Query 005002
Match_columns 720
No_of_seqs 343 out of 1747
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 3.2E-19 1.1E-23 162.6 16.5 115 46-166 11-125 (126)
2 2kkc_A Sequestosome-1; P62, PB 99.8 7.8E-19 2.7E-23 158.1 9.9 78 260-338 5-101 (102)
3 3rkv_A Putative peptidylprolyl 99.8 5E-18 1.7E-22 158.0 14.5 127 45-173 8-149 (162)
4 2ktr_A Sequestosome-1; autopha 99.7 2.8E-18 9.7E-23 157.5 10.2 79 259-338 19-116 (117)
5 2hr2_A Hypothetical protein; a 99.7 9.1E-18 3.1E-22 162.7 11.2 125 45-171 8-151 (159)
6 3upv_A Heat shock protein STI1 99.7 2.1E-16 7.1E-21 140.4 16.6 117 47-169 3-125 (126)
7 4gcn_A Protein STI-1; structur 99.7 1.8E-16 6.2E-21 144.0 15.3 114 45-165 5-125 (127)
8 3sz7_A HSC70 cochaperone (SGT) 99.7 1.3E-15 4.6E-20 141.8 15.2 120 46-171 9-130 (164)
9 2fbn_A 70 kDa peptidylprolyl i 99.6 5.5E-15 1.9E-19 141.8 19.2 140 30-173 22-173 (198)
10 1vd2_A Protein kinase C, IOTA 99.6 7E-16 2.4E-20 135.7 10.4 78 259-336 5-86 (89)
11 4ga2_A E3 SUMO-protein ligase 99.6 4.2E-15 1.4E-19 138.5 13.9 117 47-169 30-147 (150)
12 3gyz_A Chaperone protein IPGC; 99.6 1.1E-14 3.8E-19 138.2 16.7 103 48-156 36-138 (151)
13 2vgx_A Chaperone SYCD; alterna 99.6 1.7E-14 5.8E-19 134.6 15.9 118 47-170 20-137 (148)
14 2xcb_A PCRH, regulatory protei 99.6 1.7E-14 5.7E-19 132.0 15.3 117 48-170 18-134 (142)
15 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1E-14 3.5E-19 160.5 16.4 128 44-173 264-402 (457)
16 1p5q_A FKBP52, FK506-binding p 99.6 2.5E-14 8.5E-19 151.0 18.0 128 44-173 143-281 (336)
17 4gyw_A UDP-N-acetylglucosamine 99.6 2.1E-14 7.1E-19 168.1 18.7 155 46-209 7-163 (723)
18 1wmh_B Partitioning defective- 99.6 4E-15 1.4E-19 129.6 9.0 76 259-337 5-84 (86)
19 4ga2_A E3 SUMO-protein ligase 99.6 2.1E-15 7.1E-20 140.6 7.3 140 54-202 3-145 (150)
20 3vtx_A MAMA; tetratricopeptide 99.6 8.1E-14 2.8E-18 130.7 18.2 153 48-209 5-159 (184)
21 3q49_B STIP1 homology and U bo 99.6 4.7E-14 1.6E-18 125.5 15.5 117 48-170 9-130 (137)
22 1elw_A TPR1-domain of HOP; HOP 99.6 1.1E-13 3.7E-18 117.7 17.0 115 47-167 3-117 (118)
23 2lni_A Stress-induced-phosphop 99.6 7.5E-14 2.6E-18 121.9 16.2 117 48-170 16-132 (133)
24 2dba_A Smooth muscle cell asso 99.6 1.6E-13 5.5E-18 122.3 18.4 117 48-167 28-144 (148)
25 4i17_A Hypothetical protein; T 99.5 8.5E-14 2.9E-18 135.3 16.8 150 49-207 8-169 (228)
26 2vyi_A SGTA protein; chaperone 99.5 4.2E-13 1.4E-17 115.8 18.4 120 46-171 10-129 (131)
27 3urz_A Uncharacterized protein 99.5 9.1E-14 3.1E-18 135.6 15.8 117 48-170 4-136 (208)
28 1ihg_A Cyclophilin 40; ppiase 99.5 5.3E-14 1.8E-18 151.4 14.5 129 42-172 217-357 (370)
29 2h6f_A Protein farnesyltransfe 99.5 1.2E-13 4E-18 149.9 17.2 149 46-203 95-246 (382)
30 2if4_A ATFKBP42; FKBP-like, al 99.5 2.1E-14 7.1E-19 151.9 10.8 127 42-170 173-312 (338)
31 2pl2_A Hypothetical conserved 99.5 9.4E-14 3.2E-18 136.4 14.6 151 49-209 6-169 (217)
32 1a17_A Serine/threonine protei 99.5 6.9E-13 2.4E-17 120.4 18.6 118 45-168 10-127 (166)
33 2y4t_A DNAJ homolog subfamily 99.5 2.7E-11 9.2E-16 127.9 33.0 151 47-206 25-192 (450)
34 2pl2_A Hypothetical conserved 99.5 2E-13 6.8E-18 134.1 15.4 152 48-209 39-203 (217)
35 1elr_A TPR2A-domain of HOP; HO 99.5 6.1E-13 2.1E-17 115.2 16.0 119 46-171 2-127 (131)
36 2h6f_A Protein farnesyltransfe 99.5 1E-13 3.6E-18 150.3 13.7 149 48-205 131-288 (382)
37 1hxi_A PEX5, peroxisome target 99.5 2E-13 6.9E-18 123.1 12.6 102 50-157 19-120 (121)
38 2xev_A YBGF; tetratricopeptide 99.5 7.5E-13 2.6E-17 116.4 15.8 117 50-169 4-123 (129)
39 4g1t_A Interferon-induced prot 99.5 2.6E-11 8.8E-16 129.5 29.2 121 48-170 51-186 (472)
40 1na0_A Designed protein CTPR3; 99.5 3.9E-12 1.3E-16 108.8 17.9 116 48-169 9-124 (125)
41 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-12 4.2E-17 153.2 18.2 122 48-175 43-164 (723)
42 4i17_A Hypothetical protein; T 99.4 1.3E-12 4.6E-17 126.8 15.4 117 50-172 44-169 (228)
43 1q1o_A Cell division control p 99.4 1.8E-13 6E-18 122.1 7.7 67 261-327 6-86 (98)
44 2c2l_A CHIP, carboxy terminus 99.4 2E-12 6.7E-17 132.7 14.1 102 48-155 4-105 (281)
45 3hym_B Cell division cycle pro 99.4 9.7E-11 3.3E-15 117.2 25.5 117 50-172 24-141 (330)
46 2ho1_A Type 4 fimbrial biogene 99.4 5.1E-12 1.8E-16 123.1 15.6 154 47-209 36-193 (252)
47 3vtx_A MAMA; tetratricopeptide 99.4 1.1E-11 3.9E-16 116.0 17.3 131 48-184 39-171 (184)
48 2q7f_A YRRB protein; TPR, prot 99.4 2E-12 6.8E-17 124.4 12.4 116 49-170 58-173 (243)
49 1pqs_A Cell division control p 99.4 4.8E-13 1.6E-17 114.8 6.4 65 270-334 2-74 (77)
50 3as5_A MAMA; tetratricopeptide 99.4 9.9E-12 3.4E-16 113.3 15.3 152 47-207 7-160 (186)
51 4gco_A Protein STI-1; structur 99.4 1.6E-12 5.5E-17 118.1 9.6 119 73-200 4-124 (126)
52 3k9i_A BH0479 protein; putativ 99.4 1.2E-12 4E-17 115.8 8.0 103 60-168 2-107 (117)
53 3ieg_A DNAJ homolog subfamily 99.3 1.3E-11 4.5E-16 124.4 16.5 149 48-205 3-168 (359)
54 2q7f_A YRRB protein; TPR, prot 99.3 3.3E-11 1.1E-15 115.9 18.5 158 47-213 22-181 (243)
55 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.4E-11 4.8E-16 117.5 15.5 130 46-184 4-151 (213)
56 1zu2_A Mitochondrial import re 99.3 2.1E-12 7.2E-17 125.0 9.8 104 60-169 14-138 (158)
57 2e2e_A Formate-dependent nitri 99.3 1.6E-11 5.4E-16 114.8 15.5 114 48-167 44-160 (177)
58 3ieg_A DNAJ homolog subfamily 99.3 3.3E-11 1.1E-15 121.5 18.8 122 48-171 234-355 (359)
59 3uq3_A Heat shock protein STI1 99.3 1.2E-11 4E-16 119.5 14.6 150 47-206 4-188 (258)
60 3urz_A Uncharacterized protein 99.3 2.1E-11 7.3E-16 118.8 16.6 78 53-136 59-136 (208)
61 2kck_A TPR repeat; tetratricop 99.3 7.5E-12 2.6E-16 105.6 11.6 101 50-156 8-111 (112)
62 2bkf_A Zinc-finger protein NBR 99.3 3.7E-12 1.3E-16 110.8 9.7 80 258-338 4-86 (87)
63 2vq2_A PILW, putative fimbrial 99.3 4.3E-11 1.5E-15 113.1 17.7 154 47-209 7-165 (225)
64 3uq3_A Heat shock protein STI1 99.3 2.2E-11 7.7E-16 117.5 15.8 113 47-165 138-256 (258)
65 1wao_1 Serine/threonine protei 99.3 2.8E-12 9.4E-17 142.4 10.5 116 46-167 4-119 (477)
66 3qky_A Outer membrane assembly 99.3 1.9E-11 6.4E-16 121.7 14.9 153 48-206 15-200 (261)
67 1w3b_A UDP-N-acetylglucosamine 99.3 2.4E-11 8.1E-16 126.9 16.2 154 48-210 203-358 (388)
68 2fo7_A Synthetic consensus TPR 99.3 5.4E-11 1.8E-15 102.2 15.7 118 49-172 2-119 (136)
69 3as5_A MAMA; tetratricopeptide 99.3 6.3E-11 2.1E-15 108.0 17.0 120 48-173 42-161 (186)
70 4eqf_A PEX5-related protein; a 99.3 3.3E-11 1.1E-15 124.4 17.0 97 50-152 67-163 (365)
71 4eqf_A PEX5-related protein; a 99.3 2.9E-11 1E-15 124.8 16.4 153 48-209 99-299 (365)
72 1w3b_A UDP-N-acetylglucosamine 99.3 3.1E-11 1.1E-15 126.0 16.7 151 50-209 137-289 (388)
73 4abn_A Tetratricopeptide repea 99.3 9.9E-12 3.4E-16 137.1 13.6 153 48-210 102-277 (474)
74 3gyz_A Chaperone protein IPGC; 99.3 1.4E-12 4.7E-17 123.7 4.8 110 69-184 23-134 (151)
75 1xnf_A Lipoprotein NLPI; TPR, 99.3 9E-11 3.1E-15 114.9 17.8 113 46-164 41-153 (275)
76 3qky_A Outer membrane assembly 99.3 8.2E-11 2.8E-15 117.0 17.7 120 48-170 52-199 (261)
77 1wj6_A KIAA0049 protein, RSGI 99.3 6.4E-12 2.2E-16 111.7 8.1 81 257-338 11-94 (101)
78 3u4t_A TPR repeat-containing p 99.3 2.1E-11 7.2E-16 119.8 12.8 140 49-198 4-149 (272)
79 2vsy_A XCC0866; transferase, g 99.3 5.1E-11 1.7E-15 132.9 17.6 131 48-184 23-158 (568)
80 2vgx_A Chaperone SYCD; alterna 99.3 7.8E-12 2.7E-16 116.5 9.1 117 68-193 7-125 (148)
81 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.7E-11 1.6E-15 113.9 14.5 104 48-157 37-156 (213)
82 2ho1_A Type 4 fimbrial biogene 99.3 1E-10 3.5E-15 113.9 17.1 151 48-207 71-225 (252)
83 2pzi_A Probable serine/threoni 99.3 6.8E-12 2.3E-16 144.9 10.1 143 49-201 434-578 (681)
84 3u4t_A TPR repeat-containing p 99.3 3.8E-11 1.3E-15 118.0 13.9 151 50-206 39-191 (272)
85 2l6j_A TPR repeat-containing p 99.3 4E-12 1.4E-16 108.5 6.0 95 47-147 3-103 (111)
86 1fch_A Peroxisomal targeting s 99.3 7E-11 2.4E-15 121.0 16.3 142 60-210 193-349 (368)
87 4abn_A Tetratricopeptide repea 99.3 3E-11 1E-15 133.3 13.8 152 48-209 137-310 (474)
88 2yhc_A BAMD, UPF0169 lipoprote 99.3 7.6E-11 2.6E-15 115.8 15.2 110 48-160 4-134 (225)
89 2e2e_A Formate-dependent nitri 99.2 3.2E-11 1.1E-15 112.7 11.7 130 55-193 17-151 (177)
90 2y4t_A DNAJ homolog subfamily 99.2 1.5E-10 5.1E-15 122.2 18.1 124 48-173 257-380 (450)
91 3hym_B Cell division cycle pro 99.2 1.4E-10 4.9E-15 116.0 17.0 158 48-211 90-256 (330)
92 1fch_A Peroxisomal targeting s 99.2 2.8E-10 9.6E-15 116.5 18.7 96 50-151 66-161 (368)
93 2vq2_A PILW, putative fimbrial 99.2 3E-10 1E-14 107.3 16.7 131 48-184 42-177 (225)
94 2pzi_A Probable serine/threoni 99.2 1E-10 3.5E-15 135.1 16.1 142 59-209 402-552 (681)
95 2xcb_A PCRH, regulatory protei 99.2 3.5E-11 1.2E-15 109.8 9.1 116 69-193 5-122 (142)
96 2kat_A Uncharacterized protein 99.2 1.9E-10 6.5E-15 100.5 13.1 100 65-170 2-103 (115)
97 2gw1_A Mitochondrial precursor 99.2 2.8E-10 9.4E-15 121.5 16.4 105 46-157 4-108 (514)
98 3fp2_A TPR repeat-containing p 99.2 4E-10 1.4E-14 121.4 16.8 152 45-206 240-393 (537)
99 3cv0_A Peroxisome targeting si 99.2 5.1E-10 1.8E-14 111.8 16.4 116 49-170 173-300 (327)
100 3mkr_A Coatomer subunit epsilo 99.2 5.7E-10 2E-14 115.3 17.0 137 49-192 131-270 (291)
101 3qou_A Protein YBBN; thioredox 99.1 1.7E-10 5.9E-15 118.4 12.6 150 48-206 117-270 (287)
102 2fo7_A Synthetic consensus TPR 99.1 7.6E-10 2.6E-14 95.0 14.5 101 49-155 36-136 (136)
103 3fp2_A TPR repeat-containing p 99.1 2.1E-10 7E-15 123.7 13.4 107 46-159 23-129 (537)
104 1xnf_A Lipoprotein NLPI; TPR, 99.1 3.1E-10 1.1E-14 111.0 13.4 124 59-184 16-141 (275)
105 3cv0_A Peroxisome targeting si 99.1 2.9E-10 1E-14 113.6 12.8 108 49-162 22-129 (327)
106 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.5E-10 2.9E-14 108.3 15.9 126 49-175 42-203 (225)
107 1qqe_A Vesicular transport pro 99.1 3.4E-10 1.2E-14 115.9 13.5 105 47-153 36-149 (292)
108 2r5s_A Uncharacterized protein 99.1 1.8E-10 6.1E-15 108.7 9.9 148 50-207 8-160 (176)
109 2vsy_A XCC0866; transferase, g 99.1 3.1E-10 1E-14 126.6 13.0 135 61-204 2-138 (568)
110 1qqe_A Vesicular transport pro 99.1 7E-10 2.4E-14 113.6 14.4 136 47-184 76-227 (292)
111 1p5q_A FKBP52, FK506-binding p 99.1 4E-11 1.4E-15 126.4 4.8 141 61-210 126-283 (336)
112 3sz7_A HSC70 cochaperone (SGT) 99.1 1.7E-09 5.9E-14 100.3 14.3 105 84-193 9-115 (164)
113 3edt_B KLC 2, kinesin light ch 99.1 8.7E-10 3E-14 107.2 12.1 125 46-173 41-186 (283)
114 2l6j_A TPR repeat-containing p 99.0 2E-09 6.7E-14 91.7 12.7 88 86-175 4-97 (111)
115 2xpi_A Anaphase-promoting comp 99.0 3.6E-09 1.2E-13 116.1 17.4 159 48-212 373-537 (597)
116 4gcn_A Protein STI-1; structur 99.0 5.9E-10 2E-14 100.9 9.1 87 84-172 6-99 (127)
117 2xpi_A Anaphase-promoting comp 99.0 2.6E-09 8.7E-14 117.3 15.9 157 48-213 407-572 (597)
118 4g1t_A Interferon-induced prot 99.0 9.3E-10 3.2E-14 117.4 12.1 157 48-207 94-263 (472)
119 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.1E-10 3.9E-15 128.4 4.9 139 62-209 248-403 (457)
120 2gw1_A Mitochondrial precursor 99.0 9E-10 3.1E-14 117.5 11.7 149 50-207 306-465 (514)
121 4a1s_A PINS, partner of inscut 99.0 1.4E-09 4.8E-14 113.6 12.9 124 46-171 46-181 (411)
122 1na3_A Designed protein CTPR2; 99.0 3.8E-09 1.3E-13 86.8 13.0 79 87-167 10-88 (91)
123 1na3_A Designed protein CTPR2; 99.0 4E-09 1.4E-13 86.7 13.0 85 46-136 7-91 (91)
124 3mkr_A Coatomer subunit epsilo 99.0 4.2E-09 1.5E-13 108.7 16.0 100 57-162 175-275 (291)
125 3rkv_A Putative peptidylprolyl 99.0 1.2E-09 4.3E-14 101.1 10.8 102 85-191 10-131 (162)
126 3upv_A Heat shock protein STI1 99.0 2.5E-09 8.5E-14 94.5 12.2 88 86-175 4-91 (126)
127 3q49_B STIP1 homology and U bo 99.0 3.1E-09 1E-13 94.1 12.8 96 87-184 10-107 (137)
128 2kc7_A BFR218_protein; tetratr 99.0 4.8E-10 1.6E-14 94.9 7.1 89 53-155 5-94 (99)
129 2r5s_A Uncharacterized protein 99.0 1.7E-09 5.7E-14 102.0 11.4 120 48-173 40-161 (176)
130 2kck_A TPR repeat; tetratricop 99.0 2E-09 6.8E-14 90.5 10.0 92 78-175 2-96 (112)
131 3qou_A Protein YBBN; thioredox 99.0 1.8E-09 6.2E-14 110.8 11.4 119 49-173 152-272 (287)
132 2hr2_A Hypothetical protein; a 99.0 2.1E-09 7E-14 104.2 11.0 104 86-194 11-139 (159)
133 3ro2_A PINS homolog, G-protein 99.0 2.7E-09 9.4E-14 105.6 12.1 122 48-171 5-138 (338)
134 1hxi_A PEX5, peroxisome target 99.0 4.6E-09 1.6E-13 94.4 12.2 95 88-184 19-115 (121)
135 3ro3_A PINS homolog, G-protein 99.0 4.8E-09 1.6E-13 92.9 12.1 124 46-171 7-144 (164)
136 1a17_A Serine/threonine protei 98.9 9.1E-09 3.1E-13 93.1 13.4 98 48-151 47-146 (166)
137 3sf4_A G-protein-signaling mod 98.9 5.4E-09 1.8E-13 107.7 12.7 122 48-171 9-142 (406)
138 3ma5_A Tetratricopeptide repea 98.9 5.7E-09 2E-13 90.3 11.0 87 77-169 2-90 (100)
139 2fbn_A 70 kDa peptidylprolyl i 98.9 1.1E-09 3.7E-14 104.8 7.0 141 60-209 16-174 (198)
140 3nf1_A KLC 1, kinesin light ch 98.9 2.3E-09 7.7E-14 106.3 9.2 126 46-173 25-170 (311)
141 3ulq_A Response regulator aspa 98.9 5.5E-09 1.9E-13 109.7 12.5 126 46-173 141-281 (383)
142 2lni_A Stress-induced-phosphop 98.9 9.9E-09 3.4E-13 89.1 12.1 114 85-203 15-130 (133)
143 3edt_B KLC 2, kinesin light ch 98.9 4.4E-09 1.5E-13 102.2 10.9 119 46-167 83-223 (283)
144 1elw_A TPR1-domain of HOP; HOP 98.9 1.9E-08 6.4E-13 85.0 13.4 102 86-192 4-107 (118)
145 2vyi_A SGTA protein; chaperone 98.9 2.6E-08 8.9E-13 85.5 13.5 116 85-205 11-128 (131)
146 2ond_A Cleavage stimulation fa 98.9 1.1E-08 3.7E-13 105.1 13.0 147 50-205 52-217 (308)
147 2ond_A Cleavage stimulation fa 98.9 2.1E-08 7.3E-13 102.9 14.7 130 49-183 100-232 (308)
148 1dce_A Protein (RAB geranylger 98.9 2.1E-08 7.3E-13 114.1 16.1 147 48-203 63-238 (567)
149 1dce_A Protein (RAB geranylger 98.9 4.7E-08 1.6E-12 111.4 18.5 147 50-205 30-192 (567)
150 1na0_A Designed protein CTPR3; 98.9 3.5E-08 1.2E-12 83.9 13.3 111 86-201 9-121 (125)
151 1ouv_A Conserved hypothetical 98.8 5.2E-08 1.8E-12 96.9 16.3 109 48-168 6-122 (273)
152 3u3w_A Transcriptional activat 98.8 1.2E-08 4.2E-13 103.8 12.0 122 46-170 113-250 (293)
153 3ulq_A Response regulator aspa 98.8 1.8E-08 6.2E-13 105.7 13.1 106 46-153 182-295 (383)
154 3nf1_A KLC 1, kinesin light ch 98.8 1.5E-08 5E-13 100.5 11.4 125 46-173 67-212 (311)
155 3dra_A Protein farnesyltransfe 98.8 6.6E-08 2.3E-12 102.3 16.6 151 48-205 67-234 (306)
156 3q15_A PSP28, response regulat 98.8 3.3E-08 1.1E-12 103.9 14.3 107 46-154 180-293 (378)
157 3q15_A PSP28, response regulat 98.8 1.8E-08 6.2E-13 105.9 12.1 124 46-171 139-276 (378)
158 2ifu_A Gamma-SNAP; membrane fu 98.8 2E-08 6.9E-13 103.4 12.2 123 47-172 75-211 (307)
159 3u3w_A Transcriptional activat 98.8 2.3E-08 7.7E-13 101.8 12.3 159 46-206 73-251 (293)
160 1oey_J P40-PHOX, neutrophil cy 98.8 1.1E-08 3.8E-13 91.0 8.5 70 268-338 17-96 (107)
161 2qfc_A PLCR protein; TPR, HTH, 98.8 6.5E-08 2.2E-12 98.4 15.5 164 45-210 72-255 (293)
162 2ifu_A Gamma-SNAP; membrane fu 98.8 2E-08 7E-13 103.4 11.7 108 46-157 114-229 (307)
163 2qfc_A PLCR protein; TPR, HTH, 98.8 2.3E-08 7.9E-13 101.8 11.9 116 51-170 118-250 (293)
164 1elr_A TPR2A-domain of HOP; HO 98.8 3.9E-08 1.3E-12 84.6 11.5 98 85-184 3-109 (131)
165 2kc7_A BFR218_protein; tetratr 98.8 4.1E-08 1.4E-12 82.9 11.0 77 90-168 4-83 (99)
166 3dra_A Protein farnesyltransfe 98.8 6.4E-08 2.2E-12 102.4 15.0 150 50-205 105-272 (306)
167 3ro3_A PINS homolog, G-protein 98.8 3.8E-08 1.3E-12 87.1 11.2 106 47-154 48-161 (164)
168 2xev_A YBGF; tetratricopeptide 98.8 5.7E-08 2E-12 84.9 11.9 95 88-184 4-106 (129)
169 3sf4_A G-protein-signaling mod 98.8 2.7E-08 9.2E-13 102.4 11.2 127 47-175 186-326 (406)
170 2if4_A ATFKBP42; FKBP-like, al 98.8 7.4E-09 2.5E-13 109.3 6.8 103 50-158 232-335 (338)
171 3gw4_A Uncharacterized protein 98.7 3.4E-08 1.2E-12 92.5 10.7 124 47-172 25-163 (203)
172 2dba_A Smooth muscle cell asso 98.7 7.4E-08 2.5E-12 85.4 12.1 101 87-192 29-134 (148)
173 1ouv_A Conserved hypothetical 98.7 1.8E-07 6.2E-12 93.0 16.2 108 49-168 39-158 (273)
174 1wao_1 Serine/threonine protei 98.7 1.1E-08 3.6E-13 113.6 6.8 94 48-147 40-135 (477)
175 3ro2_A PINS homolog, G-protein 98.7 5.3E-08 1.8E-12 96.3 9.8 124 48-173 183-320 (338)
176 3dss_A Geranylgeranyl transfer 98.7 3.5E-07 1.2E-11 98.0 16.6 147 49-202 65-238 (331)
177 4a1s_A PINS, partner of inscut 98.7 4.9E-08 1.7E-12 101.9 9.7 127 47-175 222-362 (411)
178 3n71_A Histone lysine methyltr 98.7 3E-07 1E-11 103.3 16.5 118 43-162 304-438 (490)
179 3k9i_A BH0479 protein; putativ 98.6 1.6E-07 5.5E-12 82.6 11.2 80 46-131 25-104 (117)
180 2c2l_A CHIP, carboxy terminus 98.6 1.2E-07 4.1E-12 97.0 11.9 96 87-184 5-102 (281)
181 3q7a_A Farnesyltransferase alp 98.6 1.4E-07 4.7E-12 101.9 12.6 136 58-202 64-212 (349)
182 1ihg_A Cyclophilin 40; ppiase 98.6 8.5E-08 2.9E-12 103.1 10.7 118 85-207 222-357 (370)
183 1pc2_A Mitochondria fission pr 98.6 2.2E-07 7.4E-12 89.4 12.4 103 64-172 14-121 (152)
184 3qww_A SET and MYND domain-con 98.6 4.2E-07 1.4E-11 100.6 16.2 120 43-164 293-429 (433)
185 1oey_A P67-PHOX, neutrophil cy 98.6 7.7E-08 2.6E-12 83.5 8.1 78 258-338 3-82 (83)
186 3q7a_A Farnesyltransferase alp 98.6 7.5E-07 2.6E-11 96.2 17.5 117 48-169 88-214 (349)
187 3gw4_A Uncharacterized protein 98.6 2.8E-07 9.7E-12 86.2 12.1 106 46-153 64-178 (203)
188 3dss_A Geranylgeranyl transfer 98.6 8.7E-07 3E-11 95.0 15.7 150 46-204 24-192 (331)
189 3ma5_A Tetratricopeptide repea 98.6 3.6E-07 1.2E-11 78.8 10.4 82 48-135 7-90 (100)
190 3rjv_A Putative SEL1 repeat pr 98.5 4.3E-07 1.5E-11 88.8 12.1 144 48-203 18-174 (212)
191 3rjv_A Putative SEL1 repeat pr 98.5 3.8E-07 1.3E-11 89.2 11.3 111 48-168 50-174 (212)
192 3qwp_A SET and MYND domain-con 98.5 1.1E-06 3.8E-11 96.8 16.1 119 46-166 285-420 (429)
193 1zu2_A Mitochondrial import re 98.5 9.2E-07 3.1E-11 85.5 13.5 102 430-562 13-120 (158)
194 4f3v_A ESX-1 secretion system 98.5 6.2E-07 2.1E-11 94.2 12.9 109 50-163 137-248 (282)
195 2ooe_A Cleavage stimulation fa 98.5 1E-06 3.5E-11 97.1 14.0 131 49-184 322-455 (530)
196 2v5f_A Prolyl 4-hydroxylase su 98.5 1E-06 3.5E-11 77.5 11.3 80 48-129 5-87 (104)
197 1hz4_A MALT regulatory protein 98.4 1.5E-06 5.1E-11 90.2 13.8 162 46-209 12-192 (373)
198 2kat_A Uncharacterized protein 98.4 1.4E-06 4.7E-11 75.8 10.2 82 49-136 20-103 (115)
199 2ooe_A Cleavage stimulation fa 98.4 1.5E-06 5.1E-11 95.8 12.6 148 49-205 273-439 (530)
200 3bee_A Putative YFRE protein; 98.3 3.1E-06 1.1E-10 74.0 10.9 76 78-157 2-78 (93)
201 2v5f_A Prolyl 4-hydroxylase su 98.3 6.3E-06 2.2E-10 72.4 12.5 82 87-170 6-94 (104)
202 1hz4_A MALT regulatory protein 98.3 3.5E-06 1.2E-10 87.4 12.7 123 85-209 13-153 (373)
203 1ip9_A BEM1 protein; ubiquitin 98.3 1.4E-06 4.9E-11 75.4 6.7 64 260-325 12-76 (85)
204 1klx_A Cysteine rich protein B 98.2 1.3E-05 4.3E-10 73.8 12.8 100 54-163 31-136 (138)
205 4f3v_A ESX-1 secretion system 98.2 2.1E-06 7.1E-11 90.2 8.2 129 49-184 103-238 (282)
206 3n71_A Histone lysine methyltr 98.2 8.6E-06 2.9E-10 91.4 12.4 103 46-150 349-463 (490)
207 3ly7_A Transcriptional activat 98.1 1.5E-05 5.3E-10 86.6 13.7 132 48-184 196-340 (372)
208 2xm6_A Protein corresponding t 98.1 2.2E-05 7.7E-10 85.5 13.0 109 48-168 291-411 (490)
209 2xm6_A Protein corresponding t 98.0 6.8E-05 2.3E-09 81.7 16.3 109 48-168 39-159 (490)
210 1nzn_A CGI-135 protein, fissio 98.0 3.6E-05 1.2E-09 71.8 11.7 104 62-171 15-123 (126)
211 4b4t_Q 26S proteasome regulato 98.0 6.2E-05 2.1E-09 79.1 13.7 125 46-172 53-191 (434)
212 3e4b_A ALGK; tetratricopeptide 98.0 5.7E-05 2E-09 82.6 13.6 133 52-202 217-365 (452)
213 2npt_A Dual specificity mitoge 97.9 2.9E-05 9.8E-10 68.1 7.7 64 263-326 19-83 (106)
214 3e4b_A ALGK; tetratricopeptide 97.9 6.1E-05 2.1E-09 82.4 12.2 108 51-167 179-294 (452)
215 1klx_A Cysteine rich protein B 97.8 0.00015 5E-09 66.6 11.3 93 62-168 9-105 (138)
216 3mv2_B Coatomer subunit epsilo 97.8 9.7E-05 3.3E-09 78.6 11.0 63 51-119 103-167 (310)
217 3u64_A Protein TP_0956; tetrat 97.7 0.00012 4.1E-09 77.4 10.9 89 64-154 179-272 (301)
218 4b4t_Q 26S proteasome regulato 97.7 8.9E-05 3E-09 77.9 8.7 100 53-154 100-207 (434)
219 1xi4_A Clathrin heavy chain; a 97.6 0.00022 7.5E-09 88.5 12.8 106 50-169 1197-1327(1630)
220 1b89_A Protein (clathrin heavy 97.6 0.00014 4.9E-09 80.8 9.6 104 50-169 124-254 (449)
221 2cu1_A Mitogen-activated prote 97.6 0.0003 1E-08 62.6 9.4 76 260-338 8-86 (103)
222 3bee_A Putative YFRE protein; 97.5 0.00038 1.3E-08 60.6 9.3 67 49-121 7-76 (93)
223 3qwp_A SET and MYND domain-con 97.4 0.00038 1.3E-08 76.6 10.4 88 46-135 327-426 (429)
224 3o48_A Mitochondria fission 1 97.4 0.00068 2.3E-08 63.8 10.0 85 87-171 41-127 (134)
225 3mv2_B Coatomer subunit epsilo 97.4 0.00066 2.3E-08 72.2 11.2 103 53-164 181-295 (310)
226 1pc2_A Mitochondria fission pr 97.4 0.00046 1.6E-08 66.3 8.9 78 49-131 33-114 (152)
227 1y8m_A FIS1; mitochondria, unk 97.4 0.00093 3.2E-08 63.6 10.4 86 87-172 40-127 (144)
228 3qww_A SET and MYND domain-con 97.3 0.00097 3.3E-08 73.7 10.8 76 46-123 338-422 (433)
229 3ffl_A Anaphase-promoting comp 97.0 0.0042 1.4E-07 60.5 11.2 113 50-165 22-164 (167)
230 1xi4_A Clathrin heavy chain; a 97.0 0.0029 9.8E-08 78.8 12.4 96 52-154 1053-1166(1630)
231 2jrh_A Mitogen-activated prote 96.4 0.023 7.8E-07 49.6 10.3 76 260-338 4-82 (94)
232 2c60_A Human mitogen-activated 96.0 0.043 1.5E-06 49.0 10.0 75 260-337 31-108 (111)
233 2ff4_A Probable regulatory pro 96.0 0.099 3.4E-06 56.5 15.1 103 46-150 113-233 (388)
234 2npt_B Mitogen-activated prote 95.9 0.041 1.4E-06 48.5 9.4 76 260-338 20-98 (100)
235 1b89_A Protein (clathrin heavy 95.9 0.003 1E-07 70.4 2.8 132 40-175 140-301 (449)
236 3ly7_A Transcriptional activat 95.7 0.018 6.1E-07 62.6 7.6 77 74-157 269-345 (372)
237 1nzn_A CGI-135 protein, fissio 95.4 0.044 1.5E-06 51.0 8.1 78 50-131 37-117 (126)
238 3u64_A Protein TP_0956; tetrat 95.3 0.033 1.1E-06 58.9 7.9 82 103-184 178-270 (301)
239 4e6h_A MRNA 3'-END-processing 95.1 0.12 4E-06 60.3 12.8 117 50-170 436-555 (679)
240 1y8m_A FIS1; mitochondria, unk 95.0 0.22 7.5E-06 47.3 11.7 77 50-131 41-120 (144)
241 4e6h_A MRNA 3'-END-processing 94.9 0.11 3.9E-06 60.4 11.8 82 64-151 325-407 (679)
242 3o48_A Mitochondria fission 1 94.7 0.2 6.8E-06 47.1 10.6 78 50-132 42-122 (134)
243 3ffl_A Anaphase-promoting comp 93.8 0.24 8.2E-06 48.2 9.3 84 46-132 61-165 (167)
244 4h7y_A Dual specificity protei 93.5 1.1 3.8E-05 43.1 13.2 92 65-159 36-131 (161)
245 1ya0_A SMG-7 transcript varian 91.7 0.79 2.7E-05 51.6 11.3 80 88-169 154-233 (497)
246 2uy1_A Cleavage stimulation fa 89.4 5.1 0.00017 44.3 15.1 31 51-82 216-246 (493)
247 4gns_B Protein CSD3, chitin bi 89.3 0.85 2.9E-05 53.9 9.1 48 101-148 350-397 (754)
248 3txn_A 26S proteasome regulato 88.4 4.5 0.00015 44.1 13.5 96 53-150 104-209 (394)
249 1zbp_A Hypothetical protein VP 87.9 4.1 0.00014 42.4 12.1 63 56-124 5-67 (273)
250 4b4t_R RPN7, 26S proteasome re 87.9 2.6 8.8E-05 46.0 11.2 100 50-152 133-238 (429)
251 4gns_B Protein CSD3, chitin bi 86.6 1.4 4.8E-05 52.0 8.7 58 50-113 339-396 (754)
252 1ya0_A SMG-7 transcript varian 86.1 3.6 0.00012 46.2 11.4 81 48-134 152-232 (497)
253 4g26_A Pentatricopeptide repea 84.0 19 0.00066 39.9 16.0 101 51-158 108-213 (501)
254 2uy1_A Cleavage stimulation fa 83.7 10 0.00034 42.0 13.5 110 50-169 288-397 (493)
255 3kae_A CDC27, possible protein 83.1 18 0.00063 35.7 13.2 95 53-158 38-150 (242)
256 1zbp_A Hypothetical protein VP 78.4 8.2 0.00028 40.2 9.6 65 101-165 10-74 (273)
257 3kae_A CDC27, possible protein 77.9 51 0.0017 32.6 14.3 71 48-120 62-146 (242)
258 4b4t_P 26S proteasome regulato 74.3 45 0.0015 36.4 14.8 104 46-151 135-247 (445)
259 4g26_A Pentatricopeptide repea 73.2 30 0.001 38.3 13.2 99 63-169 85-188 (501)
260 2w2u_A Hypothetical P60 katani 72.9 5.4 0.00018 34.2 5.5 34 44-77 15-48 (83)
261 2ff4_A Probable regulatory pro 72.5 13 0.00045 39.8 9.8 64 47-116 170-233 (388)
262 2v6y_A AAA family ATPase, P60 71.3 6.1 0.00021 33.7 5.5 34 44-77 7-40 (83)
263 4fhn_B Nucleoporin NUP120; pro 69.2 8.5 0.00029 47.1 8.2 93 52-146 846-962 (1139)
264 1xg8_A Hypothetical protein SA 69.1 3.6 0.00012 37.1 3.6 60 265-326 11-74 (111)
265 3ctv_A HBD-10, 3-hydroxyacyl-C 66.3 12 0.00041 33.0 6.6 70 636-711 25-98 (110)
266 1wfd_A Hypothetical protein 15 64.7 9.7 0.00033 33.1 5.5 34 44-77 11-44 (93)
267 3mkr_B Coatomer subunit alpha; 64.5 1.3E+02 0.0043 32.0 14.9 120 50-170 104-245 (320)
268 2v6x_A Vacuolar protein sortin 62.3 12 0.0004 31.7 5.5 34 44-77 9-42 (85)
269 4h7y_A Dual specificity protei 61.3 33 0.0011 33.0 8.9 102 76-184 7-124 (161)
270 3mkq_A Coatomer beta'-subunit; 60.6 35 0.0012 38.4 10.6 58 87-146 682-747 (814)
271 3mkq_A Coatomer beta'-subunit; 60.3 89 0.003 35.1 13.9 27 48-74 681-707 (814)
272 2cpt_A SKD1 protein, vacuolar 60.3 16 0.00056 33.2 6.3 34 44-77 14-47 (117)
273 4a5x_A MITD1, MIT domain-conta 57.6 15 0.0005 31.6 5.3 32 46-77 14-45 (86)
274 4b4t_S RPN3, 26S proteasome re 57.1 15 0.00052 41.5 6.7 70 85-156 230-304 (523)
275 4b6w_A Tubulin-specific chaper 56.5 22 0.00074 30.3 6.1 66 274-341 19-85 (86)
276 1wjn_A Tubulin-folding protein 55.4 27 0.00092 29.9 6.7 71 268-341 21-94 (97)
277 3mkq_B Coatomer subunit alpha; 50.5 1.2E+02 0.004 29.5 11.0 20 128-147 95-114 (177)
278 2ijq_A Hypothetical protein; s 49.5 48 0.0016 31.8 8.0 67 50-116 34-103 (161)
279 2eel_A Cell death activator CI 47.8 33 0.0011 30.0 5.9 57 258-319 7-64 (91)
280 3mv2_A Coatomer subunit alpha; 47.8 2.8E+02 0.0096 29.4 15.6 117 51-170 117-254 (325)
281 3txn_A 26S proteasome regulato 47.2 73 0.0025 34.6 10.0 105 45-150 16-127 (394)
282 2vkj_A TM1634; membrane protei 45.0 56 0.0019 28.7 6.8 53 46-99 51-103 (106)
283 3mog_A Probable 3-hydroxybutyr 44.5 21 0.00073 39.7 5.3 62 637-711 396-468 (483)
284 3ax2_A Mitochondrial import re 44.4 50 0.0017 27.7 6.3 35 48-82 17-51 (73)
285 2cwy_A Hypothetical protein TT 43.0 43 0.0015 29.1 6.0 63 52-116 5-67 (94)
286 1qsa_A Protein (soluble lytic 42.9 54 0.0018 37.7 8.5 49 102-150 299-347 (618)
287 1tif_A IF3-N, translation init 39.3 22 0.00074 30.3 3.3 42 301-349 16-58 (78)
288 2crb_A Nuclear receptor bindin 38.6 67 0.0023 28.4 6.3 33 45-77 12-44 (97)
289 3spa_A Mtrpol, DNA-directed RN 38.4 2.4E+02 0.0081 34.8 13.2 102 48-156 127-237 (1134)
290 1wy6_A Hypothetical protein ST 35.8 1.4E+02 0.0049 28.5 8.6 50 102-151 105-154 (172)
291 2kj6_A Tubulin folding cofacto 34.6 1.7E+02 0.0057 25.4 8.4 80 260-341 14-97 (97)
292 3dde_A TENA/THI-4 protein, dom 34.6 71 0.0024 31.6 6.9 57 387-443 145-208 (239)
293 2wpv_A GET4, UPF0363 protein Y 34.3 4.3E+02 0.015 27.6 13.6 103 44-146 29-158 (312)
294 2rdz_A Cytochrome C-552; decah 33.9 2.5E+02 0.0084 31.0 11.7 82 509-608 337-420 (452)
295 3mkq_B Coatomer subunit alpha; 33.2 81 0.0028 30.6 6.8 42 102-148 19-60 (177)
296 1om2_A Protein (mitochondrial 33.2 88 0.003 27.5 6.3 37 46-82 18-54 (95)
297 2cfu_A SDSA1; SDS-hydrolase, l 33.0 85 0.0029 36.2 8.1 52 123-174 450-501 (658)
298 2o8p_A 14-3-3 domain containin 32.9 1.2E+02 0.004 30.7 8.1 57 60-117 137-197 (227)
299 3t5v_B Nuclear mRNA export pro 31.8 95 0.0032 34.4 7.9 91 63-155 141-254 (455)
300 4gq2_M Nucleoporin NUP120; bet 31.6 1.7E+02 0.0059 35.0 10.8 97 54-160 816-936 (950)
301 3lpz_A GET4 (YOR164C homolog); 30.9 5.1E+02 0.017 27.5 13.3 100 45-145 32-159 (336)
302 1ef1_A Moesin; membrane, FERM 30.0 78 0.0027 32.1 6.5 54 260-313 1-56 (294)
303 3ax2_A Mitochondrial import re 29.5 1.2E+02 0.0042 25.3 6.4 39 126-164 21-59 (73)
304 3lxu_X Tripeptidyl-peptidase 2 29.4 2.8E+02 0.0097 34.9 12.1 48 46-97 1105-1152(1354)
305 4b4t_P 26S proteasome regulato 29.3 2.5E+02 0.0084 30.5 10.7 70 46-117 175-247 (445)
306 1hyw_A GPW, head-TO-tail joini 29.3 1E+02 0.0036 25.4 5.8 41 283-326 8-50 (68)
307 1zcj_A Peroxisomal bifunctiona 29.2 57 0.002 35.8 5.6 63 637-712 366-444 (463)
308 4fhn_B Nucleoporin NUP120; pro 28.7 2.4E+02 0.0084 34.3 11.6 94 54-157 818-935 (1139)
309 4gq2_M Nucleoporin NUP120; bet 28.6 1.3E+02 0.0044 36.1 9.0 83 52-136 844-950 (950)
310 2crb_A Nuclear receptor bindin 27.9 71 0.0024 28.2 4.7 40 123-163 16-62 (97)
311 4b4t_R RPN7, 26S proteasome re 27.5 1.3E+02 0.0043 32.5 7.9 76 86-163 131-211 (429)
312 1v6e_A Cytoskeleton-associated 26.8 1.4E+02 0.0047 25.3 6.5 78 261-341 8-89 (95)
313 4a5x_A MITD1, MIT domain-conta 26.0 1.3E+02 0.0044 25.6 6.1 25 126-150 20-44 (86)
314 1t0y_A Tubulin folding cofacto 25.2 2E+02 0.0068 25.6 7.5 80 261-343 7-90 (122)
315 2daf_A FLJ35834 protein; hypot 24.9 2E+02 0.0068 26.2 7.4 81 259-346 14-97 (118)
316 3bnj_A Cytochrome C-552; C-typ 24.8 4.1E+02 0.014 29.6 11.5 106 483-608 329-435 (485)
317 3myv_A SUSD superfamily protei 24.3 1.5E+02 0.0052 32.1 7.9 31 121-151 189-219 (454)
318 2npm_A 14-3-3 domain containin 23.8 1.8E+02 0.0063 29.9 7.8 51 65-116 173-226 (260)
319 2pmr_A Uncharacterized protein 23.0 1.5E+02 0.0052 25.6 5.9 39 37-75 28-66 (87)
320 4b4t_S RPN3, 26S proteasome re 22.7 97 0.0033 35.0 5.9 71 47-121 230-303 (523)
321 2br9_A 14-3-3E, 14-3-3 protein 22.7 2E+02 0.007 29.0 7.8 50 65-115 147-200 (234)
322 2zjd_A Microtubule-associated 22.7 68 0.0023 29.7 3.9 32 270-301 53-86 (130)
323 3ubr_A Cytochrome C-552; DECA- 22.0 4.9E+02 0.017 28.7 11.2 83 508-608 324-408 (439)
324 1whv_A Poly(A)-specific ribonu 21.8 1.3E+02 0.0044 26.8 5.3 61 271-335 18-78 (100)
325 2rpa_A Katanin P60 ATPase-cont 21.8 2E+02 0.0067 24.4 6.3 45 125-169 15-65 (78)
326 3uzd_A 14-3-3 protein gamma; s 21.8 2.2E+02 0.0074 29.1 7.8 49 65-114 148-200 (248)
327 2pjh_A Protein NPL4, nuclear p 21.8 77 0.0026 26.4 3.8 41 263-303 7-48 (80)
328 3iqu_A 14-3-3 protein sigma; s 21.7 2.2E+02 0.0074 28.9 7.7 50 65-115 150-203 (236)
329 2dyb_A Neutrophil cytosol fact 21.7 1.8E+02 0.0062 30.4 7.5 60 278-338 265-330 (341)
330 2kvz_A ISPE; structural genomi 21.6 60 0.0021 27.9 3.1 20 293-312 3-22 (85)
331 2dl1_A Spartin; SPG20, MIT, st 21.5 60 0.002 29.7 3.2 61 102-170 17-81 (116)
332 3kez_A Putative sugar binding 21.4 1.8E+02 0.0062 31.6 7.7 31 121-151 195-225 (461)
333 1o9d_A 14-3-3-like protein C; 21.3 2.2E+02 0.0075 29.2 7.8 50 65-115 152-205 (260)
334 3ctr_A Poly(A)-specific ribonu 21.2 1.1E+02 0.0037 27.3 4.7 60 271-334 8-67 (101)
335 3ubw_A 14-3-3E, 14-3-3 protein 21.0 2.3E+02 0.0078 29.2 7.8 50 65-115 173-226 (261)
336 2oo2_A Hypothetical protein AF 20.9 1.3E+02 0.0045 26.0 5.1 34 42-75 29-62 (86)
337 1f0y_A HCDH, L-3-hydroxyacyl-C 20.7 87 0.003 31.8 4.7 67 638-710 214-285 (302)
338 3lew_A SUSD-like carbohydrate 20.6 1.9E+02 0.0066 31.7 7.8 31 121-151 202-232 (495)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=3.2e-19 Score=162.60 Aligned_cols=115 Identities=33% Similarity=0.557 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+.|..++++|+.+|+.|+|++|+..|++||+++|.++ .+|+++|.||+++ |++++|+.+|++||+++|+++.+|
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4467999999999999999999999999999999998 6999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
+++|.+|..+|++++|+.+|+++++++|+|..++..|+.|.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998774
No 2
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.77 E-value=7.8e-19 Score=158.10 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=70.9
Q ss_pred cceeeeee------cCceEEEeccCC-----------CCHHHHHHHHHhhcCCCCc--eeEEeeCCCCCeeeecCchHHH
Q 005002 260 TKTVKLVF------GDDIRWAQLPVN-----------CSIRLVRDIVRDRFPSLKG--VLVKYKDQEGDLVTITTTDELR 320 (720)
Q Consensus 260 ~~~~K~~~------g~DiR~~~~~~~-----------~s~~~L~~~v~~kF~~~~~--~~ikYkDedGDlVtitsd~dl~ 320 (720)
+.+||+.+ +.|||||+++.+ .||.+|+++|+++||++++ |+|+|+|+||||||||||+||+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~ 84 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELT 84 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHH
Confidence 56899999 689999999643 4899999999999998875 9999999999999999999999
Q ss_pred HHHHhhcCCCceEEEEEe
Q 005002 321 FVEMLFNSQSFLRLYIAE 338 (720)
Q Consensus 321 ~A~~~~~~~~~~rL~v~e 338 (720)
+|++++. .+.|||||++
T Consensus 85 ~Al~~~~-~~~lRlyVke 101 (102)
T 2kkc_A 85 MAMSYVK-DDIFRIYIKE 101 (102)
T ss_dssp HHHHHCC-SSEEEEEEEE
T ss_pred HHHHhcC-CCeEEEEEEc
Confidence 9999985 7899999986
No 3
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.76 E-value=5e-18 Score=158.00 Aligned_cols=127 Identities=27% Similarity=0.382 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCc------chHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL--------LPKNH------IDVAYLRSNMAGCYMQMGLGEFPRAINE 110 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L--------~P~~~------~d~a~l~~NrAa~y~kL~~gdyeeAI~d 110 (720)
++.+..+++.|+.+|+.|+|++|+..|++||.+ .|.+. +..+.+|+|+|.||+++ |+|++|+.+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--~~~~~A~~~ 85 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--GDLHEAEET 85 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence 478999999999999999999999999999999 33321 12357999999999998 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhhc
Q 005002 111 CNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS-SALEVLESVKQSMIEKG 173 (720)
Q Consensus 111 ~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~-~A~~~L~~lk~~l~eka 173 (720)
|++||+++|+++++|+++|.+|..+|+|++|+.+|++++.++|+|. .+...+..+...+.+..
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 78889999988876443
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.75 E-value=2.8e-18 Score=157.47 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=71.5
Q ss_pred ccceeeeeec------CceEEEeccCC-----------CCHHHHHHHHHhhcCCCCc--eeEEeeCCCCCeeeecCchHH
Q 005002 259 VTKTVKLVFG------DDIRWAQLPVN-----------CSIRLVRDIVRDRFPSLKG--VLVKYKDQEGDLVTITTTDEL 319 (720)
Q Consensus 259 ~~~~~K~~~g------~DiR~~~~~~~-----------~s~~~L~~~v~~kF~~~~~--~~ikYkDedGDlVtitsd~dl 319 (720)
-+.+||+.+. .|||||+++.+ .||.+|+++|+++||++++ |+|+|+|+||||||||||+||
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL 98 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEEL 98 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHH
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHH
Confidence 4678999996 89999999744 3999999999999998876 999999999999999999999
Q ss_pred HHHHHhhcCCCceEEEEEe
Q 005002 320 RFVEMLFNSQSFLRLYIAE 338 (720)
Q Consensus 320 ~~A~~~~~~~~~~rL~v~e 338 (720)
++|++++. .+.|||||++
T Consensus 99 ~~Al~~~~-~~~lRlyVke 116 (117)
T 2ktr_A 99 TMAMSYVK-DDIFRIYIKE 116 (117)
T ss_dssp HHHHHHCC-SSEEEEEEEE
T ss_pred HHHHHhcC-CCeEEEEEEe
Confidence 99999985 6799999986
No 5
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.73 E-value=9.1e-18 Score=162.74 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------cc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN-------HI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~-------~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
...|..+++.|+.+|+.|+|++|+..|++||+++|++ +. ..+.+|+|+|.|+.++ |+|++|+.+|++||+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L--gr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL--RSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999994 21 1345999999999998 999999999999999
Q ss_pred h-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 117 V-------SSKYSKAL----LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 117 L-------dP~~~KAy----~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+ +|+++++| +++|.+|..+|+|++|+.+|++++.++|++..+...+..+++.+..
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 9 99999999 9999999999999999999999999999999999999999887753
No 6
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.1e-16 Score=140.41 Aligned_cols=117 Identities=22% Similarity=0.356 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..++..|+.++..|+|++|+..|++++.++|.++ .+|+++|.||+.+ |+|++|+.+|+++++++|+++.+++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 567899999999999999999999999999999998 6999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSME------PNNSSALEVLESVKQSM 169 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~Ld------P~n~~A~~~L~~lk~~l 169 (720)
++|.+|..+|++++|+..|++++.++ |++..++..+..+...+
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 99999999999988764
No 7
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=1.8e-16 Score=144.03 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--- 121 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--- 121 (720)
.+.|..+++.|+.+|+.|+|++|+..|++||+++|+++ .+|+|+|.||+.+ |+|++|+.+|++||+++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~----~~~~nlg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----TFYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHh--hhHHHHHHHHHHHHHhCcccchh
Confidence 46788999999999999999999999999999999998 6999999999998 99999999999999999865
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 122 ----SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 122 ----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
.++|+++|.++..+|+|++|+..|+++|.++|+ +.....|..+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 468999999999999999999999999999885 4544444443
No 8
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=1.3e-15 Score=141.80 Aligned_cols=120 Identities=28% Similarity=0.324 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|+.++..|+|++|+..|++++.++|.+. .+|+++|.||+.+ |+|++|+.+|+++|+++|+++.+|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----IYLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4567899999999999999999999999999999988 6999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhhh
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS--ALEVLESVKQSMIE 171 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~--A~~~L~~lk~~l~e 171 (720)
+++|.+|..+|++++|+.+|++++.++|++.. ....+..++..+.+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999977 66677777776653
No 9
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=5.5e-15 Score=141.82 Aligned_cols=140 Identities=24% Similarity=0.363 Sum_probs=124.4
Q ss_pred CCCCCCCCChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch------------HHHHHHHHHHHHH
Q 005002 30 DRGSSKAFDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID------------VAYLRSNMAGCYM 97 (720)
Q Consensus 30 ~~~ss~a~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d------------~a~l~~NrAa~y~ 97 (720)
.....+.++.... ++.+..+...|+.++..|+|++|+..|.+|+.+.|.++.. ...++.++|.||+
T Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 99 (198)
T 2fbn_A 22 AKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99 (198)
T ss_dssp CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444 4889999999999999999999999999999999987610 1369999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 98 QMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 98 kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
.+ |+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|++++.++|++..++..+..+...+++..
T Consensus 100 ~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 100 KN--KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred Hh--cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 98 999999999999999999999999999999999999999999999999999999999999999999886543
No 10
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=99.64 E-value=7e-16 Score=135.70 Aligned_cols=78 Identities=24% Similarity=0.223 Sum_probs=69.2
Q ss_pred ccceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCC--CceeEEeeCCCCCeeeecCchHHHHHHHhhcC--CCceEE
Q 005002 259 VTKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSL--KGVLVKYKDQEGDLVTITTTDELRFVEMLFNS--QSFLRL 334 (720)
Q Consensus 259 ~~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~--~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~--~~~~rL 334 (720)
...+||+.|++|||++.+|.+++|.+|.++|+.+|+.. .+|+|||+|||||+|||+|++||.+|+.+... ...+.|
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~i 84 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLI 84 (89)
T ss_dssp SCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEE
T ss_pred CeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEE
Confidence 34689999999999999999999999999999999854 66999999999999999999999999998743 445777
Q ss_pred EE
Q 005002 335 YI 336 (720)
Q Consensus 335 ~v 336 (720)
+|
T Consensus 85 hv 86 (89)
T 1vd2_A 85 HV 86 (89)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 11
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.61 E-value=4.2e-15 Score=138.52 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..+++.|+|++|+..|++||+++|+++ .+|+++|.||..+ |++++|+..|.++|+++|+++.+++
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHRFLGLLYELE--ENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CchHHHHHHHHHHHHhCCCCHHHHH
Confidence 344667788888899999999999999999988888 5888899998887 8899999999999999999899999
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 127 KRAQCYKALNRLDFAFRD-VNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d-~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
++|.+|..+|++++|... ++++++++|+|+.+...+.++....
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999988888877665 5888899999888888777776544
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=1.1e-14 Score=138.16 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..+++.|+|++|+..|++++.++|+++ .+|+++|.||..+ |+|++|+..|++|++++|+++.+|++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~----~~~~~lg~~~~~~--g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----DYIMGLAAIYQIK--EQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45899999999999999999999999999999999 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
+|.||..+|++++|+..|++++.+.|+.+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999876
No 13
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=1.7e-14 Score=134.57 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|+|++|+..|++++.++|.++ .+|+++|.||..+ |+|++|+..|++++.++|+++.+++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAM--GQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHH
Confidence 355788999999999999999999999999999998 5999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
.+|.||..+|++++|+..|++++.++|+++.......++...+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999998877777777666554
No 14
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=1.7e-14 Score=132.03 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|+|++|+..|.+++.++|.++ .+|.++|.||..+ |+|++|+..|++++.++|+++.+++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSL--GLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 45788999999999999999999999999999998 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+|.||..+|++++|+..|++++.++|+++.......++...+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999887777777766654
No 15
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1e-14 Score=160.54 Aligned_cols=128 Identities=23% Similarity=0.358 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----------chHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-----------IDVAYLRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-----------~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
....+..+++.|+.+++.|+|.+|+..|++||.++|.+. ...+.+|+|+|.||+++ ++|++|+.+|+
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~ 341 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL--REYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 347889999999999999999999999999999999983 11247999999999998 99999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 113 LALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 113 kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+||+++|+++++|+++|.||..+|+|++|+.+|++++.++|++..++..+..++..+++..
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887543
No 16
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=2.5e-14 Score=150.98 Aligned_cols=128 Identities=29% Similarity=0.397 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----------chHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-----------IDVAYLRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-----------~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
....+..++..|+.+++.|+|++|+..|++|+.++|.+. +..+.+|+|+|.||+++ |+|++|+.+|+
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~ 220 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL--QAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 346788999999999999999999999999999999983 11247999999999998 99999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 113 LALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 113 kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+||+++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..+..++..+++..
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887543
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=2.1e-14 Score=168.13 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+.+.|+.+.++|+|++|+..|++||+++|++. .+|+|+|.+|.++ |++++|+..|++||+++|+++.+|
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~--g~~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQ--GKLQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3467999999999999999999999999999999998 5999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
+++|.+|..+|++++|+..|+++++++|++..++.+++.++..+++...+ ..++..++. |..+.....++.++..
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHh
Confidence 99999999999999999999999999999999999999999999855444 447788888 8888888889988887
Q ss_pred Hhhhhh
Q 005002 204 KVKKKK 209 (720)
Q Consensus 204 k~kkkK 209 (720)
.++...
T Consensus 158 ~g~~~~ 163 (723)
T 4gyw_A 158 VCDWTD 163 (723)
T ss_dssp TTCCTT
T ss_pred cccHHH
Confidence 776544
No 18
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=99.58 E-value=4e-15 Score=129.64 Aligned_cols=76 Identities=26% Similarity=0.341 Sum_probs=69.1
Q ss_pred ccceeeeeecCceEEEeccC--CCCHHHHHHHHHhhcCCCC--ceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEE
Q 005002 259 VTKTVKLVFGDDIRWAQLPV--NCSIRLVRDIVRDRFPSLK--GVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRL 334 (720)
Q Consensus 259 ~~~~~K~~~g~DiR~~~~~~--~~s~~~L~~~v~~kF~~~~--~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL 334 (720)
....||..||.|+|||+++. ..+|.+|..+|++.|+ +. +|+|.|.|+|||||||+||++|.+|++++.+ .+||
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~-L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~p--lLRl 81 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ-IPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP--PLRL 81 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT-CTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS--CEEE
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC-CCCCCEEEEEECCCCCEeeecCHHHHHHHHHhCCC--cEEE
Confidence 34679999999999999974 4899999999999998 65 6999999999999999999999999998844 8999
Q ss_pred EEE
Q 005002 335 YIA 337 (720)
Q Consensus 335 ~v~ 337 (720)
+|+
T Consensus 82 ~Iq 84 (86)
T 1wmh_B 82 LVQ 84 (86)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.57 E-value=2.1e-15 Score=140.61 Aligned_cols=140 Identities=13% Similarity=0.013 Sum_probs=120.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYK 133 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~ 133 (720)
.|..+..+|++++|+..|.+++...|.++ ..++++|.+|+++ |+|++|+..++++|+++|+++.+|+.+|.+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEA--KEYDLAKKYICTYINVQERDPKAHRFLGLLYE 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57788889999999999999999888777 5889999999998 99999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC---hhHHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 134 ALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID---IDEKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 134 ~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a---~~ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
.+|++++|+..|++++.++|++..++..++.+...++....+ ..++...+. |..|......+.++.
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLD 145 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765332 236778888 877766555455443
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=8.1e-14 Score=130.68 Aligned_cols=153 Identities=19% Similarity=0.160 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+.+.|+.++.+|+|++|+..|++||+++|++. .++.++|.||..+ |++++|+..+.+++..+|+++.+++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDI--GLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 45788999999999999999999999999999998 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKV 205 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~ 205 (720)
+|.++...++++.|+..+.+++.++|++..++..++.+...+++...+ ..++...+. |..+.....++.++...+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---PGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---chhhhHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999998855443 346777777 888888888888888777
Q ss_pred hhhh
Q 005002 206 KKKK 209 (720)
Q Consensus 206 kkkK 209 (720)
+..+
T Consensus 156 ~~~~ 159 (184)
T 3vtx_A 156 LRDE 159 (184)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 21
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=4.7e-14 Score=125.45 Aligned_cols=117 Identities=28% Similarity=0.392 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|+|++|+..|.+++.++|.++ .+|+++|.||+.+ |+|++|+..+.++++++|+++.+++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH----HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45889999999999999999999999999999988 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPN-----NSSALEVLESVKQSMI 170 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~-----n~~A~~~L~~lk~~l~ 170 (720)
+|.+|..+|++++|+..|++++.++|+ +..+...+..+.....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 7888888888877653
No 22
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=1.1e-13 Score=117.71 Aligned_cols=115 Identities=30% Similarity=0.445 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|+.+ |+|++|+..+.++++++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCcccHHHHH
Confidence 467889999999999999999999999999999988 5999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
.+|.++..+|++++|+..|++++.++|++..++..+..+..
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998888754
No 23
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.56 E-value=7.5e-14 Score=121.89 Aligned_cols=117 Identities=26% Similarity=0.413 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|+.+ +++++|+..++++++++|+++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKL--LEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHTTT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 45889999999999999999999999999999987 5999999999997 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+|.++..+|++++|+..|++++.++|++..++..+..+...++
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998877553
No 24
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-13 Score=122.29 Aligned_cols=117 Identities=34% Similarity=0.516 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|+|++|+..|++++.+.|++. ....++.++|.||+.+ ++|++|+..|.++++++|+++.+++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLKL--EDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 45788999999999999999999999999999862 2237999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+|.+|..+|++++|+..|++++.++|++..++..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988887753
No 25
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=8.5e-14 Score=135.28 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLP-KNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P-~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
..+...|..++..|+|++|+..|++++.+.| .+. .+++++|.||..+ |+|++|+..|.++++++|+++.+++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNI--KKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHh--hcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 4788999999999999999999999999999 666 5888899999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCC--CCcchhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNS-------SALEVLESVKQSMIEKGID--IDEKMKEFGLDSSG--EAHGALR 196 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~-------~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~--~P~~~~~ 196 (720)
+|.+|..+|++++|+..|++++.++|++. .++..++.+...+++...+ ...+...+. |. .+.....
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHH
Confidence 99999999999999999999999999999 5567777777666644333 335566666 66 6666667
Q ss_pred HHHHHHHHhhh
Q 005002 197 FRKLVKEKVKK 207 (720)
Q Consensus 197 l~~i~k~k~kk 207 (720)
++.++...++.
T Consensus 159 l~~~~~~~~~~ 169 (228)
T 4i17_A 159 LGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777665543
No 26
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=4.2e-13 Score=115.83 Aligned_cols=120 Identities=27% Similarity=0.408 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.+++.++|+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKL--GNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHh--hchHHHHHHHHHHHhcCccCHHHH
Confidence 4577899999999999999999999999999999987 5999999999997 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+.+|.++..+|++++|+..|++++.++|++..++..+..+...+++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999887754
No 27
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.54 E-value=9.1e-14 Score=135.61 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH----------------HHHHHHHcCCCCHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSN----------------MAGCYMQMGLGEFPRAINEC 111 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~N----------------rAa~y~kL~~gdyeeAI~d~ 111 (720)
+..+...|..++..|+|++|+..|++++.++|+++ .+|++ +|.+|..+ |+|++|+..|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~ 77 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTNVDKNSEISSKLATELALAYKKN--RNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----HHHHHHHSCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHhhhcchhhhhHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 45778899999999999999999999999999987 47777 99999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 112 NLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 112 ~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+++|+++|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+....+
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999886654
No 28
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.53 E-value=5.3e-14 Score=151.41 Aligned_cols=129 Identities=27% Similarity=0.456 Sum_probs=116.4
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------cchHHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 42 AMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN------------HIDVAYLRSNMAGCYMQMGLGEFPRAIN 109 (720)
Q Consensus 42 ~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~------------~~d~a~l~~NrAa~y~kL~~gdyeeAI~ 109 (720)
...+..+..++..|+.+++.|+|++|+..|++||.+.|.. .+..+.+|+|+|.||+++ ++|++|+.
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~ 294 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--SDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence 3345889999999999999999999999999999954431 112357999999999998 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 110 ECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 110 d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
+|++||+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++..++..+..++..+++.
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887643
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=1.2e-13 Score=149.93 Aligned_cols=149 Identities=11% Similarity=0.000 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCCCHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGE-FPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gd-yeeAI~d~~kALeLdP~~~KA 124 (720)
..+..+...|..+...|+|++|+..|++||.++|++. .+|++||.+|..+ |+ |++|+..|++||+++|+++.+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~--g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSL--QKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHc--ccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4567889999999999999999999999999999999 6999999999998 86 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
|+.+|.+|..+|++++|+.+|+++|.++|+|..++..++.+...+++...+. ..+...+. |..+..+..++.++.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998655444 47778888 888888888887775
Q ss_pred H
Q 005002 203 E 203 (720)
Q Consensus 203 ~ 203 (720)
.
T Consensus 246 ~ 246 (382)
T 2h6f_A 246 N 246 (382)
T ss_dssp H
T ss_pred H
Confidence 5
No 30
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=2.1e-14 Score=151.90 Aligned_cols=127 Identities=24% Similarity=0.403 Sum_probs=98.2
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-------------hHHHHHHHHHHHHHHcCCCCHHHHH
Q 005002 42 AMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-------------DVAYLRSNMAGCYMQMGLGEFPRAI 108 (720)
Q Consensus 42 ~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-------------d~a~l~~NrAa~y~kL~~gdyeeAI 108 (720)
...+..+..++..|+.+++.|+|.+|+..|.+|+.+.|.+.. ....+|+|+|.||+++ ++|++|+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~--g~~~~A~ 250 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL--KRYDEAI 250 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT--TCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHH
Confidence 334588999999999999999999999999999999997651 0113899999999998 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 109 NECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 109 ~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
.+|++||+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++..++..|..+.....
T Consensus 251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 251 GHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998866543
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=9.4e-14 Score=136.37 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|+|++|+..|++++.++|+++ .++.++|.++..+ |++++|+..++++++++|+++.+++.+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKL--GLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4678899999999999999999999999999998 5999999999997 999999999999999999999999999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchh
Q 005002 129 AQCYKAL-----------NRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGAL 195 (720)
Q Consensus 129 A~Ay~~L-----------GryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~ 195 (720)
|.++..+ |++++|+..|++++.++|++..++..++.+...+++...+. .++...+. ..|....
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHH
Confidence 9999999 99999999999999999999999999999999888554433 35555544 3455566
Q ss_pred hHHHHHHHHhhhhh
Q 005002 196 RFRKLVKEKVKKKK 209 (720)
Q Consensus 196 ~l~~i~k~k~kkkK 209 (720)
.++.++...++...
T Consensus 156 ~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 156 ALAELYLSMGRLDE 169 (217)
T ss_dssp HHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCHHH
Confidence 77777777665544
No 32
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=6.9e-13 Score=120.44 Aligned_cols=118 Identities=26% Similarity=0.430 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
.+.+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.||..+ |+|++|+..+.++++++|.++.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHH
Confidence 47889999999999999999999999999999999988 5999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
++.+|.++..+|++++|+..|++++.++|++..++..+..+...
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 127 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777766443
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.51 E-value=2.7e-11 Score=127.91 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..+++.|+|++|+..|++++...|.+. .+++++|.||+.+ |++++|+..+.++++++|+++.+++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----IAYYRRATVFLAM--GKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 366899999999999999999999999999999987 6999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHH------------HHHhhhhc--cChhHHhhhcCCCCCC
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNS---SALEVLESV------------KQSMIEKG--IDIDEKMKEFGLDSSG 189 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~---~A~~~L~~l------------k~~l~eka--~a~~ek~~~L~~~~P~ 189 (720)
.+|.+|..+|++++|+..|++++.++|++. .++..+..+ ....+... .....+...+. |.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Confidence 999999999999999999999999999998 777766444 33333222 22224444455 55
Q ss_pred CCcchhhHHHHHHHHhh
Q 005002 190 EAHGALRFRKLVKEKVK 206 (720)
Q Consensus 190 ~P~~~~~l~~i~k~k~k 206 (720)
.+.....++.++...++
T Consensus 176 ~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 176 DAELRELRAECFIKEGE 192 (450)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHCCC
Confidence 55555555666555443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=2e-13 Score=134.06 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL-----------GEFPRAINECNLALE 116 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~-----------gdyeeAI~d~~kALe 116 (720)
+..+...|..++..|++++|+..|++++.++|++. .++.++|.+|.. . |++++|+..++++++
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYL----GGYMVLSEAYVA--LYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHH--hhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999998 599999999988 4 799999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcch
Q 005002 117 VSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGA 194 (720)
Q Consensus 117 LdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~ 194 (720)
++|+++.+++.+|.+|..+|++++|+..|++++.++ +++.++..++.+...+++...+ ..++...+. |..+...
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~ 188 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---PKDLDLR 188 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHH
Confidence 999999999999999999999999999999999999 9999999999999999855443 346677777 8888777
Q ss_pred hhHHHHHHHHhhhhh
Q 005002 195 LRFRKLVKEKVKKKK 209 (720)
Q Consensus 195 ~~l~~i~k~k~kkkK 209 (720)
..++.++...++...
T Consensus 189 ~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 189 VRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHHHHHHccCHHH
Confidence 777777766555433
No 35
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.50 E-value=6.1e-13 Score=115.15 Aligned_cols=119 Identities=24% Similarity=0.363 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---- 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---- 121 (720)
+.+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|..+ |+|++|+..+.+++.+.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccccchhH
Confidence 3467889999999999999999999999999999987 5999999999998 99999999999999999877
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+.+++.+|.+|..+|++++|+..|++++.++| +......+..+...+++
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 68889999998887754
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1e-13 Score=150.29 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 48 SQELKEEGNKLFQKRD-HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 48 A~~lKeeGn~lfk~Gd-yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
+..+..+|..+...|+ |++|+..|++||.++|++. .+|++||.+|..+ |+|++|+.+|++||+++|++..+|+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~~g~~~~~~--g~~~eAl~~~~kal~ldP~~~~a~~ 204 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWL--RDPSQELEFIADILNQDAKNYHAWQ 204 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCccCHHHHH
Confidence 4567899999999997 9999999999999999999 6999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh-cc-------ChhHHhhhcCCCCCCCCcchhhHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK-GI-------DIDEKMKEFGLDSSGEAHGALRFR 198 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek-a~-------a~~ek~~~L~~~~P~~P~~~~~l~ 198 (720)
.+|.++..+|++++|+.+|+++|.++|++..++..++.+...+... .. ....+...+. |..+.++..++
T Consensus 205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~---P~~~~a~~~l~ 281 (382)
T 2h6f_A 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV---PHNESAWNYLK 281 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999885433 22 2246677788 88888888888
Q ss_pred HHHHHHh
Q 005002 199 KLVKEKV 205 (720)
Q Consensus 199 ~i~k~k~ 205 (720)
.++...+
T Consensus 282 ~ll~~~g 288 (382)
T 2h6f_A 282 GILQDRG 288 (382)
T ss_dssp HHHTTTC
T ss_pred HHHHccC
Confidence 8776644
No 37
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.49 E-value=2e-13 Score=123.05 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..+++.|++++|+..|++++.++|++. .+|+++|.|+..+ |++++|+..+++|++++|+++.+++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 457789999999999999999999999999998 5999999999998 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
.+|..+|++++|+..|++++.++|++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999998754
No 38
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=7.5e-13 Score=116.40 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~ 126 (720)
.+...|..++..|+|++|+..|.+++...|++. ....+++++|.||+.+ |+|++|+..+.+++..+|++ +.+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-YTPNALYWLGESYYAT--RNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-THHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-ccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 567899999999999999999999999999876 2335899999999998 99999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.+|.+|..+|++++|+..|++++...|++..+...+.++....
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777766543
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.6e-11 Score=129.47 Aligned_cols=121 Identities=16% Similarity=0.056 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-----IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS---- 118 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-----~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd---- 118 (720)
+..+...|..++..|+|++|+..|++|+++.+... +..+.+|.|+|.+|..+ |+|++|+.++++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--GRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhHhcc
Confidence 45678899999999999999999999999854221 12457899999999998 99999999999999873
Q ss_pred ----CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 119 ----SKYSKALLKRAQCYKALN--RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 119 ----P~~~KAy~rrA~Ay~~LG--ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+..+..+..+|.++..+| +|++|+..|++++.++|+++.++..+..+...++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 456889999999988765 6999999999999999999999988888766554
No 40
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=3.9e-12 Score=108.82 Aligned_cols=116 Identities=27% Similarity=0.388 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|++++|+..|.+++...|.+. .++.++|.+|... |++++|+..+.+++.++|.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 45788899999999999999999999999999887 5899999999997 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
+|.+|..+|++++|+..|++++.++|++..++..+..+....
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998887654
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=1.2e-12 Score=153.18 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+.+.|+.+++.|+|++|+..|++||+++|++. .+|+|+|.+|..+ |++++|+..|++||+++|+++.+|++
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~nLg~~l~~~--g~~~~A~~~~~kAl~l~P~~~~a~~~ 116 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA----DAYSNMGNTLKEM--QDVQGALQCYTRAIQINPAFADAHSN 116 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45788999999999999999999999999999998 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a 175 (720)
+|.+|..+|++++|+..|+++++++|++..++..++.++..+++...+
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999999988765443
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.3e-12 Score=126.81 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-------
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS------- 122 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~------- 122 (720)
.+...|..++..|+|++|+..|.+|+.++|.+. .+|.++|.+|..+ |+|++|+..++++++++|+++
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~ 117 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA----NAYIGKSAAYRDM--KNNQEYIATLTEGIKAVPGNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH----HHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 556699999999999999999999999999987 6999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhhh
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPN--NSSALEVLESVKQSMIEK 172 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~--n~~A~~~L~~lk~~l~ek 172 (720)
.+|+.+|.++..+|++++|+..|++++.++|+ +..++..++.+...++..
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999 999999999998876643
No 43
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=99.43 E-value=1.8e-13 Score=122.08 Aligned_cols=67 Identities=10% Similarity=0.240 Sum_probs=60.9
Q ss_pred ceeeeeec--------CceEEEeccCCCCHHHHHHHHHhhcCCC------CceeEEeeCCCCCeeeecCchHHHHHHHhh
Q 005002 261 KTVKLVFG--------DDIRWAQLPVNCSIRLVRDIVRDRFPSL------KGVLVKYKDQEGDLVTITTTDELRFVEMLF 326 (720)
Q Consensus 261 ~~~K~~~g--------~DiR~~~~~~~~s~~~L~~~v~~kF~~~------~~~~ikYkDedGDlVtitsd~dl~~A~~~~ 326 (720)
..||+.|+ +|+|.+.||.+++|.+|.++|++||... +.++|||+|||||+|||.|++||.+|++.+
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 56999999 8899999999999999999999999522 458999999999999999999999999976
Q ss_pred c
Q 005002 327 N 327 (720)
Q Consensus 327 ~ 327 (720)
+
T Consensus 86 ~ 86 (98)
T 1q1o_A 86 A 86 (98)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=2e-12 Score=132.75 Aligned_cols=102 Identities=30% Similarity=0.443 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..++..|+.++..|+|++|+..|++|+.++|.+. .+|+++|.||+.+ |+|++|+.+|++|++++|+++.++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56789999999999999999999999999999988 6999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
+|.+|..+|++++|+..|++++.++|++
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999976
No 45
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.39 E-value=9.7e-11 Score=117.21 Aligned_cols=117 Identities=8% Similarity=0.018 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|+|++|+..|++++..+|.+.. ++..++.|++.+ |++++|+..+.++++.+|+++.+++.+|
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS----CLPVHIGTLVEL--NKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----THHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHHh--hhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4567899999999999999999999999999984 888899999998 9999999999999999999999999999
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 130 QCYKALN-RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 130 ~Ay~~LG-ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
.++..+| ++++|+..|++++.++|++..++..++.+...+++.
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 9999999 999999999999999999999999999988877643
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=5.1e-12 Score=123.11 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.++++++|.+..+++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----DAHAALAVVFQTE--MEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 467899999999999999999999999999999987 5999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLS--MEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~--LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
.+|.+|..+|++++|+..|++++. .+|.+..++..++.+...+++...+ ...+...+. |..+.....++.++.
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHH
Confidence 999999999999999999999999 8899999999999998888754333 335556666 666666666777776
Q ss_pred HHhhhhh
Q 005002 203 EKVKKKK 209 (720)
Q Consensus 203 ~k~kkkK 209 (720)
..++..+
T Consensus 187 ~~g~~~~ 193 (252)
T 2ho1_A 187 KEREYVP 193 (252)
T ss_dssp HTTCHHH
T ss_pred HcCCHHH
Confidence 6555433
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.1e-11 Score=115.97 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|++++|+..|.+++...|.+. .++.++|.++... ++++.|+..+.+++.++|+++.+++.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~ 112 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA----EAYYILGSANFMI--DEKQAAIDALQRAIALNTVYADAYYK 112 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHH
Confidence 44678899999999999999999999999999988 5999999999997 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~ 184 (720)
+|.+|..+|++++|+..|++++.++|++..++..++.+...+++...+.. ++..++.
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999985544433 5555554
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=2e-12 Score=124.40 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.++++++|.++.+++.+
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAA----TAYYGAGNVYVVK--EMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----HHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444555555555555555555555555555544 3555555555554 555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
|.++..+|++++|+..|++++.++|++..++..++.+....+
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 555555555555555555555555555555555555555544
No 49
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=99.37 E-value=4.8e-13 Score=114.78 Aligned_cols=65 Identities=14% Similarity=0.293 Sum_probs=56.8
Q ss_pred ceEEEeccCCCCHHHHHHHHHhhcCCC------CceeEEeeCCCCCeeeecCchHHHHHHHhhcC--CCceEE
Q 005002 270 DIRWAQLPVNCSIRLVRDIVRDRFPSL------KGVLVKYKDQEGDLVTITTTDELRFVEMLFNS--QSFLRL 334 (720)
Q Consensus 270 DiR~~~~~~~~s~~~L~~~v~~kF~~~------~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~--~~~~rL 334 (720)
|++.+.+|.+++|.+|+++|++||... ..++|||||||||+|||.|++||.+|++.++. .|.+.+
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~~~~~~~lei 74 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNI 74 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHHhhhcCeEEE
Confidence 899999999999999999999999744 66999999999999999999999999997632 344444
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=9.9e-12 Score=113.33 Aligned_cols=152 Identities=11% Similarity=0.014 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|++++|+..|.+++...|.+. .++.++|.+|... |++++|+..+.++++++|.++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKT--GAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456788899999999999999999999999999887 5899999999997 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k 204 (720)
.+|.++...|++++|+..|++++.++|++..++..++.+...+++...+ ...+..... |..+.....++.++...
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998888754433 335555555 66666666666666655
Q ss_pred hhh
Q 005002 205 VKK 207 (720)
Q Consensus 205 ~kk 207 (720)
++.
T Consensus 158 ~~~ 160 (186)
T 3as5_A 158 GRH 160 (186)
T ss_dssp TCH
T ss_pred CCH
Confidence 543
No 51
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.36 E-value=1.6e-12 Score=118.12 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=100.6
Q ss_pred HHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005002 73 KALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSME 152 (720)
Q Consensus 73 kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld 152 (720)
++..++|+.. ..|.++|.+|++. |+|++|+..|++||+++|.++.+|+.+|.||..+|++++|+.+|++++.++
T Consensus 4 r~a~inP~~a----~~~~~~G~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 4 RLAYINPELA----QEEKNKGNEYFKK--GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp ---CCCHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 3344666555 6999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHH
Q 005002 153 PNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKL 200 (720)
Q Consensus 153 P~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i 200 (720)
|++..++..++.+...+++...+ .-.+...+. |..+.....++.+
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---P~~~~a~~~l~~~ 124 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD---PSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---cCCHHHHHHHHHh
Confidence 99999999999999999855444 347777788 7776655554443
No 52
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.35 E-value=1.2e-12 Score=115.79 Aligned_cols=103 Identities=11% Similarity=0.042 Sum_probs=89.3
Q ss_pred HcCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005002 60 QKRDHEGAMLKYEKALKLL---PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN 136 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~---P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG 136 (720)
..|+|++|+..|++|+.+. |.+. .++.++|.||+.+ |+|++|+..+.++++++|+++.+++.+|.||..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~----~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA----ECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence 4689999999999999994 5544 7999999999998 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
++++|+..|++++.++|+++.+......+...
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999877665555443
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.35 E-value=1.3e-11 Score=124.45 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|+.++..|+|++|+..|++++..+|.++ .++.++|.||+.+ |++++|+..+.++++++|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----IAYYRRATVFLAM--GKSKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 46788999999999999999999999999999988 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHH------------HHHHHhhhhc--cChhHHhhhcCCCCCCC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEP---NNSSALEVLE------------SVKQSMIEKG--IDIDEKMKEFGLDSSGE 190 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP---~n~~A~~~L~------------~lk~~l~eka--~a~~ek~~~L~~~~P~~ 190 (720)
+|.+|..+|++++|+..|++++.++| ++..++..+. .+....+... .....+..... |..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 153 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWD 153 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCc
Confidence 99999999999999999999999999 8888888774 3444443222 22234445555 666
Q ss_pred CcchhhHHHHHHHHh
Q 005002 191 AHGALRFRKLVKEKV 205 (720)
Q Consensus 191 P~~~~~l~~i~k~k~ 205 (720)
+.....++.++...+
T Consensus 154 ~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 154 AELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCC
Confidence 655555566655544
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.35 E-value=3.3e-11 Score=115.88 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|+|++|+..|.+++...|.+. .++.++|.+|..+ |++++|+..+.++++++|.+..+++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINFANLLSSV--NELERALAFYDKALELDSSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCcchHHHH
Confidence 356888999999999999999999999999999987 6999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k 204 (720)
.+|.++..+|++++|+..|++++.++|.+..++..++.+...+++...+ ...+...+. |..+.....++.++...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999888754433 335566666 66777777777777777
Q ss_pred hhhhhccch
Q 005002 205 VKKKKKNGK 213 (720)
Q Consensus 205 ~kkkK~~k~ 213 (720)
++..+..+-
T Consensus 173 ~~~~~A~~~ 181 (243)
T 2q7f_A 173 GMLDEALSQ 181 (243)
T ss_dssp TCCHHHHHH
T ss_pred CCHHHHHHH
Confidence 776654433
No 55
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=1.4e-11 Score=117.51 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|+.++..|+|++|+..|.+++ .| ++ .+++++|.+|..+ |+|++|+..|.++++++|+++.++
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~ 74 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----RICFNIGCMYTIL--KNMTEAEKAFTRSINRDKHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHH
Confidence 456688999999999999999999999995 34 33 6999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHhhhhccChh--HHhhhcC
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNS----------------SALEVLESVKQSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~----------------~A~~~L~~lk~~l~eka~a~~--ek~~~L~ 184 (720)
+.+|.+|..+|++++|+..|++++.+.|++. .++..++.+...+++...+.. .+...+.
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999877 899999999988875544433 4455554
No 56
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.34 E-value=2.1e-12 Score=125.02 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=94.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEF----------PRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdy----------eeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
+.+.|++|+..|++|+.++|+++ .+|+|+|.|++.+ +++ ++||..|++||+++|++..+|+++|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l--~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLEL--SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHh--cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34579999999999999999999 5999999999997 664 6999999999999999999999999
Q ss_pred HHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 130 QCYKALN-----------RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 130 ~Ay~~LG-----------ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.+|..+| +|++|+.+|++|+.++|++..++..+..+.+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 9999885 899999999999999999999988888776644
No 57
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=1.6e-11 Score=114.81 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH-HHHcCCCCH--HHHHHHHHHHHHhCCCCHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGC-YMQMGLGEF--PRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~-y~kL~~gdy--eeAI~d~~kALeLdP~~~KA 124 (720)
+..+...|..++..|+|++|+..|.+++.++|.++ .++.++|.+ |+.. |++ ++|+..+.++++++|+++.+
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~~--~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA----ELYAALATVLYYQA--SQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH----HHHHHHHHHHHHHT--TTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhCCCcHHH
Confidence 45788899999999999999999999999999987 599999999 7786 898 99999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
++.+|.+|..+|++++|+..|++++.++|++......+..+..
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999998766655555444
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.34 E-value=3.3e-11 Score=121.48 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
.......|..++..|++++|+..|++++...|.++.....++.++|.+|..+ |++++|+..++++++++|+++.+++.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD--EKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3345567999999999999999999999999998754556788999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+|.+|..+|++++|+..|++++.++|++..++..+..++..++.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887753
No 59
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.2e-11 Score=119.48 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-----
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY----- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~----- 121 (720)
.+..+...|+.++..|+|++|+..|++++.+. .++ .++.++|.||+.+ |+|++|+..+.++++++|++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEK--GEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCcccccchH
Confidence 45677777777777777777777777777777 554 4777777777776 77777777777777777665
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHhhhhc
Q 005002 122 --SKALLKRAQCYKALNRLDFAFRDVNNVLS--------------------------MEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 122 --~KAy~rrA~Ay~~LGryeeAl~d~ekAL~--------------------------LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+.+++.+|.+|..+|++++|+..|++++. ++|.+..++..++.+....++..
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 67777777777777777777777777777 44445555555555555554332
Q ss_pred cC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHhh
Q 005002 174 ID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKVK 206 (720)
Q Consensus 174 ~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~k 206 (720)
.+ .-.+...+. |..+.....++.++...++
T Consensus 157 ~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 157 NAVKAYTEMIKRA---PEDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCC
Confidence 22 224444444 5555555555555544443
No 60
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.1e-11 Score=118.77 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
+.|..++..|+|++|+..|+++++++|++. .+++++|.+|+.+ |++++|+..|+++|+++|+++.+++.+|.+|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNV----DCLEACAEMQVCR--GQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 399999999999999999999999999998 5999999999998 9999999999999999999999998888887
Q ss_pred HHcC
Q 005002 133 KALN 136 (720)
Q Consensus 133 ~~LG 136 (720)
+..|
T Consensus 133 ~~~~ 136 (208)
T 3urz_A 133 YLTA 136 (208)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 61
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=7.5e-12 Score=105.58 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK--YSKALLK 127 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~--~~KAy~r 127 (720)
.+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|..+ |+|++|+..++++++++|. +..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES----KYWLMKGKALYNL--ERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 456789999999999999999999999999987 5999999999998 9999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCCH
Q 005002 128 RAQCYKAL-NRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 128 rA~Ay~~L-GryeeAl~d~ekAL~LdP~n~ 156 (720)
+|.++..+ |++++|+..+++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999763
No 62
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=99.33 E-value=3.7e-12 Score=110.79 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=72.4
Q ss_pred cccceeeeeecCceEEEec--cCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcC-CCceEE
Q 005002 258 VVTKTVKLVFGDDIRWAQL--PVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNS-QSFLRL 334 (720)
Q Consensus 258 ~~~~~~K~~~g~DiR~~~~--~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~-~~~~rL 334 (720)
.++.++||+|.+|+++|.| +.++|+.+|..+|...|. +..|+|||.|+|||.|+|+|+.|+..|+.++.. .+.+++
T Consensus 4 ~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~-L~~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k~~n~L~m 82 (87)
T 2bkf_A 4 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQM 82 (87)
T ss_dssp CCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-CSSEEEEEECTTSCEEEECSHHHHHHHHHHHHHTTTEEEE
T ss_pred CceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC-CCceEEEEEcCCCCEEEEecHHHHHHHHHHhccCCCEEEE
Confidence 4678899999999999887 779999999999999994 789999999999999999999999999999866 666888
Q ss_pred EEEe
Q 005002 335 YIAE 338 (720)
Q Consensus 335 ~v~e 338 (720)
+|.+
T Consensus 83 ~v~~ 86 (87)
T 2bkf_A 83 QVHE 86 (87)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8754
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=4.3e-11 Score=113.06 Aligned_cols=154 Identities=14% Similarity=-0.010 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.++++++|.+..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYL--KVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCChHHHH
Confidence 355788899999999999999999999999999987 5999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHH
Q 005002 127 KRAQCYKAL-NRLDFAFRDVNNVLS--MEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 127 rrA~Ay~~L-GryeeAl~d~ekAL~--LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
.+|.+|..+ |++++|+..|++++. .+|.+..++..++.+....++...+ ...+..... |..+.....++.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHH
Confidence 999999999 999999999999999 6777789999999998888754433 335555666 66666666777777
Q ss_pred HHHhhhhh
Q 005002 202 KEKVKKKK 209 (720)
Q Consensus 202 k~k~kkkK 209 (720)
...++..+
T Consensus 158 ~~~~~~~~ 165 (225)
T 2vq2_A 158 MLAGQLGD 165 (225)
T ss_dssp HHHTCHHH
T ss_pred HHcCCHHH
Confidence 66665544
No 64
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.2e-11 Score=117.47 Aligned_cols=113 Identities=22% Similarity=0.365 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
.+..+...|..++..|+|++|+..|++++.+.|.++ .++.++|.+|..+ |++++|+..++++++++|+++.+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~ 211 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYI 211 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 345667788888888888888888888888888876 5888888888887 8888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSME------PNNSSALEVLESV 165 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~Ld------P~n~~A~~~L~~l 165 (720)
.+|.+|..+|++++|+..|++++.++ |++..++..+.++
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 88888888888888888888888888 8877777776654
No 65
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=2.8e-12 Score=142.41 Aligned_cols=116 Identities=27% Similarity=0.435 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+.+..+...|+.++..|+|++|+..|++|++++|.+. .+|+++|.||.++ |+|++|+..+++|++++|+++.++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~ 77 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGY 77 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4566788899999999999999999999999999988 6999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+++|.+|..+|++++|+..|+++++++|++..++..+..+..
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998843
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=1.9e-11 Score=121.67 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KA 124 (720)
+..+...|..++..|+|++|+..|++++...|.++ ....+++++|.||+++ |+|++|+..|++++++.|++ +.+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQN--KEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34788999999999999999999999999999883 2236999999999998 99999999999999998854 679
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHhhhhccCh--h
Q 005002 125 LLKRAQCYKA--------LNRLDFAFRDVNNVLSMEPNNSSAL-----------------EVLESVKQSMIEKGIDI--D 177 (720)
Q Consensus 125 y~rrA~Ay~~--------LGryeeAl~d~ekAL~LdP~n~~A~-----------------~~L~~lk~~l~eka~a~--~ 177 (720)
++.+|.|+.. +|++++|+..|++++.++|++..+. ..++.+....++...+. .
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999 9999999999999999999987666 55566766666443333 3
Q ss_pred HHhhhcCCCCCCCC---cchhhHHHHHHHHhh
Q 005002 178 EKMKEFGLDSSGEA---HGALRFRKLVKEKVK 206 (720)
Q Consensus 178 ek~~~L~~~~P~~P---~~~~~l~~i~k~k~k 206 (720)
.+..... |..+ .....++.++...+.
T Consensus 172 ~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 172 EAVFDAY---PDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp HHHHHHC---TTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC---CCCchHHHHHHHHHHHHHHhcc
Confidence 5555555 5433 344455666665543
No 67
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=2.4e-11 Score=126.89 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+...|..+...|+|++|+..|.+++.+.|++. .++.++|.+|... |++++|+..++++++++|+++.+++.
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 276 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----VVHGNLACVYYEQ--GLIDLAIDTYRRAIELQPHFPDAYCN 276 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 45677778888888888888888888888888776 4777888888876 78888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHHHHHh
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLVKEKV 205 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~k~k~ 205 (720)
+|.+|..+|++++|+..|++++.++|++..++..+..+....++...+. .++...+. |..+.....++.++...+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcC
Confidence 8888888888888888888888888888888877777777666433322 24444444 555556666666666655
Q ss_pred hhhhc
Q 005002 206 KKKKK 210 (720)
Q Consensus 206 kkkK~ 210 (720)
+..+.
T Consensus 354 ~~~~A 358 (388)
T 1w3b_A 354 KLQEA 358 (388)
T ss_dssp CCHHH
T ss_pred CHHHH
Confidence 55443
No 68
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=5.4e-11 Score=102.25 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|++++|+..|.+++...|.+. .++.++|.++... |++++|+..+.+++..+|.++.+++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHh--cCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 3567789999999999999999999999999887 5899999999998 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
|.++...|++++|+..+++++.+.|.+..++..+..+....++.
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence 99999999999999999999999999999999888888766543
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=6.3e-11 Score=107.98 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|... |++++|+..+.+++.++|.++.+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 115 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV----KVATVLGLTYVQV--QKYDLAVPLLIKVAEANPINFNVRFR 115 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence 34678899999999999999999999999999987 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+|.++..+|++++|+..|++++.++|.+..++..++.+...+++..
T Consensus 116 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999998887543
No 70
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.31 E-value=3.3e-11 Score=124.41 Aligned_cols=97 Identities=21% Similarity=0.121 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|+|++|+..|++++.++|.+. .+|+++|.+|..+ |+|++|+..++++++++|+++.+++.+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA----EAWQFLGITQAEN--ENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 344555555666666666666666666665554 3555555555554 5555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 005002 130 QCYKALNRLDFAFRDVNNVLSME 152 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~Ld 152 (720)
.+|..+|++++|+..|++++.++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN 163 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccccHHHHHHHHHHHHHhC
Confidence 55555555555555555544443
No 71
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.30 E-value=2.9e-11 Score=124.85 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-------
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK------- 120 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~------- 120 (720)
+..+...|..++..|+|++|+..|++++.+.|.+. .++.++|.+|..+ |++++|+..+.++++++|+
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNL----KALMALAVSYTNT--SHQQDACEALKNWIKQNPKYKYLVKN 172 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCHHHHCC---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHcc--ccHHHHHHHHHHHHHhCccchHHHhh
Confidence 45678899999999999999999999999999988 6999999999998 9999999999999998876
Q ss_pred ---------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 005002 121 ---------------------------------------YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEV 161 (720)
Q Consensus 121 ---------------------------------------~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~ 161 (720)
++.+++.+|.+|..+|++++|+..|++++.++|++..++..
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 252 (365)
T 4eqf_A 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252 (365)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45566666666666666666666666666666666666666
Q ss_pred HHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHhhhhh
Q 005002 162 LESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 162 L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kkkK 209 (720)
++.+...+++...+ ...+...+. |..+.....++.++...++..+
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHCCCHHH
Confidence 66666665533322 224444455 5555555555555555544433
No 72
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=3.1e-11 Score=125.99 Aligned_cols=151 Identities=20% Similarity=0.144 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..+...|++++|+..|.+++.+.|++. .+|.++|.+|... |++++|+..++++++++|+++.+++.+|
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFA----VAWSNLGCVFNAQ--GEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 445556666666666666666666666666655 3666666666664 6666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHhhh
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKVKK 207 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kk 207 (720)
.++...|++++|+..|++++.++|++..++..++.+....++...+ ...+...+. |..+.....++.++...++.
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666666666666666666665555533222 223444444 55555555555555555444
Q ss_pred hh
Q 005002 208 KK 209 (720)
Q Consensus 208 kK 209 (720)
..
T Consensus 288 ~~ 289 (388)
T 1w3b_A 288 AE 289 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=9.9e-12 Score=137.08 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 48 SQELKEEGNKLFQKRDH-EGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 48 A~~lKeeGn~lfk~Gdy-eeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
+..+...|..++..|+| ++|+..|++|+.++|++. .+|+++|.||+.+ |+|++|+..|.+||+++|+ ..+++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~~ 174 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV----EAWNQLGEVYWKK--GDVTSAHTCFSGALTHCKN-KVSLQ 174 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHTTCCC-HHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC-HHHHH
Confidence 56778899999999999 999999999999999988 5999999999998 9999999999999999999 79999
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------hhhc--cChhHHhhhcCCCC
Q 005002 127 KRAQCYKAL---------NRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM--------IEKG--IDIDEKMKEFGLDS 187 (720)
Q Consensus 127 rrA~Ay~~L---------GryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l--------~eka--~a~~ek~~~L~~~~ 187 (720)
.+|.+|..+ |++++|+..|++++.++|++..++..++.++..+ ++.. .....+...+.
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--- 251 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--- 251 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC---
Confidence 999999999 9999999999999999999999999999999887 5333 33346666777
Q ss_pred C---CCCcchhhHHHHHHHHhhhhhc
Q 005002 188 S---GEAHGALRFRKLVKEKVKKKKK 210 (720)
Q Consensus 188 P---~~P~~~~~l~~i~k~k~kkkK~ 210 (720)
| ..+.....++.++...++..+.
T Consensus 252 p~~~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 6 6777777788887776665543
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.29 E-value=1.4e-12 Score=123.73 Aligned_cols=110 Identities=7% Similarity=-0.092 Sum_probs=100.0
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 69 LKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 69 ~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
..|.+++.++|++. .+++++|.+++++ |+|++|+..|++++.++|+++.+|+.+|.||..+|+|++|+..|+++
T Consensus 23 ~~l~~al~l~p~~~----~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 23 ATLKDINAIPDDMM----DDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp CCTGGGCCSCHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHhCCCHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 55788899999888 5999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 149 LSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 149 L~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
+.++|+++.++..++.++..+++...+. .++...+.
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998655443 36666666
No 75
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.28 E-value=9e-11 Score=114.95 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.++++++|.++.++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~ 114 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCccccHHH
Confidence 3466788899999999999999999999999999887 5899999999997 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
+.+|.+|..+|++++|+..|++++.++|++......+..
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999999999999999999998865554443
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=8.2e-11 Score=116.99 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHhCC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQ--------MGLGEFPRAINECNLALEVSS 119 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~k--------L~~gdyeeAI~d~~kALeLdP 119 (720)
...+...|..++..|+|++|+..|++++.+.|+++ ....+++++|.||+. + |++++|+..++++++..|
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQ--TDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCC--HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccc--hhHHHHHHHHHHHHHHCc
Confidence 56788999999999999999999999999999875 344789999999999 7 999999999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhh
Q 005002 120 KYSKAL-----------------LKRAQCYKALNRLDFAFRDVNNVLSMEPN---NSSALEVLESVKQSMI 170 (720)
Q Consensus 120 ~~~KAy-----------------~rrA~Ay~~LGryeeAl~d~ekAL~LdP~---n~~A~~~L~~lk~~l~ 170 (720)
+++.+. +.+|.+|..+|+|++|+..|++++...|+ ...++..++.+...++
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 986655 89999999999999999999999999998 4678888988888774
No 77
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.28 E-value=6.4e-12 Score=111.73 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=73.9
Q ss_pred ccccceeeeeecCceEEEec--cCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcC-CCceE
Q 005002 257 KVVTKTVKLVFGDDIRWAQL--PVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNS-QSFLR 333 (720)
Q Consensus 257 ~~~~~~~K~~~g~DiR~~~~--~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~-~~~~r 333 (720)
-.+..++||+|.+|+++|.| +.++|+.+|..+|...|. +..|+|||.|+|||.|+|+|+.|+..|+.++.. .+.|+
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-L~~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k~~n~L~ 89 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQ 89 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-CSSBCCEEECTTSCEECCCSHHHHHHHHHHHHHHTSEEE
T ss_pred cCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-CCceEEEEecCCCCEEEEecHHHHHHHHHHhccCCCEEE
Confidence 35788999999999999887 789999999999999994 789999999999999999999999999999866 67788
Q ss_pred EEEEe
Q 005002 334 LYIAE 338 (720)
Q Consensus 334 L~v~e 338 (720)
++|.+
T Consensus 90 m~V~~ 94 (101)
T 1wj6_A 90 MQVHE 94 (101)
T ss_dssp EECCB
T ss_pred EEEee
Confidence 88866
No 78
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.28 E-value=2.1e-11 Score=119.82 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY----SKA 124 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~----~KA 124 (720)
..+...|..++..|+|++|+..|++++.++|.+. .++.++|.||+.+ |+|++|+..+.++++ .|.+ ..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~-~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYEL--AKYDLAQKDIETYFS-KVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHT--TCHHHHHHHHHHHHT-TSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHH--hhHHHHHHHHHHHHh-ccCchhHHHHH
Confidence 3567899999999999999999999999999988 4999999999998 999999999999999 4433 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCCCcchhhHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGEAHGALRFR 198 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~P~~~~~l~ 198 (720)
|+.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++...+.. .+...+. |..+.....++
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~ 149 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999998885544433 4444444 55555444444
No 79
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.28 E-value=5.1e-11 Score=132.88 Aligned_cols=131 Identities=8% Similarity=-0.003 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|+|++|+..|++|++++|++. .++.++|.+|..+ |++++|+..++++++++|+++.+++.
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQ--QRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45788999999999999999999999999999988 5999999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---hhhccCh--hHHhhhcC
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM---IEKGIDI--DEKMKEFG 184 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l---~eka~a~--~ek~~~L~ 184 (720)
+|.+|..+|++++|+..|++++.++|++..++..+..+...+ ++...+. ..+.....
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988 6443332 34555555
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.28 E-value=7.8e-12 Score=116.48 Aligned_cols=117 Identities=11% Similarity=-0.068 Sum_probs=103.4
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 68 MLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 68 l~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
-..|.+++.++|.+. .+++++|.+++.. |+|++|+..+.+++.++|+++.+++.+|.||..+|+|++|+..|++
T Consensus 7 ~~~~~~al~~~p~~~----~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 7 GGTIAMLNEISSDTL----EQLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp CCSHHHHTTCCHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhH----HHHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 346889999998877 5999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcc
Q 005002 148 VLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHG 193 (720)
Q Consensus 148 AL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~ 193 (720)
++.++|+++.++..++.+...+++...+. -.+...+. |..|..
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 125 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI---ANXPEF 125 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCGGG
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCCcc
Confidence 99999999999999999999998654443 36666666 655544
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=4.7e-11 Score=113.87 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS----- 122 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~----- 122 (720)
+..+...|..++..|+|++|+..|.+++.++|.+. .+|+++|.+|+.+ |+|++|+..+++++++.|.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA----VAYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 34788999999999999999999999999999988 5999999999998 999999999999999888776
Q ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 123 -----------KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 123 -----------KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
.+++.+|.+|..+|++++|+..|++++.++|++..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998643
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.27 E-value=1e-10 Score=113.90 Aligned_cols=151 Identities=14% Similarity=0.036 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hCCCCHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE--VSSKYSKAL 125 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe--LdP~~~KAy 125 (720)
+..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.+++. .+|.++.++
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 144 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----RVLNNYGGFLYEQ--KRYEEAYQRLLEASQDTLYPERSRVF 144 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHH--hHHHHHHHHHHHHHhCccCcccHHHH
Confidence 34567789999999999999999999999999887 5999999999997 999999999999999 889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
+.+|.+|..+|++++|+..|++++.++|.+..++..+..+...+++...+. ..+..... |..+.....++.++..
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG---GQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887544333 34444455 5555545555555554
Q ss_pred Hhhh
Q 005002 204 KVKK 207 (720)
Q Consensus 204 k~kk 207 (720)
.++.
T Consensus 222 ~g~~ 225 (252)
T 2ho1_A 222 FEDR 225 (252)
T ss_dssp TTCH
T ss_pred ccCH
Confidence 4433
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=6.8e-12 Score=144.90 Aligned_cols=143 Identities=13% Similarity=-0.027 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|+|++|+..|+++++++|++. .+|+++|.+|+.+ |+|++|+..|++||+++|+++.+++.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW----RLVWYRAVAELLT--GDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4678889999999999999999999999999998 5999999999998 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHH
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
|.+|..+|+|++ +..|++++.++|++..++..++.++..+++...+. .++...+. |..+.....++.++
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS---RHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS---TTHHHHHHHHHHHT
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC---cccHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999988654443 35555555 65555555555554
No 84
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.26 E-value=3.8e-11 Score=117.98 Aligned_cols=151 Identities=9% Similarity=-0.025 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|+|++|+..|.+++. .|.++...+.+|.++|.+|..+ |++++|+..+.++++++|.++.+++.+|
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 115 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK--GQDSLAIQQYQAAVDRDTTRLDMYGQIG 115 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 567789999999999999999999999 6655543356799999999998 9999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHhh-hhccChhHHhhhcCCCCCCCCcchhhHHHHHHHHhh
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE-SVKQSMI-EKGIDIDEKMKEFGLDSSGEAHGALRFRKLVKEKVK 206 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~-~lk~~l~-eka~a~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~k 206 (720)
.+|..+|++++|+..|++++.++|++..++..++ .+..... +.+.....+...+. |..+.....++.+....++
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK---PNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999998 5555431 22223335556666 6666555556666655543
No 85
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=4e-12 Score=108.51 Aligned_cols=95 Identities=25% Similarity=0.357 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-----
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY----- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~----- 121 (720)
.+..+...|..++..|+|++|+..|++|+.++|.++ .+++++|.||+.+ |+|++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP----VGYSNKAMALIKL--GEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCccHHHH
Confidence 356788889999999999999999999999988887 5888999999887 89999999999999999988
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005002 122 -SKALLKRAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 122 -~KAy~rrA~Ay~~LGryeeAl~d~ek 147 (720)
..+++++|.++..+|+++.|+..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88888999999888888877766543
No 86
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.26 E-value=7e-11 Score=121.01 Aligned_cols=142 Identities=11% Similarity=0.012 Sum_probs=94.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005002 60 QKRDHEGAMLKYEKALKLLPK--NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNR 137 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~--~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGr 137 (720)
..|++++|+..|.+++.+.|. +. .++.++|.+|..+ |++++|+..+++++.++|+++.+++.+|.++..+|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLS--GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCcccH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC
Confidence 667777777777777777777 34 4677777777776 777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCC-----------CcchhhHHHHHHHH
Q 005002 138 LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGE-----------AHGALRFRKLVKEK 204 (720)
Q Consensus 138 yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~-----------P~~~~~l~~i~k~k 204 (720)
+++|+..|++++.++|++..++..++.+...+++...+. ..+...+. |.. +.....++.++...
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ---RKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HTC------CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCCCccccccchhhHHHHHHHHHHHHh
Confidence 777777777777777777777777777777666443332 23333333 222 34455566666666
Q ss_pred hhhhhc
Q 005002 205 VKKKKK 210 (720)
Q Consensus 205 ~kkkK~ 210 (720)
++....
T Consensus 344 g~~~~A 349 (368)
T 1fch_A 344 GQSDAY 349 (368)
T ss_dssp TCGGGH
T ss_pred CChHhH
Confidence 655443
No 87
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=3e-11 Score=133.26 Aligned_cols=152 Identities=12% Similarity=0.092 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHhC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL---------GEFPRAINECNLALEVS 118 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~---------gdyeeAI~d~~kALeLd 118 (720)
+..+...|..++..|+|++|+..|++|+.++|+ + .++.++|.+|.. . |+|++|+..|++|++++
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~----~~~~~lg~~~~~--~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K----VSLQNLSMVLRQ--LQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H----HHHHHHHHHHTT--CCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H----HHHHHHHHHHHH--hccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999998 4 599999999987 5 79999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCC
Q 005002 119 SKYSKALLKRAQCYKAL--------NRLDFAFRDVNNVLSMEP---NNSSALEVLESVKQSMIEKGIDI--DEKMKEFGL 185 (720)
Q Consensus 119 P~~~KAy~rrA~Ay~~L--------GryeeAl~d~ekAL~LdP---~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~ 185 (720)
|+++.+++.+|.+|..+ |++++|+..|++++.++| ++..++..++.++..+++...+. ..+...+.
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 288 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD- 288 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99999999999999999 999999999999999999 99999999999999998555443 46677777
Q ss_pred CCCCCCcchhhHHHHHHHHhhhhh
Q 005002 186 DSSGEAHGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 186 ~~P~~P~~~~~l~~i~k~k~kkkK 209 (720)
|..+.....++.++...++...
T Consensus 289 --p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 289 --PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777776665433
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=7.6e-11 Score=115.82 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK---A 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K---A 124 (720)
+..+...|..++..|+|++|+..|++++...|.++. ...+++++|.||+++ |+|++|+..++++++++|+++. +
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~--~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 357888999999999999999999999999998752 235899999999998 9999999999999999999865 8
Q ss_pred HHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHHHH
Q 005002 125 LLKRAQCYKA------------------LNRLDFAFRDVNNVLSMEPNNSSALE 160 (720)
Q Consensus 125 y~rrA~Ay~~------------------LGryeeAl~d~ekAL~LdP~n~~A~~ 160 (720)
++.+|.++.. +|++++|+..|++++..+|++..+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999999987 57999999999999999999976554
No 89
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=3.2e-11 Score=112.74 Aligned_cols=130 Identities=13% Similarity=0.178 Sum_probs=110.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH
Q 005002 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC-YK 133 (720)
Q Consensus 55 Gn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A-y~ 133 (720)
++.++..|+|++|+..|.+++..+|.+. .+|.++|.+|+.+ |+|++|+..+.++++++|+++.+++.+|.+ +.
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNS----EQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYY 90 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4446778999999999999999999988 5999999999998 999999999999999999999999999999 88
Q ss_pred HcCCH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcc
Q 005002 134 ALNRL--DFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHG 193 (720)
Q Consensus 134 ~LGry--eeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~ 193 (720)
..|++ ++|+..|++++.++|++..++..++.+...+++...+. ..+...+. |..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 151 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN---SPRINR 151 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTSCH
T ss_pred hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---CCCccH
Confidence 99999 99999999999999999999999999999888554443 35566666 655543
No 90
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.24 E-value=1.5e-10 Score=122.21 Aligned_cols=124 Identities=21% Similarity=0.259 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+...|..++..|++++|+..|++++.+.|.++.....++.++|.+|.++ |++++|+..|+++++++|+++.+++.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD--EKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3445667999999999999999999999999998754456899999999998 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka 173 (720)
+|.+|..+|++++|+..|++++.++|++..++..+..+...++...
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999988776543
No 91
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.4e-10 Score=116.01 Aligned_cols=158 Identities=13% Similarity=-0.032 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 48 SQELKEEGNKLFQKR-DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 48 A~~lKeeGn~lfk~G-dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
+..+...|..++..| ++++|+..|.+++.++|.+. .+|.++|.+|..+ |++++|+..+.+++++.|++..+++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG----PAWIAYGHSFAVE--SEHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhccccHHHHH
Confidence 456778888888888 88889999999998888887 4888888888887 8888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCC------CCCCCcchhhHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLD------SSGEAHGALRFR 198 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~------~P~~P~~~~~l~ 198 (720)
.+|.+|..+|++++|+..|++++.++|++..++..++.+....++...+.. .+...+... .|..+.....++
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887764433322 333222100 133344555666
Q ss_pred HHHHHHhhhhhcc
Q 005002 199 KLVKEKVKKKKKN 211 (720)
Q Consensus 199 ~i~k~k~kkkK~~ 211 (720)
.++...++..+..
T Consensus 244 ~~~~~~g~~~~A~ 256 (330)
T 3hym_B 244 HVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhcCHHHHH
Confidence 7776666655543
No 92
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.23 E-value=2.8e-10 Score=116.53 Aligned_cols=96 Identities=21% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|+|++|+..|++++.+.|.+. .++.++|.||..+ |++++|+..+.++++++|+++.+++.+|
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQAEN--EQELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 344555666666666666666666666655555 3555555555554 5566666666666555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 005002 130 QCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~L 151 (720)
.+|..+|++++|+..|++++.+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555544444433
No 93
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.21 E-value=3e-10 Score=107.27 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH--hCCCCHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL-GEFPRAINECNLALE--VSSKYSKA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~-gdyeeAI~d~~kALe--LdP~~~KA 124 (720)
+..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|.. . |++++|+..++++++ .+|.+..+
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~ 115 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----EINNNYGWFLCG--RLNRPAESMAYFDKALADPTYPTPYIA 115 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHT--TTCCHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHH--hcCcHHHHHHHHHHHHcCcCCcchHHH
Confidence 34677889999999999999999999999999987 589999999987 5 899999999999999 66777899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
++.+|.++..+|++++|+..|++++.++|++..++..+..+...+++...+. ..+...+.
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998887544333 34455555
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=1e-10 Score=135.08 Aligned_cols=142 Identities=11% Similarity=0.014 Sum_probs=128.4
Q ss_pred HHcCCHHHHHHHHHHHH--------HhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005002 59 FQKRDHEGAMLKYEKAL--------KLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQ 130 (720)
Q Consensus 59 fk~GdyeeAl~~Y~kAL--------~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~ 130 (720)
+..|+|++|+..|++++ ..+|++. .+++++|.+|+.+ |+|++|+..|+++++++|++..+|+.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV----ELPLMEVRALLDL--GDVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch----hHHHHHHHHHHhc--CCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 88999999999999999 9999988 5999999999998 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc-ChhHHhhhcCCCCCCCCcchhhHHHHHHHHhhhhh
Q 005002 131 CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI-DIDEKMKEFGLDSSGEAHGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 131 Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~-a~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kkkK 209 (720)
+|..+|+|++|+.+|++++.++|++..++..++.+...+++... ...++...+. |..+.....++.++...++...
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTN---DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999985444 3347778888 8888888888888887766544
No 95
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.20 E-value=3.5e-11 Score=109.81 Aligned_cols=116 Identities=9% Similarity=-0.052 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 69 LKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 69 ~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
..|.+++.++|++. ..++++|.+++.. |+|++|+..|.+++.++|+++.+++.+|.||..+|+|++|+..|+++
T Consensus 5 ~~l~~al~~~p~~~----~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL----EQLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp ----CCTTCCHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHH----HHHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46778888888776 5899999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcc
Q 005002 149 LSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHG 193 (720)
Q Consensus 149 L~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~ 193 (720)
+.++|+++.++..++.+...+++...+ ..++...+. |..|..
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 122 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA---AAQPAH 122 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HTCGGG
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcch
Confidence 999999999999999999999865443 335566666 555543
No 96
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.19 E-value=1.9e-10 Score=100.54 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005002 65 EGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRD 144 (720)
Q Consensus 65 eeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d 144 (720)
..|+..|.+++.++|+++ .+++++|.+|+.+ |+|++|+..|.++++++|+++.+++.+|.+|..+|++++|+..
T Consensus 2 ~~a~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNM----LLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 368899999999999988 6999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHhh
Q 005002 145 VNNVLSMEPN--NSSALEVLESVKQSMI 170 (720)
Q Consensus 145 ~ekAL~LdP~--n~~A~~~L~~lk~~l~ 170 (720)
|++++.++|. +..+...+..+...++
T Consensus 76 ~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 76 WESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999884 5566666666655554
No 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.8e-10 Score=121.47 Aligned_cols=105 Identities=28% Similarity=0.475 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+.+..++..|+.+++.|+|++|+..|++++.++|+ + .+|.++|.||+.+ |+|++|+..|+++++++|+++.++
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~----~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 76 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P----VFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H----HHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHH
Confidence 67889999999999999999999999999999994 4 5999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
+.+|.+|..+|++++|+..|++++.++|.+..
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999997643
No 98
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.16 E-value=4e-10 Score=121.44 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
...+..+...|..++..|++++|+..|.+++.+.|. . .++.++|.+|+.+ |++++|+..+.++++++|+++.+
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~ 312 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----NSYIFLALTLADK--ENSQEFFKFFQKAVDLNPEYPPT 312 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----HHHHHHHHHTCCS--SCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----hHHHHHHHHHHHh--cCHHHHHHHHHHHhccCCCCHHH
Confidence 355778999999999999999999999999999998 5 5899999999997 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
++.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++...+ ...+...+. |..+.....++.++.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988855433 335566666 777777777777766
Q ss_pred HHhh
Q 005002 203 EKVK 206 (720)
Q Consensus 203 ~k~k 206 (720)
..++
T Consensus 390 ~~g~ 393 (537)
T 3fp2_A 390 DRGD 393 (537)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 5443
No 99
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.16 E-value=5.1e-10 Score=111.80 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.++++++|+++.+++.+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l 246 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA----QLWNKLGATLANG--NRPQEALDAYNRALDINPGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455566666666666666666666666666655 3666666666665 666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhh
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPN------------NSSALEVLESVKQSMI 170 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~------------n~~A~~~L~~lk~~l~ 170 (720)
|.+|..+|++++|+..|++++.++|+ +..++..+..+...++
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666 5666666666665554
No 100
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.16 E-value=5.7e-10 Score=115.27 Aligned_cols=137 Identities=13% Similarity=0.023 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+.+.|++++|+..|++++.++|++.. .....+.+.+..+.|++++|+..++++++.+|+++.+++.+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~----~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL----TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH----HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 45677899999999999999999999999988641 22222322232234899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc---ChhHHhhhcCCCCCCCCc
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI---DIDEKMKEFGLDSSGEAH 192 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~---a~~ek~~~L~~~~P~~P~ 192 (720)
|.++..+|++++|+..|++++.++|+++.++.++..+...+++... ...++...+. |..|.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~---P~~~~ 270 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH---RSHPF 270 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CCChH
Confidence 9999999999999999999999999999999999999888875432 2335666677 66553
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=1.7e-10 Score=118.44 Aligned_cols=150 Identities=8% Similarity=-0.005 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+...|..++..|++++|+..|++++.++|++. .+++++|.+|+.+ |++++|+..+++++..+|++...++.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~--g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIAL--NRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHT--TCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHC--CCHHHHHHHHHhCchhhcchHHHHHH
Confidence 45688999999999999999999999999999998 5999999999997 99999998888887777766666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCC--CcchhhHHHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGE--AHGALRFRKLVKE 203 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~--P~~~~~l~~i~k~ 203 (720)
.+..+...+++++|+..|++++.++|++..++..++.++...++...+.. ....... |.. +.....++.++..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~---p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD---LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---cccccchHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777776664433332 4444444 444 3444455555555
Q ss_pred Hhh
Q 005002 204 KVK 206 (720)
Q Consensus 204 k~k 206 (720)
.|+
T Consensus 268 ~g~ 270 (287)
T 3qou_A 268 LGT 270 (287)
T ss_dssp HCT
T ss_pred cCC
Confidence 443
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=7.6e-10 Score=94.98 Aligned_cols=101 Identities=24% Similarity=0.388 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|++++|+..|.+++...|.+. .++.++|.++... |++++|+..+.+++...|.+..+++.+
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3567789999999999999999999999999887 5899999999997 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n 155 (720)
|.++..+|++++|+..|++++.++|++
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999874
No 103
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.14 E-value=2.1e-10 Score=123.73 Aligned_cols=107 Identities=31% Similarity=0.507 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|+.++..|+|++|+..|++++.++|+++ .+|+++|.||+.+ |+|++|+..|+++++++|+++.++
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 96 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHH
Confidence 7899999999999999999999999999999999998 6999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSAL 159 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~ 159 (720)
+.+|.+|..+|++++|+..|+ ++.++|+.....
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~ 129 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS 129 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HHC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH
Confidence 999999999999999999996 999999876543
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.14 E-value=3.1e-10 Score=111.05 Aligned_cols=124 Identities=14% Similarity=0.036 Sum_probs=109.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005002 59 FQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRL 138 (720)
Q Consensus 59 fk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGry 138 (720)
...|+|++|+..|.+++...|.+.+..+.+++++|.+|..+ |++++|+..+.++++++|+++.+++.+|.+|..+|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 34588999999999999987665555678999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 139 DFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 139 eeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
++|+..|++++.++|++..++..++.+...+++...+. ..+...+.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999887544333 34555555
No 105
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.13 E-value=2.9e-10 Score=113.59 Aligned_cols=108 Identities=16% Similarity=0.058 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..++..|+|++|+..|++++...|.+. .++.++|.+|..+ |++++|+..+.++++++|+++.+++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l 95 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----EAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAAL 95 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 3577899999999999999999999999999988 5899999999998 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVL 162 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L 162 (720)
|.+|..+|++++|+..|++++.++|.+..+...+
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 129 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN 129 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 9999999999999999999999999987766555
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=8.5e-10 Score=108.29 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc----------------CCCCHHHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM----------------GLGEFPRAINECN 112 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL----------------~~gdyeeAI~d~~ 112 (720)
..+...|..+++.|+|++|+..|++++.+.|++.. ...+++++|.||..+ ..|++++|+..++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999872 335789999999863 1378999999999
Q ss_pred HHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhhhh
Q 005002 113 LALEVSSKYSKAL-----------------LKRAQCYKALNRLDFAFRDVNNVLSMEPNNS---SALEVLESVKQSMIEK 172 (720)
Q Consensus 113 kALeLdP~~~KAy-----------------~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~---~A~~~L~~lk~~l~ek 172 (720)
++|+..|+++.+. +.+|.+|+..|+|++|+..|++++...|+++ .++..++.+...+++.
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 9999999987554 6789999999999999999999999999986 6788888888888755
Q ss_pred ccC
Q 005002 173 GID 175 (720)
Q Consensus 173 a~a 175 (720)
..+
T Consensus 201 ~~A 203 (225)
T 2yhc_A 201 AQA 203 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 107
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=3.4e-10 Score=115.90 Aligned_cols=105 Identities=9% Similarity=-0.010 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CC-
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLP--KNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS--KY- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P--~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP--~~- 121 (720)
.+..+...|+.+...|+|++|+..|.+|+.+.+ .++...+.+|.|+|.+|..+ |+|++|+.++++||++.| .+
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG--GNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 334444444555555555555555555544421 22222334444555555444 455555555555544432 11
Q ss_pred ---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC
Q 005002 122 ---SKALLKRAQCYKAL-NRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~L-GryeeAl~d~ekAL~LdP 153 (720)
..++.++|.+|..+ |++++|+..|++++.+.|
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 23444445555442 555555555555554444
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=1.8e-10 Score=108.67 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|++++|+..|++++.++|++. .++.++|.+|+.+ |++++|+..+++++.++| ++..+..++
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~--g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLET--KQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHT--TCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHC--CCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 456788999999999999999999999999988 5999999999997 999999999999999999 877666666
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCCCCCCC--CcchhhHHHHHHHH
Q 005002 130 QCYK-ALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGLDSSGE--AHGALRFRKLVKEK 204 (720)
Q Consensus 130 ~Ay~-~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~~P~~--P~~~~~l~~i~k~k 204 (720)
.+.. ..+....|+..|++++.++|++..++..++.+....++...+.. .+...+. |.. +.....++.++...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN---LGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---cccChHHHHHHHHHHHHHh
Confidence 4432 33344567889999999999999999999999888875544433 4445444 443 33555677777766
Q ss_pred hhh
Q 005002 205 VKK 207 (720)
Q Consensus 205 ~kk 207 (720)
|+.
T Consensus 158 g~~ 160 (176)
T 2r5s_A 158 GQG 160 (176)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=3.1e-10 Score=126.61 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=103.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDF 140 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryee 140 (720)
.|++++|+..|++++.++|.+. .+|+++|.+|+.+ |+|++|+..++++++++|+++.+++.+|.+|..+|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGM--GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4789999999999999999988 5999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHH
Q 005002 141 AFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 141 Al~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k 204 (720)
|+..|++++.++|++..++..++.++..+++...+ ..++...+. |..+.....++.++...
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988855443 336666777 77777777777777766
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=7e-10 Score=113.58 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCCC--
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQ-MGLGEFPRAINECNLALEVSSKY-- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~k-L~~gdyeeAI~d~~kALeLdP~~-- 121 (720)
.+..+.+.|+.+...|+|++|+.+|++|+.+.|.... ..+.++.++|.+|.. + |+|++|+.+|++||++.|..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l--g~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL--HDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHhCCC
Confidence 3678889999999999999999999999999997542 246799999999998 5 99999999999999998854
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHhhhhccChhHHhhhcC
Q 005002 122 ----SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS-------ALEVLESVKQSMIEKGIDIDEKMKEFG 184 (720)
Q Consensus 122 ----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~-------A~~~L~~lk~~l~eka~a~~ek~~~L~ 184 (720)
..++.++|.+|..+|+|++|+..|++++.+.|++.. ++..++.+...+++...+...-...+.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 568999999999999999999999999999998754 456777777777655444443333343
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.09 E-value=4e-11 Score=126.42 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---------------HHHH
Q 005002 61 KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---------------SKAL 125 (720)
Q Consensus 61 ~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---------------~KAy 125 (720)
.+++++|+..|.+++.+.|.+. .++.++|.+|++. |+|++|+..|++||+++|++ ..+|
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a----~~~~~~g~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQS----TIVKERGTVYFKE--GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 4567778888888888877766 6999999999998 99999999999999999998 6999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
+++|.||..+|+|++|+.+|++++.++|++..++..++.++..+++...+ ...+...+. |..+.....++.++..
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999855444 346777888 8888777788888877
Q ss_pred Hhhhhhc
Q 005002 204 KVKKKKK 210 (720)
Q Consensus 204 k~kkkK~ 210 (720)
.++..+.
T Consensus 277 ~~~~~~a 283 (336)
T 1p5q_A 277 IRRQLAR 283 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.07 E-value=1.7e-09 Score=100.30 Aligned_cols=105 Identities=20% Similarity=0.135 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 84 DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 84 d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
..+..+.++|.+|+.. |+|++|+..|+++|+++|+++.+|+.+|.||..+|+|++|+.+|++++.++|++..++..++
T Consensus 9 ~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMAR--KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3567999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCh--hHHhhhcCCCCCCCCcc
Q 005002 164 SVKQSMIEKGIDI--DEKMKEFGLDSSGEAHG 193 (720)
Q Consensus 164 ~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~ 193 (720)
.++..+++...+. ..+...+. |..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 115 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE---GNGGSD 115 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH---SSSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC---CCchHH
Confidence 9999998554443 36667777 776663
No 113
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=8.7e-10 Score=107.21 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL-----PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV--- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~-----P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL--- 117 (720)
..+..+...|..++..|+|++|+..|.+++.+. +++ +..+.++.++|.+|..+ |++++|+..+.+++.+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH-PAVAATLNNLAVLYGKR--GKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999885 332 34568999999999997 9999999999999998
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhhhc
Q 005002 118 -----SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM--------EPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 118 -----dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L--------dP~n~~A~~~L~~lk~~l~eka 173 (720)
+|....+++.+|.+|..+|++++|+..|++++.+ +|....++..++.+...+++..
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 5778899999999999999999999999999999 7777888899999988887543
No 114
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=2e-09 Score=91.67 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSAL 159 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~ 159 (720)
+..+.++|.+++.. |+|++|+..|+++++++|+++.+++++|.||..+|++++|+.+|++++.++|++ ..++
T Consensus 4 ~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 46899999999997 999999999999999999999999999999999999999999999999999999 8888
Q ss_pred HHHHHHHHHhhhhccC
Q 005002 160 EVLESVKQSMIEKGID 175 (720)
Q Consensus 160 ~~L~~lk~~l~eka~a 175 (720)
..++.+...++....+
T Consensus 82 ~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhHhhh
Confidence 8899988888754433
No 115
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.03 E-value=3.6e-09 Score=116.11 Aligned_cols=159 Identities=11% Similarity=-0.024 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..+++.|++++|+..|++++.+.|.+. .+|++++.+|.+. |++++|+..+++++++.|++..+++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG----PAWIGFAHSFAIE--GEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHH
Confidence 45677788888888888888888888888888877 4888888888887 88888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCC---CCCC-CcchhhHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLD---SSGE-AHGALRFRKLV 201 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~---~P~~-P~~~~~l~~i~ 201 (720)
+|.+|...|++++|+..|++++.++|++..++..+..+....+....+. ..+...+... .|.. +.....++.++
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888877776443332 2333332100 1221 23445566666
Q ss_pred HHHhhhhhccc
Q 005002 202 KEKVKKKKKNG 212 (720)
Q Consensus 202 k~k~kkkK~~k 212 (720)
...|+.....+
T Consensus 527 ~~~g~~~~A~~ 537 (597)
T 2xpi_A 527 RKLKMYDAAID 537 (597)
T ss_dssp HHTTCHHHHHH
T ss_pred HHhcCHHHHHH
Confidence 66666555433
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.03 E-value=5.9e-10 Score=100.88 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------
Q 005002 84 DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS------ 157 (720)
Q Consensus 84 d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~------ 157 (720)
+.+.++.++|.+|++. |+|++|+..|++||+++|+++.+|+++|.||..+|+|++|+.+|++++.++|++..
T Consensus 6 d~A~a~~~lG~~~~~~--~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQ--KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 4578999999999997 99999999999999999999999999999999999999999999999999988753
Q ss_pred -HHHHHHHHHHHhhhh
Q 005002 158 -ALEVLESVKQSMIEK 172 (720)
Q Consensus 158 -A~~~L~~lk~~l~ek 172 (720)
++..++.+...++..
T Consensus 84 ~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDL 99 (127)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCH
Confidence 455566666655543
No 117
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.03 E-value=2.6e-09 Score=117.29 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
...+...|..+.+.|++++|+..|++++.+.|.+. .+|++++.+|.+. |++++|+..++++++++|.++.+|+.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH----LPYLFLGMQHMQL--GNILLANEYLQSSYALFQYDPLLLNE 480 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45778888999999999999999999999988877 5888889888887 89999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc------CCCC-HHHHHHHHHHHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSM------EPNN-SSALEVLESVKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFR 198 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~L------dP~n-~~A~~~L~~lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~ 198 (720)
+|.+|...|++++|+..|++++.+ +|++ ..++..+..+....++...+ ..++...+. |..+.....++
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~ 557 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SCCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHH
Confidence 999999999999999999998888 6665 77888888888877744433 335556666 77777777888
Q ss_pred HHHHHHhhhhhccch
Q 005002 199 KLVKEKVKKKKKNGK 213 (720)
Q Consensus 199 ~i~k~k~kkkK~~k~ 213 (720)
.++...|+.....+-
T Consensus 558 ~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 558 LVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHhCCHHHHHHH
Confidence 888777776654433
No 118
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=9.3e-10 Score=117.38 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH----IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK 123 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~----~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K 123 (720)
+..+.+.|..++..|+|++|+.+|++++.+.+... .+.+.+++++|.+++.++.++|++|+..|++||+++|+++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 34567899999999999999999999998865322 13457899999999888667899999999999999999999
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc------cChhHHhhhcCCCCCCCCcch
Q 005002 124 ALLKRAQCYKA---LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG------IDIDEKMKEFGLDSSGEAHGA 194 (720)
Q Consensus 124 Ay~rrA~Ay~~---LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka------~a~~ek~~~L~~~~P~~P~~~ 194 (720)
+++.+|.++.. .+++++|+..|++++.++|++..++..+......+.... ...-++...+. |..+...
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~ 250 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHH
Confidence 99999998655 577899999999999999999999988887766554221 12224555566 7777777
Q ss_pred hhHHHHHHHHhhh
Q 005002 195 LRFRKLVKEKVKK 207 (720)
Q Consensus 195 ~~l~~i~k~k~kk 207 (720)
..++.++...++.
T Consensus 251 ~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 251 RSAAKFYRRKDEP 263 (472)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCch
Confidence 7777777665543
No 119
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.02 E-value=1.1e-10 Score=128.36 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---------------HHHHH
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---------------SKALL 126 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---------------~KAy~ 126 (720)
++|++|+..|..++...|... ..|.++|.+|++. ++|.+|+..|++||+++|.+ ..+|+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a----~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQA----AIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 456677778888777777655 6999999999997 99999999999999999998 79999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~k~k 204 (720)
++|.||..+|+|++|+.+|+++|.++|++..++..++.++..+++...+. ..+...+. |..+.....++.++...
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998554443 46777777 88888888888877776
Q ss_pred hhhhh
Q 005002 205 VKKKK 209 (720)
Q Consensus 205 ~kkkK 209 (720)
++..+
T Consensus 399 ~~~~~ 403 (457)
T 1kt0_A 399 KEHNE 403 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 120
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.02 E-value=9e-10 Score=117.49 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...|..++..|++++|+..|.+++.+.|.+. .++.++|.+|..+ |++++|+..+.++++.+|+++.+++.+|
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAYRE--NKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTTTT--TCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 445566666666666666666666666666655 3666666666665 6666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHH---hhhhccC--hhHHhhhcCCCCCCCCcchhhHH
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSS------ALEVLESVKQS---MIEKGID--IDEKMKEFGLDSSGEAHGALRFR 198 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~------A~~~L~~lk~~---l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~ 198 (720)
.+|..+|++++|+..|++++.++|++.. ++..++.+... .++...+ ...+...+. |..+.....++
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la 456 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLA 456 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 6666666666666666666666666543 55666666555 4433222 223444444 55555455555
Q ss_pred HHHHHHhhh
Q 005002 199 KLVKEKVKK 207 (720)
Q Consensus 199 ~i~k~k~kk 207 (720)
.++...++.
T Consensus 457 ~~~~~~g~~ 465 (514)
T 2gw1_A 457 QMKLQQEDI 465 (514)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhcCH
Confidence 555554443
No 121
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=1.4e-09 Score=113.58 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV------SS 119 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL------dP 119 (720)
..+..+...|..++..|+|++|+..|++++.+.|.++...+.++.++|.+|+.+ |+|++|+..+.+++++ +|
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--GDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHccCch
Confidence 567889999999999999999999999999999998766678999999999998 9999999999999998 67
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhhh
Q 005002 120 KYSKALLKRAQCYKALNRLDFAFRDVNNVLSM------EPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 120 ~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L------dP~n~~A~~~L~~lk~~l~e 171 (720)
....+++.+|.+|..+|++++|+..|++++.+ .|....++..++.+...+++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 78899999999999999999999999999998 44555666667766665543
No 122
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=3.8e-09 Score=86.84 Aligned_cols=79 Identities=25% Similarity=0.356 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
.+++++|.+|+.. ++|++|+..+.++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.
T Consensus 10 ~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455555555554 55555555555555555555555555555555555555555555555555555555555555544
Q ss_pred H
Q 005002 167 Q 167 (720)
Q Consensus 167 ~ 167 (720)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=4e-09 Score=86.74 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|..++..|+|++|+..|.+++.+.|.+. .++.++|.+|+.+ |++++|+..+.++++++|+++.++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCHHHH
Confidence 4567889999999999999999999999999999988 5999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 005002 126 LKRAQCYKALN 136 (720)
Q Consensus 126 ~rrA~Ay~~LG 136 (720)
+.+|.++..+|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 124
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.01 E-value=4.2e-09 Score=108.73 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=91.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005002 57 KLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALN 136 (720)
Q Consensus 57 ~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LG 136 (720)
.+...|+|++|+..|++++...|.++ .+++++|.||+++ |++++|+..++++|+++|+++.+++++|.++..+|
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~p~~~----~~~~~la~~~~~~--g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKCSPTL----LLLNGQAACHMAQ--GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhCchHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456899999999999999999988 6999999999998 99999999999999999999999999999999999
Q ss_pred CHHH-HHHHHHHHHHcCCCCHHHHHHH
Q 005002 137 RLDF-AFRDVNNVLSMEPNNSSALEVL 162 (720)
Q Consensus 137 ryee-Al~d~ekAL~LdP~n~~A~~~L 162 (720)
++++ +..++++++.++|+++.+....
T Consensus 249 ~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 249 KPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9987 5688999999999999887643
No 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.01 E-value=1.2e-09 Score=101.06 Aligned_cols=102 Identities=17% Similarity=0.082 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEV------------------SSKYSKALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL------------------dP~~~KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
.+..+.++|.++++. |+|.+|+..|.+||.+ +|.++.+|+++|.||..+|+|++|+.+++
T Consensus 10 ~a~~~~~~G~~~~~~--~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQ--KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 467899999999997 9999999999999999 78888999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCC
Q 005002 147 NVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEA 191 (720)
Q Consensus 147 kAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P 191 (720)
+++.++|++..++..++.++..+++...+. ..+...+. |..+
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~---p~~~ 131 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH---PAAA 131 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---GGGH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC---CCCH
Confidence 999999999999999999999998655443 36667777 6554
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.5e-09 Score=94.46 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
+..+.++|.+++.. |+|++|+..|+++|+++|+++.+|+.+|.||..+|+|++|+.+|++++.++|++..++..++.+
T Consensus 4 a~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTK--SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56899999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccC
Q 005002 166 KQSMIEKGID 175 (720)
Q Consensus 166 k~~l~eka~a 175 (720)
...+++...+
T Consensus 82 ~~~~~~~~~A 91 (126)
T 3upv_A 82 QIAVKEYASA 91 (126)
T ss_dssp HHHTTCHHHH
T ss_pred HHHHhCHHHH
Confidence 9988755433
No 127
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.01 E-value=3.1e-09 Score=94.11 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
..+.++|.+++.. |+|++|+..+.+++.++|+++.+++.+|.||..+|++++|+..|++++.++|++..++..++.+.
T Consensus 10 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 6999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCh--hHHhhhcC
Q 005002 167 QSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 167 ~~l~eka~a~--~ek~~~L~ 184 (720)
..+++...+. ..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 9888554333 24444444
No 128
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=4.8e-10 Score=94.93 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAY-LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~-l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
+.|..++..|+|++|+..|++++.+.|.+. . ++.++|.||+.+ |++++|+..|.++++++|++..++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~---- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGK----DEAYYLMGNAYRKL--GDWQKALNNYQSAIELNPDSPALQAR---- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTH----HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHHHH----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHH----
Confidence 455666666666666666666666666555 4 566666666665 66666666666666666666655533
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC
Q 005002 132 YKALNRLDFAFRDVNNVLSMEPNN 155 (720)
Q Consensus 132 y~~LGryeeAl~d~ekAL~LdP~n 155 (720)
+.+.+|+..|++++.++|++
T Consensus 75 ----~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ----KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ----HHHHHHHHHHCCTTHHHHCC
T ss_pred ----HHHHHHHHHHHHHhccCccc
Confidence 44555555555555555544
No 129
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=1.7e-09 Score=102.00 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|++++|+..|++++.+.| ++ .++..++.+.+.. .+....|+..++++++++|+++.+++.
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----~~~~~~~~~~~~~-~~~~~~a~~~~~~al~~~P~~~~~~~~ 113 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----SYKSLIAKLELHQ-QAAESPELKRLEQELAANPDNFELACE 113 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH----HHHHHHHHHHHHH-HHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch----HHHHHHHHHHHHh-hcccchHHHHHHHHHHhCCCCHHHHHH
Confidence 45788999999999999999999999999999 66 3444445443221 134456899999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhhhc
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLSMEPNN--SSALEVLESVKQSMIEKG 173 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~LdP~n--~~A~~~L~~lk~~l~eka 173 (720)
+|.++..+|++++|+..|++++.++|+. ..++..+..+...+++..
T Consensus 114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999985 669999999998887544
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.98 E-value=2e-09 Score=90.52 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=84.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 005002 78 LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN--N 155 (720)
Q Consensus 78 ~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~--n 155 (720)
+|++. .++.++|.+++.. |++++|+..++++++++|.+..+++.+|.++..+|++++|+..|++++.++|+ +
T Consensus 2 ~p~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 2 VDQNP----EEYYLEGVLQYDA--GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp CCSST----TGGGGHHHHHHSS--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC
T ss_pred CCCcH----HHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch
Confidence 56666 4889999999997 99999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHh-hhhccC
Q 005002 156 SSALEVLESVKQSM-IEKGID 175 (720)
Q Consensus 156 ~~A~~~L~~lk~~l-~eka~a 175 (720)
..++..++.+...+ ++...+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A 96 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEA 96 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHH
Confidence 99999999998888 754433
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=1.8e-09 Score=110.79 Aligned_cols=119 Identities=8% Similarity=-0.063 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+...|++++|+..|++++.++|+.. ..+.+.+..+... +++..|+..+.+++.++|+++.+++.+
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~----~~~~~~~~~l~~~--~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR----YQGLVAQIELLXQ--AADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH----HHHHHHHHHHHHH--HTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH----HHHHHHHHHHHhh--cccCccHHHHHHHHhcCCccHHHHHHH
Confidence 4677899999999999999999999999999544 5677777777776 889999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhhhc
Q 005002 129 AQCYKALNRLDFAFRDVNNVLSMEPNN--SSALEVLESVKQSMIEKG 173 (720)
Q Consensus 129 A~Ay~~LGryeeAl~d~ekAL~LdP~n--~~A~~~L~~lk~~l~eka 173 (720)
|.+|...|++++|+..|.+++.++|++ ..++..+..+...+++..
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999998 889999999999887543
No 132
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.97 E-value=2.1e-09 Score=104.18 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK-------YSK-----ALLKRAQCYKALNRLDFAFRDVNNVLSM-- 151 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~-------~~K-----Ay~rrA~Ay~~LGryeeAl~d~ekAL~L-- 151 (720)
+..+.++|.+++++ |+|++|+..|++||+++|+ +.. +|+++|.|+..+|+|++|+.+|+++|.+
T Consensus 11 a~~~~~~G~~l~~~--g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVA--GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 56889999999998 9999999999999999999 554 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcch
Q 005002 152 -----EPNNSSAL----EVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGA 194 (720)
Q Consensus 152 -----dP~n~~A~----~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~ 194 (720)
+|++..++ .+++.++..+++...+. .++...+. |......
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~---p~d~~~~ 139 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI---EERKGET 139 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHCCSCC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHHH
Confidence 99999999 99999999998655443 36667766 5444433
No 133
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.97 E-value=2.7e-09 Score=105.58 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV------SSKY 121 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL------dP~~ 121 (720)
+..+...|..++..|+|++|+..|++++.+.|.++...+.++.++|.+|+.+ |++++|+..+.+++.+ .|..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhcccccHHH
Confidence 5578889999999999999999999999999998766678999999999998 9999999999999988 5566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhh
Q 005002 122 SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS------SALEVLESVKQSMIE 171 (720)
Q Consensus 122 ~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~------~A~~~L~~lk~~l~e 171 (720)
..+++.+|.+|..+|++++|+..|++++.+.|... .++..++.+...+++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 88999999999999999999999999999866432 255555655555543
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.96 E-value=4.6e-09 Score=94.37 Aligned_cols=95 Identities=6% Similarity=0.004 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
.++++|.+++.. |++++|+..+.++++++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.+..
T Consensus 19 ~~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKL--ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567899999997 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccChh--HHhhhcC
Q 005002 168 SMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 168 ~l~eka~a~~--ek~~~L~ 184 (720)
.+++...+.. ++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8886544333 4444444
No 135
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=4.8e-09 Score=92.90 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY-- 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~-- 121 (720)
..+..+...|..++..|+|++|+..|.+++.+.+... ...+.++.++|.+|+.+ |++++|+..+.+++++.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCC
Confidence 5678899999999999999999999999999987533 23567999999999998 99999999999999986543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhh
Q 005002 122 ----SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMIE 171 (720)
Q Consensus 122 ----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~e 171 (720)
..+++.+|.++..+|++++|+..+++++.+.+.. ..+...++.+...+++
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 6789999999999999999999999999874322 3455666666666654
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=9.1e-09 Score=93.06 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..++..|+|++|+..|.+++.++|.+. .++.++|.+|..+ |++++|+..+.++++++|.+..++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~ 120 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMK 120 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45677899999999999999999999999999988 5999999999998 99999999999999999999998855
Q ss_pred HHHH--HHHcCCHHHHHHHHHHHHHc
Q 005002 128 RAQC--YKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 128 rA~A--y~~LGryeeAl~d~ekAL~L 151 (720)
++.+ +..+|++++|+..+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 121 YQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHH
Confidence 5544 88899999999999887654
No 137
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.92 E-value=5.4e-09 Score=107.68 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV------SSKY 121 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL------dP~~ 121 (720)
+..+...|..++..|+|++|+..|++++.+.|.++...+.++.++|.+|+.+ |+|++|+..+.+++.+ .|..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4578889999999999999999999999999998765678999999999998 9999999999999988 4556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhh
Q 005002 122 SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMIE 171 (720)
Q Consensus 122 ~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~e 171 (720)
..+++.+|.+|..+|++++|+..|++++.+.|.. ..++..++.+...+++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999987653 3355566666555543
No 138
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.92 E-value=5.7e-09 Score=90.28 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=73.5
Q ss_pred hCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 005002 77 LLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN-- 154 (720)
Q Consensus 77 L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~-- 154 (720)
.+|+++ .+++++|.+|+.+ |+|++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|.
T Consensus 2 ~~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDP----FTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp ---CCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 357777 6999999999998 99999999999999999999999999999999999999999999999999775
Q ss_pred CHHHHHHHHHHHHHh
Q 005002 155 NSSALEVLESVKQSM 169 (720)
Q Consensus 155 n~~A~~~L~~lk~~l 169 (720)
+..+...+..+....
T Consensus 76 ~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 76 TQKDLSELQDAKLKA 90 (100)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHc
Confidence 455555555554433
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.92 E-value=1.1e-09 Score=104.81 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=109.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----------------H
Q 005002 60 QKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS----------------K 123 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~----------------K 123 (720)
..|+|+.|...|.......+. .+..+.++|.+++.. |+|++|+..|.+++++.|.++ .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQ----SAFDIKEEGNEFFKK--NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------CCCSGGGCCHHHHHH----HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHH----HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 345566666555544333222 346899999999997 999999999999999999887 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHH
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
+++++|.||..+|+|++|+.+|++++.++|++..++..++.+...+++...+. ..+...+. |..+.....++.+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988554443 36667777 77777777777777
Q ss_pred HHHhhhhh
Q 005002 202 KEKVKKKK 209 (720)
Q Consensus 202 k~k~kkkK 209 (720)
...++..+
T Consensus 167 ~~~~~~~~ 174 (198)
T 2fbn_A 167 NKLKEARK 174 (198)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 66655444
No 140
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.92 E-value=2.3e-09 Score=106.33 Aligned_cols=126 Identities=21% Similarity=0.146 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK----NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV---- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~----~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL---- 117 (720)
..+..+...|..++..|+|++|+..|.+++.+... +.+..+.++.++|.+|..+ |++++|+..+.+++.+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ--NKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999999999999997321 2224568999999999998 9999999999999988
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhhhc
Q 005002 118 ----SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSME--------PNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 118 ----dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld--------P~n~~A~~~L~~lk~~l~eka 173 (720)
+|....+++.+|.+|..+|++++|+..|++++.+. |....++..++.+....++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 46678899999999999999999999999999984 555667778888877766443
No 141
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.91 E-value=5.5e-09 Score=109.67 Aligned_cols=126 Identities=10% Similarity=0.129 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI---DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY- 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~---d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~- 121 (720)
..+..+...|..++..|+|+.|+..|.+|+.+.+.... ..+.++.++|.+|..+ |+|++|+..+.+|+++.|..
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL--KQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHcC
Confidence 35667788888888888888888888888887765532 3567888888888887 88888888888888775432
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-CCCHHHHHHHHHHHHHhhhhc
Q 005002 122 -----SKALLKRAQCYKALNRLDFAFRDVNNVLS-----ME-PNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 122 -----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~-----Ld-P~n~~A~~~L~~lk~~l~eka 173 (720)
..+++++|.+|..+|++++|+..|++++. .+ |....++..++.+...+++..
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence 25788888888888888888888888888 45 667777888888877776443
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=9.9e-09 Score=89.13 Aligned_cols=114 Identities=19% Similarity=0.327 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
....++++|.+++.. ++|++|+..++++++++|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..++.
T Consensus 15 ~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQK--GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHT--TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 165 VKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 165 lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
+...+++...+ ...+...+. |..+.....++.++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD---SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---GGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHH
Confidence 99988754433 335555565 5555555455554433
No 143
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=4.4e-09 Score=102.20 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL-----PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV--- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~-----P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL--- 117 (720)
..+..+...|..++..|+|++|+..|.+++.+. |+++ ....++.++|.+|..+ |++++|+..+.+++++
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP-DVAKQLNNLALLCQNQ--GKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHH
Confidence 446678889999999999999999999999984 3222 4557999999999998 9999999999999999
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHH
Q 005002 118 -----SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM---------EPNNSSALEVLESVKQ 167 (720)
Q Consensus 118 -----dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L---------dP~n~~A~~~L~~lk~ 167 (720)
+|....+++.+|.+|..+|++++|+..|++++.+ .+....++..+..+..
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 7778899999999999999999999999999987 4444555555555444
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=1.9e-08 Score=85.04 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
+..+.++|.+++.. |+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..+++++.++|++..++..++.+
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSV--GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46889999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCh--hHHhhhcCCCCCCCCc
Q 005002 166 KQSMIEKGIDI--DEKMKEFGLDSSGEAH 192 (720)
Q Consensus 166 k~~l~eka~a~--~ek~~~L~~~~P~~P~ 192 (720)
...+++...+. ..+...+. |..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~---~~~~~ 107 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE---ANNPQ 107 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC---TTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC---CCCHH
Confidence 98887544333 34455555 55443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=2.6e-08 Score=85.50 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
.+..+..+|.+++.. ++|++|+..+.+++.++|+++.+++.+|.++..+|++++|+..|.+++.++|++..++..++.
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKV--ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 357899999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHHHHHh
Q 005002 165 VKQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLVKEKV 205 (720)
Q Consensus 165 lk~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~k~k~ 205 (720)
+...+++...+ .-.+...+. |..+.....++.+....+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD---PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHh
Confidence 99888754433 335566666 666665555666555443
No 146
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=1.1e-08 Score=105.13 Aligned_cols=147 Identities=13% Similarity=0.017 Sum_probs=112.7
Q ss_pred HHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 50 ELKEEGNKLF-------QKRDH-------EGAMLKYEKALK-LLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114 (720)
Q Consensus 50 ~lKeeGn~lf-------k~Gdy-------eeAl~~Y~kAL~-L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA 114 (720)
.+...|..+. ..|++ ++|+..|++|+. +.|++. .+|.++|.++..+ |++++|+..|+++
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~a 125 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM----LLYFAYADYEESR--MKYEKVHSIYNRL 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 3445555554 46886 999999999999 799887 5999999999997 9999999999999
Q ss_pred HHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhh--hccChhHHhhhcCCCCCCC
Q 005002 115 LEVSSKYSK-ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS-MIE--KGIDIDEKMKEFGLDSSGE 190 (720)
Q Consensus 115 LeLdP~~~K-Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~-l~e--ka~a~~ek~~~L~~~~P~~ 190 (720)
|+++|.++. +|+.+|.++...|++++|+..|++++.++|.+..++.....+... .++ .+...-++...+. |..
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~ 202 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDI 202 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTC
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc
Confidence 999999886 999999999999999999999999999999987776655444322 222 2223335555555 666
Q ss_pred CcchhhHHHHHHHHh
Q 005002 191 AHGALRFRKLVKEKV 205 (720)
Q Consensus 191 P~~~~~l~~i~k~k~ 205 (720)
+.....++......|
T Consensus 203 ~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 203 PEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
Confidence 665555555554433
No 147
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.87 E-value=2.1e-08 Score=102.93 Aligned_cols=130 Identities=8% Similarity=-0.103 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+...|++++|+..|++|+.+.|.++. .+|.++|.++... |++++|+..|.+|++++|.+..+|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA--EGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHH--HCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 35678889999999999999999999999998872 3899999999997 999999999999999999998888876
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc--ChhHHhhhc
Q 005002 129 AQCYKA-LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI--DIDEKMKEF 183 (720)
Q Consensus 129 A~Ay~~-LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~--a~~ek~~~L 183 (720)
+..... +|++++|+..|++++.++|++..++..+..+...+++... ..-++....
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 666443 7999999999999999999999999999988877764433 233555553
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.87 E-value=2.1e-08 Score=114.13 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRD----------HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG--EFPRAINECNLAL 115 (720)
Q Consensus 48 A~~lKeeGn~lfk~Gd----------yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g--dyeeAI~d~~kAL 115 (720)
...+..+|..+...|+ |++|+..|+++|..+|++. .+|++|+.++.++ + +|++++..|+++|
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~aW~hR~w~l~~l--~~~~~~~el~~~~k~l 136 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRCWLLSRL--PEPNWARELELCARFL 136 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTC--SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--ccccHHHHHHHHHHHH
Confidence 3567788899888888 9999999999999999999 6999999999998 7 7799999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh----------------ccChhH
Q 005002 116 EVSSKYSKALLKRAQCYKALN-RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK----------------GIDIDE 178 (720)
Q Consensus 116 eLdP~~~KAy~rrA~Ay~~LG-ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek----------------a~a~~e 178 (720)
+++|.+..||+.|+.++..+| .+++++.++.+++.++|.|..++..+..+...+... +.....
T Consensus 137 ~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~ 216 (567)
T 1dce_A 137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 216 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999998886321 112224
Q ss_pred HhhhcCCCCCCCCcchhhHHHHHHH
Q 005002 179 KMKEFGLDSSGEAHGALRFRKLVKE 203 (720)
Q Consensus 179 k~~~L~~~~P~~P~~~~~l~~i~k~ 203 (720)
++..+. |.+++++.-.+.++..
T Consensus 217 ~ai~~~---P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 217 NAFFTD---PNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHC---SSCSHHHHHHHHHHSC
T ss_pred HHHhhC---CCCccHHHHHHHHHhc
Confidence 556667 8888877766666643
No 149
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=4.7e-08 Score=111.35 Aligned_cols=147 Identities=10% Similarity=-0.018 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHhC
Q 005002 50 ELKEEGNKLFQKRDH-EGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGE----------FPRAINECNLALEVS 118 (720)
Q Consensus 50 ~lKeeGn~lfk~Gdy-eeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gd----------yeeAI~d~~kALeLd 118 (720)
.+......+.+.|.| ++|+..|+++|.++|++. .+|++|+.++..+ ++ |++++..++++|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l--~~~~~~~~~~~~~~~eL~~~~~~l~~~ 103 (567)
T 1dce_A 30 SATQAVFQKRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHL--ETEKSPEESAALVKAELGFLESCLRVN 103 (567)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhc--ccccchhhhhhhHHHHHHHHHHHHHhC
Confidence 333344455566776 678999999999999999 6999999999998 66 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-h--hccChhHHhhhcCCCCCCCCcc
Q 005002 119 SKYSKALLKRAQCYKALN--RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI-E--KGIDIDEKMKEFGLDSSGEAHG 193 (720)
Q Consensus 119 P~~~KAy~rrA~Ay~~LG--ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~-e--ka~a~~ek~~~L~~~~P~~P~~ 193 (720)
|++..+|+.|+.++..++ ++++|+.++.++++++|.|..|+.....+...++ . .+.....+..... |.+.++
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~sa 180 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSS 180 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHH
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccH
Confidence 999999999999999999 7799999999999999999999999999998886 2 2222335556666 888888
Q ss_pred hhhHHHHHHHHh
Q 005002 194 ALRFRKLVKEKV 205 (720)
Q Consensus 194 ~~~l~~i~k~k~ 205 (720)
+...+.++....
T Consensus 181 W~~r~~ll~~l~ 192 (567)
T 1dce_A 181 WHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhc
Confidence 888888776643
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=3.5e-08 Score=83.94 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
+.+++++|.++... |++++|+..+.+++..+|.++.+++.+|.++...|++++|+..|++++.++|.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 36899999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccC--hhHHhhhcCCCCCCCCcchhhHHHHH
Q 005002 166 KQSMIEKGID--IDEKMKEFGLDSSGEAHGALRFRKLV 201 (720)
Q Consensus 166 k~~l~eka~a--~~ek~~~L~~~~P~~P~~~~~l~~i~ 201 (720)
...+++...+ ...+...+. |..+.....++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD---PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHH
Confidence 8888744333 335555566 66555544444443
No 151
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.85 E-value=5.2e-08 Score=96.94 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCCCCHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQ----MGLGEFPRAINECNLALEVSSKYSK 123 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~k----L~~gdyeeAI~d~~kALeLdP~~~K 123 (720)
+..+...|..++..|++++|+..|.+++. |++. .+++++|.+|.. . +++++|+..+.++++++ ++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~----~a~~~lg~~~~~g~~~~--~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN----SGCFNLGVLYYQGQGVE--KNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT--CHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCcC--CCHHHHHHHHHHHHHCC--CHH
Confidence 45778899999999999999999999998 6655 589999999999 8 99999999999999986 899
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 124 ALLKRAQCYKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 124 Ay~rrA~Ay~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
+++.+|.+|.. .+++++|+..|++++.+ ++..++..++.+...
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHc
Confidence 99999999999 99999999999999988 489999999999887
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1.2e-08 Score=103.77 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL---PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV----- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~---P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----- 117 (720)
..+.-+...|..++..++|++|+..|.+|+.+. ++.... +.+++++|.+|..+ |+|++|+..+.+||++
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~-~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~~~ 189 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN-LYIENAIANIYAEN--GYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcc
Confidence 445566667777777777777777777777642 232111 14677777777776 7777777777777742
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhh
Q 005002 118 --SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMI 170 (720)
Q Consensus 118 --dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~ 170 (720)
.+....+|+++|.+|..+|+|++|+..+++++.+.+.. ..++..++.+...++
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence 22345577777777777777777777777777765443 567777777777776
No 153
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.83 E-value=1.8e-08 Score=105.68 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----hC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE-----VS 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe-----Ld 118 (720)
..+..+...|..+...|+|++|+..|.+|+.+.+... ...+.++.|+|.||..+ |+|++|+..+.+|++ .+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ--SQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhcc
Confidence 4567888999999999999999999999999987543 24577999999999998 999999999999999 46
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 119 -SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 119 -P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
|..+.+++.+|.+|..+|++++|+..|++++.+.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999853
No 154
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=1.5e-08 Score=100.45 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL-----PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-- 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~-----P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-- 118 (720)
..+..+...|..++..|+|++|+..|.+++.+. ++. +....++.++|.+|..+ |++++|+..+.+++++.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH-PAVAATLNNLAVLYGKR--GKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999885 222 24567999999999998 99999999999999884
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhhhc
Q 005002 119 ------SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM--------EPNNSSALEVLESVKQSMIEKG 173 (720)
Q Consensus 119 ------P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L--------dP~n~~A~~~L~~lk~~l~eka 173 (720)
|....+++.+|.+|..+|++++|+..|++++.+ +|....++..++.+...+++..
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 212 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 667789999999999999999999999999998 6777788888888888877543
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=6.6e-08 Score=102.32 Aligned_cols=151 Identities=10% Similarity=-0.148 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH----HHcC-CCCHHHHHHHHHHHHHhCCC
Q 005002 48 SQELKEEGNKLFQKR--DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCY----MQMG-LGEFPRAINECNLALEVSSK 120 (720)
Q Consensus 48 A~~lKeeGn~lfk~G--dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y----~kL~-~gdyeeAI~d~~kALeLdP~ 120 (720)
...+..+|..+...+ ++++|+..+.++|.++|++. .+|++|+.++ ..++ .+++.+++..|+++|+.+|.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 344567777777777 78888888888888888777 5777777777 4431 15677888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh--------ccChhHHhhhcCCCCCCC
Q 005002 121 YSKALLKRAQCYKALNRLD--FAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK--------GIDIDEKMKEFGLDSSGE 190 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGrye--eAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek--------a~a~~ek~~~L~~~~P~~ 190 (720)
+..+++.|+.++..+|+++ +++..+++++.++|.|-.|+.....+...++.. ......+...+. |.+
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~---p~n 219 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC---PQN 219 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC---SSC
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC---CCC
Confidence 8888888888888888777 788888888888888888887777776665431 111224445566 777
Q ss_pred CcchhhHHHHHHHHh
Q 005002 191 AHGALRFRKLVKEKV 205 (720)
Q Consensus 191 P~~~~~l~~i~k~k~ 205 (720)
.+++.-++.++...+
T Consensus 220 ~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 220 PSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhcC
Confidence 777777777766544
No 156
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.81 E-value=3.3e-08 Score=103.90 Aligned_cols=107 Identities=19% Similarity=0.097 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----hC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN--HIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE-----VS 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~--~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe-----Ld 118 (720)
..+..+...|..++..|+|++|+..|.+|+.+.+.. ....+.++.|+|.||..+ |++++|+..+.+|++ .+
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS--GDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhCC
Confidence 457788899999999999999999999999987643 224578999999999998 999999999999999 78
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 119 SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 119 P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
|..+.+++.+|.+|..+|++++|+..+++++.+.+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998554
No 157
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.81 E-value=1.8e-08 Score=105.91 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI---DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS--- 119 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~---d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP--- 119 (720)
..+..+...|..++..|++..|+..|.+|+.+.+.... ..+.++.++|.+|..+ |+|++|+..+.+|+++.+
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF--KHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcC
Confidence 34555566666666666666666666666665554321 2355666666666665 666666666666665522
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHhhh
Q 005002 120 ---KYSKALLKRAQCYKALNRLDFAFRDVNNVLS-----MEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 120 ---~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~-----LdP~n~~A~~~L~~lk~~l~e 171 (720)
....+++++|.+|..+|++++|+..|++++. .+|....+...++.+...+++
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 276 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC
Confidence 1234566666666666666666666666666 555555566666666665553
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=2e-08 Score=103.43 Aligned_cols=123 Identities=14% Similarity=0.037 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN--HIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~--~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--- 121 (720)
.+..+.+.|+.+...|+|++|+..|.+|+.+.+.. +...+.++.++|.+|.. |+|++|+..|++||++.|..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~---g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP---LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCCCh
Confidence 35567788888888888888888888888886543 22346788888888865 78889999999888887643
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhhhh
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS------SALEVLESVKQSMIEK 172 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~------~A~~~L~~lk~~l~ek 172 (720)
..+++++|.+|..+|+|++|+..|++++.+.|.+. .+...+..++..+++.
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 56788888999999999999999998888866542 2444555555555543
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=2.3e-08 Score=101.84 Aligned_cols=159 Identities=10% Similarity=-0.062 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY-- 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~-- 121 (720)
.....+.+.+..++..|+|++|+..|.+++...+..+. .....+.++|.+|... ++|++|+..+.+||.+.+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK--VDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHTCCCCSC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHHhccccc
Confidence 55668888999999999999999999999999987765 3557888899999886 99999999999999975432
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhhhhccChh--HHhhhcCC---
Q 005002 122 ----SKALLKRAQCYKALNRLDFAFRDVNNVLSM-------EPNNSSALEVLESVKQSMIEKGIDID--EKMKEFGL--- 185 (720)
Q Consensus 122 ----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L-------dP~n~~A~~~L~~lk~~l~eka~a~~--ek~~~L~~--- 185 (720)
..++..+|.+|..+|+|++|+..|++++.+ .|....+..+++.+...+++...+.. .+...+..
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 447999999999999999999999999953 12234577899999988885544432 44433320
Q ss_pred CCCCCCcchhhHHHHHHHHhh
Q 005002 186 DSSGEAHGALRFRKLVKEKVK 206 (720)
Q Consensus 186 ~~P~~P~~~~~l~~i~k~k~k 206 (720)
..+..+.....+|.++...++
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 011223445567777777664
No 160
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=98.80 E-value=1.1e-08 Score=90.97 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=56.4
Q ss_pred cCceEEEeccC----CCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCC------ceEEEEE
Q 005002 268 GDDIRWAQLPV----NCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQS------FLRLYIA 337 (720)
Q Consensus 268 g~DiR~~~~~~----~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~------~~rL~v~ 337 (720)
|-+||-|.|.+ ..+|.+|+.+|+++|+ ...+.|+|+|.|||||+|.|++|+.+++..++... |-.|+|+
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~-~~DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~~s~k~~FPWeLhvT 95 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHIT 95 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC-CSSEEEEEECTTSCEEECCSHHHHHHHHHHCCCCCCTTCBCSSCEEEE
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhc-ccceeeeeecCCCCEEEEcchHHHHHHHHHhhcCcccccccceeEEEe
Confidence 34567777644 3599999999999998 66899999999999999999999999999874322 2556666
Q ss_pred e
Q 005002 338 E 338 (720)
Q Consensus 338 e 338 (720)
.
T Consensus 96 ~ 96 (107)
T 1oey_J 96 Q 96 (107)
T ss_dssp E
T ss_pred e
Confidence 5
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=6.5e-08 Score=98.42 Aligned_cols=164 Identities=10% Similarity=-0.055 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHID--VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY- 121 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d--~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~- 121 (720)
......+...+..++..|+|++|+..|.+++...|..... ....++++|.+|... |+|++|+..+.+||++.+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK--VDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHTTCCCSS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcCC
Confidence 3677788889999999999999999999999988876542 445677788888886 89999999999999876543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH----HHHHHHHHHHHHhhhhccChh--HHhhhcCCC-
Q 005002 122 -----SKALLKRAQCYKALNRLDFAFRDVNNVL---SMEPNNS----SALEVLESVKQSMIEKGIDID--EKMKEFGLD- 186 (720)
Q Consensus 122 -----~KAy~rrA~Ay~~LGryeeAl~d~ekAL---~LdP~n~----~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~- 186 (720)
..+|+.+|.+|..+|+|++|+..|++++ ...|++. .+..+++.+...+++...+.. .+...+...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 6688999999999999999999999998 4566643 577888888887775443332 333333200
Q ss_pred --CCCCCcchhhHHHHHHHHhhhhhc
Q 005002 187 --SSGEAHGALRFRKLVKEKVKKKKK 210 (720)
Q Consensus 187 --~P~~P~~~~~l~~i~k~k~kkkK~ 210 (720)
....+.....++.++...++..+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 011123344567777777666553
No 162
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=2e-08 Score=103.42 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY-- 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~-- 121 (720)
..+..+.+.|..+.. |+|++|+.+|++|+.+.|.... ..+.++.++|.+|..+ |+|++|+..|++++++.|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ--QKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCC
Confidence 346778899999988 9999999999999999886432 2467999999999998 99999999999999987643
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 005002 122 ----SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157 (720)
Q Consensus 122 ----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~ 157 (720)
..+++.+|.++..+|++++|+..|++++ ++|+...
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3588999999999999999999999999 9997654
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=2.3e-08 Score=101.77 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HhCCCCH-
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKAL----KLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL---EVSSKYS- 122 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL----~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL---eLdP~~~- 122 (720)
+...|..+...|+|++|+..|.+|+ ........ +.+++++|.+|..+ |+|++|+..+.+|+ +..|++.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~lg~~y~~~--~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN--LYIENAIANIYAEN--GYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH--HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcCcccc
Confidence 3445555555555555555555554 21111111 13455555555554 55555555555554 4444422
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhh
Q 005002 123 ---KALLKRAQCYKALNRLDFAFRDVNNVLSMEPN------NSSALEVLESVKQSMI 170 (720)
Q Consensus 123 ---KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~------n~~A~~~L~~lk~~l~ 170 (720)
.+++++|.+|..+|+|++|+..|++++.+.+. -..+...++.+...++
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 34555555555555555555555555544321 1344444555544444
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.79 E-value=3.9e-08 Score=84.60 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN-------SS 157 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n-------~~ 157 (720)
.+..+.++|.+++.. |+|++|+..+.+++.++|.++.+++.+|.+|..+|++++|+..|++++.+.|++ ..
T Consensus 3 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 346889999999997 999999999999999999999999999999999999999999999999999887 88
Q ss_pred HHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 158 ALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 158 A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
++..++.+...+++...+. -.+...+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8899999988887544333 35555555
No 165
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.78 E-value=4.1e-08 Score=82.92 Aligned_cols=77 Identities=10% Similarity=0.192 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHH
Q 005002 90 SNMAGCYMQMGLGEFPRAINECNLALEVSSKYSK-ALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSAL--EVLESVK 166 (720)
Q Consensus 90 ~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~K-Ay~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~--~~L~~lk 166 (720)
+++|.+++.. |+|++|+..|+++++++|+++. +++.+|.+|..+|++++|+..|++++.++|++..++ ..+..+.
T Consensus 4 ~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 4 LKTIKELINQ--GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL 81 (99)
T ss_dssp HHHHHHHHHH--TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5789999997 9999999999999999999999 999999999999999999999999999999999887 4455544
Q ss_pred HH
Q 005002 167 QS 168 (720)
Q Consensus 167 ~~ 168 (720)
..
T Consensus 82 ~~ 83 (99)
T 2kc7_A 82 NF 83 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=6.4e-08 Score=102.43 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=119.7
Q ss_pred HHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhCCC
Q 005002 50 ELKEEGNKL----FQK---RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFP--RAINECNLALEVSSK 120 (720)
Q Consensus 50 ~lKeeGn~l----fk~---GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdye--eAI~d~~kALeLdP~ 120 (720)
.+..++..+ ... +++.+++..+.+++..+|++. .+|++|+.+..++ +.+. +++..|+++|+.+|.
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny----~aW~~R~~vl~~l--~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH----HVWSYRKWLVDTF--DLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHh--cccChHHHHHHHHHHHHhCCC
Confidence 455666666 555 899999999999999999999 6999999999998 8888 999999999999999
Q ss_pred CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhccChh---HHhhhcCCCCCCCC
Q 005002 121 YSKALLKRAQCYKALNR------LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGIDID---EKMKEFGLDSSGEA 191 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGr------yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~a~~---ek~~~L~~~~P~~P 191 (720)
|..|+..|+.++..+++ +++++.++.+++.++|+|..++..+..+....+....... .+...+....|..+
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 99999999999999998 9999999999999999999999999999988874322222 22111210013444
Q ss_pred cchhhHHHHHHHHh
Q 005002 192 HGALRFRKLVKEKV 205 (720)
Q Consensus 192 ~~~~~l~~i~k~k~ 205 (720)
.+..-++.++.+.+
T Consensus 259 ~al~~la~~~~~~~ 272 (306)
T 3dra_A 259 FALETLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccC
Confidence 44555566665433
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.78 E-value=3.8e-08 Score=87.05 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-----
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS----- 119 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP----- 119 (720)
.+..+...|..++..|+|++|+..|.+++.+.+... ...+.++.++|.+|..+ |++++|+..+.+++++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHccch
Confidence 356788899999999999999999999999876542 23567999999999998 999999999999998743
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 120 -KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 120 -~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
....+++.+|.+|..+|++++|+..+++++.+...
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 23578999999999999999999999999987543
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.76 E-value=5.7e-08 Score=84.94 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS---KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN---SSALEV 161 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~---KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n---~~A~~~ 161 (720)
.++++|.+++.. |+|++|+..+.++++.+|+++ .+++.+|.++..+|+|++|+..|++++.++|++ ..++..
T Consensus 4 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKN--GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 578899999997 999999999999999999988 899999999999999999999999999999999 888999
Q ss_pred HHHHHHHhhhhccCh--hHHhhhcC
Q 005002 162 LESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 162 L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
++.+...+++...+. -.+.....
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999887554333 34444444
No 169
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.76 E-value=2.7e-08 Score=102.43 Aligned_cols=127 Identities=15% Similarity=0.149 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--- 121 (720)
.+..+...|..++..|+|++|+..|.+++.+.|.... ..+.++.++|.+|..+ |++++|+..+.+++++.|..
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHhCcCc
Confidence 3456788999999999999999999999999876542 3567999999999998 99999999999999998765
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhhhccC
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~eka~a 175 (720)
..+++.+|.+|..+|++++|+..|++++.+.+.. ..++..++.+...+++...+
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7899999999999999999999999999986554 66778888888888754433
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.75 E-value=7.4e-09 Score=109.32 Aligned_cols=103 Identities=8% Similarity=-0.049 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+.+.|.++++.|+|++|+..|++||.++|++. .+|+++|.+|+.+ |+|++|+.++.++++++|++..++..++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP----KALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTT--TCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 678899999999999999999999999999988 6999999999998 9999999999999999999999999999
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 130 QCY-KALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 130 ~Ay-~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
.+. ...+.++.+...|.+++.+.|+++..
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 994 45677888999999999999988653
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=3.4e-08 Score=92.50 Aligned_cols=124 Identities=13% Similarity=-0.004 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCC-
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN--HIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV---SSK- 120 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~--~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL---dP~- 120 (720)
.+..+...|..++..|+|++|+..|.+++.+.... .+..+.++.++|.+|..+ |++++|+..+.+++++ .++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA--GNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCcc
Confidence 46688899999999999999999999999976543 224578999999999998 9999999999999998 443
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCH----HHHHHHHHHHHHhhhh
Q 005002 121 ---YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP--NNS----SALEVLESVKQSMIEK 172 (720)
Q Consensus 121 ---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP--~n~----~A~~~L~~lk~~l~ek 172 (720)
...+++.+|.++..+|++++|+..+++++.+.+ ++. .+...++.+...+++.
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 356799999999999999999999999997643 232 2346667777666543
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=7.4e-08 Score=85.36 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
..+..+|.+++.. |+|++|+..++++++++|++ ..+++.+|.+|..+|++++|+..|++++.++|++..++..++
T Consensus 29 ~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKC--GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 6899999999997 99999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCh--hHHhhhcCCCCCCCCc
Q 005002 164 SVKQSMIEKGIDI--DEKMKEFGLDSSGEAH 192 (720)
Q Consensus 164 ~lk~~l~eka~a~--~ek~~~L~~~~P~~P~ 192 (720)
.+...+++...+. ..+...+. |..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~ 134 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE---PKNKV 134 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC---SSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC---CCcHH
Confidence 9999887554333 35556666 55443
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1.8e-07 Score=93.01 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCCC
Q 005002 49 QELKEEGNKLFQ----KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQ----MGLGEFPRAINECNLALEVSSK 120 (720)
Q Consensus 49 ~~lKeeGn~lfk----~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~k----L~~gdyeeAI~d~~kALeLdP~ 120 (720)
..+...|..++. .+++++|+..|.+|+.+. ++ .+++++|.+|.. . +++++|+..+++|++++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~g~~~~--~~~~~A~~~~~~a~~~~-- 108 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS----NGCHLLGNLYYSGQGVS--QNTNKALQYYSKACDLK-- 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----HHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHhCCCCcc--cCHHHHHHHHHHHHHcC--
Confidence 457788999999 999999999999999875 34 588999999998 7 89999999999999874
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 121 YSKALLKRAQCYKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
++.+++.+|.+|.. .+++++|+..|++++.++ +..+...++.+...
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 88999999999999 999999999999999875 67788888888766
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.71 E-value=1.1e-08 Score=113.63 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
+..+...|..+++.|+|++|+..|++|++++|++. .+|+++|.+|..+ |+|++|+..+++|++++|++..+++.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~ 113 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMK 113 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45778999999999999999999999999999988 5999999999998 99999999999999999999999999
Q ss_pred HHHH--HHHcCCHHHHHHHHHH
Q 005002 128 RAQC--YKALNRLDFAFRDVNN 147 (720)
Q Consensus 128 rA~A--y~~LGryeeAl~d~ek 147 (720)
++.+ +..+|++++|+..+++
T Consensus 114 l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 114 YQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 9999 8899999999999883
No 175
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.67 E-value=5.3e-08 Score=96.29 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY---- 121 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~---- 121 (720)
+..+...|..++..|+|++|+..|.+++.+.+... ...+.++.++|.+|..+ |++++|+..+.+++++.|..
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhcchh
Confidence 45677889999999999999999999999887543 23567999999999998 99999999999999987765
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhhhc
Q 005002 122 --SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMIEKG 173 (720)
Q Consensus 122 --~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~eka 173 (720)
..+++.+|.+|..+|++++|+..|++++.+.|.. ..++..++.+...+++..
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 7899999999999999999999999999986543 446677777777776443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.66 E-value=3.5e-07 Score=98.04 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 005002 49 QELKEEGNKLFQKRD----------HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS 118 (720)
Q Consensus 49 ~~lKeeGn~lfk~Gd----------yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd 118 (720)
..+.-++..+...+. +.+++..+..+|..+|.+. .+|++|+.++..++...+.+++..|+++|+++
T Consensus 65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d 140 (331)
T 3dss_A 65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRCWLLSRLPEPNWARELELCARFLEAD 140 (331)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC
Confidence 455566666665554 7899999999999999999 69999999999982225999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh----------------hccChhHHhh
Q 005002 119 SKYSKALLKRAQCYKALNR-LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE----------------KGIDIDEKMK 181 (720)
Q Consensus 119 P~~~KAy~rrA~Ay~~LGr-yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e----------------ka~a~~ek~~ 181 (720)
|.|..|+..|+.++..+|. +++++.++.+++..+|.|..++..+..+...+.. .......+..
T Consensus 141 prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai 220 (331)
T 3dss_A 141 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 220 (331)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999 6999999999999999999999999999887721 1122224555
Q ss_pred hcCCCCCCCCcchhhHHHHHH
Q 005002 182 EFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 182 ~L~~~~P~~P~~~~~l~~i~k 202 (720)
.+. |.+++++.=++.++.
T Consensus 221 ~~~---P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 221 FTD---PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHS---TTCHHHHHHHHHHHH
T ss_pred HhC---CCCHHHHHHHHHHHH
Confidence 666 888887765555553
No 177
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.66 E-value=4.9e-08 Score=101.88 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--- 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--- 121 (720)
.+..+...|..++..|+|++|+..|.+++.+.|.... ..+.++.++|.+|+.+ |++++|+..+++++.+.|..
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL--GQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHcCCH
Confidence 3457788999999999999999999999999885432 3466999999999998 99999999999999998754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhhhccC
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN------SSALEVLESVKQSMIEKGID 175 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n------~~A~~~L~~lk~~l~eka~a 175 (720)
..+++.+|.+|..+|++++|+..|++++.+.+.. ..++..++.+...+++...+
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 7889999999999999999999999999986543 45777788888777754433
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.66 E-value=3e-07 Score=103.30 Aligned_cols=118 Identities=9% Similarity=0.072 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-
Q 005002 43 MFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL----PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV- 117 (720)
Q Consensus 43 ~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~----P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL- 117 (720)
..+..+..+.+.+..+..+|+|++|+..|.++|.+. ..++++.+..+.|+|.+|..+ |+|++|+..+.++|++
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~--g~~~eA~~~~~~aL~i~ 381 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL--QAYEEASHYARRMVDGY 381 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHH
Confidence 345678888889999999999999999999999764 345667899999999999997 9999999999999976
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHH
Q 005002 118 ----SSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSM-----EPNNSSALEVL 162 (720)
Q Consensus 118 ----dP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L-----dP~n~~A~~~L 162 (720)
-|++ ...|+++|.+|..+|+|++|+..|++||.+ -|+++.....+
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3444 567999999999999999999999999984 68887666544
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.65 E-value=1.6e-07 Score=82.56 Aligned_cols=80 Identities=11% Similarity=0.104 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
..+..+...|..++..|+|++|+..|++++.+.|+++ .+++++|.||+.+ |++++|+..+.++|.++|+++...
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ----ALRVFYAMVLYNL--GRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3466889999999999999999999999999999998 5999999999998 999999999999999999998765
Q ss_pred HHHHHH
Q 005002 126 LKRAQC 131 (720)
Q Consensus 126 ~rrA~A 131 (720)
.....+
T Consensus 99 ~~~~ai 104 (117)
T 3k9i_A 99 SYKQAI 104 (117)
T ss_dssp HTHHHH
T ss_pred HHHHHH
Confidence 433333
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.2e-07 Score=97.04 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVK 166 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk 166 (720)
..+.++|.+++.. |+|++|+..+++||.++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.++
T Consensus 5 ~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6899999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccChh--HHhhhcC
Q 005002 167 QSMIEKGIDID--EKMKEFG 184 (720)
Q Consensus 167 ~~l~eka~a~~--ek~~~L~ 184 (720)
..+++...+.. .+...+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 98885544332 4455555
No 181
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=1.4e-07 Score=101.90 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=99.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 005002 58 LFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG-EFPRAINECNLALEVSSKYSKALLKRAQCYKAL- 135 (720)
Q Consensus 58 lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g-dyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~L- 135 (720)
+...+..++|+..++++|.++|++. ++|+.|+.++..+ + .+++++..++.+|..+|++..+++.|+.++..+
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~y----taWn~R~~iL~~l--~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHY----TVWQYRFSLLTSL--NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhH----HHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 3344555778888888888888888 5888888888887 5 588888888888888888888888888888887
Q ss_pred C-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc----------cChhHHhhhcCCCCCCCCcchhhHHHHHH
Q 005002 136 N-RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG----------IDIDEKMKEFGLDSSGEAHGALRFRKLVK 202 (720)
Q Consensus 136 G-ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka----------~a~~ek~~~L~~~~P~~P~~~~~l~~i~k 202 (720)
+ ++++++..+.++|.++|.|..++.....+...++... .....+..... |.+-+++...+.++.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLRV 212 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 7 8888888888888888888888888877777666432 22224445555 555555554444443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.63 E-value=8.5e-08 Score=103.07 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALE----------------VSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe----------------LdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
.+..+.++|.+|++. ++|++|+..|++||+ ++|.+..+|+++|.||..+|+|++|+.+|+++
T Consensus 222 ~a~~~~~~g~~~~~~--g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKS--QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 367899999999997 999999999999999 78888999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCCCCCCcchhhHHHHHHHHhhh
Q 005002 149 LSMEPNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDSSGEAHGALRFRKLVKEKVKK 207 (720)
Q Consensus 149 L~LdP~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~P~~P~~~~~l~~i~k~k~kk 207 (720)
|.++|++..++..++.++..+++...+. -.+...+. |..+.....++.+....++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998554443 36677777 77666555566655554433
No 183
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=2.2e-07 Score=89.42 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCH
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG---EFPRAINECNLALEVS-S-KYSKALLKRAQCYKALNRL 138 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g---dyeeAI~d~~kALeLd-P-~~~KAy~rrA~Ay~~LGry 138 (720)
...+...|.+.+...|.+. .+.+++|.|+.+. . ++.++|..++..++.+ | ++..++|.+|.+|+.+|+|
T Consensus 14 l~~~~~~y~~e~~~~~~~~----~~~F~ya~~Lv~S--~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRS--KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHccCCCcH----HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 4567788999888878666 5999999999997 6 7779999999999999 7 6799999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhh
Q 005002 139 DFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 139 eeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ek 172 (720)
+.|+++++++|+++|+|..+......+...+.+.
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888543
No 184
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.62 E-value=4.2e-07 Score=100.59 Aligned_cols=120 Identities=9% Similarity=0.120 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-
Q 005002 43 MFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL----PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV- 117 (720)
Q Consensus 43 ~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~----P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL- 117 (720)
..+..+....+.+......|+|++|+..|.++|.+. ..++++.+..+.|+|.+|..+ |+|++|+..+.++|++
T Consensus 293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~--g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM--QDWEGALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHH
Confidence 345667777777887778899999999999999753 445667889999999999997 9999999999999976
Q ss_pred ----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHH
Q 005002 118 ----SSK---YSKALLKRAQCYKALNRLDFAFRDVNNVLSM-----EPNNSSALEVLES 164 (720)
Q Consensus 118 ----dP~---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L-----dP~n~~A~~~L~~ 164 (720)
-|+ -...|+++|.+|..+|+|++|+..|++||.+ -|+++........
T Consensus 371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 344 4567999999999999999999999999985 6888877665443
No 185
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=98.62 E-value=7.7e-08 Score=83.55 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=67.3
Q ss_pred cccceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCC-CCceeEEeeC-CCCCeeeecCchHHHHHHHhhcCCCceEEE
Q 005002 258 VVTKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKD-QEGDLVTITTTDELRFVEMLFNSQSFLRLY 335 (720)
Q Consensus 258 ~~~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkD-edGDlVtitsd~dl~~A~~~~~~~~~~rL~ 335 (720)
..+-+|||.|. |+..|.+|.+++|.+|+++|.++++- ....++.||| +.|.+| |.+++||..|.+.+. .+-++|+
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~-n~~LtL~ 79 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVK-NYCLTLW 79 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCB-TTEEEEE
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-ccChHHHHHHHHhcc-CCcEEEE
Confidence 34578999999 89999999999999999999999974 3559999999 577888 999999999999874 4459998
Q ss_pred EEe
Q 005002 336 IAE 338 (720)
Q Consensus 336 v~e 338 (720)
|..
T Consensus 80 C~~ 82 (83)
T 1oey_A 80 CEN 82 (83)
T ss_dssp ECC
T ss_pred Eec
Confidence 854
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.61 E-value=7.5e-07 Score=96.19 Aligned_cols=117 Identities=12% Similarity=-0.065 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHH
Q 005002 48 SQELKEEGNKLFQKR-DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG-EFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 48 A~~lKeeGn~lfk~G-dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g-dyeeAI~d~~kALeLdP~~~KAy 125 (720)
...+..+|..+...+ ++++++..++++|..+|++. .+|++|+.++..+ .+ ++.+++..|+++|+++|.|..++
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~wlL~~l-~~~~~~~EL~~~~k~L~~dpkNy~AW 162 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRLLLLDRI-SPQDPVSEIEYIHGSLLPDPKNYHTW 162 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHHH-CCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 345678899999999 59999999999999999999 6999999999986 35 89999999999999999999999
Q ss_pred HHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 126 LKRAQCYKALNRLD--------FAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 126 ~rrA~Ay~~LGrye--------eAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
+.|+.++..+|+++ +++..+++++.++|.|..|+.....+...+
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999998 999999999999999999999999887654
No 187
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=2.8e-07 Score=86.19 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--C
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL---LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS--K 120 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L---~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP--~ 120 (720)
..+..+...|..++..|+|++|+..|.+++.+ .++++...+.++.++|.+|..+ |++++|+..+.+++.+.+ .
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF--GDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhcc
Confidence 45667889999999999999999999999999 4433334578999999999998 999999999999997643 2
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 121 Y----SKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 121 ~----~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
+ ..++..+|.++..+|++++|+..+++++.+..
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2 34578999999999999999999999998743
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=8.7e-07 Score=94.98 Aligned_cols=150 Identities=9% Similarity=-0.010 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHH---HHcCCHH-HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCC----------HHHHHHHH
Q 005002 46 SMSQELKEEGNKL---FQKRDHE-GAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGE----------FPRAINEC 111 (720)
Q Consensus 46 k~A~~lKeeGn~l---fk~Gdye-eAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gd----------yeeAI~d~ 111 (720)
++...++..-+.. .+.|.|. +|+..+.++|.++|++. ++|+.|+.+...+ +. +.+++..+
T Consensus 24 ~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y----taWn~Rr~iL~~l--~~~~~~~~~~~~l~~EL~~~ 97 (331)
T 3dss_A 24 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHL--ETEKSPEESAALVKAELGFL 97 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHh--cccccchhhhHHHHHHHHHH
Confidence 3444555444443 4678886 79999999999999999 6999999999887 44 78999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh---hccChhHHhhhcCCC
Q 005002 112 NLALEVSSKYSKALLKRAQCYKALNR--LDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE---KGIDIDEKMKEFGLD 186 (720)
Q Consensus 112 ~kALeLdP~~~KAy~rrA~Ay~~LGr--yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e---ka~a~~ek~~~L~~~ 186 (720)
+.+|..+|.+..+++.|+.++..+++ +++++..+.+++.++|.|..++.....+...++. .......+.....
T Consensus 98 ~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-- 175 (331)
T 3dss_A 98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-- 175 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--
Confidence 99999999999999999999999995 9999999999999999999999999999888764 2233346667777
Q ss_pred CCCCCcchhhHHHHHHHH
Q 005002 187 SSGEAHGALRFRKLVKEK 204 (720)
Q Consensus 187 ~P~~P~~~~~l~~i~k~k 204 (720)
|.+.+++...+.++...
T Consensus 176 -p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 176 -FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp -SCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 88888888887777654
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.55 E-value=3.6e-07 Score=78.85 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK--YSKAL 125 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~--~~KAy 125 (720)
+..+...|..++..|+|++|+..|+++++++|+++ .+|.++|.||..+ |++++|+..+.+++++.|. +..+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERL--DRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 34788999999999999999999999999999999 5999999999998 9999999999999999774 44444
Q ss_pred HHHHHHHHHc
Q 005002 126 LKRAQCYKAL 135 (720)
Q Consensus 126 ~rrA~Ay~~L 135 (720)
..+...+...
T Consensus 81 ~~l~~~l~~~ 90 (100)
T 3ma5_A 81 SELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4444444433
No 190
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=4.3e-07 Score=88.80 Aligned_cols=144 Identities=10% Similarity=0.003 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG-LGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~-~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
+..+...|..++..+++++|+..|++|+.. .++ .+++++|.+|..-+ ..++++|+..+.+|++ +.++.+++
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~ 89 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEI 89 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 567888999999999999999999999875 445 69999999998610 1189999999999965 67999999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH----hh--hhccChhHHhhhcCCCCCCCCcch
Q 005002 127 KRAQCYKA----LNRLDFAFRDVNNVLSMEP--NNSSALEVLESVKQS----MI--EKGIDIDEKMKEFGLDSSGEAHGA 194 (720)
Q Consensus 127 rrA~Ay~~----LGryeeAl~d~ekAL~LdP--~n~~A~~~L~~lk~~----l~--eka~a~~ek~~~L~~~~P~~P~~~ 194 (720)
.+|.+|.. .+++++|+..|++++...| +++.+...|+.+... .. .++..+-.+...++ ..+.+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~a~ 165 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS----RTGYAE 165 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS----CTTHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC----CCHHHH
Confidence 99999998 9999999999999999988 458999999999876 22 22222334444443 345556
Q ss_pred hhHHHHHHH
Q 005002 195 LRFRKLVKE 203 (720)
Q Consensus 195 ~~l~~i~k~ 203 (720)
..++.++..
T Consensus 166 ~~Lg~~y~~ 174 (212)
T 3rjv_A 166 YWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 667777644
No 191
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=3.8e-07 Score=89.19 Aligned_cols=111 Identities=15% Similarity=-0.029 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCC
Q 005002 48 SQELKEEGNKLFQKR----DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQ----MGLGEFPRAINECNLALEVSS 119 (720)
Q Consensus 48 A~~lKeeGn~lfk~G----dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~k----L~~gdyeeAI~d~~kALeLdP 119 (720)
+..+...|..++. + ++++|+..|.+|+. +.++ .+++++|.+|.. . +++.+|+..+.+|++..|
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~----~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSK----SGEIVLARVLVNRQAGA--TDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHTCGGGSS--CCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCCc--cCHHHHHHHHHHHHHcCC
Confidence 3467788888887 7 99999999999975 4555 599999999986 4 899999999999999998
Q ss_pred --CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 120 --KYSKALLKRAQCYKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 120 --~~~KAy~rrA~Ay~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
.++.+++.+|.+|.. .+++++|+..|++++.+ |+++.+...|+.++..
T Consensus 121 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 121 SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 469999999999999 89999999999999999 7888899999998764
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.52 E-value=1.1e-06 Score=96.83 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV---- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL---- 117 (720)
..+..+...-..+..+|+|++|+..|++++.+ .+.+++..+..+.|+|.+|..+ |+|++|+..|.++|.+
T Consensus 285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~--g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL--GLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhHHHH
Confidence 44566667777888999999999999999965 4456667889999999999998 9999999999999976
Q ss_pred -CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHH
Q 005002 118 -SSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLSM-----EPNNSSALEVLESVK 166 (720)
Q Consensus 118 -dP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L-----dP~n~~A~~~L~~lk 166 (720)
-|++ ...|+++|.+|..+|+|++|+..|++|+.+ -|+++.....+..+.
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444 467999999999999999999999999985 688877766544433
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.52 E-value=9.2e-07 Score=85.52 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHhhhhhHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005002 430 EAQELFEMAADNFQEMAAL------AVFNWGNIHLSRARKRIFFPEDGLRESILAQVTVAHEWAKKEYAMAGMRYQEALK 503 (720)
Q Consensus 430 ~a~~lf~~a~~kfqe~aa~------a~fnwgnvhm~~ark~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~a~~kye~a~~ 503 (720)
+=...|+.|...|+.+..+ +++|||++++..+|-.- ...+.+.|.+|...|++||+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~------------------g~~al~~~~eAi~~le~AL~ 74 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS------------------ISDAKQMIQEAITKFEEALL 74 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch------------------hhhhHhHHHHHHHHHHHHHH
Confidence 4446788999999998887 99999999999988664 11244579999999999999
Q ss_pred cCchhhHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 005002 504 IKQDFYEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQM 562 (720)
Q Consensus 504 ikpdf~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~ 562 (720)
|.|++.+++..||...+.+++| .+...+....|+.|...|++|+++
T Consensus 75 ldP~~~~A~~~LG~ay~~lg~l-------------~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 75 IDPKKDEAVWCIGNAYTSFAFL-------------TPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHhccc-------------CcchhhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999887 223347788888999999988884
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=6.2e-07 Score=94.22 Aligned_cols=109 Identities=9% Similarity=-0.083 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CC-CHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--SK-YSKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--P~-~~KAy~ 126 (720)
.....|..+++.++|++|+..|+.++...+.. ....+++++|.++..+ |++++|+..|.+++.-. |. .+.+++
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--~~~~a~~~LG~al~~L--G~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--LAGAAGVAHGVAAANL--ALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH--HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc--cHHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 55778889999999999999998776642111 1135889999999998 99999999999998654 65 678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
++|.|+..+|+.++|...|++++..+|+ ..+...|.
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999999999999999999999998 77665553
No 195
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.47 E-value=1e-06 Score=97.10 Aligned_cols=131 Identities=10% Similarity=-0.051 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKR 128 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rr 128 (720)
..+...|..+...|++++|...|++++.+.|.++. .+|.+++.++.+. |++++|+..+.+|++..|.....++..
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~--~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA--EGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 34566778888999999999999999999988752 5899999999887 899999999999999999888888777
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc--cChhHHhhhcC
Q 005002 129 AQC-YKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG--IDIDEKMKEFG 184 (720)
Q Consensus 129 A~A-y~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka--~a~~ek~~~L~ 184 (720)
+.. +..+|++++|...|+++++.+|+++.++..+..+...+++.. ...-++.....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 655 456999999999999999999999999988888877666433 23335555554
No 196
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=1e-06 Score=77.47 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH---IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~---~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
+..+...|..+|..++|..|+..|..|+...+... .....++.++|.||.++ |+++.|+..+++|+.++|++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~--g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--GDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHH
Confidence 34677888888888888888888888887753321 13456677777777776 77777777777777777777666
Q ss_pred HHHHH
Q 005002 125 LLKRA 129 (720)
Q Consensus 125 y~rrA 129 (720)
+.+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 66654
No 197
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.45 E-value=1.5e-06 Score=90.19 Aligned_cols=162 Identities=9% Similarity=0.006 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY--- 121 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~--- 121 (720)
-.+..+...|..++..|++++|+..|.+++...|.... ..+.+++++|.+|... |++++|+..+.+++.+.|..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhcCcH
Confidence 45667788899999999999999999999999887653 4778999999999987 99999999999999886532
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhhhccCh--hHHhhhcCCCC-
Q 005002 122 ---SKALLKRAQCYKALNRLDFAFRDVNNVLSME--------PNNSSALEVLESVKQSMIEKGIDI--DEKMKEFGLDS- 187 (720)
Q Consensus 122 ---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld--------P~n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~~~~- 187 (720)
..+++.+|.++..+|++++|+..|++++.+. |....++..++.+....++...+. ..+...+....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 2458899999999999999999999999875 334556677888877776443332 24444443110
Q ss_pred C-CCCcchhhHHHHHHHHhhhhh
Q 005002 188 S-GEAHGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 188 P-~~P~~~~~l~~i~k~k~kkkK 209 (720)
+ ........++.+....|+..+
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHH
Confidence 1 111233456677777777644
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.40 E-value=1.4e-06 Score=75.76 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK--YSKALL 126 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~--~~KAy~ 126 (720)
..+...|..++..|+|++|+..|.+++.++|.+. .+|+++|.||..+ |++++|+..+.++++++|. +..++.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS----VAWKWLGKTLQGQ--GDRAGARQAWESGLAAAQSRGDQQVVK 93 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccccHHHHH
Confidence 4678899999999999999999999999999988 5999999999998 9999999999999999884 455555
Q ss_pred HHHHHHHHcC
Q 005002 127 KRAQCYKALN 136 (720)
Q Consensus 127 rrA~Ay~~LG 136 (720)
.+...+..++
T Consensus 94 ~l~~~l~~l~ 103 (115)
T 2kat_A 94 ELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555554444
No 199
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.38 E-value=1.5e-06 Score=95.85 Aligned_cols=148 Identities=14% Similarity=0.017 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 49 QELKEEGNKLFQ-------KRDHE-------GAMLKYEKALK-LLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNL 113 (720)
Q Consensus 49 ~~lKeeGn~lfk-------~Gdye-------eAl~~Y~kAL~-L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~k 113 (720)
..+...|..+.. .|+++ +|+..|++|+. +.|++. .+|.+++.++... |++++|+..|++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~----~l~~~~~~~~~~~--g~~~~A~~~~~~ 346 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM----LLYFAYADYEESR--MKYEKVHSIYNR 346 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH----HHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhc--CCHHHHHHHHHH
Confidence 345566777765 79987 99999999997 899888 5999999999997 999999999999
Q ss_pred HHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-Hhhh--hccChhHHhhhcCCCCCC
Q 005002 114 ALEVSSKYS-KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ-SMIE--KGIDIDEKMKEFGLDSSG 189 (720)
Q Consensus 114 ALeLdP~~~-KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~-~l~e--ka~a~~ek~~~L~~~~P~ 189 (720)
+|+++|.++ .+|+.+|.++...|++++|+..|++|+...|.+.........+.. ..++ .+...-++..... |.
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~ 423 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GD 423 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TT
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CC
Confidence 999999985 699999999999999999999999999999887665544443321 2222 2222335555555 66
Q ss_pred CCcchhhHHHHHHHHh
Q 005002 190 EAHGALRFRKLVKEKV 205 (720)
Q Consensus 190 ~P~~~~~l~~i~k~k~ 205 (720)
.+.....++......|
T Consensus 424 ~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLN 439 (530)
T ss_dssp CHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHhCC
Confidence 6666655555554433
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.33 E-value=3.1e-06 Score=73.98 Aligned_cols=76 Identities=13% Similarity=-0.109 Sum_probs=66.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 78 LPKNHIDVAYLRSNMAGCYMQMG-LGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 78 ~P~~~~d~a~l~~NrAa~y~kL~-~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
+|+++ .++..+|.+++..+ .....+|...+.+||.++|+++.+++.+|..++..|+|++|+..+++++..+|.++
T Consensus 2 ~p~~~----~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTA----TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCH----HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCH----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 46666 58999999987641 12279999999999999999999999999999999999999999999999999854
Q ss_pred H
Q 005002 157 S 157 (720)
Q Consensus 157 ~ 157 (720)
.
T Consensus 78 ~ 78 (93)
T 3bee_A 78 D 78 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 201
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.31 E-value=6.3e-06 Score=72.36 Aligned_cols=82 Identities=13% Similarity=-0.002 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLALEVS-------SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSAL 159 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-------P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~ 159 (720)
.-++.+|..++.. ++|..|+..+..|++.. +..+..+..+|.||..+|+++.|+..+++++.++|++..+.
T Consensus 6 ~dc~~lG~~~~~~--~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 6 EDCFELGKVAYTE--ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHc--cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4567899999997 99999999999999863 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 005002 160 EVLESVKQSMI 170 (720)
Q Consensus 160 ~~L~~lk~~l~ 170 (720)
.++..+...+.
T Consensus 84 ~n~~~~~~~~~ 94 (104)
T 2v5f_A 84 GNLKYFEYIMA 94 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 88887666553
No 202
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.31 E-value=3.5e-06 Score=87.40 Aligned_cols=123 Identities=12% Similarity=-0.077 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYS-----KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS--- 156 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~-----KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~--- 156 (720)
.+.++..+|.+++.. |++++|+..+.+++...|... .+++.+|.++...|++++|+..+++++.+.|...
T Consensus 13 ~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 13 HAEFNALRAQVAIND--GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 456888899999987 999999999999999987542 3789999999999999999999999999866432
Q ss_pred ---HHHHHHHHHHHHhhhhccChh--HHhhhcCCC--CCCCC---cchhhHHHHHHHHhhhhh
Q 005002 157 ---SALEVLESVKQSMIEKGIDID--EKMKEFGLD--SSGEA---HGALRFRKLVKEKVKKKK 209 (720)
Q Consensus 157 ---~A~~~L~~lk~~l~eka~a~~--ek~~~L~~~--~P~~P---~~~~~l~~i~k~k~kkkK 209 (720)
.+...++.+....++...+.. .+...+... .+..| .....++.++-..++...
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 235667777776664433322 222222100 01112 233456777777777654
No 203
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=98.25 E-value=1.4e-06 Score=75.40 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=56.4
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCC-CCCeeeecCchHHHHHHHh
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQ-EGDLVTITTTDELRFVEML 325 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDe-dGDlVtitsd~dl~~A~~~ 325 (720)
+-.||+.|.|||..+.||.+++|.+|.+++..+.......++.|+|+ .|+ .|.||+||..|+.-
T Consensus 12 ~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde~~g~--~i~sD~dl~~aiqr 76 (85)
T 1ip9_A 12 TTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGE--EIKTDSQVSNIIQA 76 (85)
T ss_dssp CEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSSSCCS--CCCSHHHHHHHHHT
T ss_pred ceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCCCCCC--cccCHHHHHHHHHh
Confidence 44699999999999999999999999999999997655567777766 888 99999999999884
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=1.3e-05 Score=73.76 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=81.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG--LGEFPRAINECNLALEVSSKYSKALLKRAQC 131 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~--~gdyeeAI~d~~kALeLdP~~~KAy~rrA~A 131 (720)
.|..++..+.+++|+..|++|.+. .++ .+++++|.+|..-. .+++.+|+..+++|.+. .++.+++++|.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~----~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 102 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSG----NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK 102 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCH----HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 677777778888899999999986 444 58899999998710 37999999999999886 689999999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 005002 132 YKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLE 163 (720)
Q Consensus 132 y~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~ 163 (720)
|.. .+++++|+..|+++..+ +++.+...|.
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999 89999999999999887 5666655554
No 205
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=2.1e-06 Score=90.24 Aligned_cols=129 Identities=12% Similarity=-0.036 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-C-HHHHH
Q 005002 49 QELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK-Y-SKALL 126 (720)
Q Consensus 49 ~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~-~-~KAy~ 126 (720)
......+..+...|+|++|...|..++...|.+. .++++|.++++. ++|.+|+..+..++...+. + ..+++
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-----~~~~~a~l~~~~--~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-----VAWMKAVVYGAA--ERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-----HHHHHHHHHHHT--TCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-----HHHHHHHHHHHc--CCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 3455678889999999999999999887666432 889999999998 9999999999988776422 2 45899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHhhhhccCh--hHHhhhcC
Q 005002 127 KRAQCYKALNRLDFAFRDVNNVLSME--PN-NSSALEVLESVKQSMIEKGIDI--DEKMKEFG 184 (720)
Q Consensus 127 rrA~Ay~~LGryeeAl~d~ekAL~Ld--P~-n~~A~~~L~~lk~~l~eka~a~--~ek~~~L~ 184 (720)
.+|.++..+|++++|+..|++++... |. ...++..++.+...+++...+. -++.....
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999654 66 6679999999999998554333 34455555
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=8.6e-06 Score=91.45 Aligned_cols=103 Identities=10% Similarity=-0.074 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV---- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL---- 117 (720)
..+..+.+.|..|..+|+|++|+.+|.++|.+ .+.++++.+..++|+|.+|..+ |+|++|+..+.+||++
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~--G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA--GHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999954 5677888999999999999997 9999999999999976
Q ss_pred -CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 118 -SSKY---SKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 118 -dP~~---~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
-|++ ...+-.++.++..++.|.+|...|.++..
T Consensus 427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 45678899999999999999999988753
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.15 E-value=1.5e-05 Score=86.61 Aligned_cols=132 Identities=13% Similarity=0.003 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcC-CC----CHHHHHHHHH---HHHH
Q 005002 48 SQELKEEGNKLFQKRD---HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMG-LG----EFPRAINECN---LALE 116 (720)
Q Consensus 48 A~~lKeeGn~lfk~Gd---yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~-~g----dyeeAI~d~~---kALe 116 (720)
|-.+.-+|..++..++ +.+|+.+|++|++++|+++ .+|..++.||+.+. .+ ....++.... .++.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a----~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT----YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 4466677888777655 5899999999999999998 47777777775320 00 0111111111 2235
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhc--cChhHHhhhcC
Q 005002 117 VSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKG--IDIDEKMKEFG 184 (720)
Q Consensus 117 LdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka--~a~~ek~~~L~ 184 (720)
++|..+.+|..+|.++...|++++|+..+++|+.++|+ ..++..++.++...|+.. ...-.++..+.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56777777777777777777777777777777777753 556667777777666433 33335666666
No 208
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.06 E-value=2.2e-05 Score=85.52 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCC
Q 005002 48 SQELKEEGNKLFQK-----RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLG---EFPRAINECNLALEVSS 119 (720)
Q Consensus 48 A~~lKeeGn~lfk~-----GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~g---dyeeAI~d~~kALeLdP 119 (720)
...+...|..+... +++++|+..|.+|++.. ++ .+++++|.+|... | ++++|+..|.+|++.
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~y~~~--g~~~~~~~A~~~~~~a~~~-- 360 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DA----TAQANLGAIYFRL--GSEEEHKKAVEWFRKAAAK-- 360 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CH----HHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CH----HHHHHHHHHHHhC--CCcccHHHHHHHHHHHHHC--
Confidence 55777889998887 89999999999999863 33 5889999999985 5 899999999999987
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 120 KYSKALLKRAQCYKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 120 ~~~KAy~rrA~Ay~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
.++.+++.+|.+|.. .+++++|+..|++++.. +++.++..|+.+...
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 679999999999999 89999999999999875 578899999998876
No 209
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.04 E-value=6.8e-05 Score=81.69 Aligned_cols=109 Identities=14% Similarity=0.057 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCC
Q 005002 48 SQELKEEGNKLFQ----KRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQ----MGLGEFPRAINECNLALEVSS 119 (720)
Q Consensus 48 A~~lKeeGn~lfk----~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~k----L~~gdyeeAI~d~~kALeLdP 119 (720)
+..+...|..++. .+++++|+..|++|++. .++ .+++++|.+|.. . +++++|+..+.+|++.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~-- 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT----PAEYVLGLRYMNGEGVP--QDYAQAVIWYKKAALK-- 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHC--
Confidence 5677889999998 99999999999999986 444 599999999998 5 8999999999999885
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 120 KYSKALLKRAQCYKA----LNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 120 ~~~KAy~rrA~Ay~~----LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
.++.+++.+|.+|.. .+++++|+..|++++.. +++.++..|+.+...
T Consensus 109 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 109 GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFE 159 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 589999999999999 89999999999999865 689999999988765
No 210
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.02 E-value=3.6e-05 Score=71.78 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcC
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPR---AINECNLALEVS-S-KYSKALLKRAQCYKALN 136 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyee---AI~d~~kALeLd-P-~~~KAy~rrA~Ay~~LG 136 (720)
.....+...|.+++...+.+. .+.+++|.|+.+. .+... +|..+...+.-+ | ..-.++|.+|.+++.+|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~----~~~F~yAw~Lv~S--~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRT--RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTS--SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 345667778888888777555 5889999999886 54544 899999988877 5 57789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Q 005002 137 RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIE 171 (720)
Q Consensus 137 ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~e 171 (720)
+|+.|+.+++.+|.++|+|..|......+..++..
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887754
No 211
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=6.2e-05 Score=79.08 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS----- 118 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd----- 118 (720)
.....+...|..|+..|+|++|+..|.+++.+.+.... ....++.+++.++... |+++.|+..|..++...
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 130 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVP--DSLDDQIFVCEKSIEFAKREKR 130 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCC--SCHHHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhCc
Confidence 45567899999999999999999999999998876543 1345677788887765 99999999999998764
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhhh
Q 005002 119 -SKYSKALLKRAQCYKALNRLDFAFRDVNNVLSME------PNNSSALEVLESVKQSMIEK 172 (720)
Q Consensus 119 -P~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~Ld------P~n~~A~~~L~~lk~~l~ek 172 (720)
+...+++.++|.+|..+|+|++|+..++.++... |....+...+.++...+++.
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH
Confidence 3457899999999999999999999999998752 22355667777777776643
No 212
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.95 E-value=5.7e-05 Score=82.56 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=100.8
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 52 KEEGNKLFQK----RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYM-QMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 52 KeeGn~lfk~----GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~-kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
...|..+... +++++|+..|++|. |.++ .+++++|.+|+ ..+.+++.+|+..+.+|++. .++.+++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~----~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~ 287 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYP----ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAEL 287 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST----HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 5677777654 79999999999998 7777 59999999955 11259999999999999975 5899999
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh------hhccChhHHhhhcCCCCCCCCcchh
Q 005002 127 KRAQCYKALN-----RLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI------EKGIDIDEKMKEFGLDSSGEAHGAL 195 (720)
Q Consensus 127 rrA~Ay~~LG-----ryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~------eka~a~~ek~~~L~~~~P~~P~~~~ 195 (720)
++|.+|. .| ++++|+..|+++. |+++.+...|+.++..=. .++..+..+... +..+....
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~~~A~~ 358 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----NGQNSADF 358 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----TTCTTHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----hChHHHHH
Confidence 9999998 66 9999999999998 999999999998876510 111122233322 34556666
Q ss_pred hHHHHHH
Q 005002 196 RFRKLVK 202 (720)
Q Consensus 196 ~l~~i~k 202 (720)
.++.++.
T Consensus 359 ~Lg~~y~ 365 (452)
T 3e4b_A 359 AIAQLFS 365 (452)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6776664
No 213
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=97.89 E-value=2.9e-05 Score=68.06 Aligned_cols=64 Identities=19% Similarity=0.423 Sum_probs=56.3
Q ss_pred eeeeecCceEEEec-cCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhh
Q 005002 263 VKLVFGDDIRWAQL-PVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLF 326 (720)
Q Consensus 263 ~K~~~g~DiR~~~~-~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~ 326 (720)
||..=|+|+-|.+- |..++|.+|++.|.++.|....-..-|.|||||.||+-||+||+--+++.
T Consensus 19 Ik~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~TAFeYEDE~gDRITVRSDeE~kAMlsyy 83 (106)
T 2npt_A 19 IKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYY 83 (106)
T ss_dssp EEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred EECCCCCccccccCCcccccHHHHHHHHHHhCccceeeeeeeccccCCeeEEcchHHHHHHHHHH
Confidence 77777889999886 68899999999999999999999999999999999999999998776653
No 214
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.88 E-value=6.1e-05 Score=82.37 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005002 51 LKEEGNKLFQKR---DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM--GLGEFPRAINECNLALEVSSKYSKAL 125 (720)
Q Consensus 51 lKeeGn~lfk~G---dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL--~~gdyeeAI~d~~kALeLdP~~~KAy 125 (720)
+...|..+...| ++.+|+..|.+|+...|... ..++++|.+|... ..+++++|+..|.++. |.++.++
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a----~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA----QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 345555666666 66666666666666655554 3455666665431 1236666666666665 6666666
Q ss_pred HHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 126 LKRAQC-Y--KALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 126 ~rrA~A-y--~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
+++|.+ | ...+++++|+..|++++. ++++.++..|+.+..
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence 666666 3 345666666666666653 345666666665554
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00015 Score=66.58 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 005002 62 RDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKA----LNR 137 (720)
Q Consensus 62 GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~----LGr 137 (720)
+++++|+..|.+|.+..... +. +|.+|... ..+++|+..+.+|.+. .++.+++++|.+|.. .++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~------a~--lg~~y~~g--~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF------GC--LSLVSNSQ--INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT------HH--HHHHTCTT--SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHcCCCHh------hh--HHHHHHcC--CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc
Confidence 57899999999999876432 33 99999886 7899999999999997 789999999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 138 LDFAFRDVNNVLSMEPNNSSALEVLESVKQS 168 (720)
Q Consensus 138 yeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~ 168 (720)
+++|+..|+++... +++.+...|+.+...
T Consensus 77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 77 LRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 99999999999987 789999999998875
No 216
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.76 E-value=9.7e-05 Score=78.56 Aligned_cols=63 Identities=6% Similarity=-0.152 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLP--KNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS 119 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P--~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP 119 (720)
+...|..++..|++++|+..|.++|...| .+. .++.-++.+|+++ |+.+.|...+.+..+.+|
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l----ea~~l~vqi~L~~--~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT----ELLLLAIEVALLN--NNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCc
Confidence 34566777777777777777777766665 444 2444555555554 555555555555555554
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.73 E-value=0.00012 Score=77.37 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCH
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGL---GEFPRAINECNLALEVSSKY-SKALLKRAQCYKA-LNRL 138 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~---gdyeeAI~d~~kALeLdP~~-~KAy~rrA~Ay~~-LGry 138 (720)
...|...+++||+++|+... ..+|..+|..|.++.. |+.++|..++++||+++|+. ...++..|.-|.. .|++
T Consensus 179 l~~A~a~lerAleLDP~~~~--GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQE--GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHH--HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCccc--CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 47899999999999999321 2699999999999532 89999999999999999975 9999999999988 5999
Q ss_pred HHHHHHHHHHHHcCCC
Q 005002 139 DFAFRDVNNVLSMEPN 154 (720)
Q Consensus 139 eeAl~d~ekAL~LdP~ 154 (720)
++|...+++|+..+|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999998776
No 218
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=8.9e-05 Score=77.89 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCCHHH
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNH--IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV------SSKYSKA 124 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~--~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL------dP~~~KA 124 (720)
..|..+...|+++.|+..|.+++...+... ..++.++.++|.+|... |+|.+|+..+..++.. .|....+
T Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 177 (434)
T 4b4t_Q 100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK--KQYKDSLALINDLLREFKKLDDKPSLVDV 177 (434)
T ss_dssp HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc--cChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 456666678999999999999998876433 24678999999999998 9999999999999876 2345678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
++..|.+|..+|+|+.|...|++++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 178 HLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999987543
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.63 E-value=0.00022 Score=88.49 Aligned_cols=106 Identities=13% Similarity=0.237 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS---------- 119 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP---------- 119 (720)
.+...|+.++..|+|++|+..|.+| ..|..+|.||.++ |+|+.|++.+.+|....+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkL--ge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHL--GEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHh--CCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 5678999999999999999999996 2788999999998 999999999999965544
Q ss_pred ---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 120 ---------------KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 120 ---------------~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.++.-+..++..|...|.|++|+..++.+|.++|.+......|..+...-
T Consensus 1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 25556778888999999999999999999999999999999888887754
No 220
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.60 E-value=0.00014 Score=80.85 Aligned_cols=104 Identities=14% Similarity=0.254 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS---------- 119 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP---------- 119 (720)
.+...|+.++..|+|++|+.+|.++ . .|.++|.|+.++ |+|+.|++.+.+|. +|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------~-----n~~~LA~~L~~L--g~yq~AVea~~KA~--~~~~Wk~v~~aC 187 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------S-----NFGRLASTLVHL--GEYQAAVDGARKAN--STRTWKEVCFAC 187 (449)
T ss_dssp -------------CTTTHHHHHHHT-------T-----CHHHHHHHHHTT--TCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------h-----hHHHHHHHHHHh--ccHHHHHHHHHHcC--CchhHHHHHHHH
Confidence 5566677777777777777777655 1 456667777766 67777777766662 22
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 120 -----------------KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 120 -----------------~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.++.-+..+..+|...|++++|+..++.+|.+++.+..+...|..+...-
T Consensus 188 v~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 23333445567899999999999999999999999999999998887644
No 221
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.57 E-value=0.0003 Score=62.55 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=65.3
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHh---hcCCCceEEEE
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEML---FNSQSFLRLYI 336 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~---~~~~~~~rL~v 336 (720)
...||+-|+.+.|++++|..++|++|..+|...|. ..+.|+|.|-| =+|.|+|.+||--|+.. +....++|+++
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~n~E-llIpl~sQeDLDkaIellDrss~~kSLrIlL 84 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTNNE-LVIPLTTQDDLDKAVELLDRSIHMKSLKILL 84 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS--SCEEEEECSSS-SCEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC--CeeeEEEecce-EEEeccCHHHHHHHHHHHccCCcccceEEEE
Confidence 45599999999999999999999999999999994 58999999544 68999999999999665 34566789877
Q ss_pred Ee
Q 005002 337 AE 338 (720)
Q Consensus 337 ~e 338 (720)
+.
T Consensus 85 ~~ 86 (103)
T 2cu1_A 85 VI 86 (103)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=0.00038 Score=60.62 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 005002 49 QELKEEGNKLFQKRD---HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 49 ~~lKeeGn~lfk~Gd---yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~ 121 (720)
..+...|..++..++ ..+|...+.+||.++|++. .++..+|..+++. |+|.+|+..+.++|+.+|..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~----rA~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE----AALSLIANDHFIS--FRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 467778888876665 7999999999999999999 6999999999997 99999999999999999973
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.00038 Score=76.63 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV---- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL---- 117 (720)
..+..+.+.|..|..+|+|++|+.+|.++|.+ .|.++++.+..++|+|.+|..+ |+|++|+..+.+|+++
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~--g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ--GMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999954 6788889999999999999997 9999999999999976
Q ss_pred -CCCCH---HHHHHHHHHHHHc
Q 005002 118 -SSKYS---KALLKRAQCYKAL 135 (720)
Q Consensus 118 -dP~~~---KAy~rrA~Ay~~L 135 (720)
-|+++ ..+.+++.|+..+
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHH
Confidence 45654 4556677766544
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.40 E-value=0.00068 Score=63.76 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMG-LGEFPRAINECNLALEVSSK-YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 87 ~l~~NrAa~y~kL~-~gdyeeAI~d~~kALeLdP~-~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
..-+|.|.|+.+.. ..+..++|..+...++.+|. ....+|.+|.+++.+|+|+.|+++++.+|.++|+|..|......
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 57778888888762 12455799999999999984 57899999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 005002 165 VKQSMIE 171 (720)
Q Consensus 165 lk~~l~e 171 (720)
+..++..
T Consensus 121 Ie~ki~k 127 (134)
T 3o48_A 121 VEDKIQK 127 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888753
No 225
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.40 E-value=0.00066 Score=72.16 Aligned_cols=103 Identities=13% Similarity=0.012 Sum_probs=83.5
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----------CCC
Q 005002 53 EEGNKLFQKR--DHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV----------SSK 120 (720)
Q Consensus 53 eeGn~lfk~G--dyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL----------dP~ 120 (720)
.+|...+..| ++.+|+..|+++....|+.. ...++.| |++++ |+|++|...++.++++ +|+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~--~~~lLln---~~~~~--g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWK--TQLGLLN---LHLQQ--RNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH---HHHHH--TCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--cHHHHHH---HHHHc--CCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 3454455555 99999999999988777511 0135555 89998 9999999999988876 599
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
++.++.++..+...+|+ +|.+.+.++..++|+++-+......
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k 295 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI 295 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999998 9999999999999999987664443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.39 E-value=0.00046 Score=66.30 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 49 QELKEEGNKLFQKR---DHEGAMLKYEKALKLL-PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 49 ~~lKeeGn~lfk~G---dyeeAl~~Y~kAL~L~-P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
...++.|..+.+.+ ++.+|+..++..++.+ |.. ...+++++|..|+++ ++|.+|+.+|+++|+++|+|..|
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl--~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHH
Confidence 46678889999988 7779999999999987 532 236999999999998 99999999999999999999988
Q ss_pred HHHHHHH
Q 005002 125 LLKRAQC 131 (720)
Q Consensus 125 y~rrA~A 131 (720)
...+-.+
T Consensus 108 ~~Lk~~i 114 (152)
T 1pc2_A 108 KELERLI 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665444
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.35 E-value=0.00093 Score=63.57 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMG-LGEFPRAINECNLALEVSS-KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 87 ~l~~NrAa~y~kL~-~gdyeeAI~d~~kALeLdP-~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
...+|.|.|+.+.. ..+..++|..++..+.-+| ..-..+|.+|.+++++|+|+.|+++++.+|+++|+|..+......
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 47788888888761 2244579999999999888 467799999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 005002 165 VKQSMIEK 172 (720)
Q Consensus 165 lk~~l~ek 172 (720)
+...+...
T Consensus 120 Ie~~i~kd 127 (144)
T 1y8m_A 120 VEDKIQKE 127 (144)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 98888543
No 228
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.25 E-value=0.00097 Score=73.68 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV---- 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL---- 117 (720)
..+..+.+.|..|..+|+|++|+.+|.++|.+ .+.++++.+..++|+|.+|..+ |+|++|+..+.+||++
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q--g~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL--ENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999954 5777889999999999999997 9999999999999976
Q ss_pred -CCCCHH
Q 005002 118 -SSKYSK 123 (720)
Q Consensus 118 -dP~~~K 123 (720)
-|+++.
T Consensus 416 lG~~Hp~ 422 (433)
T 3qww_A 416 HGKDHPY 422 (433)
T ss_dssp TCTTCHH
T ss_pred cCCCChH
Confidence 466654
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.00 E-value=0.0042 Score=60.49 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCC
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-----DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS---SKY 121 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-----d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd---P~~ 121 (720)
.+++....++..|.|+.|+..+..++.+..++.. ..+.+++.+|.+++.. ++|.+|...|.+||.+. +.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~--~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD--KEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677888999999999999999998877643332 3567889999999996 99999999999998652 111
Q ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 122 ----------------------SKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 122 ----------------------~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
....|+.|.||..++++++|+..++..-. .-..+...-.|+++
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 25779999999999999999988654211 11344555555544
No 230
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.00 E-value=0.0029 Score=78.81 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------Cc---------chHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPK---------NH---------IDVAYLRSNMAGCYMQMGLGEFPRAINECNL 113 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~---------~~---------~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~k 113 (720)
.+.|..+...|+|++|...|+++-...-. +. .....+|+++|.++..+ |++++||..|.+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~--G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQK--GMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCHHHHHHHHHh
Confidence 34588888888888888888776311100 00 00135788888888887 888888888877
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005002 114 ALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN 154 (720)
Q Consensus 114 ALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~ 154 (720)
| +++.+|++.|.++..+|+|++|+++|.+|....++
T Consensus 1131 A-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1131 A-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred c-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 5 77888888888888888888888888888887744
No 231
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=96.42 E-value=0.023 Score=49.56 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=65.6
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHh---hcCCCceEEEE
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEML---FNSQSFLRLYI 336 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~---~~~~~~~rL~v 336 (720)
...||+-|..+-|+|++|..+.|++|..+|...| ...+.|.|. ...=+|.+.+-+||--|+.. +....++|+.+
T Consensus 4 dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~af--Gq~ldl~y~-nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL 80 (94)
T 2jrh_A 4 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVF--GQPLDLHYM-NNELSILLKNQDDLDKAIDILDRSSSMKSLRILL 80 (94)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHH--CSSEEEEEE-CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHh--CCeeeeEEe-cceeEEeccCHHHHHHHHHHhccCccccceEEEE
Confidence 3459999999999999999999999999999999 467999999 55678999999999999765 34466788887
Q ss_pred Ee
Q 005002 337 AE 338 (720)
Q Consensus 337 ~e 338 (720)
+.
T Consensus 81 ~~ 82 (94)
T 2jrh_A 81 LS 82 (94)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 232
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=95.98 E-value=0.043 Score=48.97 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=64.6
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhh---cCCCceEEEE
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLF---NSQSFLRLYI 336 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~---~~~~~~rL~v 336 (720)
...||+-|..+-|+|++|..+.|++|..+|...|. ..+.|.|. ...=+|.|.+-+||--|+... ....++|+.+
T Consensus 31 dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afG--q~ldl~y~-nnEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 31 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG--QPLDLHYM-NNELSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHS--SCCEEEEE-CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEe-cceEEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 45699999999999999999999999999999994 67899999 556789999999999997663 3456788877
Q ss_pred E
Q 005002 337 A 337 (720)
Q Consensus 337 ~ 337 (720)
+
T Consensus 108 ~ 108 (111)
T 2c60_A 108 L 108 (111)
T ss_dssp E
T ss_pred e
Confidence 5
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.97 E-value=0.099 Score=56.52 Aligned_cols=103 Identities=15% Similarity=0.019 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc------------------hHHHHHHHHHHHHHHcCCCCHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI------------------DVAYLRSNMAGCYMQMGLGEFPRA 107 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~------------------d~a~l~~NrAa~y~kL~~gdyeeA 107 (720)
.....+...|......|+...|+..|.+|+.+.....- .+..+...++.+++.+ |++.+|
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~--g~~~~a 190 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC--GRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHH
Confidence 44567777888888899999999999999998754321 0134555667777776 999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 108 INECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 108 I~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
+..+..++..+|-+-.+|..+-.+|+..|+..+|+..|+++-.
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 234
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=95.90 E-value=0.041 Score=48.55 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=65.0
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhh---cCCCceEEEE
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLF---NSQSFLRLYI 336 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~---~~~~~~rL~v 336 (720)
...||+-|..+-|+|++|..+.|++|..+|...|. ..+.|.|. ...=+|.|.+-+||--|+... ....++|+.+
T Consensus 20 dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afG--q~ldl~y~-nnEL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 20 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYT-NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHT--SCEEEEEE-ETTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEe-cceeEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 45599999999999999999999999999999994 67999999 555789999999999997763 3466788877
Q ss_pred Ee
Q 005002 337 AE 338 (720)
Q Consensus 337 ~e 338 (720)
+.
T Consensus 97 ~~ 98 (100)
T 2npt_B 97 VI 98 (100)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 235
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.89 E-value=0.003 Score=70.37 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=102.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH-----------------------HHHHHHH
Q 005002 40 DTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLR-----------------------SNMAGCY 96 (720)
Q Consensus 40 d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~-----------------------~NrAa~y 96 (720)
+...+...+..+...|+++++.|+|++|+..|.+|. +|..-.....++ ..+..+|
T Consensus 140 eA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 140 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY 217 (449)
T ss_dssp THHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHH
Confidence 445567788899999999999999999999999993 221000011122 2344678
Q ss_pred HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHh
Q 005002 97 MQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYK--ALNRLDFAFRDVNNVLSMEP-----NNSSALEVLESVKQSM 169 (720)
Q Consensus 97 ~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~--~LGryeeAl~d~ekAL~LdP-----~n~~A~~~L~~lk~~l 169 (720)
.+. |.+++|+..++.+|.+++.+...+..+|.+|. ..+++.++++.|...+.+.| .+...|..+.-++...
T Consensus 218 ek~--G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 218 QDR--GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHT--TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHC--CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 886 99999999999999999999999999988884 46789999999998888888 8888888888888766
Q ss_pred hhhccC
Q 005002 170 IEKGID 175 (720)
Q Consensus 170 ~eka~a 175 (720)
++...+
T Consensus 296 ~e~d~A 301 (449)
T 1b89_A 296 EEYDNA 301 (449)
T ss_dssp TCHHHH
T ss_pred chHHHH
Confidence 654433
No 236
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.66 E-value=0.018 Score=62.65 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=67.0
Q ss_pred HHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005002 74 ALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153 (720)
Q Consensus 74 AL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP 153 (720)
++.++|.++ .+|.-++.+++.. |+++.|+..+++||.++|+ .-+|..+|.++...|++++|+..|.+|+.++|
T Consensus 269 a~~~~~~~a----~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TLPELNNLS----IIYQIKAVSALVK--GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCGGGTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hcccCCcCH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 335667766 5787788777765 9999999999999999985 67889999999999999999999999999999
Q ss_pred CCHH
Q 005002 154 NNSS 157 (720)
Q Consensus 154 ~n~~ 157 (720)
..+.
T Consensus 342 ~~~t 345 (372)
T 3ly7_A 342 GANT 345 (372)
T ss_dssp SHHH
T ss_pred CcCh
Confidence 8864
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.35 E-value=0.044 Score=50.97 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEG---AMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~Gdyee---Al~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
..++.|-.+.+..+... +|..+...+.-. .+...-.+++.+|..|+++ |+|.+|+.+|+..|+++|+|..|.-
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~ykl--g~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44556666777666655 788887766643 1223457999999999998 9999999999999999999998876
Q ss_pred HHHHH
Q 005002 127 KRAQC 131 (720)
Q Consensus 127 rrA~A 131 (720)
.+..+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.28 E-value=0.033 Score=58.87 Aligned_cols=82 Identities=6% Similarity=-0.040 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHh-hhhc
Q 005002 103 EFPRAINECNLALEVSSK--YSKALLKRAQCYKAL-----NRLDFAFRDVNNVLSMEPNN-SSALEVLESVKQSM-IEKG 173 (720)
Q Consensus 103 dyeeAI~d~~kALeLdP~--~~KAy~rrA~Ay~~L-----GryeeAl~d~ekAL~LdP~n-~~A~~~L~~lk~~l-~eka 173 (720)
....|...+++||+++|+ +..+|..+|..|..+ |+.+.|...|++||.++|+. ..++...+...-.. ++..
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 467899999999999999 566999999999996 99999999999999999975 88888777766542 4332
Q ss_pred --cChhHHhhhcC
Q 005002 174 --IDIDEKMKEFG 184 (720)
Q Consensus 174 --~a~~ek~~~L~ 184 (720)
...-++....+
T Consensus 258 ~a~~~L~kAL~a~ 270 (301)
T 3u64_A 258 GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 22335666666
No 239
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.15 E-value=0.12 Score=60.32 Aligned_cols=117 Identities=8% Similarity=-0.098 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+...++...+.|+.+.|...|.+|+...|.... .+|...|..-.+. .++++.|...|+++|+..|+++..+...+
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~---~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP---DIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT---HHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 4455555566778899999999999997443332 4676666666665 35699999999999999999999888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhh
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPN---NSSALEVLESVKQSMI 170 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~---n~~A~~~L~~lk~~l~ 170 (720)
......|+.+.|...|++|+...|+ ....+..........|
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 9889999999999999999999884 4555666655555554
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.97 E-value=0.22 Score=47.34 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 50 ELKEEGNKLFQKRDH---EGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~Gdy---eeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
..++.+-.+.+..+. ..++..++..+.-.|... -.+++.+|..|+++ |+|.+|..+|+..|+++|+|..|.-
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~---RdcLYyLAvg~ykl--~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch---hHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 445666777776654 568889999888777544 37999999999998 9999999999999999999988866
Q ss_pred HHHHH
Q 005002 127 KRAQC 131 (720)
Q Consensus 127 rrA~A 131 (720)
.+..+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 241
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.92 E-value=0.11 Score=60.39 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005002 64 HEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAI-NECNLALEVSSKYSKALLKRAQCYKALNRLDFAF 142 (720)
Q Consensus 64 yeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI-~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl 142 (720)
.......|++||...|.++ .+|...|..+... ++...|+ ..+.+|+..+|.+...++..+......|+++.|.
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~----~lW~~ya~~~~~~--~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAP----EIWFNMANYQGEK--NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHH--SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3445667888888888777 4777777766665 6677776 7788888888888877777888888888888888
Q ss_pred HHHHHHHHc
Q 005002 143 RDVNNVLSM 151 (720)
Q Consensus 143 ~d~ekAL~L 151 (720)
..|++++..
T Consensus 399 ~iyek~l~~ 407 (679)
T 4e6h_A 399 TTILSCIDR 407 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.71 E-value=0.2 Score=47.07 Aligned_cols=78 Identities=9% Similarity=-0.052 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005002 50 ELKEEGNKLFQKRDH---EGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALL 126 (720)
Q Consensus 50 ~lKeeGn~lfk~Gdy---eeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~ 126 (720)
..++.+-.+.+..+. ..+|..++..++..|.. +-.+++.+|..+.++ |+|.+|+.+++..|+++|+|..|.-
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~ykl--gdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHH--TCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 445566677766654 57899999988877643 347999999999999 9999999999999999999998876
Q ss_pred HHHHHH
Q 005002 127 KRAQCY 132 (720)
Q Consensus 127 rrA~Ay 132 (720)
.+..+-
T Consensus 117 Lk~~Ie 122 (134)
T 3o48_A 117 LKSMVE 122 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.76 E-value=0.24 Score=48.15 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcc------------------hHHHHHHHHHHHHHHcCCCCH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLL---PKNHI------------------DVAYLRSNMAGCYMQMGLGEF 104 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~---P~~~~------------------d~a~l~~NrAa~y~kL~~gdy 104 (720)
..++.+.-.|+.+|.+|+|..|...|++||.+. +++.. ..+.+.+..|.||+++ +++
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l--~~~ 138 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL--KQD 138 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH--CCH
Confidence 567788899999999999999999999997543 22220 1235889999999998 999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005002 105 PRAINECNLALEVSSKYSKALLKRAQCY 132 (720)
Q Consensus 105 eeAI~d~~kALeLdP~~~KAy~rrA~Ay 132 (720)
.+||...+.. -..-..++..+.+|+.|
T Consensus 139 ~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 139 KDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 9999875443 12235788888888765
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.47 E-value=1.1 Score=43.13 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCCCcch----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005002 65 EGAMLKYEKALKLLPKNHID----VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDF 140 (720)
Q Consensus 65 eeAl~~Y~kAL~L~P~~~~d----~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryee 140 (720)
+.-+..|++|+...|-...- -+.+|.+.|.. ..+ ++.++|...|+.++.++..+++.+...|.--.+.|+...
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei--~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~k 112 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI--QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKK 112 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH--HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh--cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHH
Confidence 78889999999998865321 26777777755 555 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHH
Q 005002 141 AFRDVNNVLSMEPNNSSAL 159 (720)
Q Consensus 141 Al~d~ekAL~LdP~n~~A~ 159 (720)
|...+.+|+.+.|......
T Consensus 113 ARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 113 SKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHhccCCCcHHHH
Confidence 9999999999999876543
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.73 E-value=0.79 Score=51.57 Aligned_cols=80 Identities=6% Similarity=-0.113 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 88 LRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167 (720)
Q Consensus 88 l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~ 167 (720)
++.++|...... ..+..|..+|.+|+.++|++..+|..+|......|++-+|+-+|.++|......+.++.+|..+..
T Consensus 154 ~l~~LGDL~RY~--~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYR--NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHH--HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 444556555553 688999999999999999999999999999999999999999999999988889999999998877
Q ss_pred Hh
Q 005002 168 SM 169 (720)
Q Consensus 168 ~l 169 (720)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 246
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=89.41 E-value=5.1 Score=44.34 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH 82 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~ 82 (720)
+...+.-+...|+.+.|...|.+|+.. |.+.
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 444555566777888888888888887 7765
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.25 E-value=0.85 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 101 LGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 101 ~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
.++|+-|+..+.+|+.+-|+....|++++.||..+|+|+.|+-.++.+
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999665544
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.40 E-value=4.5 Score=44.12 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCCH----H
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKN--HIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS---SKYS----K 123 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~--~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd---P~~~----K 123 (720)
..|..++..|+|.+|+..+.+.+...... ..-...+|......|+.+ +++.++...+.+|.... +.++ .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~--~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL--SNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 47899999999999999999999866542 223567888888999998 99999999999987653 1223 3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 005002 124 ALLKRAQCYK-ALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 124 Ay~rrA~Ay~-~LGryeeAl~d~ekAL~ 150 (720)
....-|..+. ..++|..|..+|-.++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 3445688888 89999999999999875
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.89 E-value=4.1 Score=42.42 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=53.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 005002 56 NKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKA 124 (720)
Q Consensus 56 n~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KA 124 (720)
..+++.|+.++|+......|+-.|.+.. +...+-..++-. |+|++|...++.+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~----~R~~LfqLLcv~--G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCID--GDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHH----HHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhhHH
Confidence 4678999999999999999999999995 555555555554 99999999999999999987654
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.85 E-value=2.6 Score=45.99 Aligned_cols=100 Identities=10% Similarity=-0.047 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCC---HH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS---SKY---SK 123 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd---P~~---~K 123 (720)
.+...|..++..|+++.|+..|.++........ ....++.+...+++.. ++|..+...+.++-.+- +++ .+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~--~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFY--NDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 355799999999999999999999998776554 3456666666777766 89999999999996652 222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005002 124 ALLKRAQCYKALNRLDFAFRDVNNVLSME 152 (720)
Q Consensus 124 Ay~rrA~Ay~~LGryeeAl~d~ekAL~Ld 152 (720)
.....|..+...++|..|...|..++.-.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 44556888889999999999998887653
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.64 E-value=1.4 Score=52.00 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNL 113 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~k 113 (720)
-|..++.-+..+|+|+-|+..-.+|+.+.|... ..|+.+|.||..+ |+|+.|+-..+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF----~tW~~La~vYi~l--~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSF----ESWYNLARCHIKK--EEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh----HHHHHHHHHHHHh--ccHHHHHHHHhc
Confidence 456667788899999999999999999999999 5999999999999 999999954433
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=86.05 E-value=3.6 Score=46.17 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLK 127 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~r 127 (720)
-.-+.-.|+...-+..+..|..+|.+|+.+.|.+. ..|+.+|.++... +++-.|+-+|.++|....-++.|.-+
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G----~~~nqLavla~~~--~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSK--GDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHT--TCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC----chHHHHHHHHhcc--cccHHHHHHHHHHHhcCCCChhHHHH
Confidence 34567789999999999999999999999999999 6999999999885 89999999999999988779999888
Q ss_pred HHHHHHH
Q 005002 128 RAQCYKA 134 (720)
Q Consensus 128 rA~Ay~~ 134 (720)
+...+..
T Consensus 226 L~~~f~~ 232 (497)
T 1ya0_A 226 LQKALSK 232 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 253
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=83.98 E-value=19 Score=39.87 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKL--LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS-KYSKALLK 127 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L--~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP-~~~KAy~r 127 (720)
+...-+.+.+.|++++|+..|.+.... .|+. ..|+.+-.+|.+. |++++|...+....+..- -+...|..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-----~tyn~lI~~~~~~--g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-----RSYGPALFGFCRK--GDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-----ceehHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 444556778889999999999887654 2332 4677777778886 899999998888877532 25677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNNVLS--MEPNNSSA 158 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ekAL~--LdP~n~~A 158 (720)
+-.+|...|++++|...|++... +.|+...+
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 88889999999999999888765 45654443
No 254
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=83.73 E-value=10 Score=41.95 Aligned_cols=110 Identities=9% Similarity=-0.151 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRA 129 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~~KAy~rrA 129 (720)
.+..-+....+.++.+.|...|.+| ..|... ..+|...|..-..+ .++++.|...++.+++.-|+.+..+...+
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~---~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL--GNEGVG---PHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCC---HHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCC---hHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3444445555667799999999999 345432 24666666665555 24699999999999999999888877778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 130 QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSM 169 (720)
Q Consensus 130 ~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l 169 (720)
.-...+|+.+.|...|+++ +.....+..........
T Consensus 362 d~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 8788899999999999987 34445554444444433
No 255
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.05 E-value=18 Score=35.69 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--h--C----------
Q 005002 53 EEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE--V--S---------- 118 (720)
Q Consensus 53 eeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe--L--d---------- 118 (720)
..+-.+|-.|.|..|+-...+ .|. ++..+--+.||.++ ++|..|+...+..|+ . +
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~------lNT---~Ts~YYk~LCy~kl--KdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK------LNT---CTSKYYESLCYKKK--KDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT------CCB---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred hhhhhhhhcchHhHHHHHHHh------cch---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccccCccccccccee
Confidence 356677777877777665432 222 25666679999998 999999999999993 2 2
Q ss_pred ---CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 005002 119 ---SKYSKA-LLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158 (720)
Q Consensus 119 ---P~~~KA-y~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A 158 (720)
|.+-.- +..+|..+..+|+.++|+.+|.+.....|-.+..
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 333333 4557999999999999999999999998876553
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.42 E-value=8.2 Score=40.21 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 101 LGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165 (720)
Q Consensus 101 ~gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~l 165 (720)
.++...|+..+...|+.+|.+.+.-..+...|.-.|+++.|..-++.+.+++|.....-..+..+
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999987655444333
No 257
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=77.93 E-value=51 Score=32.62 Aligned_cols=71 Identities=18% Similarity=0.102 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC--CC----------CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKAL--KLL--PK----------NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNL 113 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL--~L~--P~----------~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~k 113 (720)
+....-+.-++.+..+|..|+...++.| +.+ |+ ++.|.-.+++-+|....++ |+.++||.++.+
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~--g~r~EaI~y~~~ 139 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLS--GYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHh--cCHHHhhhHhhh
Confidence 4455667889999999999999999999 332 22 1223457888899999887 999999999999
Q ss_pred HHHhCCC
Q 005002 114 ALEVSSK 120 (720)
Q Consensus 114 ALeLdP~ 120 (720)
.....|-
T Consensus 140 Sf~~~~l 146 (242)
T 3kae_A 140 SFGKSFL 146 (242)
T ss_dssp HHHHCCC
T ss_pred hcCCccc
Confidence 8876653
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.28 E-value=45 Score=36.39 Aligned_cols=104 Identities=7% Similarity=-0.094 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCCC
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPK--NHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE---VSSK 120 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~--~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe---LdP~ 120 (720)
.++.-....+..++..|+|.+|.........-.-. +......++.--...|+.. ++|.+|...++++.. -.+.
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~--~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK--GDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhhcccCC
Confidence 45666677899999999999999999886532211 1123456666667777776 999999999998742 2333
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 121 YS----KALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 121 ~~----KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
++ ..+...|..+...++|.+|..+|..++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33 34566799999999999999999999864
No 259
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=73.23 E-value=30 Score=38.30 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q 005002 63 DHEGAMLKYEKALKLL--PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-SKYSKALLKRAQCYKALNRLD 139 (720)
Q Consensus 63 dyeeAl~~Y~kAL~L~--P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-P~~~KAy~rrA~Ay~~LGrye 139 (720)
+.+.|...|.+-.... |+ ...|+.+-.+|.+. |++++|+..++...+.. +-+...|..+-.+|...|+++
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd-----~~tyn~lI~~~~~~--g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPN-----EATFTNGARLAVAK--DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 3678888888766542 33 25788888899997 99999999999987753 236788888999999999999
Q ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHh
Q 005002 140 FAFRDVNNVLSM--EPNNSSALEVLESVKQSM 169 (720)
Q Consensus 140 eAl~d~ekAL~L--dP~n~~A~~~L~~lk~~l 169 (720)
+|+..|++.... .|+.. ....|-.+.-..
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~-ty~~Li~~~~~~ 188 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEP-ELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHH-HHHHHHHHHhhC
Confidence 999999998864 45544 334443333333
No 260
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.85 E-value=5.4 Score=34.18 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
++..|..+..+|..+=+.|+|.+|+.+|..||++
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999865
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=72.50 E-value=13 Score=39.76 Aligned_cols=64 Identities=8% Similarity=-0.006 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
+...+...+..+...|+|.+|+.....++..+|-+- .+|..+..+|... |+..+|+..|.++-+
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E----~~~~~lm~al~~~--Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE----PLWTQLITAYYLS--DRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 344556677888999999999999999999999887 5899999999997 999999998887643
No 262
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.30 E-value=6.1 Score=33.69 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
++..|..+..+|..+=+.|+|.+|+.+|..||.+
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999998864
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.22 E-value=8.5 Score=47.14 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-------------------chHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNH-------------------IDVAYLRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~-------------------~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
+-.|..++..|+|++|..+|.+|-.-..... .....+|......+.+. +.++.+++.+.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~--~~~~~vi~fa~ 923 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE--SAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT--SCCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 5689999999999999999998742221110 00235677777777775 99999999999
Q ss_pred HHHHhCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 113 LALEVSS-KYS----KALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 113 kALeLdP-~~~----KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
.||+..+ +.. ..|.++-.++..+|+|++|...+.
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9998764 333 257788999999999999976654
No 264
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=69.06 E-value=3.6 Score=37.05 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=46.8
Q ss_pred eeecCceEEEe---ccCCC-CHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhh
Q 005002 265 LVFGDDIRWAQ---LPVNC-SIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLF 326 (720)
Q Consensus 265 ~~~g~DiR~~~---~~~~~-s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~ 326 (720)
.+||.|+-+.+ +|++- ||.=|--.+.|||| ..+|.+.|.|-+++--.+| +++-++|....
T Consensus 11 ~VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp-~~~f~~~YIDI~~~~~~l~-d~~~~~ae~I~ 74 (111)
T 1xg8_A 11 VVYGADVICASCVNAPTSKDIYDWLQPLLKRKYP-NISFKYTYIDITKDNDNLT-DHDLQFIERIE 74 (111)
T ss_dssp EEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCT-TSCEEEEEEETTTC---CC-HHHHHHHHHHH
T ss_pred EEEcccccchhccCCCCchhHHHHHHHHHhCcCC-CCceEEEEEeccCCccchh-HHHHHHHHHHh
Confidence 57999998887 46664 89999999999998 7889999999998844442 45777787765
No 265
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=66.32 E-value=12 Score=33.00 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHhh---ccccccc-cccccccHHHHHHHHHHHHhhhhhccCCCccccchhhhccch
Q 005002 636 EECLEVAVEKFELAGASPTDIAVMIKN---HCSNETA-LEGFGFKIDEIVQAWNEMYDAKRWQIGVPSFRLEPLFRRRVP 711 (720)
Q Consensus 636 ~~~l~~avekf~~ag~~~~di~~~~kn---h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (720)
-..+.+|+.-..+..|++.||..+++. +...--. .+-+| +|.++...+.+|+. .|.|.|+.-|++++.+-
T Consensus 25 ~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~G--ld~~~~~~~~l~~~----~g~~~~~p~~~L~~~v~ 98 (110)
T 3ctv_A 25 FVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFG--AEQIAKRLEELAKQ----FGKKIFEPAKTLKEGKL 98 (110)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHC--HHHHHHHHHHHHHH----HCCGGGSCCHHHHTTTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHH--HHHHHHHHHHHHHH----hCCCcCCCCHHHHHHHH
Confidence 345778888888888999999999874 2221100 01134 78899999999873 45678888899887653
No 266
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=64.73 E-value=9.7 Score=33.13 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
++..|..+..+|..+=..|+|++|+.+|..|+.+
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999998865
No 267
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=64.54 E-value=1.3e+02 Score=32.04 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----cchHHHH-------HHHHHHHHHHcC-----CCCHHHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKN----HIDVAYL-------RSNMAGCYMQMG-----LGEFPRAINECNL 113 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~----~~d~a~l-------~~NrAa~y~kL~-----~gdyeeAI~d~~k 113 (720)
.....|..++..|++.+|+..|+.+|...|-. ..+...+ .-..-.+-+.+. ....+.....++.
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 34578999999999999999999999888732 2111111 111111111210 0001122222222
Q ss_pred H-----HHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 114 A-----LEVSSKYSKALLKRAQ-CYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 114 A-----LeLdP~~~KAy~rrA~-Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
| ..+.|.+.-.-++.|. ..++.++|--|....++.|++.|.. ........++...+
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~~~~qArkil~~ce 245 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP-EVAQQTRKILSACE 245 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHh
Confidence 2 1224444443344443 4578899999999999999998863 33344444544443
No 268
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=62.25 E-value=12 Score=31.75 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
++..|..+..+|...=..|+|++|+..|..|+++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999875
No 269
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=61.32 E-value=33 Score=33.00 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=66.2
Q ss_pred HhCCCCcchHHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHH
Q 005002 76 KLLPKNHIDVAYLRSNMAGCYMQMGLGEF------PRAINECNLALEVSSK--------YSKALLKRAQCYKALNRLDFA 141 (720)
Q Consensus 76 ~L~P~~~~d~a~l~~NrAa~y~kL~~gdy------eeAI~d~~kALeLdP~--------~~KAy~rrA~Ay~~LGryeeA 141 (720)
-+.|++++ .|.+.....-+- |+. ++.+..|++|+..-|- |...+.+.|. +..+++.++|
T Consensus 7 ~~~p~~yd----~W~~yl~llE~~--g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~a 79 (161)
T 4h7y_A 7 MMMANNPE----DWLSLLLKLEKN--SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDA 79 (161)
T ss_dssp ---CCSHH----HHHHHHHHHHHH--TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGC
T ss_pred eeCCCCHH----HHHHHHHHHHHc--CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHH
Confidence 35677774 555555555543 777 8888999999987663 4556666664 4777999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc--ChhHHhhhcC
Q 005002 142 FRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI--DIDEKMKEFG 184 (720)
Q Consensus 142 l~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~--a~~ek~~~L~ 184 (720)
...|+.++.+....+-.+-..+.-..+.+.... ..-.++..+.
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 999999999966675555555555544442222 2235555555
No 270
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.57 E-value=35 Score=38.42 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 87 YLRSNMAGCYMQMGLGEFPRAINECNLA--------LEVSSKYSKALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 87 ~l~~NrAa~y~kL~~gdyeeAI~d~~kA--------LeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
..|.++|..+++. ++++.|+..|.++ |.....+.+.+..++......|+++.|...|.
T Consensus 682 ~~W~~la~~al~~--~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 682 MKWRALGDASLQR--FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--CCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 5888888888886 8888888888875 22224455556666666666666666655543
No 271
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.33 E-value=89 Score=35.07 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKA 74 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kA 74 (720)
-..++..|..+.+.++++.|...|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 346789999999999999999999986
No 272
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=60.32 E-value=16 Score=33.15 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
++..|..+..+|..+=..|+|++|+.+|..|+++
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999888863
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=57.62 E-value=15 Score=31.59 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
..|..+..+|..+-..|+|++|+..|..||++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999865
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.07 E-value=15 Score=41.54 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 005002 85 VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS-----KYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNS 156 (720)
Q Consensus 85 ~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP-----~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~ 156 (720)
.+++++-+=..|+.- +.|+.|....+++.-..+ .....+|..|+++...++|.+|..++..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~--~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNN--GEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHS--SCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHcc--CcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 467888888888886 899999999999952211 1256788899999999999999999999999888654
No 275
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=56.49 E-value=22 Score=30.29 Aligned_cols=66 Identities=9% Similarity=0.193 Sum_probs=50.0
Q ss_pred EeccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEEEEeeCC
Q 005002 274 AQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLYIAEVSP 341 (720)
Q Consensus 274 ~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~v~ev~p 341 (720)
+.++.+.|..+|..+++.++.. ...-+|-|+|.+|.++.--.+++- -++..+.+..-+|+|+...|
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~--tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDK--QLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTS--BGGGGTCCTTCEEEEEECCC
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCC--CHHHCCCCCCCEEEEEeCCC
Confidence 3368999999999999999942 345889999999988765555553 23444566678899988877
No 276
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.36 E-value=27 Score=29.90 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=47.7
Q ss_pred cCceEEEeccCCCCHHHHHHHHHhhcC-CCCceeEEeeCCC-CCeee-ecCchHHHHHHHhhcCCCceEEEEEeeCC
Q 005002 268 GDDIRWAQLPVNCSIRLVRDIVRDRFP-SLKGVLVKYKDQE-GDLVT-ITTTDELRFVEMLFNSQSFLRLYIAEVSP 341 (720)
Q Consensus 268 g~DiR~~~~~~~~s~~~L~~~v~~kF~-~~~~~~ikYkDed-GDlVt-itsd~dl~~A~~~~~~~~~~rL~v~ev~p 341 (720)
+.+..-..+|.+.|..+|..++.+.|. .....+|.|.|.+ +..+. +.+|+ -. +...+...--+|+|..-+|
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~-~~--L~~y~i~~G~~I~V~d~~p 94 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDL-QP--LQFYSVENGDCLLVRWSGP 94 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSS-SB--SGGGTCCTTCEEEEECCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCc-cc--HhhcCCCCCCEEEEEecCC
Confidence 455666778999999999999999994 2355889999764 44444 44432 21 2333445557888876555
No 277
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=50.50 E-value=1.2e+02 Score=29.45 Aligned_cols=20 Identities=5% Similarity=-0.404 Sum_probs=13.4
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 005002 128 RAQCYKALNRLDFAFRDVNN 147 (720)
Q Consensus 128 rA~Ay~~LGryeeAl~d~ek 147 (720)
...++..+|++++++..|.+
T Consensus 95 af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 95 MLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 35566677777777776654
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.48 E-value=48 Score=31.79 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc--hHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI--DVAYLRSN-MAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 50 ~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~--d~a~l~~N-rAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
.-...|..+|..|+|-+|-+.++.+....+.... +....+.. +|.++.+...||...|...+.+|+.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466899999999999999999999988776521 12223333 3333333334777777777776655
No 279
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.79 E-value=33 Score=30.01 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=39.9
Q ss_pred cccceeeeeecCc-eEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHH
Q 005002 258 VVTKTVKLVFGDD-IRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDEL 319 (720)
Q Consensus 258 ~~~~~~K~~~g~D-iR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl 319 (720)
.+.+++||.-.+- +|.-++-. |+.+|+.++..+|.-......=+-++||-.|. |+|.
T Consensus 7 ~~~kpfkV~~~~Rs~k~GV~A~--sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~Vd---dEey 64 (91)
T 2eel_A 7 GPARPFRVSNHDRSSRRGVMAS--SLQELISKTLDALVIATGLVTLVLEEDGTVVD---TEEF 64 (91)
T ss_dssp SCCEEEEEECTTSCCCEEEEES--SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCC---CHHH
T ss_pred CCCCCEEEecCCCCeEEeEEcC--CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEe---chhh
Confidence 5778999994332 44444444 79999999999997434344456678997774 6776
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.77 E-value=2.8e+02 Score=29.44 Aligned_cols=117 Identities=15% Similarity=-0.000 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----cchHHHH--HHHHHHHHHHcCCCCHHHHH-----HHHHHHHH---
Q 005002 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKN----HIDVAYL--RSNMAGCYMQMGLGEFPRAI-----NECNLALE--- 116 (720)
Q Consensus 51 lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~----~~d~a~l--~~NrAa~y~kL~~gdyeeAI-----~d~~kALe--- 116 (720)
....|..++..|++.+|+..|+.+|...|-. ..+...+ +...+.-|.-- =..+.+. ++-.+.++
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYila--l~iEl~Rr~l~~~~~kR~lELAA 194 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILG--LSIELERRSLKEGNTVRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHH--HHHHHHHHTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccHHHHHHHHH
Confidence 4558999999999999999999999877632 2222112 11111111110 0000000 01122222
Q ss_pred ------hCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 005002 117 ------VSSKYSKALLKRA-QCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170 (720)
Q Consensus 117 ------LdP~~~KAy~rrA-~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~ 170 (720)
+.|.+...-++.| ...++.++|--|....++.|++.|....+. ....++...+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~-qArkil~~ce 254 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE-QARKIKNKAD 254 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH-HHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHh
Confidence 2343333333343 345789999999999999999999755443 3444444443
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.20 E-value=73 Score=34.58 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSS---- 119 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP---- 119 (720)
-.+=..+.+.|..+.+.|++++-...........+.-+. -.+.+-.++-..+..+ ++..+.-+..|..+|+-.-
T Consensus 16 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~r 94 (394)
T 3txn_A 16 RIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM-DAGTGIEVQLCKDCIEWAKQEKR 94 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 355567889999999999999999988876655554332 1233444555566666 5788888888988886432
Q ss_pred CCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 120 KYSKALL--KRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 120 ~~~KAy~--rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
.+.+.-. ++|..|+..|+|.+|+..+.+.+.
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2334333 899999999999999999998887
No 282
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=44.99 E-value=56 Score=28.73 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHc
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQM 99 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL 99 (720)
+.|+.+..+|..+|+.++|.+|+..|+++..+..+ +.-.-.+-+.++.|--++
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten-~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDN-EEIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC-HHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999876443 321111214455665443
No 283
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=44.47 E-value=21 Score=39.67 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHhhcccccccccccccc-----------HHHHHHHHHHHHhhhhhccCCCccccchh
Q 005002 637 ECLEVAVEKFELAGASPTDIAVMIKNHCSNETALEGFGFK-----------IDEIVQAWNEMYDAKRWQIGVPSFRLEPL 705 (720)
Q Consensus 637 ~~l~~avekf~~ag~~~~di~~~~knh~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (720)
..+.+|+.-+.+.=||+.||..+.+. |+||- +|.++..-+.+|.. .|.|.||--||
T Consensus 396 ~~~nEA~~~l~eGvas~~diD~a~~~---------G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~----~g~~~~~p~~l 462 (483)
T 3mog_A 396 MIINEALDALQKGVASEQDIDTAMRL---------GVNYPYGPLAWGAQLGWQRILRLLENLQHH----YGEERYRPCSL 462 (483)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHH---------HSCCSSCHHHHHHHHCHHHHHHHHHHHHHH----HCCGGGCCCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHh---------CCCCCCCHHHHHHHhCHHHHHHHHHHHHHH----hCCCCCCCCHH
Confidence 34778888888888999999999874 44443 68889999999873 47788999999
Q ss_pred hhccch
Q 005002 706 FRRRVP 711 (720)
Q Consensus 706 ~~~~~~ 711 (720)
+|+++-
T Consensus 463 L~~~v~ 468 (483)
T 3mog_A 463 LRQRAL 468 (483)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 284
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.42 E-value=50 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH 82 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~ 82 (720)
-..-...|..+...|++++|+.+|.+||...|.-.
T Consensus 17 Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 17 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 34446789999999999999999999999999865
No 285
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=43.04 E-value=43 Score=29.13 Aligned_cols=63 Identities=14% Similarity=-0.075 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
...|..+|..|+|-+|-+.++.+..-.|....+.......+|.++.+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34788999999999999999999988855222222344444444444324776 7777777766
No 286
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.93 E-value=54 Score=37.68 Aligned_cols=49 Identities=8% Similarity=-0.140 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
+++..|...+.+.-.-.....++.|-+|+++..+|+.++|...|.++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8999999888765443345688999999999999999999999999875
No 287
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=39.31 E-value=22 Score=30.33 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=29.3
Q ss_pred EEeeCCCCCeeeecCc-hHHHHHHHhhcCCCceEEEEEeeCCCCCCcccC
Q 005002 301 VKYKDQEGDLVTITTT-DELRFVEMLFNSQSFLRLYIAEVSPDQEPAYDG 349 (720)
Q Consensus 301 ikYkDedGDlVtitsd-~dl~~A~~~~~~~~~~rL~v~ev~p~~e~~~~~ 349 (720)
|+-.|+||..+-|.+. +-|++|... .|-+++|+|.-.|++-.
T Consensus 16 Vrli~~~Ge~lGv~~~~eAl~~A~e~-------~LDLVevsp~a~PPVCk 58 (78)
T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEIAARR-------NLDLVLVAPNAKPPVCR 58 (78)
T ss_dssp EEEECTTSCEEEEEEHHHHHHHHHHT-------TCEEEEEETTSSSCEEE
T ss_pred EEEECCCCcCCCcccHHHHHHHHHHc-------CCCEEEECCCCCCCEEE
Confidence 5567999998765554 666677663 24458999988887643
No 288
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.61 E-value=67 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKL 77 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L 77 (720)
+..|..+-.++..+.+.|+|++||.+..+|..+
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 367888899999999999999999999887754
No 289
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.36 E-value=2.4e+02 Score=34.84 Aligned_cols=102 Identities=9% Similarity=-0.048 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCC
Q 005002 48 SQELKEEGNKLFQKRDHEGAMLKYEKALK-----LLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS-SKY 121 (720)
Q Consensus 48 A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~-----L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd-P~~ 121 (720)
-..|...=+.+.+.|+.++|...|...-. ..|+- ..|+-+-..|.+. |++++|+..+++-.+.. .-+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv-----vTYNtLI~Glck~--G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL-----DMYNAVMLGWARQ--GAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH-----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH-----hHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCc
Confidence 34677788899999999999999976432 34442 5888888899997 99999999999987753 226
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--cCCCCH
Q 005002 122 SKALLKRAQCYKALNR-LDFAFRDVNNVLS--MEPNNS 156 (720)
Q Consensus 122 ~KAy~rrA~Ay~~LGr-yeeAl~d~ekAL~--LdP~n~ 156 (720)
.-.|..+-.|+...|+ .++|...|++... +.|+..
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 7778888889999998 5788899988876 456543
No 290
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=35.78 E-value=1.4e+02 Score=28.50 Aligned_cols=50 Identities=10% Similarity=-0.046 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
|.-++--..+...+.-++-++..++.+|.||..+|+..+|-..+.+|.+-
T Consensus 105 ~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 105 GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33333333333334445667999999999999999999999999888753
No 291
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=34.61 E-value=1.7e+02 Score=25.36 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=50.3
Q ss_pred cceeeeeecCc---eEEEeccCCCCHHHHHHHHHhhcC-CCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEE
Q 005002 260 TKTVKLVFGDD---IRWAQLPVNCSIRLVRDIVRDRFP-SLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLY 335 (720)
Q Consensus 260 ~~~~K~~~g~D---iR~~~~~~~~s~~~L~~~v~~kF~-~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~ 335 (720)
..+|.++.... ..-+.++.+.|..+|..+|..++. .....+|-|.+.+|..|.--.+++-. ++..+....-+|+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~t--L~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRP--LGFFSPFDGFRLH 91 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSC--HHHHCCCSCCEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCC--HHHCCCCCCCEEE
Confidence 34455555433 344557899999999999999994 23558889998877654221233322 2223445556788
Q ss_pred EEeeCC
Q 005002 336 IAEVSP 341 (720)
Q Consensus 336 v~ev~p 341 (720)
|+..+|
T Consensus 92 lvd~~p 97 (97)
T 2kj6_A 92 IIDLDP 97 (97)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 877665
No 292
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=34.61 E-value=71 Score=31.56 Aligned_cols=57 Identities=11% Similarity=0.238 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhhhcCCCc--cccchHH----HHHHHHHHHHhhh-cChHHHHHHHHHHHHHHH
Q 005002 387 DWIIEFAQLFKNHVGFDSD--SFLNLHE----LGMKLYSEAMEDT-VTSEEAQELFEMAADNFQ 443 (720)
Q Consensus 387 ~w~~~fa~lf~~~~g~~~d--~~l~l~~----~g~~~~~eale~~-v~~~~a~~lf~~a~~kfq 443 (720)
+|.-+.++.++++.|++++ .++++|. --.+.|.+.|+.. .|.++.+.+.+.|...|+
T Consensus 145 ~~~~~~~~~l~~~~~l~~~~~~f~~~h~~~d~~h~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~ 208 (239)
T 3dde_A 145 GYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDVDSVVAVMENSLV 208 (239)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHhcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999876 5677774 1235577888888 555667777777766665
No 293
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=34.32 E-value=4.3e+02 Score=27.65 Aligned_cols=103 Identities=12% Similarity=-0.088 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCcc-hHHHHHHHHHHHHHHcCCCCHHHH--------------
Q 005002 44 FISMSQELKEEGNKLFQKRDHEGAMLK-YEKALKLLPKNHI-DVAYLRSNMAGCYMQMGLGEFPRA-------------- 107 (720)
Q Consensus 44 lik~A~~lKeeGn~lfk~GdyeeAl~~-Y~kAL~L~P~~~~-d~a~l~~NrAa~y~kL~~gdyeeA-------------- 107 (720)
+.+.-+.++...+.+.++++|++|+.. |.-|+.+.-..-. .-+.+-..+-.+|.+-+..--+..
T Consensus 29 yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 29 YYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 445556677777888999999999988 4445543332221 001111111222322210001111
Q ss_pred ----HHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005002 108 ----INECNLALEV-------SSKYSKALLKRAQCYKALNRLDFAFRDVN 146 (720)
Q Consensus 108 ----I~d~~kALeL-------dP~~~KAy~rrA~Ay~~LGryeeAl~d~e 146 (720)
....++||.- .-.++..+..+|..|..-|++.+|..+|-
T Consensus 109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1222333321 11367788889999999999999988774
No 294
>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport, iron, metal-binding, oxidoreductase, periplasm, transport; HET: HEC; 1.74A {Escherichia coli} SCOP: a.138.1.3 PDB: 1gu6_A* 3l1t_A* 3tor_A* 2rf7_A*
Probab=33.87 E-value=2.5e+02 Score=31.00 Aligned_cols=82 Identities=23% Similarity=0.220 Sum_probs=56.1
Q ss_pred hHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCCCchHHHHHHHHcc
Q 005002 509 YEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQMWEEMEEQRLNGLSKYDKYKAQLQKMG 588 (720)
Q Consensus 509 ~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~w~~~e~~~~~~~~~~~~~~~~~~~~~ 588 (720)
.+.-++-.+.....|...|.|+.+.+-. +.=.+.|+..+...|.+...+|...... .|-+.|
T Consensus 337 ~~~~~~~~~~~~r~Aq~~wd~v~aens~-GfHnP~ea~r~L~~s~~~a~~a~~~l~~-----------------~~~~~~ 398 (452)
T 2rdz_A 337 TEAEMKPIQDDIRHAQWRWDLAIASHGI-HMHAPEEGLRMLGTAMDKAADARTKLAR-----------------LLATKG 398 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSTTH-HHHCHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHcC
Confidence 3455666666788888999999887532 1225789999999999988888765433 344566
Q ss_pred cc--CcCCCCCCcchHHHhhch
Q 005002 589 LD--GLFKDTSPEESAEQAANM 608 (720)
Q Consensus 589 ~~--~~~~~~~~~~~~e~~~~~ 608 (720)
.. -.+.++|..+.+.++.+|
T Consensus 399 ~~~~~~~~~~~t~~~~~~~~g~ 420 (452)
T 2rdz_A 399 ITHEIQIPDISTKEKAQQAIGL 420 (452)
T ss_dssp CCSCCCCCCCSSHHHHHHHTTC
T ss_pred CCCCccCCCCccHHHHHHHcCC
Confidence 55 345678887777666443
No 295
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=33.23 E-value=81 Score=30.61 Aligned_cols=42 Identities=17% Similarity=0.018 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekA 148 (720)
|+++.|.+.+... ++...|-++|......|+++-|...|.++
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 6777777666543 45666777777777777777777776654
No 296
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=33.19 E-value=88 Score=27.54 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH 82 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~ 82 (720)
..-..-...|..++..|+++.|+.+|.+||...|.-.
T Consensus 18 ~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 18 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4444556789999999999999999999999988744
No 297
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.05 E-value=85 Score=36.15 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcc
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMIEKGI 174 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~lk~~l~eka~ 174 (720)
.+.+.+|+..+..|+|.-|...+..++..+|+|..++..+..++..++....
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4577899999999999999999999999999999999999999999985543
No 298
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=32.87 E-value=1.2e+02 Score=30.73 Aligned_cols=57 Identities=19% Similarity=0.028 Sum_probs=42.7
Q ss_pred HcCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 60 QKRDHEGAMLKYEKALKLL----PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 60 k~GdyeeAl~~Y~kAL~L~----P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
..|+-+.|...|+.|+.+. |..+|-+--+..|.+..|+.+ .++.++|+..+..|+..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEI-ln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEK-YGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 4667788999999998643 333334445677888888887 79999999999999763
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.75 E-value=95 Score=34.39 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHhCCCCc--------ch----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--------C--C
Q 005002 63 DHEGAMLKYEKALKLLPKNH--------ID----VAYLRSNMAGCYMQMGLGEFPRAINECNLALEVS--------S--K 120 (720)
Q Consensus 63 dyeeAl~~Y~kAL~L~P~~~--------~d----~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLd--------P--~ 120 (720)
..+.|.....++..+.-++. +. ...+-+++-.+|+++ ++...|...+...-... | .
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl--~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRI--ESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHS--SCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHc--CCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 35788888888888754321 11 134555777889998 77777766553322211 1 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSM-EPNN 155 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L-dP~n 155 (720)
.+..+|.+|+.+...++|.+|..++..|+.. .|.+
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 2456889999999999999999999999998 7765
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.57 E-value=1.7e+02 Score=35.03 Aligned_cols=97 Identities=14% Similarity=-0.018 Sum_probs=69.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhC--------------
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL-EVS-------------- 118 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL-eLd-------------- 118 (720)
....+...|.|+-|.. .+...|.++. .-+-+|.||+.+ |++++|..++.+|- -+.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~----~~yv~gr~~L~~--ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPI----AVYLKALIYLKS--KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 885 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHH----HHHHHHHHHHHT--TCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChH----HHHHHHHHHHHc--CCHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence 4566777787775543 4567777762 346689999998 99999999998763 111
Q ss_pred ------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHH
Q 005002 119 ------SK--YSKALLKRAQCYKALNRLDFAFRDVNNVLS-MEPNNSSALE 160 (720)
Q Consensus 119 ------P~--~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~-LdP~n~~A~~ 160 (720)
+. ....|+.....++..+-|+-++...+.|++ +.++++....
T Consensus 886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~ 936 (950)
T 4gq2_M 886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI 936 (950)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence 11 224667789999999999999999999997 4566665433
No 301
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=30.94 E-value=5.1e+02 Score=27.49 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCcc----hHH----------------HHHHHHHHHHHHcCCCC
Q 005002 45 ISMSQELKEEGNKLFQKRDHEGAMLK-YEKALKLLPKNHI----DVA----------------YLRSNMAGCYMQMGLGE 103 (720)
Q Consensus 45 ik~A~~lKeeGn~lfk~GdyeeAl~~-Y~kAL~L~P~~~~----d~a----------------~l~~NrAa~y~kL~~gd 103 (720)
.+.-+.++...+.+.++++|++|++. |.-|+.+....-. |++ ....++..++..+....
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 56667788888899999999999986 4455544433211 111 11122223332221111
Q ss_pred HHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005002 104 FPRAINECNLALEV-------SSKYSKALLKRAQCYKALNRLDFAFRDV 145 (720)
Q Consensus 104 yeeAI~d~~kALeL-------dP~~~KAy~rrA~Ay~~LGryeeAl~d~ 145 (720)
..+ ....++||.- .-.++..+..+|..|...++|.+|..+|
T Consensus 112 p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 112 PVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 111 2222333221 1246788888999999999999998887
No 302
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=30.04 E-value=78 Score=32.07 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=43.6
Q ss_pred cceeeeeecCceEEEeccCCCCHHHHHHHHHhhcC--CCCceeEEeeCCCCCeeee
Q 005002 260 TKTVKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFP--SLKGVLVKYKDQEGDLVTI 313 (720)
Q Consensus 260 ~~~~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~--~~~~~~ikYkDedGDlVti 313 (720)
+.+++|.+-|+...+.+..+++-.+|++.|.++.. ....|-|.|.|.+|...-+
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wL 56 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWL 56 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEEC
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeec
Confidence 35789999998777888999999999999999994 2244999999988765433
No 303
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=29.48 E-value=1.2e+02 Score=25.30 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLES 164 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~LdP~n~~A~~~L~~ 164 (720)
..+|..+...|++++|...|-+|+.+.|.=......+++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 457888888999999999899999988877666555544
No 304
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.41 E-value=2.8e+02 Score=34.91 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYM 97 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~ 97 (720)
+.++.+++.=..++.+-+.+++-..|++.+...|++-+ +|..+-..+.
T Consensus 1105 ~~~e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~----~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1105 DYAESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQ----ANLLLIQNIE 1152 (1354)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHH----HHHHHHHhhh
Confidence 56677777777777777888999999999999999885 6665555544
No 305
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.34 E-value=2.5e+02 Score=30.47 Aligned_cols=70 Identities=16% Similarity=-0.002 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 005002 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALK---LLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEV 117 (720)
Q Consensus 46 k~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~---L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeL 117 (720)
.....+..+...++..+||..|...++++-. -.+..+.....++.-.|..+..- ++|.+|-.+|..++..
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e--~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK--REYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhc
Confidence 3456677888889999999999999999742 23333333566777777777775 9999999999888754
No 306
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=29.27 E-value=1e+02 Score=25.43 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCceeEEeeCCCCCeeeec--CchHHHHHHHhh
Q 005002 283 RLVRDIVRDRFPSLKGVLVKYKDQEGDLVTIT--TTDELRFVEMLF 326 (720)
Q Consensus 283 ~~L~~~v~~kF~~~~~~~ikYkDedGDlVtit--sd~dl~~A~~~~ 326 (720)
..+...+.+..-+-+.+.|.| ||--||.+ |-.||...+...
T Consensus 8 ~~a~~A~~~L~tG~~~vsV~y---dgr~V~Y~~asi~~L~~~I~~l 50 (68)
T 1hyw_A 8 AAARAALHDLMTGKRVATVQK---DGRRVEFTATSVSDLKKYIAEL 50 (68)
T ss_dssp HHHHHHHHHHTTSCCCEEEEC---SSCEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEE---CCEEEEEecCCHHHHHHHHHHH
Confidence 345555566666778899999 59999999 999999887654
No 307
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=29.20 E-value=57 Score=35.80 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCC-ChhHHHHHHhhcccccccccccccc--------------HHHHHHHHHHHHhhhhhccCC-Ccc
Q 005002 637 ECLEVAVEKFELAGA-SPTDIAVMIKNHCSNETALEGFGFK--------------IDEIVQAWNEMYDAKRWQIGV-PSF 700 (720)
Q Consensus 637 ~~l~~avekf~~ag~-~~~di~~~~knh~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~ 700 (720)
..+.+|+.-..+.=| ++.||..+++. |+||. +|.++..-+.+|. ..|. |.|
T Consensus 366 ~~~nEa~~~l~eGIa~~~~dID~a~~~---------G~G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~----~~g~~~~~ 432 (463)
T 1zcj_A 366 SLINEAFRILEEGMAARPEHIDVIYLH---------GYGWPRHKGGPMFYAASVGLPTVLEKLQKYYR----QNPDIPQL 432 (463)
T ss_dssp HHHHHHHHHHHTTSBSCHHHHHHHHHH---------HSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHH----HCTTCGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHh---------CCCCCCCCcChHHHHHHhCHHHHHHHHHHHHH----HhCCCccC
Confidence 347788888888777 59999988864 44444 5889999999987 3576 789
Q ss_pred ccchhhhccchh
Q 005002 701 RLEPLFRRRVPK 712 (720)
Q Consensus 701 ~~~~~~~~~~~~ 712 (720)
+--||+|+++-.
T Consensus 433 ~p~~lL~~~v~~ 444 (463)
T 1zcj_A 433 EPSDYLRRLVAQ 444 (463)
T ss_dssp SCCHHHHHHHHT
T ss_pred CCCHHHHHHHHc
Confidence 999999987643
No 308
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.73 E-value=2.4e+02 Score=34.31 Aligned_cols=94 Identities=13% Similarity=-0.040 Sum_probs=68.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---h-------------
Q 005002 54 EGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE---V------------- 117 (720)
Q Consensus 54 eGn~lfk~GdyeeAl~~Y~kAL~L~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe---L------------- 117 (720)
....++..+.|+-|.. .+...|.++ ...+-+|.||+.+ |++++|..+|.+|-. .
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~----~~~yl~g~~~L~~--ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDP----IAVYLKALIYLKS--KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCH----HHHHHHHHHHHHT--TCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCc----HHHHHHHHHHHhc--CCHHHHHHHHHHHhhhhcccchhhhhhccccc
Confidence 3445777777766554 345677777 3457789999998 999999999988721 1
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Q 005002 118 -------SSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP-NNSS 157 (720)
Q Consensus 118 -------dP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP-~n~~ 157 (720)
....+..|+.....+...+.++.++...+.|+...+ ++..
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~ 935 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 935 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence 112345677788899999999999999999998654 4543
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.59 E-value=1.3e+02 Score=36.12 Aligned_cols=83 Identities=7% Similarity=-0.000 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc----c---------------hHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 005002 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNH----I---------------DVAYLRSNMAGCYMQMGLGEFPRAINECN 112 (720)
Q Consensus 52 KeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~----~---------------d~a~l~~NrAa~y~kL~~gdyeeAI~d~~ 112 (720)
+-.|..++..|++++|..+|.+|-.-...+. . ..+.+|.+.+..+.+. +-|+-++..+.
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~--~a~~~vi~fA~ 921 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE--SAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 5689999999999999999998763221110 0 0244777888888876 99999999999
Q ss_pred HHHHh-CCCCHH----HHHHHHHHHHHcC
Q 005002 113 LALEV-SSKYSK----ALLKRAQCYKALN 136 (720)
Q Consensus 113 kALeL-dP~~~K----Ay~rrA~Ay~~LG 136 (720)
.||+. .+++.. .+.++-++..++|
T Consensus 922 lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 922 LADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 99975 455544 5666666655544
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.91 E-value=71 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-------HHHcCCCCHHHHHHHH
Q 005002 123 KALLKRAQCYKALNRLDFAFRDVNN-------VLSMEPNNSSALEVLE 163 (720)
Q Consensus 123 KAy~rrA~Ay~~LGryeeAl~d~ek-------AL~LdP~n~~A~~~L~ 163 (720)
..+-|++..+..-|+|++|+...++ |+++- .+..++..|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~~SLq 62 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAHLSLE 62 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 3455666777777777776655544 44444 4455554443
No 311
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.55 E-value=1.3e+02 Score=32.51 Aligned_cols=76 Identities=17% Similarity=0.092 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHH
Q 005002 86 AYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSK---YSKALLKRAQCYKALNRLDFAFRDVNNVLSM--EPNNSSALE 160 (720)
Q Consensus 86 a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~---~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L--dP~n~~A~~ 160 (720)
..++..+|..|+.. |++..|++.+.++...... -...++..-+++...+++..+...+.++..+ ...+...+.
T Consensus 131 ~~~~~~la~~~~~~--Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQI--GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHH--CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34778899999998 9999999999999876543 3578888999999999999999999999775 233444443
Q ss_pred HHH
Q 005002 161 VLE 163 (720)
Q Consensus 161 ~L~ 163 (720)
.+.
T Consensus 209 ~lk 211 (429)
T 4b4t_R 209 RYK 211 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 312
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.84 E-value=1.4e+02 Score=25.27 Aligned_cols=78 Identities=6% Similarity=-0.037 Sum_probs=49.3
Q ss_pred ceeeeeecCc--eEEEeccCCCCHHHHHHHHHhhcC-CCCceeEEeeCCCCCeee-ecCchHHHHHHHhhcCCCceEEEE
Q 005002 261 KTVKLVFGDD--IRWAQLPVNCSIRLVRDIVRDRFP-SLKGVLVKYKDQEGDLVT-ITTTDELRFVEMLFNSQSFLRLYI 336 (720)
Q Consensus 261 ~~~K~~~g~D--iR~~~~~~~~s~~~L~~~v~~kF~-~~~~~~ikYkDedGDlVt-itsd~dl~~A~~~~~~~~~~rL~v 336 (720)
.+|++++... ..-+.++.+.|..+|..+|..++. .....+|-|.+.+|-.+. +..|+ - -+...+....-+|+|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~-~--tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED-A--LLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSS-S--BTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCc-C--CHhHCCCCCCCEEEE
Confidence 4566666544 344567899999999999999994 234588888887666542 22222 1 112223334457888
Q ss_pred EeeCC
Q 005002 337 AEVSP 341 (720)
Q Consensus 337 ~ev~p 341 (720)
+...|
T Consensus 85 ~d~~P 89 (95)
T 1v6e_A 85 IDHSG 89 (95)
T ss_dssp BCCSC
T ss_pred EECCc
Confidence 87766
No 313
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.98 E-value=1.3e+02 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005002 126 LKRAQCYKALNRLDFAFRDVNNVLS 150 (720)
Q Consensus 126 ~rrA~Ay~~LGryeeAl~d~ekAL~ 150 (720)
..+|.-+-..|+|++|+..|..++.
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444556666666666666554
No 314
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=25.22 E-value=2e+02 Score=25.61 Aligned_cols=80 Identities=9% Similarity=0.070 Sum_probs=52.6
Q ss_pred ceeeeeecCc--eEEEeccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCCCeee-ecCchHHHHHHHhhcCCCceEEEE
Q 005002 261 KTVKLVFGDD--IRWAQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEGDLVT-ITTTDELRFVEMLFNSQSFLRLYI 336 (720)
Q Consensus 261 ~~~K~~~g~D--iR~~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedGDlVt-itsd~dl~~A~~~~~~~~~~rL~v 336 (720)
.+|.|++... ..-+.++.+.|..+|..+|..++.. ....+|-|.+.+|-.|. +..| +- -+...+....-+|+|
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D-~~--tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG-AK--SLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCC-SS--BTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCC-cC--CHHHCCCCCCCEEEE
Confidence 4556665544 3445678899999999999999842 34588999987776542 3233 21 122234455679999
Q ss_pred EeeCCCC
Q 005002 337 AEVSPDQ 343 (720)
Q Consensus 337 ~ev~p~~ 343 (720)
+-..|.-
T Consensus 84 vd~~p~~ 90 (122)
T 1t0y_A 84 VDVTGGN 90 (122)
T ss_dssp EECTTCC
T ss_pred EeCCCCC
Confidence 8888753
No 315
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.90 E-value=2e+02 Score=26.23 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=55.5
Q ss_pred ccceeeee--ecCceEEEeccCCCCHHHHHHHHHhhcCC-CCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEE
Q 005002 259 VTKTVKLV--FGDDIRWAQLPVNCSIRLVRDIVRDRFPS-LKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLY 335 (720)
Q Consensus 259 ~~~~~K~~--~g~DiR~~~~~~~~s~~~L~~~v~~kF~~-~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~ 335 (720)
..-|||+. -+++...+.++.++|..+|.+.+...|.. ....+|-|. |-- +-+++=| ... -...+++|.|.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~---GKi--LKD~eTL-~~~-gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS---GKI--LKNNETL-VQH-GVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET---TEE--ECSSCCH-HHH-SCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC---CeE--cCCcchH-HHc-CCCCCCEEEEE
Confidence 44566654 45678888899999999999999999941 344777775 331 1223222 122 23568889999
Q ss_pred EEeeCCCCCCc
Q 005002 336 IAEVSPDQEPA 346 (720)
Q Consensus 336 v~ev~p~~e~~ 346 (720)
+....|++-|-
T Consensus 87 i~s~~p~~~p~ 97 (118)
T 2daf_A 87 IFSTNPDLYPV 97 (118)
T ss_dssp EEESCTTTSCC
T ss_pred EecCCCccCcc
Confidence 99999988773
No 316
>3bnj_A Cytochrome C-552; C-type cytochrome, nitrite reductase, sulfite complex, calcium, electron transport, heme, iron, metal-binding; HET: HEM; 1.30A {Wolinella succinogenes} PDB: 3bnh_A* 3bng_A* 1fs9_A* 1fs7_A* 1fs8_A* 2e80_A* 2e81_A* 3bnf_A* 1qdb_A*
Probab=24.78 E-value=4.1e+02 Score=29.60 Aligned_cols=106 Identities=19% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCchhhHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 005002 483 AHEWAKKEYAMAGMRYQEALKIKQDFYEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQM 562 (720)
Q Consensus 483 ~~~~~~~~y~~a~~kye~a~~ikpdf~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~ 562 (720)
...-++..+.++-..++.|.... =.+..++-.+...+.|...|.|+.+.+-. +.=.+.|++++...|.+...+|..+
T Consensus 329 ~~~~~~~~l~~~~~~~~~a~~ag--~~~~~~~~a~~~~r~Aq~~wd~v~aens~-gfHnP~~a~~~L~~s~~~a~~a~~~ 405 (485)
T 3bnj_A 329 LQDIAFDNIGKAHLETGKAMELG--ATDAELKEIRTHIRHAQWRADMAIAGHGS-FFHAPEEVLRLLASGNEEAQKARIK 405 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHHHHHHSSTTH-HHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhheeeccCcc-cccCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555432 23466777788888999999999887542 1225778888888888888888775
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHcccc-CcCCCCCCcchHHHhhch
Q 005002 563 WEEMEEQRLNGLSKYDKYKAQLQKMGLD-GLFKDTSPEESAEQAANM 608 (720)
Q Consensus 563 w~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~ 608 (720)
... .+-+.|.. =..+++|..+.+.++.+|
T Consensus 406 l~~-----------------~~~~~g~~~~~~~~~~t~~~~~~~~g~ 435 (485)
T 3bnj_A 406 LVK-----------------VLAKYGAIDYVAPDFETKEKAQKLAKV 435 (485)
T ss_dssp HHH-----------------HHHHTTCTTCCCCCCCSHHHHHHHTTC
T ss_pred HHH-----------------HHHHcCCCcccCCCcchHHHHHHHhCC
Confidence 432 24456655 335678887777666444
No 317
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.32 E-value=1.5e+02 Score=32.07 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..-|+..+|++|+.+|+|++|+...+.++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3568889999999999999999999999864
No 318
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=23.79 E-value=1.8e+02 Score=29.86 Aligned_cols=51 Identities=25% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKLL---PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALE 116 (720)
Q Consensus 65 eeAl~~Y~kAL~L~---P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALe 116 (720)
+.|...|+.|+.+. |..++-+--+..|.+..|+.+ .++.++|+..+..|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEi-ln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEI-LNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 45677777777642 222333445556666666665 5777777777777653
No 319
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=22.99 E-value=1.5e+02 Score=25.59 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=32.3
Q ss_pred CChhHHhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005002 37 FDEDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKAL 75 (720)
Q Consensus 37 ~d~d~~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL 75 (720)
+......++++|..+.+.|.-++.+||+..|+..+.-|-
T Consensus 28 l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 66 (87)
T 2pmr_A 28 LSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAH 66 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444556688999999999999999999999998876654
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.72 E-value=97 Score=35.05 Aligned_cols=71 Identities=8% Similarity=-0.076 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 005002 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNH---IDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKY 121 (720)
Q Consensus 47 ~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL~L~P~~~---~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kALeLdP~~ 121 (720)
+|.-+...=..|...+.|+.|.....++. .|.+. ...+.+++..|.+++-. ++|.+|..++..|++..|.+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q--~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQ--LDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCcc
Confidence 35555566677888999999999999986 55432 24578888899999986 99999999999999988854
No 321
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.69 E-value=2e+02 Score=28.99 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
+.|...|+.|+.+ .|..+|-+--+..|.+..|+.+ .++.++|+..+..|+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEi-l~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEI-LNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4566667766632 2333333444555566666654 477777777666654
No 322
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=22.68 E-value=68 Score=29.70 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=24.5
Q ss_pred ceEEEeccCCCCHHHHHHHHHhhcC--CCCceeE
Q 005002 270 DIRWAQLPVNCSIRLVRDIVRDRFP--SLKGVLV 301 (720)
Q Consensus 270 DiR~~~~~~~~s~~~L~~~v~~kF~--~~~~~~i 301 (720)
|-..+-||.+.|+.+++..|+++.. ...++-+
T Consensus 53 dk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl 86 (130)
T 2zjd_A 53 DKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFL 86 (130)
T ss_dssp SCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEE
T ss_pred cccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEE
Confidence 4566789999999999999999983 3344444
No 323
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA, oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Probab=21.99 E-value=4.9e+02 Score=28.69 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=60.2
Q ss_pred hhHHHHHhhHHHHHHHhHhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCCCchHHHHHHHHc
Q 005002 508 FYEGLLALGQQQFEQAKLCWYYAIGNKIDLESGPAEEVLELYNKAEDSMEKGVQMWEEMEEQRLNGLSKYDKYKAQLQKM 587 (720)
Q Consensus 508 f~e~~~algq~~fe~akl~~~~~~~~~~d~~~~~~~e~~~~~~~ae~~~~~~~~~w~~~e~~~~~~~~~~~~~~~~~~~~ 587 (720)
==+..|+-.++.-+.|...|.|+.+.+-. +.=.+.|++.+...|.+.-.+|...... .|-+.
T Consensus 324 a~~~~m~~a~~~~rkAQ~rwD~v~AenS~-GfHnP~ea~riL~~a~~~a~~a~~~L~~-----------------~la~~ 385 (439)
T 3ubr_A 324 ATEAEMKPILTDIRHAQWRWDLAIASHGV-AAHAPEEALRVLGTSVNKAADARVKLAQ-----------------LLAKK 385 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSTTH-HHHCHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhc
Confidence 34777888888889999999999887531 1225778898888888888888665433 34577
Q ss_pred ccc--CcCCCCCCcchHHHhhch
Q 005002 588 GLD--GLFKDTSPEESAEQAANM 608 (720)
Q Consensus 588 ~~~--~~~~~~~~~~~~e~~~~~ 608 (720)
|.. --++|+|..+.+.++-+|
T Consensus 386 g~~~~~~~pd~stk~kaq~~~g~ 408 (439)
T 3ubr_A 386 GLTDPVAIPDISTKAKAQAVLGM 408 (439)
T ss_dssp TCCSCCCCCCCCSHHHHHHHHTC
T ss_pred CCCCcccCCCCCcHHHHHHHhCC
Confidence 766 356788888887776443
No 324
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=21.81 E-value=1.3e+02 Score=26.80 Aligned_cols=61 Identities=8% Similarity=0.209 Sum_probs=48.7
Q ss_pred eEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEEE
Q 005002 271 IRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLY 335 (720)
Q Consensus 271 iR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL~ 335 (720)
|..+.+|....-.||.. .|...++|.|++.|+.-=||.+.+.+-...|+.+......++++
T Consensus 18 Vf~l~FP~ewKt~DI~~----lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ 78 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQ----LFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQ 78 (100)
T ss_dssp EEEEECCTTCCHHHHHH----HHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEE
T ss_pred EEEEeCChhhhhHHHHH----HhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 45557799988888864 56566899999999999999999999999999876445555553
No 325
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.79 E-value=2e+02 Score=24.36 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHh
Q 005002 125 LLKRAQCYKALNRLDFAFRDVNNVLSM------EPNNSSALEVLESVKQSM 169 (720)
Q Consensus 125 y~rrA~Ay~~LGryeeAl~d~ekAL~L------dP~n~~A~~~L~~lk~~l 169 (720)
...+|+=|..+|+|+.|+.+|+.+++. .-+|+..+..-..+++.+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei 65 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEI 65 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHH
Confidence 456777788888888888888877753 123555555444554444
No 326
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.79 E-value=2.2e+02 Score=29.14 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kA 114 (720)
+.|...|+.|+.+ .|..+|-+--+..|.+..|+.+ .++.++|+..+..|
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEI-ln~~~~Ac~lAk~A 200 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI-QNAPEQACHLAKTA 200 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4556666666532 2333333334445555555554 46666666655555
No 327
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=21.77 E-value=77 Score=26.43 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=31.3
Q ss_pred eeeeecCceEEEeccCCCCHHHHHHHHHhhcCCC-CceeEEe
Q 005002 263 VKLVFGDDIRWAQLPVNCSIRLVRDIVRDRFPSL-KGVLVKY 303 (720)
Q Consensus 263 ~K~~~g~DiR~~~~~~~~s~~~L~~~v~~kF~~~-~~~~ikY 303 (720)
|.++.-+=+.|+.++.++|+.+|.+.|...++.. ..+.|++
T Consensus 7 lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 7 IRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 5566666788999999999999999999999732 3344443
No 328
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.74 E-value=2.2e+02 Score=28.91 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
+.|...|+.|+.+ .|..+|-+--+..|.+..|+.+ .++.++|+..+..|+
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEi-ln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEI-ANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4566667776642 2333333444555666666655 577777777666654
No 329
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=21.70 E-value=1.8e+02 Score=30.40 Aligned_cols=60 Identities=20% Similarity=0.360 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHh-hcCCC-----ceEEEEEe
Q 005002 278 VNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEML-FNSQS-----FLRLYIAE 338 (720)
Q Consensus 278 ~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~-~~~~~-----~~rL~v~e 338 (720)
...+|..|.+.+.+.|. ...+.+-++|.+||.|+|....|--|=+.- -+..| +.+|+|+-
T Consensus 265 ~~~~~~a~yd~~~~~~~-~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~ 330 (341)
T 2dyb_A 265 STPLLKDLLELTRREFQ-REDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQ 330 (341)
T ss_dssp CCCCHHHHHHHHHHHHT-CSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEE
T ss_pred CCcchhhhhhhhhhhcC-CCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEe
Confidence 34578899999999984 568999999999999999988665554432 23344 35566654
No 330
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=21.57 E-value=60 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.5
Q ss_pred cCCCCceeEEeeCCCCCeee
Q 005002 293 FPSLKGVLVKYKDQEGDLVT 312 (720)
Q Consensus 293 F~~~~~~~ikYkDedGDlVt 312 (720)
|...++|.|+|.|++|--|.
T Consensus 3 ~~k~~~VtV~YvDe~Gn~La 22 (85)
T 2kvz_A 3 FGKPNQVTVNYLDENNTSIA 22 (85)
T ss_dssp SSCCCCEEEEEECSSSCEEE
T ss_pred cccCCeEEEEEECCCCCCCC
Confidence 55678899999999997654
No 331
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.47 E-value=60 Score=29.66 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhh
Q 005002 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN----NSSALEVLESVKQSMI 170 (720)
Q Consensus 102 gdyeeAI~d~~kALeLdP~~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~LdP~----n~~A~~~L~~lk~~l~ 170 (720)
..|++|..+.++||++|-. |.-..++.-|...+..++++|.+..+ ....|....+++.+|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~ 81 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMK 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 3567777777888777641 33334444455556666677776653 2344444444444443
No 332
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.40 E-value=1.8e+02 Score=31.57 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..-|+..+|++|+.+|+|++|+...+.++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3468889999999999999999999999864
No 333
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=21.26 E-value=2.2e+02 Score=29.25 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
+.|...|+.|+.+ .|..+|-+--+..|.+..|+.+ .++.++|+..+..|+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEi-ln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEI-LNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Confidence 4566677777643 2333334444556666666665 577777777766653
No 334
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=21.19 E-value=1.1e+02 Score=27.32 Aligned_cols=60 Identities=8% Similarity=0.228 Sum_probs=47.0
Q ss_pred eEEEeccCCCCHHHHHHHHHhhcCCCCceeEEeeCCCCCeeeecCchHHHHHHHhhcCCCceEE
Q 005002 271 IRWAQLPVNCSIRLVRDIVRDRFPSLKGVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRL 334 (720)
Q Consensus 271 iR~~~~~~~~s~~~L~~~v~~kF~~~~~~~ikYkDedGDlVtitsd~dl~~A~~~~~~~~~~rL 334 (720)
|..+.+|....-.||. +.|...++|.|++.|+.-=||.+.+.+-.+.|+.+......++|
T Consensus 8 V~~l~FP~ewKt~Di~----~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i 67 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLY----QLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRI 67 (101)
T ss_dssp EEEEECCTTCCHHHHH----HHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCC
T ss_pred EEEEeCChhhhhHHHH----HHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEE
Confidence 3344678888888875 56777789999999999999999999999999997644444443
No 335
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.00 E-value=2.3e+02 Score=29.23 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 005002 65 EGAMLKYEKALKL----LPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLAL 115 (720)
Q Consensus 65 eeAl~~Y~kAL~L----~P~~~~d~a~l~~NrAa~y~kL~~gdyeeAI~d~~kAL 115 (720)
+.|...|+.|+.+ .|..+|-+--+..|.+..|+.+ .++.++|+..+..|+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEI-ln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEI-LNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4455666666532 2322323334445555555554 466666666655553
No 336
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.92 E-value=1.3e+02 Score=25.97 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=29.2
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005002 42 AMFISMSQELKEEGNKLFQKRDHEGAMLKYEKAL 75 (720)
Q Consensus 42 ~~lik~A~~lKeeGn~lfk~GdyeeAl~~Y~kAL 75 (720)
..++++|..+.+.|..++.+||+..|+..+.-|-
T Consensus 29 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 29 EGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567999999999999999999999998876654
No 337
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=20.73 E-value=87 Score=31.75 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHhh---cccccccc-ccccccHHHHHHHHHHHHhhhhhcc-CCCccccchhhhccc
Q 005002 638 CLEVAVEKFELAGASPTDIAVMIKN---HCSNETAL-EGFGFKIDEIVQAWNEMYDAKRWQI-GVPSFRLEPLFRRRV 710 (720)
Q Consensus 638 ~l~~avekf~~ag~~~~di~~~~kn---h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 710 (720)
.+.+|+.-.+..|+++.||..+++. |..+--.. +-.| +|-++...+.+|.. . |.|-|+--|++|+.+
T Consensus 214 ~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D~~G--ld~~~~~~~~l~~~----~~~~~~~~~~~~l~~~~ 285 (302)
T 1f0y_A 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG--LDTTKFIVDGWHEM----DAENPLHQPSPSLNKLV 285 (302)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHC--HHHHHHHHHHHHHT----TTTCGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHH----ccCCCccCcCHHHHHHH
Confidence 3678888899999999999999973 33221111 1133 67788888888762 2 556677778888765
No 338
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=20.56 E-value=1.9e+02 Score=31.70 Aligned_cols=31 Identities=10% Similarity=-0.065 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005002 121 YSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151 (720)
Q Consensus 121 ~~KAy~rrA~Ay~~LGryeeAl~d~ekAL~L 151 (720)
..-|+..+|++|+.+++|++|+...+.++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3467888899999999999999999998875
Done!