CChHHHHHHHHHHHhc
Confidence 999999999865221 233344444 4777777666665543
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=8.1 Score=41.37 Aligned_cols=107 Identities=15% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CC
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMGLGEFPRAINECNLALEV-----SS 119 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL-----dP 119 (720)
.|..+-.-++.+....+|++|-....+|++...++... .+..|-..+...-.+ ..+.++...+++|..+ .|
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~--~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKEL--SKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhCCc
Confidence 34555666666777899999999999999776665531 244455555555555 7899999999999876 35
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 120 KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 120 ~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
+-.-.-+-+|-=....-++++|+..|++++.+--.+
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 555444555555566778999999999999875443
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.27 E-value=1.6 Score=39.04 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=27.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcc-----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 58 LFQKRDHEGAMLKYEKALKLLPKNHI-----DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P~~~~-----d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
..+.|+|.+|++.+.+.+........ ....+..|+|.++..+ |++++|+..+++||++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~--G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF--GHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 34556666666666665554433221 1123334444444443 4444444444444443
No 287
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.04 E-value=0.85 Score=33.27 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
.+++|+|.+|..+ |+|++|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQ--GRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHC--T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--hhcchhhHHHHHHHHH
Confidence 4556666666665 6666666666666554
No 288
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=5.7 Score=46.75 Aligned_cols=109 Identities=19% Similarity=0.096 Sum_probs=86.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH-----
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR----- 128 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr----- 128 (720)
..-.+...++...|+.....++..+|.+.+ ++.|++.+.... ...+.-++..+..+....|++...+..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~L~~ale~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCP----AVQNLAAALELD-GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccch----HHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence 455566778888899999999999999984 999999998886 2344445555556999999988776666
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 129 -AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 129 -A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
|..+..+|+..++...+.++..+.|.++.....+-....
T Consensus 148 ~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 148 LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 888899999999999999999999999776666555533
No 289
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=5.5 Score=42.95 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=95.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLD 139 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGrye 139 (720)
+...-..|+..-..+|.++|.+. ++|.-|=.|+-.| ..+..+-+...+..++-+|.|...+..|-.+...+|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANY----TVWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 44556889999999999999999 6888888888777 578889999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 140 -FAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 140 -eAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
.-+.....++..+..|-.++.-...+.+..+.
T Consensus 130 ~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred cchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 88999999999999999999999998887753
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.97 E-value=1.1 Score=32.74 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 122 SKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 122 ~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999875
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=3 Score=46.19 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKL-LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L-~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
.++---..+|-.|+...-...+.+.|-. +|+-|. .++++--.|.|++.+ |-|++|...+++|+++||.+.=+...+
T Consensus 139 a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~-~sYv~GmyaFgL~E~--g~y~dAEk~A~ralqiN~~D~Wa~Ha~ 215 (491)
T KOG2610|consen 139 AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC-YSYVHGMYAFGLEEC--GIYDDAEKQADRALQINRFDCWASHAK 215 (491)
T ss_pred hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH-HHHHHHHHHhhHHHh--ccchhHHHHHHhhccCCCcchHHHHHH
Confidence 4444556788889999988999988866 444442 234555567778887 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 005002 129 AQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ek 147 (720)
+-+++..|++.++.+...+
T Consensus 216 aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 216 AHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhcchhhhHHHHHHh
Confidence 9999999999999887654
No 292
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.31 E-value=15 Score=42.36 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchH---------------------------------------
Q 005002 46 SMSQELKEEGNKLFQKRD-HEGAMLKYEKALKLLPKNHIDV--------------------------------------- 85 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~Gd-yeeAl~~Y~kAL~L~P~~~~d~--------------------------------------- 85 (720)
..+.-+..-+..+++.|. -++|+.....++...|.+..-.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 445666667777888887 5667777777776666544100
Q ss_pred ---HHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HH
Q 005002 86 ---AYLRSNMAGC-YMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN----SS 157 (720)
Q Consensus 86 ---a~l~~NrAa~-y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n----~~ 157 (720)
+.+-+-++.+ |+-. +|+|.++.-++.=..++.| .+.+|-.+|.|++...+|++|..++.. +-|++ ..
T Consensus 457 i~e~eian~LaDAEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dsk 531 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSK 531 (549)
T ss_pred ccHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHH
Confidence 1122222222 2222 4999999999999999999 899999999999999999999988764 44542 34
Q ss_pred HHHHHHHHHHHh
Q 005002 158 ALEVLESVKQSM 169 (720)
Q Consensus 158 A~~~L~~lk~~l 169 (720)
.+..+..|++.+
T Consensus 532 vqKAl~lCqKh~ 543 (549)
T PF07079_consen 532 VQKALALCQKHL 543 (549)
T ss_pred HHHHHHHHHHhh
Confidence 445555555544
No 293
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=87.13 E-value=6.2 Score=42.16 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=77.4
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--H-HHH
Q 005002 51 LKEEGNKLFQ-KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS--K-ALL 126 (720)
Q Consensus 51 lKeeGn~lfk-~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~--K-Ay~ 126 (720)
+..-|..-+. .++.+.|...|+.+++..|.+. .+|......++.+ ++...|...+++++..-|... + .|-
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~----~~~~~Y~~~l~~~--~d~~~aR~lfer~i~~l~~~~~~~~iw~ 111 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDP----DFWLEYLDFLIKL--NDINNARALFERAISSLPKEKQSKKIWK 111 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H----HHHHHHHHHHHHT--T-HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHh--CcHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 4445555455 6777779999999999999988 3666666777776 999999999999999877654 3 344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
+...-=...|+++.....++++..+.|.+........
T Consensus 112 ~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 112 KFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455556679999999999999999999665544333
No 294
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.60 E-value=4.5 Score=50.49 Aligned_cols=118 Identities=9% Similarity=0.113 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM-----GLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL-----~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+....+.+...+.|+.|+..|++.-.-.|.-.+.. .+.+..|.+.+.. ++..+.+|+..+++. .-.|.-|--|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY-EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEY 555 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHH
Confidence 44456778888999999999999999999766422 2444445554432 112577777777764 3356777889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+..|.+|..+|+|++-++.|.-|++.-|.++..-.....+-.++.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999887766666655554
No 295
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.36 E-value=2.3 Score=44.12 Aligned_cols=62 Identities=15% Similarity=-0.092 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 107 AINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 107 AI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
|+.+|.+|+.+.|++...|..+|..+...|+.=.|+-+|-|++...-..+.|..+|..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888887766668888888887766
No 296
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.90 E-value=9.1 Score=46.96 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
..-.|-.+++.|++++|.... +++...+.+.. ..+--+-.||..+ +++++|...|.+++..+|+ -+.++.+-.
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~---~tLq~l~~~y~d~--~~~d~~~~~Ye~~~~~~P~-eell~~lFm 118 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLL-EALYGLKGTDD---LTLQFLQNVYRDL--GKLDEAVHLYERANQKYPS-EELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHH-hhhccCCCCch---HHHHHHHHHHHHH--hhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence 345688899999999999555 55555554432 4666677899998 9999999999999999999 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
||.+.+.|..=-+.--+..+..|+++-.....-.+.
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 999999998877776667778899876555444443
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.77 E-value=20 Score=37.66 Aligned_cols=107 Identities=22% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc---CCC--CHHHHHHHHHHHHHhCCC
Q 005002 50 ELKEEGNKLFQ----KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM---GLG--EFPRAINECNLALEVSSK 120 (720)
Q Consensus 50 ~lKeeGn~lfk----~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL---~~g--dyeeAI~d~~kALeLdP~ 120 (720)
.....|..++. ..|+.+|...|.+|....-... +.+..+++.+|..- ..- +...|+..+.+|-...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 44556666665 4588888888888887643321 13466777777651 001 3336777777777665
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 121 YSKALLKRAQCYKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
++.+.+++|.+|.. -.++.+|...|.++..... ..+...+.
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 78888888877755 3478888888888887765 55555555
No 298
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=85.67 E-value=3 Score=36.78 Aligned_cols=66 Identities=9% Similarity=0.202 Sum_probs=48.5
Q ss_pred EeccCCCCHHHHHHHHHhhcCC-CCceeEEee-CCCCCeeeecCchHHHHHHHhhcCCCceEEEEEeeCC
Q 005002 274 AQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYK-DQEGDLVTITTTDELRFVEMLFNSQSFLRLYIAEVSP 341 (720)
Q Consensus 274 ~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYk-DedGDlVtitsd~dl~~A~~~~~~~~~~rL~v~ev~p 341 (720)
..+|.++|..+|..++...|.. ....+|.|+ |.+|..+...++++- .+...+.....+|+|...+|
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~--~L~~y~~~dg~~i~V~D~~p 85 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDA--TLGSYGIKDGMRIHVVDTNP 85 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSS--BCCHHT-STTEEEEEEE-T-
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCcc--EeecCCCCCCCEEEEEeCCC
Confidence 4579999999999999999953 455899999 777777777766544 33444556669999998887
No 299
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.52 E-value=2.8 Score=40.93 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 51 LKEEGNKLFQKRD---HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 51 lKeeGn~lfk~Gd---yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
..+.+-.+.+..+ -.+.+..++..++ ..++..+-.+.+.+|..++++ ++|+.++.+++..|+.+|+|..|.-.
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRl--keY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRL--KEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHH--hhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3444555554443 5678888888776 222333446778899999998 99999999999999999999988654
Q ss_pred H
Q 005002 128 R 128 (720)
Q Consensus 128 r 128 (720)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 4
No 300
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.40 E-value=1.1 Score=51.54 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CCCCcc-----hHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALK-L--------LPKNHI-----DVAYLRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~-L--------~P~~~~-----d~a~l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
.+..+.+.|-++|+.|.|.-++.+|.+||+ . .|.... ..-.+.+|.|..|+.+ |+.-.|.+++.
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~--grPl~AfqCf~ 359 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS--GRPLLAFQCFQ 359 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc--CCcHHHHHHHH
Confidence 344556788889999999999999999996 1 111100 1235889999999998 99999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH
Q 005002 113 LALEVSSKYSKALLKRAQCYKA 134 (720)
Q Consensus 113 kALeLdP~~~KAy~rrA~Ay~~ 134 (720)
++...--.+|..|+|+|.|.+.
T Consensus 360 ~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999999875
No 301
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.19 E-value=4.8 Score=43.28 Aligned_cols=80 Identities=24% Similarity=0.274 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK 123 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K 123 (720)
+.+....++ ..+...++++.|+..-.+.+.++|.++ .-+.-||.+|.++ |.+.-|+.+++..++..|+.+.
T Consensus 180 l~rll~~lk---~~~~~e~~~~~al~~~~r~l~l~P~dp----~eirDrGliY~ql--~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 180 LSRLLRNLK---AALLRELQWELALRVAERLLDLNPEDP----YEIRDRGLIYAQL--GCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHH---HHHHHhhchHHHHHHHHHHHhhCCCCh----hhccCcHHHHHhc--CCchhhHHHHHHHHHhCCCchH
Confidence 334444444 568889999999999999999999998 4667899999998 9999999999999999999988
Q ss_pred HHHHHHHHH
Q 005002 124 ALLKRAQCY 132 (720)
Q Consensus 124 Ay~rrA~Ay 132 (720)
+-.-++...
T Consensus 251 a~~ir~~l~ 259 (269)
T COG2912 251 AEMIRAQLL 259 (269)
T ss_pred HHHHHHHHH
Confidence 876665443
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.73 E-value=19 Score=42.50 Aligned_cols=107 Identities=23% Similarity=0.212 Sum_probs=82.1
Q ss_pred HHHHHHHHHHc----C-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 51 LKEEGNKLFQK----R-DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG-LGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 51 lKeeGn~lfk~----G-dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~-~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
....|..|++. . ++..|+..|.+|-.+... .+.+++|.||+.-. ..++.+|..+|..|... .++.|
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHH
Confidence 44677888773 3 788999999999987544 36788999999841 14678999999999774 68999
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 125 LLKRAQCYKAL----NRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 125 y~rrA~Ay~~L----GryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
++++|.||..= .+...|..+|.++-..+ ++.+...+..+..
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 99999999753 58999999999999887 5555555555443
No 303
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.68 E-value=2.5 Score=49.67 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=75.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLD 139 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGrye 139 (720)
.+|+..+|+.+|..|+-+.|....+ +.+..+|.++.++ |...+|--....|+.-.|.....+|-+|.+|..++.|.
T Consensus 225 ~~G~~~~A~~Ca~~a~hf~~~h~kd--i~lLSlaTiL~Ra--G~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N 300 (886)
T KOG4507|consen 225 IKGEPYQAVECAMRALHFSSRHNKD--IALLSLATVLHRA--GFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYN 300 (886)
T ss_pred HcCChhhhhHHHHHHhhhCCccccc--chhhhHHHHHHHc--ccccchhheeehhccCCccccccceeHHHHHHHHhhhh
Confidence 4788888888888888888775543 4667788888887 77777777777778777777777888999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHH
Q 005002 140 FAFRDVNNVLSMEPNNSSAL 159 (720)
Q Consensus 140 eAl~d~ekAL~LdP~n~~A~ 159 (720)
..+..|..+++.+|....+.
T Consensus 301 ~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 301 HSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred hhhhhhhhhhccCcchhHHH
Confidence 99999999998888864433
No 304
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.66 E-value=8.1 Score=44.84 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 005002 44 FISMSQELKEEGNKL----FQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS 119 (720)
Q Consensus 44 lik~A~~lKeeGn~l----fk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP 119 (720)
.+..+..+..+|... ++..........+-.++...+.+. ...+...+|.|..++ |+.++||+.+...++..|
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~--~~y~KrRLAmCarkl--Gr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV--LVYAKRRLAMCARKL--GRLREAIKMFRDLLKEFP 290 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch--hhhhHHHHHHHHHHh--CChHHHHHHHHHHHhhCC
Confidence 345556666555543 444344444444444443333322 245778899999998 999999999999998877
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 120 K--YSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 120 ~--~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
. +...++++-.||..++.|.++...+.+-
T Consensus 291 ~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 291 NLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4 5678999999999999999998887774
No 305
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.57 E-value=1.3 Score=46.63 Aligned_cols=61 Identities=25% Similarity=0.226 Sum_probs=54.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 005002 56 NKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS 122 (720)
Q Consensus 56 n~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~ 122 (720)
..+++.+|++.|.+.|.+|+.+.|... ..|+.+|....+. |+++.|...|.+.|+++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~----~gwfR~g~~~eka--g~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWA----AGWFRLGEYTEKA--GEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhh----hhhhhcchhhhhc--ccHHHHHHHHHHHHcCCcccc
Confidence 346788999999999999999999877 5899999998887 999999999999999999653
No 306
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.55 E-value=3.9 Score=36.48 Aligned_cols=52 Identities=13% Similarity=0.324 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 102 GEFPRAINECNLALEVSSK---------YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~---------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
++|..|++.+.+.++.... ..-+++++|.++..+|++++|+..+++++.+-.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8999999988888766431 246889999999999999999999999998743
No 307
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.90 E-value=18 Score=40.84 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=48.5
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhCCCC
Q 005002 52 KEEGNKLFQ---KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM-------GLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 52 KeeGn~lfk---~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL-------~~gdyeeAI~d~~kALeLdP~~ 121 (720)
...|..+.+ .|+.++|+..+..++.......+ ..++-+|.+|-.+ .....++||..|.++.+++|++
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~---d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDP---DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 455666777 89999999999997665554443 4666666665443 2346789999999999999764
No 308
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.74 E-value=9.3 Score=43.32 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC---
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY-KALNR--- 137 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay-~~LGr--- 137 (720)
.-.++-+.+-..||..+|+.. .+|+.|..++.+.+..++..=+..|+++|+.||.|..++..|-.+. .....
T Consensus 89 ~~ld~eL~~~~~~L~~npksY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 356777888889999999988 6999999999987555689999999999999999888765544444 33333
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 138 LDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 138 yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
..+-+.+..+++.-++.|-.|+.....+...+
T Consensus 165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 67788889999999999999999999888766
No 309
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.26 E-value=1.6 Score=33.34 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..|.++|.+.+..++|+.|+.+|.++|.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788899999999999999999998875
No 310
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.05 E-value=14 Score=41.99 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=72.8
Q ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005002 58 LFQKRDHEGAMLKYEKALKL---LPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYK 133 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L---~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~ 133 (720)
....||++.|+...+..... .++..+ .++.++...+..... .+...|..+...++++.|+.+.+-..-+.+|.
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld---adp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD---ADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 34567777777666544322 122111 245666666666655 58999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 134 ALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 134 ~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
..|+...+-..++.+.+.+|.-..
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHH
Confidence 999999999999999999886443
No 311
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.55 E-value=22 Score=38.90 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005002 68 MLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL----------GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNR 137 (720)
Q Consensus 68 l~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~----------gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGr 137 (720)
...|++.++-+|.+.. +|..+....-.+.. .-.+.-+..+++||+.+|++...++.+=.+...+.+
T Consensus 5 ~~el~~~v~~~P~di~----~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 5 TAELNRRVRENPHDIE----AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHHhCcccHH----HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 3468888999998884 55555544333200 124677889999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 138 LDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 138 yeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
-+....-+++++..+|++...+...-..
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999999999999988877654443
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.20 E-value=26 Score=35.05 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
...+.....+-+.. ++.+.+...+...--+.|..+..-..-|..+...|++.+|+..++.+..-.|..+-+...+..|
T Consensus 10 v~gLie~~~~al~~--~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 10 VGGLIEVLSVALRL--GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 44555556666665 7888888877777778999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 005002 166 KQSMIEK 172 (720)
Q Consensus 166 k~~l~ek 172 (720)
+..+++.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 9888643
No 313
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.30 E-value=29 Score=39.07 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
..+.....++..+|..++|..|...|...+...|.... ...+.+++.+|..-..-+|.+|.+.++..+.
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566777888999999999999999999986554442 3567777777776655789999999887765
No 314
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.14 E-value=8.7 Score=39.84 Aligned_cols=62 Identities=23% Similarity=0.190 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005002 67 AMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKA 134 (720)
Q Consensus 67 Al~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~ 134 (720)
|+.+|.+|+.+.|.+. ..|+.+|..+... ++.-.|+=+|-++|-..--++.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G----~p~nQLAvl~~~~--~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG----NPYNQLAVLASYQ--GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS----HHHHHHHHHHHHT--T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC----Ccccchhhhhccc--cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999999 6999999999986 999999999999997665568888888888877
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.04 E-value=16 Score=42.94 Aligned_cols=108 Identities=15% Similarity=0.023 Sum_probs=83.0
Q ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCcchHHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHH
Q 005002 51 LKEEGNKLFQ-----KRDHEGAMLKYEKALK-------LLPKNHIDVAYLRSNMAGCYMQMG--LG-EFPRAINECNLAL 115 (720)
Q Consensus 51 lKeeGn~lfk-----~GdyeeAl~~Y~kAL~-------L~P~~~~d~a~l~~NrAa~y~kL~--~g-dyeeAI~d~~kAL 115 (720)
....|.+++. .+|.+.|+.+|..|.. .. ++ .+.+.+|.||++-. .. ++..|+..+.+|-
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----ccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 3344555553 4689999999999987 22 22 36788999999831 23 7889999999998
Q ss_pred HhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 116 EVSSKYSKALLKRAQCYKALN---RLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 116 eLdP~~~KAy~rrA~Ay~~LG---ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
.+. ++.+.+++|.||..-. ++..|..+|..|... ++..+...+..|...
T Consensus 321 ~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 321 ELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred hcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 764 7889999999998876 678999999988754 778888888888763
No 316
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.88 E-value=5.9 Score=29.79 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHcCCCC
Q 005002 123 KALLKRAQCYKALNRLDFAFRD--VNNVLSMEPNN 155 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d--~ekAL~LdP~n 155 (720)
+.++.+|-.+...|+|++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567778888888888888888 44777777764
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.86 E-value=23 Score=37.71 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=72.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CC---cchHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh----CC---C-----
Q 005002 58 LFQKRDHEGAMLKYEKALKLLP-KN---HIDVAYLRSNMAGCYMQMGLG-EFPRAINECNLALEV----SS---K----- 120 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P-~~---~~d~a~l~~NrAa~y~kL~~g-dyeeAI~d~~kALeL----dP---~----- 120 (720)
..++||++-|...|.|+=.+.+ .+ ....+..++|.|...... + +|+.|+...++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~--~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSK--KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 4678999999999999987662 22 234688999999999986 7 999999999999887 22 1
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHcCCCCHHHH
Q 005002 121 --YSKALLKRAQCYKALNRLDFAFR---DVNNVLSMEPNNSSAL 159 (720)
Q Consensus 121 --~~KAy~rrA~Ay~~LGryeeAl~---d~ekAL~LdP~n~~A~ 159 (720)
....+..++.+|...+.++...+ .++.+-.-.|+.+...
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 23467778999988887764433 3333333456655544
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.08 E-value=20 Score=38.51 Aligned_cols=100 Identities=15% Similarity=0.024 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---C
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---Y 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~ 121 (720)
-.|..+-..|..+-....+.++..+|++|..+.-.+. ++.+..-..+|.=.+.- .+.++|+..|.+++.+--. .
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len--v~Pd~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN--VKPDDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhccchH
Confidence 3444444555555555556666666666665554322 12223333333333332 5666666666666544211 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
...+-..++.|..+.+|++|-..+.+
T Consensus 147 ~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 147 QMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 12233445556666666665554444
No 319
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=75.58 E-value=5.7 Score=43.72 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 005002 70 KYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK-RAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 70 ~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r-rA~Ay~~LGryeeAl~d~ekA 148 (720)
.|.++....|+++ .+|.-.++...+. +.|.+.-..|..+|..+|.++..|.. -+.-|...++++.+...|.++
T Consensus 95 ~~~R~tnkff~D~----k~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 95 ELYRSTNKFFNDP----KIWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKG 168 (435)
T ss_pred eeehhhhcCCCCc----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence 4555555667766 5777665544444 89999999999999999999998876 566778889999999999999
Q ss_pred HHcCCCCHHHHHHHHHHH
Q 005002 149 LSMEPNNSSALEVLESVK 166 (720)
Q Consensus 149 L~LdP~n~~A~~~L~~lk 166 (720)
|.++|+++..|-..-+..
T Consensus 169 lR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 169 LRMNSRSPRIWIEYFRME 186 (435)
T ss_pred hccCCCCchHHHHHHHHH
Confidence 999999999887655544
No 320
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.41 E-value=16 Score=37.83 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK--NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS- 122 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~--~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~- 122 (720)
+.|=-+...|+......-+..|+..|.+|+..... ...+...+.+-+|..+.++ |++++|+..+.+++...-.+.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl--g~~~eA~~~fs~vi~~~~~s~~ 200 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL--GNYDEAKRWFSRVIGSKKASKE 200 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHcCCCCCCc
Confidence 44444444444444444478899999999977654 3334567888899999998 999999999999998654332
Q ss_pred HHHHHHHHHH
Q 005002 123 KALLKRAQCY 132 (720)
Q Consensus 123 KAy~rrA~Ay 132 (720)
..+..+|+-+
T Consensus 201 ~~l~~~AR~~ 210 (214)
T PF09986_consen 201 PKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHHH
Confidence 4566666543
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.13 E-value=40 Score=33.52 Aligned_cols=86 Identities=15% Similarity=0.004 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+.+.........++.++-....-.--+.|+.+. +..--+..++.. |+|.+|+..++...+-.+..+-+--.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e----~d~~dg~l~i~r--g~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE----LDMFDGWLLIAR--GNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc----cchhHHHHHHHc--CCHHHHHHHHHhhhccCCCchHHHHH
Confidence 344555556666688899988888877778888884 555667777876 99999999999998888888888888
Q ss_pred HHHHHHHcCCHH
Q 005002 128 RAQCYKALNRLD 139 (720)
Q Consensus 128 rA~Ay~~LGrye 139 (720)
++.|+..+|+.+
T Consensus 84 ~A~CL~al~Dp~ 95 (153)
T TIGR02561 84 LALCLNAKGDAE 95 (153)
T ss_pred HHHHHHhcCChH
Confidence 899999999864
No 322
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.80 E-value=15 Score=41.71 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----C----C
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS----S----K 120 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd----P----~ 120 (720)
..+.+.|.-|..-|+++.|+..|.++-....... -.+..+.|.-.+-..+ ++|.....+.++|..-- . -
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k-hvInm~ln~i~VSI~~--~nw~hv~sy~~~A~st~~~~~~~~q~v 227 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK-HVINMCLNLILVSIYM--GNWGHVLSYISKAESTPDANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH-HHHHHHHHHHHHHHhh--cchhhhhhHHHHHHhCchhhhhHHHhc
Confidence 3566788889999999999999999777665533 3456777777777777 99999999999997751 1 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVL 149 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL 149 (720)
.++.....|.++..+++|..|...|-.+-
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667778999999999999998876553
No 323
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=74.75 E-value=77 Score=36.30 Aligned_cols=94 Identities=20% Similarity=0.072 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
...+++...-.|+|++|...|+--+. +|..- ++--||....-...|.++-|+++..+|-+.-|.-+=+..-.-.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-----llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETR-----LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-----HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 44578888899999999999976554 66543 3333333332223599999999999999999998877777778
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 005002 131 CYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~ 150 (720)
.....|+++.|++.++....
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHhcCChHHHHHHHHHHHH
Confidence 88899999999999887665
No 324
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=74.73 E-value=15 Score=32.41 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=50.0
Q ss_pred ceEEEe--ccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEEEEeeCC
Q 005002 270 DIRWAQ--LPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLYIAEVSP 341 (720)
Q Consensus 270 DiR~~~--~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~v~ev~p 341 (720)
..++.. +|.++|..+|.+++...|.. ....+|-|.|.+|..|..-++++-. ++..+...-.+|+|+..+|
T Consensus 11 ~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~--L~~y~~~dg~~IhVvD~~p 83 (84)
T cd01789 11 DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDAL--LGSYPVDDGCRIHVIDVSG 83 (84)
T ss_pred CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccE--eeeccCCCCCEEEEEeCCC
Confidence 356666 89999999999999999942 3458887778777777654343332 3444556668899988777
No 325
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.93 E-value=7.9 Score=32.56 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
+..|..+...|..+=+.|+|++|+.+|.+|+.+.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999998654
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.06 E-value=31 Score=38.61 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------h-----CCC---------------CHHHH
Q 005002 75 LKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE---------V-----SSK---------------YSKAL 125 (720)
Q Consensus 75 L~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe---------L-----dP~---------------~~KAy 125 (720)
|...|.+. ..+..++.++.+. |++..|...+++||= . ++. ...++
T Consensus 33 l~~~PyHi----dtLlqls~v~~~~--gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 33 LQKNPYHI----DTLLQLSEVYRQQ--GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHCCCcH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 45567666 4888889998886 899999999999862 1 111 23688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPN-NSSALEV 161 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~-n~~A~~~ 161 (720)
++....+.+.|.+.-|++.++-.+++||. |+-....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll 143 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL 143 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 89999999999999999999999999999 6654433
No 327
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.55 E-value=27 Score=41.36 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005002 63 DHEGAMLKYEKALKLLPKNHIDVAYLRSN-MAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 63 dyeeAl~~Y~kAL~L~P~~~~d~a~l~~N-rAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeA 141 (720)
.-.-|+..|...+.++|.++. .+..+ ++..+..+ +....++-....+|..+|.+..++.++|.+.+..|..-.+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~---llla~~lsi~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPE---LLLAAFLSILLAPL--ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred chhHHHHHHHccCccCCCCHH---HHHHHHHHhhcccc--ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 334477888888888888884 22222 56666665 8888888899999999999999999999999999988888
Q ss_pred HHHHHH-HHHcCCCCHHHHHHHHHHHH
Q 005002 142 FRDVNN-VLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 142 l~d~ek-AL~LdP~n~~A~~~L~~lk~ 167 (720)
+..+.. +....|+|..+..-+-.+++
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence 777666 89999999988877744333
No 328
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.03 E-value=6.1 Score=44.89 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 89 RSNMAGCYMQMGLGEFPRAINECNLALEVS---------SKYSKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 89 ~~NrAa~y~kL~~gdyeeAI~d~~kALeLd---------P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
...+..++..+ |+|..|++..+- |+++ +.+...+|..|.||+.++||.+|++.|...|.
T Consensus 125 ligLlRvh~LL--GDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLL--GDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhc--cCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455557776 999999985443 3332 34677899999999999999999999998875
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.95 E-value=4.5 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.104 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777888888888888777654
No 330
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=21 Score=39.00 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 92 MAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 92 rAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
-+.-.+.. +++..|...+..++...|.+..+.+.++.||...|+.+.|...+..
T Consensus 140 ~~~~~~~~--e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEA--EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred Hhhhhhhc--cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34445554 9999999999999999999999999999999999999998876653
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.34 E-value=22 Score=38.68 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..+|..++..+... ++++.++...++.+.++|-+-++|.++=.+|+..|+...|+..|++.-.+
T Consensus 153 ~~~l~~lae~~~~~--~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIAC--GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 56777778888776 88999999999999999999999999999999999999999888876653
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.73 E-value=14 Score=29.18 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788899999999999999988884
No 333
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.37 E-value=68 Score=37.55 Aligned_cols=98 Identities=21% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCCC-----
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE-VSSKY----- 121 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe-LdP~~----- 121 (720)
+.-....|.....-+.|+.|...|..|+++...-. ..+.+..|+|..|+.. ++- +++.++++ +.|.|
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d-l~a~~nlnlAi~YL~~--~~~----ed~y~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID-LQAFCNLNLAISYLRI--GDA----EDLYKALDLIGPLNTNSLS 439 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH-HHHHHHHhHHHHHHHh--ccH----HHHHHHHHhcCCCCCCcch
Confidence 44556678888889999999999999999764422 3578888999999986 442 23444444 34542
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005002 122 -----SKALLKRAQCYKALNRLDFAFRDVNNVLSME 152 (720)
Q Consensus 122 -----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld 152 (720)
...+|-.|.-.+..+++.+|...+.+.|++.
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2468888999999999999999999999886
No 334
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=69.81 E-value=5 Score=36.39 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=39.7
Q ss_pred eeecCceEEEe---ccCCC-CHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhh
Q 005002 265 LVFGDDIRWAQ---LPVNC-SIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLF 326 (720)
Q Consensus 265 ~~~g~DiR~~~---~~~~~-s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~ 326 (720)
++||.|+-..+ +|++- ||.=|--.+.+||| ..+|.+.|.|-+++--. +++-++|....
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp-~~~f~~~YiDi~~p~~~---~~~~~~a~~I~ 62 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYP-DQPFEFTYIDIENPPEN---DHDQQFAERIL 62 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-T-TS-EEEEEEETTT-------HHHHHHHHHHH
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCC-CCceEEEEEecCCCCcc---HHHHHHHHHHH
Confidence 47899988887 46653 89999999999998 67999999999987543 67888887765
No 335
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.75 E-value=11 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
++..|..+...|...=..|+|++|+..|..|+...
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999988654
No 336
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=68.53 E-value=58 Score=42.32 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeA 141 (720)
|.-+.-...|++|..++... .+|..++-+|.+. +.+++|.+.++.-++.--.-.+.|.+.|..++..++-+.|
T Consensus 1511 G~eesl~kVFeRAcqycd~~-----~V~~~L~~iy~k~--ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY-----TVHLKLLGIYEKS--EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHh--hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHH
Confidence 34455566677777765433 3777777777776 7777787777777776666677777777777777777777
Q ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHHhh
Q 005002 142 FRDVNNVLSMEPN--NSSALEVLESVKQSMI 170 (720)
Q Consensus 142 l~d~ekAL~LdP~--n~~A~~~L~~lk~~l~ 170 (720)
...+.+||+.-|. +.........+.-..+
T Consensus 1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 7777888777777 5555555555555554
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=68.20 E-value=7.6 Score=29.66 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVS 118 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd 118 (720)
.+|..+|-+.+.. ++|.+|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~--e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLEN--ENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 3677778777775 88888888888888763
No 338
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.97 E-value=12 Score=32.97 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
...|..+..++..+=+.|+|.+|+.+|++||++.
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4567788888888888899888888888887643
No 339
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.86 E-value=29 Score=37.62 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005002 63 DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFP-RAINECNLALEVSSKYSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 63 dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdye-eAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeA 141 (720)
+..+-+.+.+..+.-.|+|. .+|..|-.+.-.+ |++. +-++.+..+|..+..|..|+..|--|+...+.|+.-
T Consensus 93 dL~~El~~l~eI~e~npKNY----QvWHHRr~ive~l--~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNY----QVWHHRRVIVELL--GDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHh--cCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 35667888889999999998 5888887777776 7888 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH--------HHHhhhhccChhHHhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 142 FRDVNNVLSMEPNNSSALEVLESV--------KQSMIEKGIDIDEKMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 142 l~d~ekAL~LdP~n~~A~~~L~~l--------k~~l~eka~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
+.+..+.|..|--|-.|+...=-+ -+.+-+.......+.+.+- |.+.+++.=+.+++..
T Consensus 167 L~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~v---P~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLV---PNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHh
Confidence 999999999887776666432111 1011111111223345555 7777777777777654
No 340
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.63 E-value=1.1e+02 Score=34.75 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
...-...+..+|..++|..|...|..++...+.... .....+.+++.+|..-..-+|.+|...++
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344455777899999999999999999987653221 24567788888888766678999999888
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.59 E-value=33 Score=35.64 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK----YSKALLKRAQCYKALNRLDFAF 142 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~----~~KAy~rrA~Ay~~LGryeeAl 142 (720)
+.+.+.+|..|.+ .+..+++..+.++|++.+. ++..+..++.+|+.+|+++.|.
T Consensus 141 ~elq~aLAtyY~k---rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYTK---RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4688888888887 5889999999999988643 5888899999999999998885
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=66.54 E-value=31 Score=42.49 Aligned_cols=100 Identities=21% Similarity=0.132 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCcch---------HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKAL-------KLLPKNHID---------VAYLRSNMAGCYMQMGLGEFPRAINECNL 113 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL-------~L~P~~~~d---------~a~l~~NrAa~y~kL~~gdyeeAI~d~~k 113 (720)
.+.+.+..+-..+|.+.|+++|+++- ++..+++.- .-.+|.--|...-. .|+.+.|+..|..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES--~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES--VGEMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc--ccchHHHHHHHHH
Confidence 45566666667788888888888753 111122210 02345555554444 4899999998888
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 114 ALEV---------------------SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 114 ALeL---------------------dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
|-.. ...+.-|-|.+|+-|+..|++-+|+..|.+|-.+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7532 2346678899999999999999999999988654
No 343
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.15 E-value=37 Score=40.74 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK------YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALE 160 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~ 160 (720)
.++-|-|.-++++ .+|..+++.|...+..-|. +.|..-.++.||..+.++|.|++.+.+|-+.+|.++-.+.
T Consensus 355 ~iLWn~A~~~F~~--~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 355 TLLWNTAKKLFKM--EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHhhHHHHHH--HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3555678888888 8999999999999987663 5677888999999999999999999999999999876544
Q ss_pred HH
Q 005002 161 VL 162 (720)
Q Consensus 161 ~L 162 (720)
..
T Consensus 433 ~~ 434 (872)
T KOG4814|consen 433 LM 434 (872)
T ss_pred HH
Confidence 33
No 344
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.13 E-value=13 Score=32.63 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
.+.|..+..++..+=+.|+|.+|+.+|..||.+.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999754
No 345
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=65.20 E-value=16 Score=42.75 Aligned_cols=74 Identities=18% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKAL---NRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~L---GryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
.....||.+|.+++..-|.....|.+++.+++.. |+.-.|++++..|+.++|....++-.|.++...+.....+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3568899999999999999999999999999885 5778899999999999999999999999998888755444
No 346
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.16 E-value=30 Score=33.80 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
-....+.++...+..|+|.-|+...+.++..+|+|..++..+..+...++...
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45667888888999999999999999999999999999999999999887544
No 347
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=63.83 E-value=85 Score=40.95 Aligned_cols=101 Identities=17% Similarity=0.012 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCcch---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLL-PKNHID---VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK 123 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~-P~~~~d---~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K 123 (720)
+.-+.+.-.-+.+.++.++|....++||.-. +....+ ...+|.|+=..| |.-+...+.|++|-+.+ +-.+
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-----G~eesl~kVFeRAcqyc-d~~~ 1531 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-----GTEESLKKVFERACQYC-DAYT 1531 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-----CcHHHHHHHHHHHHHhc-chHH
Confidence 3355555566677788888999999988654 443322 244555555555 44455666677776654 3456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
.|..+...|...+++++|.+.|+..++-.-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 7888888999999999998888888776543
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.38 E-value=83 Score=34.40 Aligned_cols=82 Identities=12% Similarity=-0.062 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHcCCHHH
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY---KALNRLDF 140 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay---~~LGryee 140 (720)
.+.-+..|++||+.+|++. .++..+-.++.++ .+-+....-++++|..+|+++..+..+-... ...-.++.
T Consensus 47 ~E~klsilerAL~~np~~~----~L~l~~l~~~~~~--~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE----RLLLGYLEEGEKV--WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHH
Confidence 5677889999999999776 4666566666676 6888889999999999999887655443332 33446788
Q ss_pred HHHHHHHHHHc
Q 005002 141 AFRDVNNVLSM 151 (720)
Q Consensus 141 Al~d~ekAL~L 151 (720)
.+..|.++|..
T Consensus 121 ~~~~y~~~l~~ 131 (321)
T PF08424_consen 121 VRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 349
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=62.82 E-value=87 Score=36.04 Aligned_cols=114 Identities=19% Similarity=0.164 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----chH-------HHHHHHHHHHHHHcCCC-----CHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH----IDV-------AYLRSNMAGCYMQMGLG-----EFPRAIN 109 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~----~d~-------a~l~~NrAa~y~kL~~g-----dyeeAI~ 109 (720)
.........|..+|..|+|.+|+..|+..|...|-.. .+. ..+.-..-.+.+.+... ..+....
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR 281 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence 3334455689999999999999999999998766322 111 11111111222222101 1122222
Q ss_pred HHHHH-----HHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 005002 110 ECNLA-----LEVSSKYSKALLKRAQC-YKALNRLDFAFRDVNNVLSMEPNNSSAL 159 (720)
Q Consensus 110 d~~kA-----LeLdP~~~KAy~rrA~A-y~~LGryeeAl~d~ekAL~LdP~n~~A~ 159 (720)
.++.| ..|.|.+...-+|.|.. .++.++|--|....++.|++.|....+.
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 22322 23345444444455443 4678999999999999999999886543
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.10 E-value=62 Score=36.24 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-C----CH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPK-NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS-K----YS 122 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~-~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP-~----~~ 122 (720)
..+......+-++|-|..|++...-.+.++|. ++. -+.+-+=...++ .++|+=-+..++....... + .|
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~---g~ll~ID~~ALr--s~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL---GVLLFIDYYALR--SRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc---hhHHHHHHHHHh--cCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 35566677888999999999999999999999 552 122222222233 4888888888887665322 1 23
Q ss_pred HHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHcCCC
Q 005002 123 KALLKRAQCYKALNRL---------------DFAFRDVNNVLSMEPN 154 (720)
Q Consensus 123 KAy~rrA~Ay~~LGry---------------eeAl~d~ekAL~LdP~ 154 (720)
.--|.++.|+..+++- +.|-..+.+|+...|.
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4568889999999998 8999999999998875
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.07 E-value=64 Score=37.74 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
-+--...+..||...|-.....+|+..|..+. .-.-++.++..+ |.|+.+..+..-+=.+-..-.++.-.+-+.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~----~i~l~~~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~ 366 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPV----LIQLRSVIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCch----hhHHHHHHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHHh
Confidence 33445667889999999999999999999883 555677888887 999999998887766656667788888889
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
+..+|++++|+......|.-+-.++.
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIEDEE 392 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccCChh
Confidence 99999999999888887765544444
No 352
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=61.98 E-value=51 Score=36.97 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHH---------------------HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC
Q 005002 43 MFISMSQELKEEGNKLFQKRDHE---------------------GAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL 101 (720)
Q Consensus 43 ~lik~A~~lKeeGn~lfk~Gdye---------------------eAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~ 101 (720)
.+|..+..+..++..+-.-|-|. .-...|.-...+.|. + ++-.|||.+..+.
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-P----vV~LNRAVAla~~-- 342 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-P----VVTLNRAVALAMR-- 342 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-C----eEeehHHHHHHHh--
Confidence 34566666666666555555552 222334433333343 3 3667888887765
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 102 GEFPRAINECNLALEV--SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 102 gdyeeAI~d~~kALeL--dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
.-...++...+..+.- =..|.-.+--+|..+..+|+.++|...|++++.+.++.........++-
T Consensus 343 ~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 343 EGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred hhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3345555544444332 1256777888999999999999999999999999998877766655543
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.44 E-value=2.3e+02 Score=33.84 Aligned_cols=121 Identities=11% Similarity=0.072 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--
Q 005002 46 SMSQELKEEGNKLF-QKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK-- 120 (720)
Q Consensus 46 k~A~~lKeeGn~lf-k~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~-- 120 (720)
..|......|..++ ...+++.|..+.++++.+...+.- .+-.+.+-++.+|.+. +...|+..++++|+.--.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~---~~~~a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT---NPKAALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhccC
Confidence 34667778888888 688999999999999998865321 2344556668888885 455599999999987654
Q ss_pred --CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHh
Q 005002 121 --YSKALLKRAQCY--KALNRLDFAFRDVNNVLSME--PNNSSALEVLESVKQSM 169 (720)
Q Consensus 121 --~~KAy~rrA~Ay--~~LGryeeAl~d~ekAL~Ld--P~n~~A~~~L~~lk~~l 169 (720)
...-.+++-++. ...+++..|+..++....+. ++++.+...+..+...+
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 333444443222 22379999999999988876 56666655544444433
No 354
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=61.10 E-value=19 Score=30.73 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
++..|..+...|..+=..|+|++|+..|..|++..
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45677888888888888999999999998888643
No 355
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.01 E-value=38 Score=35.79 Aligned_cols=110 Identities=18% Similarity=0.088 Sum_probs=61.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcc----h----HHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHh---CCCCHHHH
Q 005002 58 LFQKRDHEGAMLKYEKALKLLPKNHI----D----VAYLRSNMAGCYMQMGLGE-FPRAINECNLALEV---SSKYSKAL 125 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P~~~~----d----~a~l~~NrAa~y~kL~~gd-yeeAI~d~~kALeL---dP~~~KAy 125 (720)
+|-.|+|+.|+.....||+..-..|. . .+.-..+-|...... |. ++-.....-..|.- -|+-+.|-
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~a--g~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASA--GESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 45678999999999999988754442 0 122222223333332 22 22222111111211 25555554
Q ss_pred HH--HHHHHH---------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 126 LK--RAQCYK---------ALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 126 ~r--rA~Ay~---------~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+. .|..++ ..+++..|+..+++|+.++|+- .....+.++.+.+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 44 455552 3468889999999999999763 34555566666554
No 356
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=60.67 E-value=19 Score=30.67 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
++..|..+...|..+=..|+|++|+..|..|+...
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35677788888888889999999999999988653
No 357
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=59.78 E-value=1.6e+02 Score=35.71 Aligned_cols=63 Identities=22% Similarity=0.137 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
..-|..|-..|+.+.|...|++|+...=...++++.+|++-|..-+.- .+++.|+....+|..
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh--~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH--ENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh--hhHHHHHHHHHhhhc
Confidence 334444555555555555555555544333334455555555433332 455555555555543
No 358
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.68 E-value=2.1e+02 Score=29.63 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCCCHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA-LEVSSKYSKALLKR 128 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA-LeLdP~~~KAy~rr 128 (720)
.....|....++|+-..|+..|+.+-.-.|-....+-.+...-|..++- .|.|+....-.+.. -.-+|-...+.--+
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD--~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD--NGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc--cccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 3445677888889999999999887665443222222333333444443 58888776544332 12234344555567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 005002 129 AQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~ 150 (720)
|.+-++-|+|..|...|.....
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 8888899999999999987765
No 359
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=59.13 E-value=3.1 Score=42.98 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred ccceeeeeecCc--eEEEeccCCCCHHHHHHHHHhhcCC---------------------CCceeEEeeCCCCCeeeecC
Q 005002 259 VTKTVKLVFGDD--IRWAQLPVNCSIRLVRDIVRDRFPS---------------------LKGVLVKYKDQEGDLVTITT 315 (720)
Q Consensus 259 ~~~~~K~~~g~D--iR~~~~~~~~s~~~L~~~v~~kF~~---------------------~~~~~ikYkDedGDlVtits 315 (720)
....|||..... -|.|-|-.--+|.+|...+.+-|.. ...+.|-|.|.|||+..+-+
T Consensus 108 ~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD 187 (215)
T PF02309_consen 108 SRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGD 187 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecC
Confidence 356689988774 3556677777999999999999921 12478999999999998876
Q ss_pred c
Q 005002 316 T 316 (720)
Q Consensus 316 d 316 (720)
+
T Consensus 188 ~ 188 (215)
T PF02309_consen 188 V 188 (215)
T ss_dssp -
T ss_pred C
Confidence 6
No 360
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.95 E-value=1.5e+02 Score=31.02 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCCCcchH-----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CH--H
Q 005002 64 HEGAMLKYEKALKLLPKNHIDV-----------------AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK-YS--K 123 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~-----------------a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~-~~--K 123 (720)
..+|-..|.+++.......++. ...-..+|..+... +++++|+...+.+|....+ +. -
T Consensus 50 ~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~--~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 50 AQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEA--NNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccchhHHHHHH
Confidence 3467777777776553221110 12223344455554 8999999999999876543 23 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhhhccC
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPN-NSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~-n~~A~~~L~~lk~~l~eka~a 175 (720)
+-+|+|+++..+|.+|+|+..+...- +++ ........+.+....+++..+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHH
Confidence 56789999999999999998765432 111 123344555555555544433
No 361
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.89 E-value=2e+02 Score=33.05 Aligned_cols=123 Identities=12% Similarity=0.002 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHE-GAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG----------LGEFPRAINECNLA 114 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~Gdye-eAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~----------~gdyeeAI~d~~kA 114 (720)
..-..+...-...-..|.|+ +++..=.+.+..+|... ++|+-|=.++.... +.-.+.-+.....+
T Consensus 26 ~~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~----t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~ 101 (421)
T KOG0529|consen 26 GQLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFY----TVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESA 101 (421)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhh----hhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHH
Confidence 33344444444555667774 46666777777788766 56766666654420 12345566777889
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 115 LEVSSKYSKALLKRAQCYKALNR--LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 115 LeLdP~~~KAy~rrA~Ay~~LGr--yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
|..+|+..-+++.|.-++...+. +..=++.++++|+.||.|-.++....-+.......
T Consensus 102 L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 102 LKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99999999999999999998875 57788889999999999999999888887766543
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.82 E-value=1e+02 Score=30.72 Aligned_cols=71 Identities=11% Similarity=-0.059 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
.+.+++.......--+.|+.+..-..-|..+...|++.+|+..++.+..-.|..+-+...+..|...+++.
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 78888777776666788999999999999999999999999999999988888899999999999988753
No 363
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.03 E-value=1.1e+02 Score=34.47 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCC-------------------Cc-------chHHHHHHHHHHHHHHcCCC
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALK---LLPK-------------------NH-------IDVAYLRSNMAGCYMQMGLG 102 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~---L~P~-------------------~~-------~d~a~l~~NrAa~y~kL~~g 102 (720)
.+.|-.++-.|+|.+....+.-|-. .+.+ +. -++..++...|.-||.. .
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~--n 139 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLL--N 139 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHh--c
Confidence 3678888888888877666554331 1110 00 03467888899999997 9
Q ss_pred CHHHHHHHHHHHHHh------------------------CCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 103 EFPRAINECNLALEV------------------------SSKYS-----------KALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 103 dyeeAI~d~~kALeL------------------------dP~~~-----------KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
+++.|+-.+++|+.. +|+.. ..|.++..-|..-+++-.+..+|.+
T Consensus 140 D~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~ 219 (449)
T COG3014 140 DSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLS 219 (449)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999988888743 23322 2366678888888999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhh
Q 005002 148 VLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 148 AL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+|-..|++ +....+.++....+
T Consensus 220 ~lf~a~n~-dv~kg~~~~~e~~g 241 (449)
T COG3014 220 GLFYALNG-DVNKGLGYLNEAYG 241 (449)
T ss_pred HHhcccCc-cHhHHHHHHHHHhc
Confidence 99999998 77777777766553
No 364
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=56.81 E-value=56 Score=32.77 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 84 DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 84 d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
+...++..+|.-|.+. |++..|++.|.++.+.... -...+++.-++....+++......+.++-.+
T Consensus 34 sir~~~~~l~~~~~~~--Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 34 SIRMALEDLADHYCKI--GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567899999999998 9999999999999887654 3467888899999999999999999998876
No 365
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.77 E-value=22 Score=31.18 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
..|..+...|..+=+.|+|.+|+.+|.+||...
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456788888888999999999999988888643
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.17 E-value=31 Score=25.93 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 005002 50 ELKEEGNKLFQKRDHEGAMLK--YEKALKLLPKN 81 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~--Y~kAL~L~P~~ 81 (720)
.+...|-.++.+|+|++|+.. |.-+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 345567778888888888888 44777777653
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.00 E-value=23 Score=38.95 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+.+.+...+..|...|.+.+|+...++++.++|-+......|..++..+++..
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~i 330 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEI 330 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccch
Confidence 44667778999999999999999999999999999999999999999888643
No 368
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=55.87 E-value=24 Score=31.28 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=37.3
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCC-CceeEEeeCCCCCeeeecCchHH
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSL-KGVLVKYKDQEGDLVTITTTDEL 319 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~-~~~~ikYkDedGDlVtitsd~dl 319 (720)
.+++||.=.+--++.-|-. .|+.+|+.++.++|.-. .++.| +-++||-.| +|+|.
T Consensus 2 ~kp~kv~~~~r~~k~Gv~A-~sL~eL~~K~~~~l~~~~~~~~l-vL~eDGT~V---ddEey 57 (78)
T PF02017_consen 2 PKPFKVRNHDRSVKKGVAA-SSLEELLEKACDKLQLPEEPVRL-VLEEDGTEV---DDEEY 57 (78)
T ss_dssp -EEEEEEETTSSCEEEEEE-SSHHHHHHHHHHHHT-SSSTCEE-EETTTTCBE---SSCHH
T ss_pred CCcEEEecCCCCceEeEEc-CCHHHHHHHHHHHhCCCCcCcEE-EEeCCCcEE---ccHHH
Confidence 4677777666444444433 48999999999999644 56666 778999766 35554
No 369
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.37 E-value=36 Score=43.64 Aligned_cols=124 Identities=22% Similarity=0.202 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK----NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--- 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~----~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--- 118 (720)
..+....+.|......|.+.+|.. ..+++.+..+ -+++.+.+|..++..+.++ +++++|+..+.+|.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~--~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL--GDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--cchHHHHHhcccceeeechh
Confidence 567788889999999999999998 6677766552 2335668999999999998 99999999999886553
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhhh
Q 005002 119 -----SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM--------EPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 119 -----P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L--------dP~n~~A~~~L~~lk~~l~ek 172 (720)
|+...+|..++......++...|+..+.+++.+ .|.-...-.+++.+...+++.
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 456788999999999999999999999998875 344444445566665554443
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=55.26 E-value=40 Score=38.70 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--------CHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 89 RSNMAGCYMQMGLGEFPRAINECNLALEVSSK--------YSK----------ALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 89 ~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~--------~~K----------Ay~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
+-.-+.||.+ +.|..|+--|..||++..+ ++. .--.+..||+.+++.+.|+....+.+.
T Consensus 180 L~das~~yrq---k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 180 LKDASSCYRQ---KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 3334445554 7888888888888777432 111 123588999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhhh
Q 005002 151 MEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 151 LdP~n~~A~~~L~~lk~~l~ek 172 (720)
++|.+..-+..-+-|-+.+++.
T Consensus 257 lnP~~frnHLrqAavfR~LeRy 278 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERY 278 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHH
Confidence 9999887776666676666544
No 371
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.15 E-value=21 Score=31.37 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLP 79 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P 79 (720)
+.+|..+...|...=..|+|++|+..|..||++.-
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Confidence 35677888888888899999999999999997643
No 372
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=55.13 E-value=18 Score=31.97 Aligned_cols=61 Identities=31% Similarity=0.468 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHhhccccccccccccc-----------cHHHHHHHHHHHHhhhhhccCCCccccchhh
Q 005002 638 CLEVAVEKFELAGASPTDIAVMIKNHCSNETALEGFGF-----------KIDEIVQAWNEMYDAKRWQIGVPSFRLEPLF 706 (720)
Q Consensus 638 ~l~~avekf~~ag~~~~di~~~~knh~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (720)
.+.+|+.-..+..|++.||..+++. |+|| -+|.+....+.|++. .|.+.|+..|+.
T Consensus 11 ~~~ea~~l~~egvas~~~ID~~~~~---------~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~----~~~~~~~~~~~l 77 (97)
T PF00725_consen 11 LLNEAARLVEEGVASPEDIDRAMRY---------GLGFPMGPFELADLVGLDVVYHILEYLAAA----LGDRAFRPSPLL 77 (97)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHH---------HHTHSSTHHHHHHHHHHHHHHHHHHHHHHH----HCCGGGSS-HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH---------hCCCCCccchHHHHhCchHHHHHHHHHHHh----cCCCcCCchHHH
Confidence 4678888888888999999999975 3333 357778888888874 344577778887
Q ss_pred hccch
Q 005002 707 RRRVP 711 (720)
Q Consensus 707 ~~~~~ 711 (720)
++.+.
T Consensus 78 ~~mv~ 82 (97)
T PF00725_consen 78 KEMVE 82 (97)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 373
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=54.91 E-value=1.3e+02 Score=38.99 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcC----------------------
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMG---------------------- 100 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~---------------------- 100 (720)
-...+..|..|+.++..|+|.+|+..|..|+.+.-...+- .+.++=.++.|.+.+.
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 3667888999999999999999999999999877543321 2233333333322210
Q ss_pred ---------------------------------------CCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHc
Q 005002 101 ---------------------------------------LGEFPRAINECNLALEV----SSK--YSKALLKRAQCYKAL 135 (720)
Q Consensus 101 ---------------------------------------~gdyeeAI~d~~kALeL----dP~--~~KAy~rrA~Ay~~L 135 (720)
...+++|+.+|+++... .|. +..+.+|.++.+..+
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 12577888888888633 233 567888999998888
Q ss_pred C--------------------CHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhh
Q 005002 136 N--------------------RLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMI 170 (720)
Q Consensus 136 G--------------------ryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~ 170 (720)
. .-.++...+.+++.+...+ ......+..++..+|
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG 459 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLG 459 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcc
Confidence 8 8888888999888765432 344556677777766
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.45 E-value=38 Score=37.28 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 90 SNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 90 ~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
...|..|... |.+.+|++.|.++|.++|-+..-+..+-..|..+|+--.|...|++.
T Consensus 283 gkva~~yle~--g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEA--GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHc--CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556665 99999999999999999999999999999999999988888877764
No 375
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.70 E-value=24 Score=32.40 Aligned_cols=70 Identities=19% Similarity=0.377 Sum_probs=51.2
Q ss_pred eeecCceEEEe---ccCC-CCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEEEEe
Q 005002 265 LVFGDDIRWAQ---LPVN-CSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLYIAE 338 (720)
Q Consensus 265 ~~~g~DiR~~~---~~~~-~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~v~e 338 (720)
++||.|+.+++ +|.+ -||.=|.-.+.+||| .-+|.+.|.|--.+ -..+.|+.+|.....-.-.-.|.|++
T Consensus 8 ~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp-~~~F~~~YiDI~n~---~~e~~~~~~aekI~~dey~YPlivve 81 (106)
T COG4837 8 VVYGAEVICASCVNAPTSKDTYEWLEAALKRKYP-NQPFKYTYIDITNP---PLEDHDLQFAEKIEQDEYFYPLIVVE 81 (106)
T ss_pred EEecchhhhHHhcCCCcchhHHHHHHHHHhccCC-CCCcEEEEEEcCCC---ccHHHHHHHHHHHhcccccceEEEEc
Confidence 57999988877 4655 489999999999998 78899999985432 23568899998875333344555543
No 376
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.49 E-value=25 Score=30.71 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
++.+|..+..+|...=..|+|++|+..|..+|.+.
T Consensus 2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678888888999999999999999999998754
No 377
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.42 E-value=71 Score=33.57 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcC
Q 005002 65 EGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--SK----YSKALLKRAQCYKALN 136 (720)
Q Consensus 65 eeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--P~----~~KAy~rrA~Ay~~LG 136 (720)
...+..+++|+......... ...+...+|.-|+.+ |+|++|+..++.++..- .. ....+..+..|+..+|
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~--g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL--GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34556666666555433322 245667888999997 99999999999996542 12 2356778899999999
Q ss_pred CHHHHHHHHHHHH
Q 005002 137 RLDFAFRDVNNVL 149 (720)
Q Consensus 137 ryeeAl~d~ekAL 149 (720)
+.+..+...-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999887765554
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.81 E-value=95 Score=27.78 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 89 RSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK---ALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 89 ~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K---Ay~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
+.-.|.=++.. .+..+|+..+.+||+..++... ++-.+..+|...|+|.+++.+-.+=+.
T Consensus 9 ~ie~GlkLY~~--~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQ--NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhcc--chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444553 7889999999999998877654 555677889999999999887554443
No 379
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.74 E-value=56 Score=41.97 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLP----KNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--- 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P----~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--- 118 (720)
..+..+...+..+.+.+++++|+..-.+|.-+.. .+++.....|.|++...+.. ++...|+..+.+|+.+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~--~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV--KNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc--cCccchhhhHHHHHHhhccc
Confidence 3455677788889999999999999888875443 34555678999999988887 78999999999998763
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005002 119 -----SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSME 152 (720)
Q Consensus 119 -----P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld 152 (720)
|.-.-...+++..+..+++++.|+++.+.|++++
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444556788888999999999999999999854
No 380
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.26 E-value=29 Score=30.20 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
+..|..+..+|...=..|+|++|+..|..||+..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999988654
No 381
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=52.11 E-value=12 Score=41.88 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
+.+-..++.+.|..|+..-..+++.++... ..|+.++..|+.+ .++++|+.+...+....|++....-.+..+-
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t----ka~~Rr~~~~~~~--~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKT----KAHYRRGQAYKLL--KNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhC----cHHHHHHhHHHhh--hchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 344556666777777777777777666666 4999999999998 9999999999999999999876555544444
Q ss_pred HHcCC
Q 005002 133 KALNR 137 (720)
Q Consensus 133 ~~LGr 137 (720)
....+
T Consensus 354 ~~~~~ 358 (372)
T KOG0546|consen 354 QKKKQ 358 (372)
T ss_pred hHHHH
Confidence 43333
No 382
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=51.28 E-value=4e+02 Score=30.32 Aligned_cols=102 Identities=16% Similarity=0.004 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHH-
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLG------------EFPRAINECNLA- 114 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~g------------dyeeAI~d~~kA- 114 (720)
..+..|+.+|-.|||+-|+..|+-+.+-.-.+.. -.+.++--.|.|++.++.. -++.|+..|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 5667899999999999999999988874443331 0122233334444444211 123344444442
Q ss_pred ---HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 115 ---LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 115 ---LeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
......-.++.+..+.++...+.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111233567777788888999988888777776654
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.27 E-value=55 Score=37.39 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=60.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-----cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 56 NKLFQKRDHEGAMLKYEKALKLLPKN-----HIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 56 n~lfk~GdyeeAl~~Y~kAL~L~P~~-----~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
..+.-.|||..|+...+. |.+.... +.-.+++++..|-||+.| ++|.+|+..++..|-.--.....+..+.-
T Consensus 130 Rvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMl--rRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLML--RRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 445567999999887643 2222211 111247899999999999 99999999999987642221112222322
Q ss_pred HHHH-cCCHHHHHHHHHHHHHcCCC
Q 005002 131 CYKA-LNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 131 Ay~~-LGryeeAl~d~ekAL~LdP~ 154 (720)
-+-. .+..|.....+--++.+.|.
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 2322 34456666666677778885
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.07 E-value=77 Score=33.29 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
+.|..+|..|+|++|+..|+.+....-... .....+...+..|+.++ |+.+..+..+-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~--~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL--GDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 789999999999999999999976544322 12456788889999998 99999888776654
No 385
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.59 E-value=2.5e+02 Score=29.47 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM--GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN----- 136 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL--~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG----- 136 (720)
...|+..|.+|-... ++ .+..++|.+|..- ...++.+|+..|.+|-+... ..+.++++ +++.-|
T Consensus 171 ~~~A~~~~~~aa~~~--~~----~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 171 DKKALYLYRKAAELG--NP----DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHhHHHHHHHHHHhc--CH----HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchh
Confidence 347999999988776 33 5888999998772 13499999999999999877 88999999 777666
Q ss_pred ----------CHHHHHHHHHHHHHcCCC
Q 005002 137 ----------RLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 137 ----------ryeeAl~d~ekAL~LdP~ 154 (720)
+...|+..+..+....+.
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 778888888887766544
No 386
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=49.43 E-value=20 Score=31.39 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=25.8
Q ss_pred EEeeCCCCCee-eecCchHHHHHHHhhcCCCceEEEEEeeCCCCCCcccC
Q 005002 301 VKYKDQEGDLV-TITTTDELRFVEMLFNSQSFLRLYIAEVSPDQEPAYDG 349 (720)
Q Consensus 301 ikYkDedGDlV-titsd~dl~~A~~~~~~~~~~rL~v~ev~p~~e~~~~~ 349 (720)
|+=.|+||..+ .++..+-|++|.+. .|-+++|+|...|++-.
T Consensus 15 VrlI~~~g~~lGv~~~~eAl~~A~~~-------~lDLV~v~~~~~PPVcK 57 (76)
T PF05198_consen 15 VRLIDEDGEQLGVMSLREALRLAKEK-------GLDLVEVSPNADPPVCK 57 (76)
T ss_dssp EEEE-TTS-EEEEEEHHHHHHHHHHT-------T-EEEEEETTSSS-EEE
T ss_pred EEEECCCCcEeceEEHHHHHHHHHHc-------CCcEEEEcCCCCCCeEE
Confidence 44459999999 55555667676663 35558888988887644
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.84 E-value=52 Score=32.18 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005002 90 SNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRL 138 (720)
Q Consensus 90 ~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGry 138 (720)
..+|...+.- |+|.-|++.++.++..+|++..+...++.+|.++|.-
T Consensus 74 l~~A~~~~~~--gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 74 LERAQAALAA--GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHC--T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3444444443 7777777777777777777777777777777666543
No 388
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=47.79 E-value=1.5e+02 Score=36.42 Aligned_cols=79 Identities=28% Similarity=0.256 Sum_probs=58.4
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005002 418 YSEAMEDTVTSEEAQELFEMAADNFQEMAALAVFNWGNIHLSRARKRIFFPEDGLRESILAQVTVAHEWAKKEYAMAGMR 497 (720)
Q Consensus 418 ~~eale~~v~~~~a~~lf~~a~~kfqe~aa~a~fnwgnvhm~~ark~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~a~~k 497 (720)
|..||-+|-+.+.|-+|=..--| -.||+.||--.|--.++||..+.-.+=...|.++++|..+.-- -+.|.+|+..
T Consensus 595 y~q~l~dt~qd~ka~elk~sdgd---~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik-~elydkagdl 670 (1636)
T KOG3616|consen 595 YLQALMDTGQDEKAAELKESDGD---GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIK-GELYDKAGDL 670 (1636)
T ss_pred HHHHHHhcCchhhhhhhccccCc---cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHh-hHHHHhhhhH
Confidence 55688888888888777544333 3688999999999999999888666666778889888765421 2678888877
Q ss_pred HHH
Q 005002 498 YQE 500 (720)
Q Consensus 498 ye~ 500 (720)
||.
T Consensus 671 fek 673 (1636)
T KOG3616|consen 671 FEK 673 (1636)
T ss_pred HHH
Confidence 764
No 389
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=47.07 E-value=90 Score=27.50 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 140 FAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 140 eAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
+|+..+.+++.+.|+++.......++...+
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 333445555666788776555555555544
No 390
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.84 E-value=3.1e+02 Score=32.70 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------c-------h--------HHHHHHHHHHHHHHcCCCCHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-------I-------D--------VAYLRSNMAGCYMQMGLGEFP 105 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-------~-------d--------~a~l~~NrAa~y~kL~~gdye 105 (720)
+-.+.--|......+..+.|..++.+|++...+.. . + ...++...+.|.+-+ +++.
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~--~~~~ 378 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR--GDWS 378 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC--cCHH
Confidence 44555668888888888888888888885543211 1 0 134555666666665 9999
Q ss_pred HHHHHHHHHHHhC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 106 RAINECNLALEVS---S------KYSKALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 106 eAI~d~~kALeLd---P------~~~KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
.|......+.... | -.+..+|..|..+...|+.+.|+..|.
T Consensus 379 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 379 KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9998888776653 2 247789999999999999999999998
No 391
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=46.83 E-value=87 Score=34.11 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
...+......+...|+++.++...++.+.++|.+- .+|..+-..|++. |+...||..|.+.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~--g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVN--GRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHc--CCchHHHHHHHHHHH
Confidence 44556677888899999999999999999999988 4899999999997 999999998887644
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.97 E-value=2e+02 Score=35.94 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK----YS 122 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~----~~ 122 (720)
|+.---.|.....+|+++.|+..-+.++...|.+.. .++.++++.|.+.+-. |+|.+|+.....+.++.-. +.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~--G~~~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR--GELTQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh--chHHHHHHHHHHHHHHHHHcccHHH
Confidence 344445688888999999999999999999998764 4678999999999886 9999999999888877332 22
Q ss_pred --HHHHHHHHHHHHcC
Q 005002 123 --KALLKRAQCYKALN 136 (720)
Q Consensus 123 --KAy~rrA~Ay~~LG 136 (720)
-+.+-.+.++...|
T Consensus 536 ~~~~~~~~s~il~~qG 551 (894)
T COG2909 536 ALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 34455678888888
No 393
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=44.95 E-value=76 Score=26.16 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=35.3
Q ss_pred eeeeeecCceEEEeccCCCCHHHHHHHHHhhcC-CCCceeEEeeC
Q 005002 262 TVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFP-SLKGVLVKYKD 305 (720)
Q Consensus 262 ~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~-~~~~~~ikYkD 305 (720)
+|.|.+++...-+.++.+.|..+|...+..++. ......|.|..
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g 46 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKG 46 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCC
Confidence 577888888888889999999999999999983 12337788873
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.35 E-value=87 Score=31.30 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 103 EFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 103 dyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
.....++...+.+...| ++..|.+++.++..+|+.++|.....++..+-|.+.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 34455566677777778 688899999999999999999999999999999443
No 395
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=44.17 E-value=1.1e+02 Score=35.66 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA 114 (720)
...+.+.+.-+|.+|+|.++..+-.-..++.| .+ .+|--+|.|.+.- .+|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~----~~~RLlGl~l~e~--k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP----QAYRLLGLCLMEN--KRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH----HHHHHHHHHHHHH--hhHHHHHHHHHhC
Confidence 45677889999999999999999999999999 45 5888999999985 8999999866543
No 396
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=43.53 E-value=1.5e+02 Score=36.92 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLA----------LEVSSK----------YSKALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kA----------LeLdP~----------~~KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
..|+|.|.-+..- ++.+.|+++|+++ |.-+|. +.+.|-.-|.-++..|+.+.|+.+|.
T Consensus 859 ~Tyy~yA~~Lear--~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 859 NTYYNYAKYLEAR--RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhHHHHHHHHHhh--ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 4566766665554 8889999988875 233443 23344456888889999999999998
Q ss_pred HHHH
Q 005002 147 NVLS 150 (720)
Q Consensus 147 kAL~ 150 (720)
.|-.
T Consensus 937 ~A~D 940 (1416)
T KOG3617|consen 937 SAKD 940 (1416)
T ss_pred Hhhh
Confidence 7743
No 397
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=43.32 E-value=1.6e+02 Score=33.48 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHcCCCCHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEV----SSKYSKALLKRAQCYKA---LNRLDFAFRDVNNV-LSMEPNNSSA 158 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----dP~~~KAy~rrA~Ay~~---LGryeeAl~d~ekA-L~LdP~n~~A 158 (720)
.+..|+=.+|..+ .+|+.-|...+..-.+ -++.+..-+.+|.|+-+ .|+.+.|+..+..+ ....+.++++
T Consensus 142 div~~lllSyRdi--qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 142 DIVINLLLSYRDI--QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hHHHHHHHHhhhh--hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4556788888887 8999888877766555 23456667788899988 99999999999994 4567778999
Q ss_pred HHHHHHHHHHhh
Q 005002 159 LEVLESVKQSMI 170 (720)
Q Consensus 159 ~~~L~~lk~~l~ 170 (720)
.-.++++++.+-
T Consensus 220 ~gL~GRIyKD~~ 231 (374)
T PF13281_consen 220 LGLLGRIYKDLF 231 (374)
T ss_pred HHHHHHHHHHHH
Confidence 999999999774
No 398
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.12 E-value=1.9e+02 Score=34.03 Aligned_cols=105 Identities=9% Similarity=-0.018 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCC---
Q 005002 50 ELKEEGNKLFQKR--DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS---SKY--- 121 (720)
Q Consensus 50 ~lKeeGn~lfk~G--dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd---P~~--- 121 (720)
.+.-.+.-+...| +...+|.+.+..+...|.+- -.+..+..+|..++.- ..+.+.|..+.++|..+. |++
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~-veart~LqLg~lL~~y-T~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL-VEARTHLQLGALLLRY-TKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHcccccHHhh
Confidence 3333444444444 45555555555444444322 1244555556555543 456666666666665443 332
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 005002 122 -SKALLKRAQCYKALN-RLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 122 -~KAy~rrA~Ay~~LG-ryeeAl~d~ekAL~LdP~n~ 156 (720)
..++..++.+|.... .+..|...+++++++..+++
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 235555666666665 56666666666666655554
No 399
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.58 E-value=4.2e+02 Score=33.50 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----cchHHHHH--HHHHHHHH----------HcCCCCHHHH-
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN----HIDVAYLR--SNMAGCYM----------QMGLGEFPRA- 107 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~----~~d~a~l~--~NrAa~y~----------kL~~gdyeeA- 107 (720)
+.......++|-.+...|.|.+|++.|+.+|-..|-. ..+.+.+. ...+.-|. +|+..+...+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 3445566779999999999999999999999877732 22211111 11111111 1234455556
Q ss_pred -HHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 108 -INECNLALEVSSKYSK-ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEV 161 (720)
Q Consensus 108 -I~d~~kALeLdP~~~K-Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~ 161 (720)
+..|-.-..+.|-+.- ++...-.+++.+++|..|-....+.|++.|..+.|...
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 3444444566775544 44444567899999999999999999999988776543
No 400
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=41.64 E-value=5.1e+02 Score=31.77 Aligned_cols=105 Identities=11% Similarity=0.125 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc---------hH------HHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI---------DV------AYLRSNMAGCYMQMGLGEFPRAINE 110 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~---------d~------a~l~~NrAa~y~kL~~gdyeeAI~d 110 (720)
..|..+.+-|..-++..+++.|+...+.|... |.++. -. ..+|+-.+-.--.+ |-++.....
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~--gtfestk~v 499 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL--GTFESTKAV 499 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh--ccHHHHHHH
Confidence 44677888888888999999999999999864 54421 11 23444444444454 788888899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 111 CNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 111 ~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
|++.|++-=-.|....+.|.-+..-.-+++|.+.|++.+.|.|
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 9999999888899999999999999999999999999999864
No 401
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.45 E-value=1e+02 Score=25.86 Aligned_cols=59 Identities=24% Similarity=0.119 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINE 110 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d 110 (720)
...|..+|..|+|=+|-+..+......|....+....+.++|.++.+...|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45788999999999999999999976665543444455556665555445888877654
No 402
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=41.39 E-value=52 Score=38.51 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHhhcccccccccccccc-----------HHHHHHHHHHHHhhhhhccCCCccccch
Q 005002 636 EECLEVAVEKFELAGASPTDIAVMIKNHCSNETALEGFGFK-----------IDEIVQAWNEMYDAKRWQIGVPSFRLEP 704 (720)
Q Consensus 636 ~~~l~~avekf~~ag~~~~di~~~~knh~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (720)
-..+.+|+.-+.+.-|++.||..++++ |+||. +|.++...+.+|.. .|-|.||--|
T Consensus 423 ~~~~nEA~~ll~eGvas~~dID~a~~~---------g~G~P~GP~~~~D~~Gld~~~~~l~~l~~~----~~~~~~~p~~ 489 (503)
T TIGR02279 423 AMLANEAADAVLQGVASAQDIDTAMRL---------GVNYPYGPLAWAAQLGWQRILRVLENLQHH----YGEERYRPSS 489 (503)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHh---------CCCCCcCHHHHHHHhCHHHHHHHHHHHHHH----cCCCcCCcCH
Confidence 345788999999999999999999873 44443 78899999988874 2556778789
Q ss_pred hhhccch
Q 005002 705 LFRRRVP 711 (720)
Q Consensus 705 ~~~~~~~ 711 (720)
++++++.
T Consensus 490 ~L~~~v~ 496 (503)
T TIGR02279 490 LLRRRAL 496 (503)
T ss_pred HHHHHHH
Confidence 9988764
No 403
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=40.08 E-value=56 Score=33.97 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeA 107 (720)
....|. +|...|.++|+..|.++|++.+.+..--..++..+|.+|+++ ++++.|
T Consensus 144 q~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~--~~~e~A 197 (203)
T PF11207_consen 144 QYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL--KNYEQA 197 (203)
T ss_pred HHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh--cchhhh
Confidence 334444 455799999999999999998876322346889999999997 898877
No 404
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.83 E-value=71 Score=34.34 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHhhccccc---c-ccccccccHHHHHHHHHHHHhhhhhccCCCccccchhhhccc
Q 005002 636 EECLEVAVEKFELAGASPTDIAVMIKNHCSNE---T-ALEGFGFKIDEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRV 710 (720)
Q Consensus 636 ~~~l~~avekf~~ag~~~~di~~~~knh~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (720)
-..+.+|+.-..+..+++.||..+++..+--. - ..+.+| +|.++..++.||.. .|.|.|..-|++++++
T Consensus 198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G--ld~~~~~~~~l~~~----~~~~~~~p~~~l~~~v 270 (286)
T PRK07819 198 VPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG--LDTVKAIADSMYEE----FKEPLYAPPPLLLRMV 270 (286)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc--cHHHHHHHHHHHHH----cCCCCCCCCHHHHHHH
Confidence 34466777777777799999999986422111 0 012234 78899999999984 3556667667777654
No 405
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=37.83 E-value=39 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
+++++|.++... |++++|...++
T Consensus 3 a~~~la~~~~~~--G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQ--GDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHh
Confidence 556666666665 67777666543
No 406
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=37.72 E-value=97 Score=27.58 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=38.5
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHH
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDEL 319 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl 319 (720)
.+++||.=.+-.++.-|-. .|+.+|+.++..+|.-...-..=|-++||-.| +|+|.
T Consensus 2 ~kp~kV~~~~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeV---ddEeY 57 (78)
T cd01615 2 LRPFKVCDSDRSRKKGVAA-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEV---DDEEY 57 (78)
T ss_pred CCCEEEecCCCCeeEEEEc-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEE---ccHHH
Confidence 5677777666555555433 27999999999999743344445778999655 56665
No 407
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=37.12 E-value=1.3e+02 Score=29.26 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------ch----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-------ID----VAYLRSNMAGCYMQMGLGEFPRAINECNLA---- 114 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-------~d----~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA---- 114 (720)
.+-..|+.+++.+++-.|+-+|++|+.+-.+-. .| .+....|+|..+..+ |+-+=.+.+...|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~--gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQ--GDSDYELKYLQLASEKV 80 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHc--CChHHHHHHHHHHHHHH
Confidence 455689999999999999999999997654321 11 245566888888887 7777677766554
Q ss_pred HHhCCC
Q 005002 115 LEVSSK 120 (720)
Q Consensus 115 LeLdP~ 120 (720)
+.+-|.
T Consensus 81 ltLiPQ 86 (140)
T PF10952_consen 81 LTLIPQ 86 (140)
T ss_pred HHhccC
Confidence 555564
No 408
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.90 E-value=6.1e+02 Score=27.91 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCc-ch-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 49 QELKEEGNKLFQKR-DHEGAMLKYEKAL----KLLPKNH-ID-------VAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 49 ~~lKeeGn~lfk~G-dyeeAl~~Y~kAL----~L~P~~~-~d-------~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
..++..+..+..+. .+..+....+-++ .-.|... .. .+.....+-..+. .+++.+.+..+++.+
T Consensus 50 ~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L~~p~ad~~~~~~~~~~---~~~~~~Ll~~~E~sl 126 (301)
T TIGR03362 50 DTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRLAPPPADRVADYQELLA---QADWAALLQRVEQSL 126 (301)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 34455556666654 3456666655544 3334211 10 1222222222332 378899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 116 EVSSKYSKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 116 eLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
..+|-+...++..+.++..+| |+.+...+..
T Consensus 127 ~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~ 157 (301)
T TIGR03362 127 SLAPFWLDGQRLSAQALERLG-YAAVAQAIRD 157 (301)
T ss_pred HhCchhhHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 999999999999999999999 5555544443
No 409
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.45 E-value=3.2e+02 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHh
Q 005002 102 GEFPRAINECNLALEV 117 (720)
Q Consensus 102 gdyeeAI~d~~kALeL 117 (720)
|+|+.++.+|.+|..+
T Consensus 100 ~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 100 GDYDQAINDYKKAKSL 115 (182)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5666666666665544
No 410
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.00 E-value=8.1e+02 Score=30.98 Aligned_cols=104 Identities=15% Similarity=0.002 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-----IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK 120 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-----~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~ 120 (720)
....-....+=.+....+|.+|-....++-...|... ...+..-.-+|.+.... ++++.|+..++.++..=|.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~--~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR--GDPEEAEDLARLALVQLPE 490 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccc
Confidence 3333444556667778899999888888777666521 12355556666766664 9999999999999998774
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 121 -----YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 121 -----~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..-++...|.+..-.|+|+.|+.....+.++
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 3457888999999999999999999988887
No 411
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.68 E-value=1.8e+02 Score=34.41 Aligned_cols=62 Identities=15% Similarity=0.003 Sum_probs=50.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
+.+.|.+--..|.++|...|+++. +|..-|.-.+.. .-+.+.|...+.++|+.+|++++.+.
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~d----LWI~aA~wefe~-n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPD----LWIYAAKWEFEI-NLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCch----hHHhhhhhHHhh-ccchHHHHHHHHHHhhcCCCChHHHH
Confidence 344488888899999999999994 888777777766 24589999999999999999998653
No 412
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.88 E-value=2.2e+02 Score=33.17 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=69.7
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch-------HHHHHHHHHHHHHHcC----CCCHHHHHHH
Q 005002 42 AMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID-------VAYLRSNMAGCYMQMG----LGEFPRAINE 110 (720)
Q Consensus 42 ~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d-------~a~l~~NrAa~y~kL~----~gdyeeAI~d 110 (720)
..-+-++..+.+.|..++....|.+|+...-.|-++.....+. .+.+-.-.-.||+.+. ..+-+.-+.-
T Consensus 157 ~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~r 236 (568)
T KOG2561|consen 157 QKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVR 236 (568)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHH
Confidence 3345788899999999999999999999877776554432211 1233334456777761 1223333334
Q ss_pred HHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 111 CNLALEVS-------------SKY------SKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 111 ~~kALeLd-------------P~~------~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
|.+.+... |.. ...++.-|...+..|+-++|...++.+...
T Consensus 237 a~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 237 ARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44443321 121 233445589999999999999999987653
No 413
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.74 E-value=87 Score=34.30 Aligned_cols=68 Identities=24% Similarity=0.197 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHhhcccccccccc-------ccccHHHHHHHHHHHHhhhhhccCCCccccchhhhccc
Q 005002 638 CLEVAVEKFELAGASPTDIAVMIKNHCSNETALEG-------FGFKIDEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRV 710 (720)
Q Consensus 638 ~l~~avekf~~ag~~~~di~~~~knh~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (720)
.+.+|+.-.+..|+++.||..++++-.---++.-| .| +|.++...+.||.. .|-|.|+..|++++++
T Consensus 193 ~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~G--ld~~~~~~~~l~~~----~~~~~~~p~~~l~~~v 266 (314)
T PRK08269 193 AMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGG--CDILYYASRYLAGE----IGPDRFAPPAIVVRNM 266 (314)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhh--HHHHHHHHHHHHHH----hCCCCCCCCHHHHHHH
Confidence 46678888888999999999999764432222222 23 67788888888763 3456676667776655
Q ss_pred h
Q 005002 711 P 711 (720)
Q Consensus 711 ~ 711 (720)
-
T Consensus 267 ~ 267 (314)
T PRK08269 267 E 267 (314)
T ss_pred H
Confidence 3
No 414
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=34.30 E-value=3e+02 Score=23.57 Aligned_cols=77 Identities=9% Similarity=0.170 Sum_probs=50.9
Q ss_pred eeeeeecCc-----eEEEeccCCCCHHHHHHHHHhhcCC---CCceeEE-eeCCCCCeeeecCchHHHHHHHhhcCC-Cc
Q 005002 262 TVKLVFGDD-----IRWAQLPVNCSIRLVRDIVRDRFPS---LKGVLVK-YKDQEGDLVTITTTDELRFVEMLFNSQ-SF 331 (720)
Q Consensus 262 ~~K~~~g~D-----iR~~~~~~~~s~~~L~~~v~~kF~~---~~~~~ik-YkDedGDlVtitsd~dl~~A~~~~~~~-~~ 331 (720)
.|||..++- .+.+.++.+.|-.+++..+.++|.. ...|.|- +.-..|---.+..++-.......-... ..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~ 83 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQN 83 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTT
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCc
Confidence 466666654 6778899999999999999999964 2447775 555555555555555554444433332 36
Q ss_pred eEEEEEe
Q 005002 332 LRLYIAE 338 (720)
Q Consensus 332 ~rL~v~e 338 (720)
.+|++.+
T Consensus 84 ~~f~lr~ 90 (93)
T PF00788_consen 84 SRFVLRR 90 (93)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 7777765
No 415
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=34.19 E-value=1e+02 Score=27.34 Aligned_cols=50 Identities=12% Similarity=-0.037 Sum_probs=33.2
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCC-ceeEEeeCCCCCee
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLK-GVLVKYKDQEGDLV 311 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~-~~~ikYkDedGDlV 311 (720)
++++||.=-+-.++.-|-. -|+.+|+.++.++|+-.. +++ =|-++||--|
T Consensus 2 ~kp~kV~~~~rs~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~-l~L~eDGTeV 52 (77)
T cd06535 2 PKCVKIRSLNSAQKYGVAA-KNLKELLRKGCRLLQLPCAGSR-LCLYEDGTEV 52 (77)
T ss_pred CCceEEecCCCCeeEeEEc-CCHHHHHHHHHHHhCCCCCCcE-EEEecCCcEe
Confidence 4566765544433333322 279999999999996433 444 3569999998
No 416
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=34.10 E-value=1.5e+02 Score=29.12 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=27.5
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Q 005002 39 EDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI 83 (720)
Q Consensus 39 ~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~ 83 (720)
++...+-+..+.|++---.++.+-+.+.|-..|.+.+.+.|++-+
T Consensus 67 k~ktk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLp 111 (139)
T PF12583_consen 67 KDKTKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLP 111 (139)
T ss_dssp -----HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-TH
T ss_pred cccccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHH
Confidence 344444466667777767777777888888888888888888763
No 417
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.55 E-value=1.5e+02 Score=31.67 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 005002 57 KLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 57 ~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~ 121 (720)
.+.+.+...+|+..-..-++-.|.+.. +...+=..|+-+ |+|.+|+..|+.+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~----~RhflfqLlcva--Gdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAG----GRHFLFQLLCVA--GDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCcccc----chhHHHHHHhhc--chHHHHHHHHHHHhhcCccc
Confidence 344555555555555555555555552 222222223333 55555555555555555554
No 418
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=33.50 E-value=54 Score=32.68 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=28.6
Q ss_pred cceeeeeecCc----eEEEeccCCCCHHHHHHHHHhhcC
Q 005002 260 TKTVKLVFGDD----IRWAQLPVNCSIRLVRDIVRDRFP 294 (720)
Q Consensus 260 ~~~~K~~~g~D----iR~~~~~~~~s~~~L~~~v~~kF~ 294 (720)
..+|||.+-+. -|++.||.++||.+|-.+|+..|.
T Consensus 4 ~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afg 42 (179)
T PF07929_consen 4 VYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFG 42 (179)
T ss_dssp EEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT
T ss_pred EEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 45678887553 799999999999999999999995
No 419
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=33.09 E-value=1e+02 Score=35.77 Aligned_cols=120 Identities=17% Similarity=0.240 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH----------------HHHHHcCCCC---HHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMA----------------GCYMQMGLGE---FPRAINE 110 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrA----------------a~y~kL~~gd---yeeAI~d 110 (720)
.....|...+..+++.+++.++..||+..-..-.+.+.++.+.. .+|..+ -|. ....+.-
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~-fg~~le~a~Cl~r 111 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAI-FGHLLERAACLRR 111 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHH-HHHHHHHHHHHHH
Confidence 55678999999999999999999998653211111111222211 111111 011 1222233
Q ss_pred HHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 111 CNLALEVSSKY----------SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 111 ~~kALeLdP~~----------~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|...+--.|.. ...|-.+=.||...|++..|++.-...|-.+|++..+..++..-+..++
T Consensus 112 Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~ 181 (471)
T KOG4459|consen 112 CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLG 181 (471)
T ss_pred HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccC
Confidence 33333223322 2567788999999999999999999999999999999999998876664
No 420
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=32.41 E-value=1.4e+02 Score=31.79 Aligned_cols=50 Identities=28% Similarity=0.352 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
+.|...|+.|+.+ .|..+|.+--+..|.+..|+.+ .++.++|+..+..|+
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI-~~~~~~A~~lAk~af 198 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEI-LNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4666777777654 2222323334455556665555 466666666555553
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.34 E-value=1.1e+02 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSALEV 161 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~~~ 161 (720)
+++.|...|++++...|.+...+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 3444555555555555544444433
No 422
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.87 E-value=1.6e+02 Score=30.96 Aligned_cols=51 Identities=31% Similarity=0.405 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
+.|...|++|+.+ .|..++.+-.+..|.+..|+.. .++..+|+..+..|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei-~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEI-LNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 5666677776643 2223333445556666666554 4777777777766643
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.73 E-value=6.2e+02 Score=28.77 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--------------
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-------------- 118 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-------------- 118 (720)
+.-....+.++..+-|..-..||+++|.... +|.-+|.--. ....+|...+.+||+.-
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~----AyvLLAEEEa----~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECAT----AYVLLAEEEA----TTIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhh----HHHhhhhhhh----hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 4556778888899999999999999998873 5555543211 12333444444443221
Q ss_pred ---------CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 119 ---------SKYSKALL--KRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 119 ---------P~~~KAy~--rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
-.++..|. |+|.|-..+|+..+|++.++...+-.|-
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 11333343 5799999999999999999988877663
No 424
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.97 E-value=2.1e+02 Score=31.69 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEF 104 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdy 104 (720)
.+.+|.+.+..++++|+..|.+.+.. +.....+.-....+++..|..+ |+|
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~--g~~ 61 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSK--GDY 61 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhc--CCc
Confidence 46788999999999999999998865 2222222234556677777765 544
No 425
>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S. cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex
Probab=30.94 E-value=75 Score=28.78 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHhhccccc--cccccccccHHHHHHHHHHHHhhhhhc
Q 005002 638 CLEVAVEKFELAGASPTDIAVMIKNHCSNE--TALEGFGFKIDEIVQAWNEMYDAKRWQ 694 (720)
Q Consensus 638 ~l~~avekf~~ag~~~~di~~~~knh~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (720)
.|=.||.+||=+|..+-=--.+|.+|-.+. ...-+-.|.+++|.+-++.|||-+..-
T Consensus 5 ~Lf~a~~~~KPvGi~KHF~M~~I~~~l~~~~~~~~~~~~~t~~~IW~kL~~~YdL~~ld 63 (91)
T PF07904_consen 5 RLFRAMCRYKPVGIHKHFHMICIVERLNNPGFDPKLNKHFTIDDIWKKLRTLYDLEALD 63 (91)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHhccccCCccCCcCCHHHHHHHHHHhcCHHHhc
Confidence 355789999999998865555555555544 111245899999999999999977543
No 426
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.24 E-value=1.2e+02 Score=20.30 Aligned_cols=24 Identities=33% Similarity=0.199 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 104 FPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 104 yeeAI~d~~kALeLdP~~~KAy~r 127 (720)
++.|...|++++...|.++..+..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444455555444444444433
No 427
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.20 E-value=2.7e+02 Score=35.75 Aligned_cols=106 Identities=15% Similarity=0.237 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS---------- 119 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP---------- 119 (720)
.+...|+.+|..+.|+.|--.|... .-|..+|..+..+ |+|..|...+++|-....
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v------------SN~a~La~TLV~L--geyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV------------SNFAKLASTLVYL--GEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh------------hhHHHHHHHHHHH--HHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 4567899999999999999999752 3567888888888 999999999888743311
Q ss_pred -C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 120 -K--------------YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 120 -~--------------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
. ++.-+--+-.-|...|-|++-+..++.+|-++-.+-..-..|+.++.+-
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 0 1122333445566778888888888888877777766667777766644
No 428
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=70 Score=38.50 Aligned_cols=59 Identities=12% Similarity=-0.024 Sum_probs=51.7
Q ss_pred eeeeecCceEEEeccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCCCeeeecCchHHHH
Q 005002 263 VKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEGDLVTITTTDELRF 321 (720)
Q Consensus 263 ~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedGDlVtitsd~dl~~ 321 (720)
.+.++|+|+.-+.++..-+.++|.+.|..-|-. .+.|+|-|.+++-+.-+..+++.++-
T Consensus 150 ~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~ 209 (823)
T COG5560 150 SLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRR 209 (823)
T ss_pred hhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhh
Confidence 466788899999999999999999999999942 55899999999999999999988754
No 429
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=29.07 E-value=1.5e+02 Score=25.04 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=23.3
Q ss_pred cCceEEEeccCCCCHHHHHHHHHhhcCC
Q 005002 268 GDDIRWAQLPVNCSIRLVRDIVRDRFPS 295 (720)
Q Consensus 268 g~DiR~~~~~~~~s~~~L~~~v~~kF~~ 295 (720)
|.+...+.+|.++|..+|++.+...||.
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~ 41 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPG 41 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCch
Confidence 4555667788899999999999999985
No 430
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.05 E-value=1.1e+02 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
.+.|-.+.+.|-.+=..|+.+.|+.+|++++...
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 3556666666666666677777777777776544
No 431
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.81 E-value=1.7e+02 Score=25.55 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 141 AFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 141 Al~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
|+..|..++...|+...-.....++..
T Consensus 32 aie~l~~~lk~e~d~~~k~~~r~ki~e 58 (77)
T cd02683 32 GIDLLMQVLKGTKDEAKKKNLRQKISE 58 (77)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 333445555566655443333333333
No 432
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.60 E-value=1.4e+02 Score=35.22 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=67.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005002 57 KLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN 136 (720)
Q Consensus 57 ~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG 136 (720)
..-..|+|+.|+.....+-....... ...--+-....++ ++++.|...+...|.-.-..+..+--.|..-..+|
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~~~~~r~~~~l--~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTD----STLRCRLRSLHGL--ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQ 405 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCc----hHHHHHHHhhhch--hhHHHHHHHHHHHhccccCChhheeeecccHHHHh
Confidence 33445667766666655544443322 1222233344555 89999999999888877777777777777788899
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHH
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSAL 159 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~ 159 (720)
-+++|+.++++++.++|.....+
T Consensus 406 ~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 406 LFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHHHHhccCChhcccc
Confidence 99999999999999998754433
No 433
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.36 E-value=90 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 90 SNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 90 ~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
+++|.+|+.+ |+++.|....+.++.-
T Consensus 3 LdLA~ayie~--Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEM--GDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHc--CChHHHHHHHHHHHHc
Confidence 6789999999 9999999999999953
No 434
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=28.28 E-value=1.5e+02 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=31.4
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005002 37 FDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKAL 75 (720)
Q Consensus 37 ~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL 75 (720)
+......++++|..+.+-|.-++.+||+..|+..+.-|.
T Consensus 24 ~~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~ 62 (75)
T PF04010_consen 24 LYDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAH 62 (75)
T ss_dssp --HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556678999999999999999999999999987654
No 435
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=27.38 E-value=1.7e+02 Score=24.24 Aligned_cols=43 Identities=5% Similarity=0.026 Sum_probs=31.0
Q ss_pred eeeeecC-ceEEEeccCCCCHHHHHHHHHhhcC-CC-CceeEEeeC
Q 005002 263 VKLVFGD-DIRWAQLPVNCSIRLVRDIVRDRFP-SL-KGVLVKYKD 305 (720)
Q Consensus 263 ~K~~~g~-DiR~~~~~~~~s~~~L~~~v~~kF~-~~-~~~~ikYkD 305 (720)
|+++.-+ ..-.+.+..+.++..|++...++.. +. ..+.+.|..
T Consensus 3 i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG 48 (72)
T PF11976_consen 3 IKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDG 48 (72)
T ss_dssp EEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECC
Confidence 4455432 2445567889999999999999884 23 679999964
No 436
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=2.2e+02 Score=33.85 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
.-++..+...|+-+.|+..++.++. +.-..-...++.-+|.+++-+ .+|.+|-.++......+ ++.+|+|.
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~--~~~~~aad~~~~L~des-dWS~a~Y~ 341 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQ--HQYSRAADSFDLLRDES-DWSHAFYT 341 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhhh-hhhHHHHH
Confidence 3455555556666666666666665 221111245666666666665 66666666666655543 55555554
No 437
>PF02335 Cytochrom_C552: Cytochrome c552; InterPro: IPR003321 The enzyme cytochrome c nitrite reductase (c552) catalyses the six-electron reduction of nitrite to ammonia as one of the key steps in the biological nitrogen cycle, where it participates in the anaerobic energy metabolism of dissimilatory nitrate ammonification. Cytochrome c nitrite reductase from Sulfurospirillum deleyianum is a functional dimer, with 10 close-packed haem groups of type c and an unusual lysine-coordinated high-spin haem at the active site [].; GO: 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1QDB_B 3TTB_B 3BNJ_A 3BNG_A 1FS8_A 2E80_A 3BNH_A 1FS7_A 2E81_A 3BNF_A ....
Probab=26.95 E-value=6.2e+02 Score=29.40 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHccCchhhHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHhH
Q 005002 484 HEWAKKEYAMAGMRYQEALKIKQDFYEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQMW 563 (720)
Q Consensus 484 ~~~~~~~y~~a~~kye~a~~ikpdf~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~w 563 (720)
...+...-..|..-++.|... .=-+.-|.-.+.....|...|.|+.+.+-.+ .=.++|++.+...|.+.-.+|....
T Consensus 301 ~~~~~~~l~~a~~~~~~A~~~--ga~~~~l~~a~~~~r~Aq~~wd~v~Aens~g-fHnP~ea~r~L~~s~~~a~~a~~~l 377 (434)
T PF02335_consen 301 LRRAEDALVKAHFEAKAAWDA--GATEEELKEARELIRKAQWRWDFVAAENSMG-FHNPQEALRILGKSIDYARQARAKL 377 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-HHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhhhheeEEEEEeecCccc-ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555533 3357778888888999999999999986533 3357799999999999888887643
Q ss_pred H
Q 005002 564 E 564 (720)
Q Consensus 564 ~ 564 (720)
.
T Consensus 378 ~ 378 (434)
T PF02335_consen 378 R 378 (434)
T ss_dssp H
T ss_pred H
Confidence 3
No 438
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.83 E-value=90 Score=34.82 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=49.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 56 NKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAG-CYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 56 n~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa-~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+-..+.+-|.+--..|.+++...|.+.+ +|...|. -|.- .++++.+...+.++|+++|++|+.++.
T Consensus 115 ~Y~~k~k~y~~~~nI~~~~l~khP~nvd----lWI~~c~~e~~~--~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 115 AYVIKKKMYGEMKNIFAECLTKHPLNVD----LWIYCCAFELFE--IANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCce----eeeeeccchhhh--hccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3334455677778889999999999995 5554232 2333 389999999999999999999986543
No 439
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.45 E-value=3.7e+02 Score=25.54 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHH
Q 005002 92 MAGCYMQMGLGEFPRAINECNLALEVSSKYS---KALLKRAQCYKALNR-----------LDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 92 rAa~y~kL~~gdyeeAI~d~~kALeLdP~~~---KAy~rrA~Ay~~LGr-----------yeeAl~d~ekAL~LdP~n~~ 157 (720)
+|.-++.- ||+-+|++..+..+..+++.. -.+..-|.+++.+.. +-.|+..|.++..+.|..+.
T Consensus 2 ~A~~~~~r--GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFAR--GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHc--cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 34556664 999999999999999988765 445556777765542 33477888888888888755
Q ss_pred HHHHHHHH
Q 005002 158 ALEVLESV 165 (720)
Q Consensus 158 A~~~L~~l 165 (720)
.+-.|+.-
T Consensus 80 ~L~~la~~ 87 (111)
T PF04781_consen 80 SLFELASQ 87 (111)
T ss_pred HHHHHHHH
Confidence 55444443
No 440
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.88 E-value=6.9e+02 Score=26.19 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHHhhhhcCCCccccchHHHHHHHHHHHHhhhcChHHHHHHHHH-----HHHHHHHHHHHHHhhhhhHHH
Q 005002 384 CIEDWIIEFAQLFKNHVGFDSDSFLNLHELGMKLYSEAMEDTVTSEEAQELFEM-----AADNFQEMAALAVFNWGNIHL 458 (720)
Q Consensus 384 ~id~w~~~fa~lf~~~~g~~~d~~l~l~~~g~~~~~eale~~v~~~~a~~lf~~-----a~~kfqe~aa~a~fnwgnvhm 458 (720)
.|++||-.+++.+++.+- ..-+|..+---+.+-.+-..+ -.-.++|. |..+|.+..--= | +..+
T Consensus 12 ~iE~Wl~~~~~~~~k~~~----~~~~~e~~~nsfl~~~~p~~~---~s~~vidqdYT~~al~~f~~~l~e~---~-~~ll 80 (214)
T cd07609 12 AIEKWLDGYVSSTKKLYS----SLDELERVINSFLSHLLPPLL---VSGGVIDQDYTPLALKRFGDGLKDF---W-GGVL 80 (214)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCccc---cccchhCchhHHHHHHHHHHHHHHH---H-HHHH
Confidence 489999999999998763 222333332222222222111 12334444 555555432211 1 6777
Q ss_pred HhhhhccCCCCCcchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Q 005002 459 SRARKRIFFPEDGLRESILAQVT---VAHEWAKKEYAMAGMRYQEALK 503 (720)
Q Consensus 459 ~~ark~~~~~~~~~~e~~~~~~~---~~~~~~~~~y~~a~~kye~a~~ 503 (720)
..+++-- ..-.+++..-++ ..|...++.|++..++|..+|.
T Consensus 81 ~~~~~~~----~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~ 124 (214)
T cd07609 81 SALKGND----SLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLA 124 (214)
T ss_pred HHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776433 111233332222 2466677777777777766653
No 441
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=25.76 E-value=1.6e+02 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.8
Q ss_pred cceeeeeecCc----eEEEeccCCCCHHHHHHHHHhhcC
Q 005002 260 TKTVKLVFGDD----IRWAQLPVNCSIRLVRDIVRDRFP 294 (720)
Q Consensus 260 ~~~~K~~~g~D----iR~~~~~~~~s~~~L~~~v~~kF~ 294 (720)
+.++|++.+-| .|++.||++..|.-++.-..+-|.
T Consensus 2 kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~ 40 (76)
T PF03671_consen 2 KVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFK 40 (76)
T ss_dssp EEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTT
T ss_pred cEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcC
Confidence 46789999998 899999999999999999999993
No 442
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=25.20 E-value=1.9e+02 Score=25.55 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHH
Q 005002 281 SIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDEL 319 (720)
Q Consensus 281 s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl 319 (720)
|+.+|+.++..+|.-.....-=|-++||-.| +|+|.
T Consensus 20 sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~V---ddEey 55 (74)
T smart00266 20 SLEELLSKVCDKLALPDSPVTLVLEEDGTIV---DDEEY 55 (74)
T ss_pred CHHHHHHHHHHHhCCCCCCcEEEEecCCcEE---ccHHH
Confidence 7999999999999744333444778999665 56665
No 443
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=25.07 E-value=1.5e+02 Score=27.42 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=33.5
Q ss_pred hHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005002 40 DTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL 78 (720)
Q Consensus 40 d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~ 78 (720)
....+++.|..+..+|..++..||.+.|-..|.+.+.+.
T Consensus 30 ~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 30 PLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345578999999999999999999999999999988776
No 444
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=25.03 E-value=2.8e+02 Score=23.33 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=41.1
Q ss_pred ecCc-eEEEeccCCCCHHHHHHHHHhhcC--CCCceeEEe-eCCCCCeeeecCchHH
Q 005002 267 FGDD-IRWAQLPVNCSIRLVRDIVRDRFP--SLKGVLVKY-KDQEGDLVTITTTDEL 319 (720)
Q Consensus 267 ~g~D-iR~~~~~~~~s~~~L~~~v~~kF~--~~~~~~ikY-kDedGDlVtitsd~dl 319 (720)
+-|+ ++.+.++.+++-.+|++.|.++.. ....|-|.| .|.+|..+=+..+.-|
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l 59 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKL 59 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBG
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccH
Confidence 3344 577789999999999999999994 223399999 8999988777776555
No 445
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=25.02 E-value=4.3e+02 Score=26.33 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=26.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 117 VSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 117 LdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
-+..++.-++.+|.||..+|+..+|-..+.+|.+-
T Consensus 115 n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 115 NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ---S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34567889999999999999999999999888753
No 446
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=24.67 E-value=29 Score=26.20 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhcCCCcccc
Q 005002 390 IEFAQLFKNHVGFDSDSFL 408 (720)
Q Consensus 390 ~~fa~lf~~~~g~~~d~~l 408 (720)
-.|.++||+++|+.|-.|+
T Consensus 23 ~~f~r~Fk~~~g~tp~~y~ 41 (42)
T PF00165_consen 23 SYFSRLFKKETGMTPKQYR 41 (42)
T ss_dssp HHHHHHHHHHTSS-HHHHH
T ss_pred HHHHHHHHHHHCcCHHHHh
Confidence 3699999999999876554
No 447
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.66 E-value=1.4e+02 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
...|.-+-..|+|++|+..|..++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444556666666666666554
No 448
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.39 E-value=1.8e+02 Score=33.00 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK 80 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~ 80 (720)
+.+..+...|+.++..++|+.|...|..|..+...
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999987543
No 449
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=23.99 E-value=1.6e+02 Score=24.96 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=5.1
Q ss_pred HHHHHHHcCCC
Q 005002 144 DVNNVLSMEPN 154 (720)
Q Consensus 144 d~ekAL~LdP~ 154 (720)
.|..++..+|+
T Consensus 37 ~l~~~~~~~~~ 47 (77)
T smart00745 37 YLLEGIKVESD 47 (77)
T ss_pred HHHHHhccCCC
Confidence 34444445554
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.40 E-value=2.2e+02 Score=27.29 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH 82 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~ 82 (720)
..-..-...|..+...|++.+|+.+|-+||...|.-.
T Consensus 61 ~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 61 RFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 4445556789999999999999999999999999855
No 451
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=22.86 E-value=3e+02 Score=21.68 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=41.5
Q ss_pred EEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCC-----eeeecCchHHHHHHHhh
Q 005002 272 RWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGD-----LVTITTTDELRFVEMLF 326 (720)
Q Consensus 272 R~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGD-----lVtitsd~dl~~A~~~~ 326 (720)
++--||.++|-.+|++.... |.....+.|... ..|- +|++.+.++...|+...
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp EEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEcCCCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHc
Confidence 34458999999999999888 776777777765 3332 79999999999998854
No 452
>PRK11125 nrfA cytochrome c nitrite reductase subunit c552; Provisional
Probab=22.51 E-value=8.8e+02 Score=28.61 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=42.8
Q ss_pred hHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 005002 509 YEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQM 562 (720)
Q Consensus 509 ~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~ 562 (720)
=+..++=.++....|..-|.|+.|++-. +.=.++|++.+...|.+.-.+|...
T Consensus 364 ~~~~m~~a~~~~R~AqwrwDf~~Aens~-gfHnP~ea~r~L~~s~~~a~~A~~~ 416 (480)
T PRK11125 364 TEAEMKPILTDIRHAQWRWDYAIASHGI-HMHAPEEALRILGTALDKAADARTK 416 (480)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccc-ccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888889999999999999763 3446789999999999988888654
No 453
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.43 E-value=1.4e+02 Score=27.09 Aligned_cols=37 Identities=38% Similarity=0.553 Sum_probs=29.4
Q ss_pred ccccchHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q 005002 405 DSFLNLHELGMKLYSEAMEDTVTSEEAQELFEMAADNFQEM 445 (720)
Q Consensus 405 d~~l~l~~~g~~~~~eale~~v~~~~a~~lf~~a~~kfqe~ 445 (720)
|--+.|++ ||+||-+||.. ..+||.+++.|.-.|+++
T Consensus 43 dpeisL~e-SvkLYkeG~~l---L~eAqk~LE~AkLe~~eI 79 (86)
T PRK14065 43 DPNLSLKD-GMDLYKTAMQE---LFLAQKLLENAYLEYEKL 79 (86)
T ss_pred CCCCCHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 45566654 78888888875 469999999999999875
No 454
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=22.28 E-value=2.5e+02 Score=25.10 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=36.7
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHH
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDEL 319 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl 319 (720)
++++||.=.+-.++.-|-. .|+.+|+.++.++|.-... .-=|-++||-.| +|+|.
T Consensus 2 ~kp~kV~~~~rs~k~GV~A-~sL~eL~~K~~~~l~l~~~-~~lvL~eDGT~V---d~Eey 56 (79)
T cd06538 2 PRPFRVSNADRSLRKGIMA-DSLEDLLNKVLDALLLDCI-SSLVLDEDGTGV---DTEEF 56 (79)
T ss_pred CCcEEEecCCCceeEeEEc-CCHHHHHHHHHHHcCCCCc-cEEEEecCCcEE---ccHHH
Confidence 4667776555443433322 2799999999999975333 445789999655 56666
No 455
>COG4499 Predicted membrane protein [Function unknown]
Probab=22.26 E-value=1.2e+03 Score=26.80 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAIN-ECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~-d~~kALeLdP~~~KAy~rrA~A 131 (720)
..|+..|-..+|.+-+.-|+. ++|..-+ -.+.+-+|..|..+ .+...... ...-.|.+..+.. +.+--+
T Consensus 253 ~~a~~aFL~~nY~qVittLe~---ydp~klP--ksv~Y~LA~SYV~~--e~L~~~kkeNi~NnislkSd~~---~llYWi 322 (434)
T COG4499 253 ITANTAFLKNNYDQVITTLEN---YDPEKLP--KSVQYILAVSYVNL--EDLTTTKKENILNNISLKSDDN---YLLYWI 322 (434)
T ss_pred HHHHHHHHhccHHHHhhhccc---CChhhCc--HHHHHHHHHHHhhc--cccchHHHHHHhhccccccchh---HHHHHH
Confidence 456666666666665555443 3444332 25677788888886 33333322 2233333333222 223356
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
+...|.+++|+.. |-.|+-++-.
T Consensus 323 ~~GRGe~~eAinI---Ar~L~D~d~~ 345 (434)
T COG4499 323 YSGRGEFKEAINI---ARNLDDNDLT 345 (434)
T ss_pred HhcCccHHHHhhH---HHhCCcchhH
Confidence 7788999999755 4455544433
No 456
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.18 E-value=9.4e+02 Score=28.06 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEV----SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
+++.+-+=.+|+.- +.|+.|-....++.-- +..+...+|.+|++..-.++|..|.+++-.|+...|.+
T Consensus 209 avLiN~LLr~yL~n--~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHN--KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhh--HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 45555555566553 7788877766666411 12467789999999999999999999999999999984
No 457
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=22.16 E-value=1e+03 Score=25.69 Aligned_cols=70 Identities=7% Similarity=0.065 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhhcCCCccccchHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhhcc
Q 005002 387 DWIIEFAQLFKNHVGFDSDSFLNLHELGMKLYSEAMEDTVTSEEAQELFEMAADNFQEMAALAVFNWGNIHLSRARKRI 465 (720)
Q Consensus 387 ~w~~~fa~lf~~~~g~~~d~~l~l~~~g~~~~~eale~~v~~~~a~~lf~~a~~kfqe~aa~a~fnwgnvhm~~ark~~ 465 (720)
.|+-+++.+|+...-|...---.|..|.-+.. ..+++ .-...-|..| |+.+- ..+-+-|+.|...+...+
T Consensus 19 ~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~-~~~~~----~~~~Gtl~~a---w~~i~-~etE~ia~~H~~la~~L~ 88 (258)
T cd07680 19 RLCNDLMNCVQERAKIEKAYGQQLTDWAKRWR-QLIEK----GPQYGSLERA---WGAIM-TEADKVSELHQEVKNNLL 88 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccc----CCCcchHHHH---HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46777888888888887666677887774332 22111 1112334444 44433 255677889998888776
No 458
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.95 E-value=3.4e+02 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.154 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
+++.....+|-..+-.|||..|.....++-+.
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56666777777777777777777777777554
No 459
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=21.93 E-value=3.9e+02 Score=29.83 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=40.6
Q ss_pred eEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCC-----eeeecCchHHHHHHHhh
Q 005002 271 IRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGD-----LVTITTTDELRFVEMLF 326 (720)
Q Consensus 271 iR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGD-----lVtitsd~dl~~A~~~~ 326 (720)
|++--||.++|-++|.+.. .+|.....+.|......|- +|++.+.++...|+...
T Consensus 196 lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 196 LYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3444489999999998876 5665566666664444554 89999999999998854
No 460
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=21.81 E-value=4.8e+02 Score=28.07 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
+...+||.....-++-+|.+.-....+-..|.-.|+|+.|+.-++-+-.++|++..-
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 789999999999999999999888888899999999999999999999999997543
No 461
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=21.79 E-value=2.3e+02 Score=19.89 Aligned_cols=25 Identities=24% Similarity=0.052 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 108 INECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 108 I~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
+..+..+|..+|.+..++..|-.++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3444455555555555544443333
No 462
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.68 E-value=51 Score=25.98 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=21.3
Q ss_pred ccccccccHHHHHHHHHHHHhhhhhccCCCccccchhhhc
Q 005002 669 ALEGFGFKIDEIVQAWNEMYDAKRWQIGVPSFRLEPLFRR 708 (720)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (720)
|+.+|||+-.||.+|...... .|...+|-+.|.
T Consensus 9 AL~~LGy~~~e~~~av~~~~~-------~~~~~~e~~ik~ 41 (47)
T PF07499_consen 9 ALISLGYSKAEAQKAVSKLLE-------KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHTTS-HHHHHHHHHHHHH-------STTS-HHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHhhc-------CCCCCHHHHHHH
Confidence 346789999999999888875 233335555553
No 463
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.62 E-value=5.3e+02 Score=30.79 Aligned_cols=83 Identities=12% Similarity=-0.017 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS------S-KYSKALLKRAQCYKALNR-LDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd------P-~~~KAy~rrA~Ay~~LGr-yeeAl~d~ekAL~LdP~n~ 156 (720)
...-+.-+|.|+..+ |+-..|-.++..+++-. | -.|-|+|-+|..|..++. +.+|...+.+|-....++.
T Consensus 448 ~~lk~lL~g~~lR~L--g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 448 EGLKYLLKGVILRNL--GDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 345667789999998 89999999999888432 1 257899999999999999 9999999999988765544
Q ss_pred HHHHHHHHHHHHh
Q 005002 157 SALEVLESVKQSM 169 (720)
Q Consensus 157 ~A~~~L~~lk~~l 169 (720)
--.+..-+++.++
T Consensus 526 lenRLh~rIqAAl 538 (546)
T KOG3783|consen 526 LENRLHMRIQAAL 538 (546)
T ss_pred hhhHHHHHHHHHH
Confidence 3333333333333
No 464
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.07 E-value=4.7e+02 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
...-+|+...+.++..+|.|....+.+-+.|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4566788888999999999999999999999999999999988854
No 465
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.83 E-value=7.9e+02 Score=25.77 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHccCchhhH-HHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHH--
Q 005002 472 LRESILAQVTVAHEWAKKEYAMAGMR---YQEALKIKQDFYE-GLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEV-- 545 (720)
Q Consensus 472 ~~e~~~~~~~~~~~~~~~~y~~a~~k---ye~a~~ikpdf~e-~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~-- 545 (720)
|++.+..--+.-++.|+..+.+|.+. ....|.==||||- |++.=|+|.|=-|-+-.++--.. ..+++.|.
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~----~~ps~~EL~V 108 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG----RLPSPEELGV 108 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC----CCCCHHHcCC
Confidence 33444444455567777666666554 4446677799998 99999999999998855543222 23333322
Q ss_pred -HH-----------------HHHHHHHHHHHHHHhHHHHHHHH
Q 005002 546 -LE-----------------LYNKAEDSMEKGVQMWEEMEEQR 570 (720)
Q Consensus 546 -~~-----------------~~~~ae~~~~~~~~~w~~~e~~~ 570 (720)
.. |=+.-+.+++.|.++...||.--
T Consensus 109 ~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY 151 (204)
T COG2178 109 PPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLY 151 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 22666788888888888888643
No 466
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=20.62 E-value=32 Score=32.07 Aligned_cols=47 Identities=28% Similarity=0.414 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhcCCCccccchHHHHHHHHHHHHhhhcChHHHHHHHHHHH
Q 005002 390 IEFAQLFKNHVGFDSDSFLNLHELGMKLYSEAMEDTVTSEEAQELFEMAA 439 (720)
Q Consensus 390 ~~fa~lf~~~~g~~~d~~l~l~~~g~~~~~eale~~v~~~~a~~lf~~a~ 439 (720)
+.=|+=-=++.|+.+|.|+.+.++|+++-.. +.++.++.+++++...
T Consensus 62 ~~Ca~k~le~~g~~~~~~i~~tdlgi~k~~~---~~~~~~~i~~~~~~v~ 108 (110)
T PF08859_consen 62 LCCAKKILEEAGVKPDEHIVLTDLGIKKRKG---DDVSEEEIEEVVEAVK 108 (110)
T ss_pred HHHHHHHHHHcCCCCceEEEEeecccccCCC---CCCCHHHHHHHHHHHH
Confidence 4455555678999999999999999987433 7788888888876543
No 467
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=20.61 E-value=2.1e+02 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 005002 136 NRLDFAFRDVNNVL 149 (720)
Q Consensus 136 GryeeAl~d~ekAL 149 (720)
|+|++|+..|..++
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 468
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=20.56 E-value=1.8e+02 Score=25.92 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHhhccccchHHHHHHHHHHHHhcCCChhHHHHHHhhccccc--ccc---------ccccccHHHHHHHHHHH
Q 005002 626 VEYKLELPTWEECLEVAVEKFELAGASPTDIAVMIKNHCSNE--TAL---------EGFGFKIDEIVQAWNEM 687 (720)
Q Consensus 626 ~~~~~g~~~w~~~l~~avekf~~ag~~~~di~~~~knh~~~~--~~~---------~~~~~~~~~~~~~~~~~ 687 (720)
|--.+| ++|+... +.-|-|++||..+-.+|+-+- -.. +|-+..++.+++|.+.|
T Consensus 8 i~~~lG-~~Wk~la-------R~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~ 72 (86)
T cd08306 8 ICENVG-RDWRKLA-------RKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRDC 72 (86)
T ss_pred HHHHHh-hhHHHHH-------HHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHc
Confidence 445677 7998853 456999999999999998652 111 23455566666665543
No 469
>PF13041 PPR_2: PPR repeat family
Probab=20.45 E-value=3.9e+02 Score=20.38 Aligned_cols=27 Identities=7% Similarity=0.060 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
.|..+=.+|...|++++|++.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444555556666666666655554
No 470
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.24 E-value=1.5e+02 Score=31.71 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhcccccccccc-------ccccHHHHHHHHHHHHh
Q 005002 639 LEVAVEKFELAGASPTDIAVMIKNHCSNETALEG-------FGFKIDEIVQAWNEMYD 689 (720)
Q Consensus 639 l~~avekf~~ag~~~~di~~~~knh~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 689 (720)
+.+|+.-.+.+|+++.||..+++.-+---.+.-| +| +|-+...++.||.
T Consensus 195 ~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G--l~~~~~~~~~l~~ 250 (311)
T PRK06130 195 AREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG--LDVHLAVASYLYQ 250 (311)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc--cchHHHHHHHHHH
Confidence 7789999999999999999999632111111112 23 6667788888875
No 471
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.23 E-value=2.5e+02 Score=29.68 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHhhcc---ccccc-cccccccHHHHHHHHHHHHhhhhhccCCCccccchhhhccc
Q 005002 638 CLEVAVEKFELAGASPTDIAVMIKNHC---SNETA-LEGFGFKIDEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRV 710 (720)
Q Consensus 638 ~l~~avekf~~ag~~~~di~~~~knh~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (720)
.+.+|+.-..+.-+++.||..+++..+ ..--. .+.+| +|.++..-+.+|+. .|.|.|+--|++++++
T Consensus 196 ~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~G--l~~~~~~~~~l~~~----~~~~~~~~~~~l~~~~ 266 (282)
T PRK05808 196 MINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIG--LDTCLAIMEVLYEG----FGDSKYRPCPLLRKMV 266 (282)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh--hHHHHHHHHHHHHH----cCCCcCCCCHHHHHHH
Confidence 355677777776699999999997432 10000 01134 78888999999985 3555666667777654
No 472
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=20.17 E-value=1e+03 Score=28.68 Aligned_cols=102 Identities=15% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV-SSKYSKALLKRA 129 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL-dP~~~KAy~rrA 129 (720)
+..--..-...|++......|++++.-+.... -+|.+.+.-.... |+..-|-....++.++ .|+-+..++.-+
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~----efWiky~~~m~~~--~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYD----EFWIKYARWMESS--GDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH----HHHHHHHHHHHHc--CchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 33333344466777777777777776555555 3666666666554 6666666655555554 355666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
..-...|+++.|...|++..+--|+...+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 66677777777777777777655665444
No 473
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.07 E-value=1.5e+02 Score=26.04 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHh
Q 005002 102 GEFPRAINECNLALEV 117 (720)
Q Consensus 102 gdyeeAI~d~~kALeL 117 (720)
|+|++|+..|..||+.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 6777777777777664
No 474
>PRK11619 lytic murein transglycosylase; Provisional
Probab=20.07 E-value=7.1e+02 Score=30.28 Aligned_cols=49 Identities=8% Similarity=-0.141 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
++++.+...+...-.-........|-+|+++..+|+.++|...|+++..
T Consensus 326 ~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6777766666554332335678999999999999999999999999754
No 475
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=20.02 E-value=9.6e+02 Score=26.20 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=72.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHhCCCCHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFP----RAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdye----eAI~d~~kALeLdP~~~KAy~rr 128 (720)
.-..+++.++|++=-..|.+...-..+..+ +.-+++...+.+...+ .... .-....+.=++..|++..+++.+
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~--~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~ 83 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDM--DSVVDAWQARLAVLKAWVAACPKSYHAHLAM 83 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCc--chhhhHHHhHHHHHHHHHHHCCCChHHHHHH
Confidence 345678889999888888887644433111 1112222222222222 1111 23333444477899999999988
Q ss_pred HHHHHHcC----------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 129 AQCYKALN----------------------RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 129 A~Ay~~LG----------------------ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|..+.... -.+.|..++.+|+.++|....+...+-.+-..++
T Consensus 84 g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 84 GMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 88875532 4567889999999999999988888877766654
Done!