Your job contains 1 sequence.
>005003
MFVLIFFFFWIFRILVPANGLALFLQMEASSACLVGNILTTHKTKTNLSKDFHGRHLLFN
SSFRSLEKKPKVAVVKASLSQKQHEGRRGFLKKLVGNVGVGTALLGSGKAYADEQGVSSS
RMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFR
EKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFG
QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG
TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA
VGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR
QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR
GKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTL
VPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQI
TGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY
EIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRVPPAVPAPLSVSV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005003
(720 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2052806 - symbol:VAR2 "VARIEGATED 2" species:3... 2634 5.6e-274 1
TAIR|locus:2009235 - symbol:FTSH8 "FTSH protease 8" speci... 2616 4.5e-272 1
UNIPROTKB|Q55700 - symbol:ftsH2 "ATP-dependent zinc metal... 1701 4.1e-175 1
TAIR|locus:2011952 - symbol:FTSH1 "FTSH protease 1" speci... 1231 1.4e-131 2
TAIR|locus:2157637 - symbol:VAR1 "VARIEGATED 1" species:3... 1227 4.2e-130 2
UNIPROTKB|P37476 - symbol:ftsH "ATP-dependent zinc metall... 1194 8.1e-125 2
TIGR_CMR|BA_0064 - symbol:BA_0064 "cell division protein ... 1178 8.2e-123 2
UNIPROTKB|Q3AFJ8 - symbol:ftsH "ATP-dependent zinc metall... 1165 1.1e-120 2
TIGR_CMR|CHY_0214 - symbol:CHY_0214 "cell division protei... 1165 1.1e-120 2
UNIPROTKB|P0AAI3 - symbol:ftsH species:83333 "Escherichia... 1130 1.2e-117 2
TIGR_CMR|SO_1197 - symbol:SO_1197 "ATP-dependent metallop... 1113 2.0e-117 2
TIGR_CMR|GSU_1809 - symbol:GSU_1809 "cell division protei... 1136 3.3e-117 2
TIGR_CMR|NSE_0423 - symbol:NSE_0423 "ATP-dependent metall... 1107 4.2e-117 2
TIGR_CMR|CPS_3452 - symbol:CPS_3452 "ATP-dependent metall... 1127 6.8e-117 2
TIGR_CMR|CBU_1352 - symbol:CBU_1352 "ATP-dependent metall... 1115 3.3e-115 2
UNIPROTKB|Q9KU86 - symbol:ftsH "ATP-dependent zinc metall... 1100 2.0e-111 1
TIGR_CMR|VC_0637 - symbol:VC_0637 "cell division protein ... 1100 2.0e-111 1
UNIPROTKB|Q5LNU8 - symbol:ftsH "ATP-dependent zinc metall... 1071 9.0e-111 2
TIGR_CMR|SPO_3105 - symbol:SPO_3105 "ATP-dependent metall... 1071 9.0e-111 2
TIGR_CMR|DET_0391 - symbol:DET_0391 "ATP-dependent metall... 1088 3.8e-110 1
UNIPROTKB|Q2GFA1 - symbol:ftsH "ATP-dependent zinc metall... 1077 5.5e-109 1
TIGR_CMR|ECH_1098 - symbol:ECH_1098 "ATP-dependent metall... 1077 5.5e-109 1
UNIPROTKB|P0C5C0 - symbol:ftsH "ATP-dependent zinc metall... 1060 3.5e-107 1
UNIPROTKB|Q2GIT4 - symbol:ftsH "ATP-dependent zinc metall... 1054 1.5e-106 1
TIGR_CMR|APH_1179 - symbol:APH_1179 "ATP-dependent metall... 1054 1.5e-106 1
TIGR_CMR|GSU_1180 - symbol:GSU_1180 "cell division protei... 1003 1.4e-103 2
TIGR_CMR|CJE_1259 - symbol:CJE_1259 "cell division protei... 1025 1.8e-103 1
TAIR|locus:2163736 - symbol:FTSH11 "FTSH protease 11" spe... 968 1.2e-100 2
DICTYBASE|DDB_G0272120 - symbol:rcaA "peptidase M41, FtsH... 974 1.6e-100 2
FB|FBgn0036702 - symbol:CG6512 species:7227 "Drosophila m... 990 9.1e-100 1
CGD|CAL0000075 - symbol:AFG3 species:5476 "Candida albica... 664 1.4e-99 2
UNIPROTKB|Q5AJC2 - symbol:AFG3 "Putative uncharacterized ... 664 1.4e-99 2
CGD|CAL0004443 - symbol:orf19.2057 species:5476 "Candida ... 945 4.7e-99 2
ASPGD|ASPL0000072959 - symbol:AN4557 species:162425 "Emer... 964 6.0e-99 2
TAIR|locus:2075581 - symbol:ftsh7 "FTSH protease 7" speci... 950 1.1e-97 2
WB|WBGene00004978 - symbol:spg-7 species:6239 "Caenorhabd... 949 2.3e-97 2
DICTYBASE|DDB_G0284249 - symbol:DDB_G0284249 "peptidase M... 967 2.5e-97 1
SGD|S000004695 - symbol:YTA12 "Component of the mitochond... 964 5.2e-97 1
UNIPROTKB|F1RVK1 - symbol:YME1L1 "Uncharacterized protein... 945 6.0e-97 2
UNIPROTKB|Q96TA2 - symbol:YME1L1 "ATP-dependent zinc meta... 944 7.7e-97 2
TAIR|locus:2154568 - symbol:ftsh9 "FTSH protease 9" speci... 937 1.3e-96 2
TAIR|locus:2057386 - symbol:ftsh4 "FTSH protease 4" speci... 959 1.8e-96 1
UNIPROTKB|A6QR12 - symbol:YME1L1 "Uncharacterized protein... 935 2.6e-96 2
UNIPROTKB|F1NTK8 - symbol:YME1L1 "Uncharacterized protein... 937 4.2e-96 2
POMBASE|SPBC543.09 - symbol:yta12 "mitochondrial m-AAA pr... 952 9.7e-96 1
UNIPROTKB|F1LN92 - symbol:Afg3l2 "Protein Afg3l2" species... 948 2.6e-95 1
MGI|MGI:1351651 - symbol:Yme1l1 "YME1-like 1 (S. cerevisi... 947 3.3e-95 1
UNIPROTKB|G3V886 - symbol:Yme1l1 "YME1-like 1 (S. cerevis... 947 3.3e-95 1
UNIPROTKB|F1PRV6 - symbol:YME1L1 "Uncharacterized protein... 945 5.3e-95 1
MGI|MGI:1916847 - symbol:Afg3l2 "AFG3(ATPase family gene ... 945 5.3e-95 1
TAIR|locus:2066128 - symbol:ftsh3 "FTSH protease 3" speci... 945 5.3e-95 1
UNIPROTKB|Q9Y4W6 - symbol:AFG3L2 "AFG3-like protein 2" sp... 944 6.8e-95 1
UNIPROTKB|E1BFQ0 - symbol:E1BFQ0 "Uncharacterized protein... 942 1.1e-94 1
UNIPROTKB|E1BZ74 - symbol:AFG3L2 "Uncharacterized protein... 941 1.4e-94 1
UNIPROTKB|F1N9N5 - symbol:AFG3L2 "Uncharacterized protein... 941 1.4e-94 1
UNIPROTKB|E2QYF3 - symbol:AFG3L2 "Uncharacterized protein... 940 1.8e-94 1
ZFIN|ZDB-GENE-070912-46 - symbol:afg3l2 "AFG3 ATPase fami... 940 1.8e-94 1
UNIPROTKB|F1P519 - symbol:YME1L1 "Uncharacterized protein... 937 3.8e-94 1
SGD|S000000819 - symbol:AFG3 "Component, with Yta12p, of ... 937 3.8e-94 1
UNIPROTKB|Q2KJI7 - symbol:AFG3L2 "AFG3-like protein 2" sp... 934 7.8e-94 1
UNIPROTKB|J9NRR9 - symbol:YME1L1 "Uncharacterized protein... 934 7.8e-94 1
MGI|MGI:1928277 - symbol:Afg3l1 "AFG3(ATPase family gene ... 934 7.8e-94 1
RGD|620764 - symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" ... 934 7.8e-94 1
FB|FBgn0034792 - symbol:CG3499 species:7227 "Drosophila m... 932 1.3e-93 1
TAIR|locus:2025052 - symbol:ftsh10 "FTSH protease 10" spe... 932 1.3e-93 1
FB|FBgn0024992 - symbol:CG2658 species:7227 "Drosophila m... 901 3.8e-93 2
RGD|1309722 - symbol:Afg3l1 "AFG3(ATPase family gene 3)-l... 927 4.3e-93 1
ASPGD|ASPL0000029469 - symbol:AN5588 species:162425 "Emer... 924 9.0e-93 1
ZFIN|ZDB-GENE-070410-25 - symbol:yme1l1b "YME1-like 1b" s... 917 5.0e-92 1
WB|WBGene00010842 - symbol:ymel-1 species:6239 "Caenorhab... 916 6.3e-92 1
ZFIN|ZDB-GENE-091113-41 - symbol:yme1l1a "YME1-like 1a" s... 906 7.3e-91 1
GENEDB_PFALCIPARUM|PF14_0616 - symbol:PF14_0616 "i-AAA pr... 900 3.1e-90 1
UNIPROTKB|Q8IKI9 - symbol:PF14_0616 "ATP-dependent protea... 900 3.1e-90 1
UNIPROTKB|A7E2Z6 - symbol:SPG7 "SPG7 protein" species:991... 866 1.2e-89 2
CGD|CAL0002950 - symbol:YME1 species:5476 "Candida albica... 891 2.8e-89 1
GENEDB_PFALCIPARUM|PFL1925w - symbol:PFL1925w "cell divis... 886 9.6e-89 1
UNIPROTKB|Q8I526 - symbol:PFL1925w "Cell division protein... 886 9.6e-89 1
MGI|MGI:2385906 - symbol:Spg7 "spastic paraplegia 7 homol... 850 1.2e-87 2
ZFIN|ZDB-GENE-030131-5391 - symbol:spg7 "spastic parapleg... 844 1.2e-87 2
UNIPROTKB|E2R4F3 - symbol:SPG7 "Uncharacterized protein" ... 845 1.9e-87 2
UNIPROTKB|Q9UQ90 - symbol:SPG7 "Paraplegin" species:9606 ... 844 3.1e-87 2
SGD|S000006228 - symbol:YME1 "Catalytic subunit of the mi... 869 6.0e-87 1
UNIPROTKB|I3LLQ8 - symbol:AFG3L2 "Uncharacterized protein... 868 7.7e-87 1
UNIPROTKB|F1NXP0 - symbol:SPG7 "Uncharacterized protein" ... 834 2.1e-86 2
DICTYBASE|DDB_G0293388 - symbol:DDB_G0293388 "ATP-depende... 844 2.7e-84 1
DICTYBASE|DDB_G0267492 - symbol:DDB_G0267492 "peptidase M... 840 7.2e-84 1
POMBASE|SPCC965.04c - symbol:SPCC965.04c "mitochondrial i... 828 1.3e-82 1
RGD|727940 - symbol:Spg7 "spastic paraplegia 7 homolog (h... 576 2.5e-81 2
UNIPROTKB|Q7TT47 - symbol:Spg7 "Paraplegin" species:10116... 576 2.5e-81 2
WB|WBGene00021425 - symbol:ppgn-1 species:6239 "Caenorhab... 800 1.2e-79 1
TAIR|locus:2138146 - symbol:FtsHi1 "FTSH inactive proteas... 733 2.5e-75 2
TAIR|locus:2094892 - symbol:EMB2083 "embryo defective 208... 660 7.7e-68 2
TIGR_CMR|CJE_1085 - symbol:CJE_1085 "cell division protei... 644 2.3e-66 2
TAIR|locus:2076929 - symbol:AT3G02450 species:3702 "Arabi... 667 1.5e-65 1
TAIR|locus:2174819 - symbol:EMB3144 "EMBRYO DEFECTIVE 314... 617 8.8e-63 2
TIGR_CMR|CPS_1798 - symbol:CPS_1798 "ATP-dependent peptid... 586 8.7e-56 1
TIGR_CMR|CPS_1795 - symbol:CPS_1795 "ATP-dependent peptid... 549 8.2e-52 1
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl... 537 9.2e-52 1
WB|WBGene00018991 - symbol:F56F11.4 species:6239 "Caenorh... 493 4.2e-47 1
GENEDB_PFALCIPARUM|PF13_0063 - symbol:PF13_0063 "26S prot... 490 8.8e-47 1
WARNING: Descriptions of 612 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2052806 [details] [associations]
symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
"thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
"chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA;TAS]
[GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
process" evidence=IDA] [GO:0072593 "reactive oxygen species
metabolic process" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
catabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0010206
"photosystem II repair" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
Genevestigator:O80860 Uniprot:O80860
Length = 695
Score = 2634 (932.3 bits), Expect = 5.6e-274, P = 5.6e-274
Identities = 535/683 (78%), Positives = 573/683 (83%)
Query: 27 MEASSACLVGNILTTHKT-KTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLS-QKQH 84
M ASSACLVGN L+ + T K LSK F GR +SF S+ + KV VVKASL +K+
Sbjct: 1 MAASSACLVGNGLSVNTTTKQRLSKHFSGRQ----TSFSSVIRTSKVNVVKASLDGKKKQ 56
Query: 85 EGRRGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFEN 144
EGRR FLK L+GN GVG L+ SGKA ADEQGVSSSRMSYSRFLEYLDKDRV KVDL+EN
Sbjct: 57 EGRRDFLKILLGNAGVG--LVASGKANADEQGVSSSRMSYSRFLEYLDKDRVNKVDLYEN 114
Query: 145 GTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIG 204
GTIAIVEA+SPELGNRV+RVRVQLPGLSQELLQK R KNIDFAAHNAQED GS+LFNLIG
Sbjct: 115 GTIAIVEAVSPELGNRVERVRVQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSVLFNLIG 174
Query: 205 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDE 264
N QSKAKFQMEPNTGVTFDDVAGVDE
Sbjct: 175 NLAFPALLIGGLFLLSRRSGGGMGGPGGPGNPLQFGQSKAKFQMEPNTGVTFDDVAGVDE 234
Query: 265 AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324
AKQDFMEVVEFLKKPERFTA+GA+IPKGVLL+GPPGTGKTLLAKAIAGEAGVPFFSISGS
Sbjct: 235 AKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGS 294
Query: 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLL 384
EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV NDEREQTLNQLL
Sbjct: 295 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 354
Query: 385 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 444
TEMDGFEGNTG+IV+AATNRADILDSALLRPGRFDRQV+VDVPD++GRT+ILKVH NKK
Sbjct: 355 TEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKK 414
Query: 445 FDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGT 504
FD DVSL++IAMRTPGFSG GRR + +ISSKEIDDSIDRIVAGMEGT
Sbjct: 415 FDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGT 474
Query: 505 VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 564
VMTDGKSKSLVAYHEVGHA+CGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQ
Sbjct: 475 VMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQ 534
Query: 565 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDG 624
QLFARIVGGLGGRAAEE+IFG+ EVTTGA GDLQQITGLA+QMVTTFGMS+IGPWSLMD
Sbjct: 535 QLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMSDIGPWSLMDS 594
Query: 625 SQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK 684
S DVIMRMMARNSMSEKLAEDID+AVK+LSD AYEIALS I+NNREA+DK+VEVLLEK
Sbjct: 595 SAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEK 654
Query: 685 ETMSGDEFRAILSEFVEIPAENR 707
ET+ GDEFRAILSEF EIP ENR
Sbjct: 655 ETIGGDEFRAILSEFTEIPPENR 677
>TAIR|locus:2009235 [details] [associations]
symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
Genevestigator:Q8W585 Uniprot:Q8W585
Length = 685
Score = 2616 (925.9 bits), Expect = 4.5e-272, P = 4.5e-272
Identities = 534/683 (78%), Positives = 562/683 (82%)
Query: 27 MEASSACLVGNILTTHKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLSQKQHEG 86
M ASSACL+GN L+ + TK K L++ KV VVKASL +K+HEG
Sbjct: 1 MAASSACLLGNGLSVYTTKQRFQK-------------LGLDRTSKVTVVKASLDEKKHEG 47
Query: 87 RRGFLKKLVGNVGVGTALLGSGKAYADEQG--VSSSRMSYSRFLEYLDKDRVKKVDLFEN 144
RRGF K L+GN G LL SG A ADEQG VSSSRMSYSRFLEYLDK RV+KVDL+EN
Sbjct: 48 RRGFFKLLLGNAAAGVGLLASGNANADEQGQGVSSSRMSYSRFLEYLDKGRVEKVDLYEN 107
Query: 145 GTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIG 204
GTIAIVEA+SPELGNR+QRVRVQLPGLSQELLQK R KNIDFAAHNAQED GS + NLIG
Sbjct: 108 GTIAIVEAVSPELGNRIQRVRVQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSPILNLIG 167
Query: 205 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDE 264
N QSKAKFQMEPNTGVTFDDVAGVDE
Sbjct: 168 NLAFPVILIGGLFLLSRRSSGGMGGPGGPGFPLQIGQSKAKFQMEPNTGVTFDDVAGVDE 227
Query: 265 AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324
AKQDFMEVVEFLKKPERFTA+GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS
Sbjct: 228 AKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 287
Query: 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLL 384
EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV NDEREQTLNQLL
Sbjct: 288 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 347
Query: 385 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 444
TEMDGFEGNTG+IV+AATNRADILDSALLRPGRFDRQV+VDVPD++GRT+ILKVH NKK
Sbjct: 348 TEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKK 407
Query: 445 FDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGT 504
F++ VSL+VIAMRTPGFSG GRRGK AISSKEIDDSIDRIVAGMEGT
Sbjct: 408 FESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGT 467
Query: 505 VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 564
VMTDGKSKSLVAYHEVGHAICGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQ
Sbjct: 468 VMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQ 527
Query: 565 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDG 624
QLFARIVGGLGGRAAEEVIFGE EVTTGA DLQQITGLAKQMVTTFGMSEIGPWSLMD
Sbjct: 528 QLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMSEIGPWSLMDS 587
Query: 625 SQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK 684
S+ DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQIRNNREA+DKIVE+LLEK
Sbjct: 588 SEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEK 647
Query: 685 ETMSGDEFRAILSEFVEIPAENR 707
ETMSGDEFRAILSEF EIP ENR
Sbjct: 648 ETMSGDEFRAILSEFTEIPPENR 670
>UNIPROTKB|Q55700 [details] [associations]
symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
[GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
"thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
OMA:NTASTRM Uniprot:Q55700
Length = 627
Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
Identities = 345/614 (56%), Positives = 434/614 (70%)
Query: 96 GNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISP 155
G+ G A LGS A ++RM+Y RFLEY+D R+ VDL+ENG AIV+ P
Sbjct: 25 GSFGGADANLGSNTA--------NTRMTYGRFLEYVDAGRITSVDLYENGRTAIVQVSDP 76
Query: 156 ELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXX 215
E+ +R R RV LP + EL+ + R+ NI +H + + +++ +GN
Sbjct: 77 EV-DRTLRSRVDLPTNAPELIARLRDSNIRLDSHPVRNNG--MVWGFVGNLIFPVLLIAS 133
Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF 275
+SKA+FQM+ TGV FDDVAG+DEAK++ EVV F
Sbjct: 134 LFFLFRRSSNMPGGPGQAMNFG---KSKARFQMDAKTGVMFDDVAGIDEAKEELQEVVTF 190
Query: 276 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 335
LK+PERFTA+GA+IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA
Sbjct: 191 LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 250
Query: 336 SRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG 395
SRVRDLFKKAKENAPC++F+DEIDAV NDEREQTLNQLLTEMDGFEGNTG
Sbjct: 251 SRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTG 310
Query: 396 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA 455
II+IAATNR D+LDSAL+RPGRFDRQV VD PD GR EIL+VH NKK +VS+D IA
Sbjct: 311 IIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIA 370
Query: 456 MRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLV 515
RTPGFSG RR K+AI+ EIDD++DR+VAGMEGT + D KSK L+
Sbjct: 371 RRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVAGMEGTPLVDSKSKRLI 430
Query: 516 AYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLG 575
AYHEVGHAI GTL HDPVQKVTL+PRGQA+GLTWF P+++ L +K QL ARI G +G
Sbjct: 431 AYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQGLTWFTPNEEQGLTTKAQLMARIAGAMG 490
Query: 576 GRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMR-- 633
GRAAEE +FG+ EVTTGA GDLQQ+T +A+QMVT FGMS +GP SL S G+V +
Sbjct: 491 GRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSNLGPISLE--SSGGEVFLGGG 548
Query: 634 MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFR 693
+M R+ SE++A IDA V++L+++ +++A ++ RE +D++V++L+EKET+ G+EFR
Sbjct: 549 LMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFR 608
Query: 694 AILSEFVEIPAENR 707
I++E+ E+P + +
Sbjct: 609 QIVAEYAEVPVKEQ 622
>TAIR|locus:2011952 [details] [associations]
symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
Length = 716
Score = 1231 (438.4 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 253/473 (53%), Positives = 331/473 (69%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SK+KFQ P TGV+F DVAG D+AK + EVV+FLK P+++TA+GA+IPKG LLVGPPG
Sbjct: 246 RSKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPG 305
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK APCIVF+DEIDA
Sbjct: 306 TGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 365
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDR
Sbjct: 366 VGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDR 425
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVTVD PD+ GR +IL+VH K DV D +A RTPGF+G RR
Sbjct: 426 QVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARR 485
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
IS EI D+++RI+AG E V+++ K K LVAYHE GHA+ G L P +DPV K+
Sbjct: 486 ELKEISKDEISDALERIIAGPEKKNAVVSEEK-KRLVAYHEAGHALVGALMPEYDPVAKI 544
Query: 539 TLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
+++PRGQA GLT+F PS++ L S+ L ++ LGGR AEEVIFG+ VTTGA+
Sbjct: 545 SIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASN 604
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAV 652
D Q++ +A+QM+ FG S+ IG ++ G G+ M +M ++ S A+ +DA V
Sbjct: 605 DFMQVSRVARQMIERFGFSKKIGQVAV--GGPGGNPFMGQQMSSQKDYSMATADIVDAEV 662
Query: 653 KRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 705
+ L ++AY+ A I + + + K+ ++L+EKET+ G+EF +S F++ AE
Sbjct: 663 RELVEKAYKRATEIITTHIDILHKLAQLLIEKETVDGEEF---MSLFIDGQAE 712
Score = 80 (33.2 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 120 SRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKF 179
S+ YS FL + K +V++V ++G++ + A+ NR R V +P +L+
Sbjct: 132 SQWRYSEFLNAVKKGKVERVRFSKDGSVVQLTAVD----NR--RASVIVPN-DPDLIDIL 184
Query: 180 REKNIDFAAHNAQEDSGSLLFNLIGN 205
+D + E SG+ LF +IGN
Sbjct: 185 AMNGVDISVSEG-ESSGNDLFTVIGN 209
>TAIR|locus:2157637 [details] [associations]
symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA;IDA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
"photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
Uniprot:Q9FH02
Length = 704
Score = 1227 (437.0 bits), Expect = 4.2e-130, Sum P(2) = 4.2e-130
Identities = 254/473 (53%), Positives = 328/473 (69%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SK+KFQ P TGVTF DVAG D+AK + EVV+FLK P+++TA+GA+IPKG LLVGPPG
Sbjct: 234 RSKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPG 293
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+AGEAGVPFFS + SEFVE+FVGVGASRVRDLF+KAK APCIVF+DEIDA
Sbjct: 294 TGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA 353
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQT+NQLLTEMDGF GN+G+IV+AATNR D+LDSALLRPGRFDR
Sbjct: 354 VGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDR 413
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVTVD PD+ GR +ILKVH K DV + +A RTPGF+G RR
Sbjct: 414 QVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARR 473
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
IS EI D+++RI+AG E V+++ K K LVAYHE GHA+ G L P +DPV K+
Sbjct: 474 ELKEISKDEISDALERIIAGPEKKNAVVSEEK-KRLVAYHEAGHALVGALMPEYDPVAKI 532
Query: 539 TLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
+++PRGQA GLT+F PS++ L S+ L ++ LGGR AEEVIFG+ VTTGA+
Sbjct: 533 SIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASN 592
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAV 652
D Q++ +A+QMV FG S+ IG ++ G G+ + M ++ S A+ +DA V
Sbjct: 593 DFMQVSRVARQMVERFGFSKKIGQVAV--GGAGGNPFLGQSMSSQKDYSMATADVVDAEV 650
Query: 653 KRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 705
+ L ++AY A I + + K+ ++L+EKET+ G+EF +S F++ AE
Sbjct: 651 RELVEKAYVRAKEIITTQIDILHKLAQLLIEKETVDGEEF---MSLFIDGQAE 700
Score = 70 (29.7 bits), Expect = 4.2e-130, Sum P(2) = 4.2e-130
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 124 YSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKN 183
YS FL + K +V++V ++G++ + A+ NR R V +P +L+
Sbjct: 126 YSEFLNAVKKGKVERVKFSKDGSVLQLTAVD----NR--RATVIVPN-DPDLIDILAMNG 178
Query: 184 IDFAAHNAQEDSGSLLFNLIGN 205
+D + ++ + G+ LF+ IGN
Sbjct: 179 VDISV--SEGEGGNGLFDFIGN 198
>UNIPROTKB|P37476 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IDA] [GO:0030428 "cell septum"
evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
Uniprot:P37476
Length = 637
Score = 1194 (425.4 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 250/471 (53%), Positives = 317/471 (67%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKAK E V F DVAG DE KQ+ +EVVEFLK P +F +GARIPKGVLLVGPPG
Sbjct: 145 KSKAKLYTEEKKRVKFKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPG 204
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEAGVPFFSISGS+FVEMFVGVGASRVRDLF+ AK+NAPC++F+DEIDA
Sbjct: 205 TGKTLLAKACAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDA 264
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGF N GII+IAATNRADILD ALLRPGRFDR
Sbjct: 265 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDR 324
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
Q+TVD PD+ GR +LKVH NK D V+L IAMRTPGFSG R+
Sbjct: 325 QITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQ 384
Query: 481 GKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVT 539
K I +++ID++ DR++AG + + + K +++VAYHE GH + G + D V KVT
Sbjct: 385 NKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVT 444
Query: 540 LVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQ 599
+VPRGQA G +P +D +K +L +IVG LGGR AEE+IFGE V+TGA D Q+
Sbjct: 445 IVPRGQAGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGE--VSTGAHNDFQR 502
Query: 600 ITGLAKQMVTTFGMSE-IGPWSLMDG-SQSGDVIMRMMARNSM--SEKLAEDIDAAVKRL 655
T +A++MVT FGMSE +GP L G SQ G V + N S+++A +ID ++R+
Sbjct: 503 ATNIARRMVTEFGMSEKLGP--LQFGQSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRI 560
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 706
YE A + NR+ ++ I + LL+ ET+ ++ + ++ +P N
Sbjct: 561 IKECYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLIDHGT-LPERN 610
Score = 53 (23.7 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 26/95 (27%), Positives = 39/95 (41%)
Query: 110 AYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQ 167
+Y + MSYS F++ LD +V V + + V + +L N + Q
Sbjct: 23 SYFQTSNPKTENMSYSTFIKNLDDGKVDSVSV---QPVRGVYEVKGQLKNYDKDQYFLTH 79
Query: 168 LP-GLSQELLQKFRE-KNIDFAAHNAQEDSGSLLF 200
+P G + Q F K D AQE SG + F
Sbjct: 80 VPEGKGAD--QIFNALKKTDVKVEPAQETSGWVTF 112
>TIGR_CMR|BA_0064 [details] [associations]
symbol:BA_0064 "cell division protein FtsH" species:198094
"Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
Uniprot:Q81VX5
Length = 633
Score = 1178 (419.7 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
Identities = 241/468 (51%), Positives = 314/468 (67%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKAK + V F DVAG DE KQ+ +EVVEFLK P +F +GARIPKGVLLVGPPG
Sbjct: 146 KSKAKLYNDEKKKVRFRDVAGADEEKQELVEVVEFLKDPRKFAEVGARIPKGVLLVGPPG 205
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+AGEAGVPFFSISGS+FVEMFVGVGASRVRDLF+ AK+NAPCI+F+DEIDA
Sbjct: 206 TGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDA 265
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGF N GII+IAATNR DILD ALLRPGRFDR
Sbjct: 266 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPALLRPGRFDR 325
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
Q+TVD PD+ GR +LKVH NK D +++L IA RTPGFSG R+
Sbjct: 326 QITVDRPDVNGREAVLKVHARNKPLDENINLRAIATRTPGFSGADLENLLNEAALVAARQ 385
Query: 481 GKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K I +ID++ DR++AG + V+++ K +++VA+HE GH + G + D V KV
Sbjct: 386 DKKKIDMSDIDEATDRVIAGPAKKSRVISE-KERNIVAFHEAGHTVIGVVLDEADVVHKV 444
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T+VPRGQA G +P +D ++K +L +I G LGGR AEE++FGE V+TGA D Q
Sbjct: 445 TIVPRGQAGGYAVMLPKEDRYFMTKPELLDKITGLLGGRVAEEIVFGE--VSTGAHNDFQ 502
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMR--MMARNSMSEKLAEDIDAAVKRL 655
+ TG+A++MVT FGMS+ +GP SQ G V + + + S+ +A +ID ++ +
Sbjct: 503 RATGIARRMVTEFGMSDKLGPMQF-GSSQGGQVFLGRDFHSEQNYSDAIAHEIDMEMQTI 561
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 703
Y A + +NR+ +D I + LLE ET+ ++ L ++ +P
Sbjct: 562 MKECYARAKQILTDNRDKLDLIAKTLLEVETLDAEQINH-LCDYGRLP 608
Score = 50 (22.7 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 110 AYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLF-ENGTIAIVEAISPELGNRVQRVR-VQ 167
+Y + ++ +SY +F+ L+K V+ V L +NG + E + + N Q + V
Sbjct: 23 SYFNGSTQKTTSVSYDKFITKLEKGEVRNVQLQPKNG---VFE-VKGQFNNSSQGEQFVT 78
Query: 168 LPGLSQELLQKFREK--NIDFAAHNAQEDSGSLLF 200
++EL +K +K + A+E S + F
Sbjct: 79 YAPNTEELQKKINDKAQGAEVKYQPAEETSAWVTF 113
>UNIPROTKB|Q3AFJ8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
Length = 619
Score = 1165 (415.2 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 238/462 (51%), Positives = 315/462 (68%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+AK + VTF DVAG+DE K++ E+VEFLK P ++ +GARIPKGVLL G PG
Sbjct: 142 KSRAKLHTDEKKRVTFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQPG 201
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEAGVPFFSISGS+FVEMFVGVGASRVRDLF++AK+NAPCIVF+DEIDA
Sbjct: 202 TGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDA 261
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGF N GII+IAATNR DILD ALLRPGRFDR
Sbjct: 262 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDR 321
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
+ VD PDI GR EILKVH K DV LDV+A RTPGF+G RR
Sbjct: 322 HIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANMVNEAALLAARR 381
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K I+ +E++++I+R++AG E V+++ + K LVAYHE GHA+ G L P DPV K+
Sbjct: 382 NKKVINMEEMEEAIERVIAGPEKKSKVISE-REKRLVAYHEAGHAMVGYLLPHTDPVHKI 440
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
+++PRG+A G T +P +D + ++K QL I LGGR AE ++ +++TGA DL+
Sbjct: 441 SIIPRGRAGGYTLLLPEEDRSYMTKSQLLDEITMLLGGRVAEALVL--EDISTGARNDLE 498
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARN-SMSEKLAEDIDAAVKRLS 656
+ T A++MV +GMSE +GP + G+++ + R +AR+ + SE++A ID V+++
Sbjct: 499 RATETARRMVMEYGMSEELGPLTFGKGTEAV-FLGRDLARDRNYSEEIAYTIDKEVRKII 557
Query: 657 DRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
D Y A ++ N + + L+E ETM G+EF ++ E
Sbjct: 558 DSCYSRAEEILKKNINVLHLVATKLMEVETMEGEEFEKLMKE 599
Score = 43 (20.2 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 111 YADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPG 170
Y+ S + Y F L+K +V V + + TI + + + G R + R L
Sbjct: 24 YSRPSATSIRDLKYDEFYSLLEKGQVASVAIQTDRTINEISGVLRD-GTRF-KTRGPLE- 80
Query: 171 LSQELLQKFREKNI 184
EL + ++ N+
Sbjct: 81 -DAELYKDLKKMNV 93
>TIGR_CMR|CHY_0214 [details] [associations]
symbol:CHY_0214 "cell division protein FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
Uniprot:Q3AFJ8
Length = 619
Score = 1165 (415.2 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 238/462 (51%), Positives = 315/462 (68%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+AK + VTF DVAG+DE K++ E+VEFLK P ++ +GARIPKGVLL G PG
Sbjct: 142 KSRAKLHTDEKKRVTFADVAGIDEVKEELAEIVEFLKNPRKYNELGARIPKGVLLFGQPG 201
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEAGVPFFSISGS+FVEMFVGVGASRVRDLF++AK+NAPCIVF+DEIDA
Sbjct: 202 TGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDA 261
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGF N GII+IAATNR DILD ALLRPGRFDR
Sbjct: 262 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDR 321
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
+ VD PDI GR EILKVH K DV LDV+A RTPGF+G RR
Sbjct: 322 HIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARRTPGFTGADLANMVNEAALLAARR 381
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K I+ +E++++I+R++AG E V+++ + K LVAYHE GHA+ G L P DPV K+
Sbjct: 382 NKKVINMEEMEEAIERVIAGPEKKSKVISE-REKRLVAYHEAGHAMVGYLLPHTDPVHKI 440
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
+++PRG+A G T +P +D + ++K QL I LGGR AE ++ +++TGA DL+
Sbjct: 441 SIIPRGRAGGYTLLLPEEDRSYMTKSQLLDEITMLLGGRVAEALVL--EDISTGARNDLE 498
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARN-SMSEKLAEDIDAAVKRLS 656
+ T A++MV +GMSE +GP + G+++ + R +AR+ + SE++A ID V+++
Sbjct: 499 RATETARRMVMEYGMSEELGPLTFGKGTEAV-FLGRDLARDRNYSEEIAYTIDKEVRKII 557
Query: 657 DRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
D Y A ++ N + + L+E ETM G+EF ++ E
Sbjct: 558 DSCYSRAEEILKKNINVLHLVATKLMEVETMEGEEFEKLMKE 599
Score = 43 (20.2 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 111 YADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPG 170
Y+ S + Y F L+K +V V + + TI + + + G R + R L
Sbjct: 24 YSRPSATSIRDLKYDEFYSLLEKGQVASVAIQTDRTINEISGVLRD-GTRF-KTRGPLE- 80
Query: 171 LSQELLQKFREKNI 184
EL + ++ N+
Sbjct: 81 -DAELYKDLKKMNV 93
>UNIPROTKB|P0AAI3 [details] [associations]
symbol:ftsH species:83333 "Escherichia coli K-12"
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
"proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
[GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
"integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
Length = 644
Score = 1130 (402.8 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 234/462 (50%), Positives = 310/462 (67%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKA+ E TF DVAG DEAK++ E+VE+L++P RF +G +IPKGVL+VGPPG
Sbjct: 136 KSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPG 195
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F++AK+ APCI+F+DEIDA
Sbjct: 196 TGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA 255
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDR
Sbjct: 256 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QV V +PD+RGR +ILKVH D+ +IA TPGFSG R
Sbjct: 316 QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K +S E + + D+I+ G E VMT+ + +S AYHE GHAI G L P HDPV KV
Sbjct: 376 NKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKV 434
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++PRG+A G+T+F+P D S+Q+L ++I GGR AEE+I+G V+TGA+ D++
Sbjct: 435 TIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIK 494
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMAR-NSMSEKLAEDIDAAVKRL 655
T LA+ MVT +G SE +GP L+ + G+V + R +A+ MS++ A ID VK L
Sbjct: 495 VATNLARNMVTQWGFSEKLGP--LLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKAL 552
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
+R Y A + +N + + + + L++ ET+ + +++
Sbjct: 553 IERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMA 594
Score = 49 (22.3 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 92 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVE 151
K L+ + + L+ +++ + + ++ YS FL+ ++ D+V++ + NG +
Sbjct: 3 KNLILWLVIAVVLMSVFQSFGPSES-NGRKVDYSTFLQEVNNDQVREARI--NGRE--IN 57
Query: 152 AISPELGNRVQRVRVQLPGLSQELLQK 178
+ + VQ P L LL K
Sbjct: 58 VTKKDSNRYTTYIPVQDPKLLDNLLTK 84
>TIGR_CMR|SO_1197 [details] [associations]
symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
species:211586 "Shewanella oneidensis MR-1" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
ProtClustDB:CLSK906146 Uniprot:Q8EHM2
Length = 652
Score = 1113 (396.9 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 231/471 (49%), Positives = 315/471 (66%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKAK E TF DVAG DEAK++ E+V++L+ P +F +G RIP GVL+VGPPG
Sbjct: 141 KSKAKLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTKFQKLGGRIPTGVLMVGPPG 200
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKAIAGE+ VPFF+ISGS+FVEMFVGVGASRVRD+F++AK++APCI+F+DEIDA
Sbjct: 201 TGKTLLAKAIAGESKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDA 260
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LDSALLRPGRFDR
Sbjct: 261 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDSALLRPGRFDR 320
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QV V +PD+RGR +ILKVH DV VIA TPGFSG R
Sbjct: 321 QVVVGLPDVRGREQILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARG 380
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
+ + +E + + D+I+ G E VM++ + K + AYHE GHAI G L P HDPV KV
Sbjct: 381 NRRVVGMEEFERAKDKIMMGAERRSMVMSEAE-KEMTAYHEAGHAIVGCLVPEHDPVHKV 439
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++PRG+A G+T+F+P D S+++L ++I GGR AEE+I+G +V+TGA+ D++
Sbjct: 440 TIIPRGRALGVTFFLPEADAISQSRRKLESQISVAYGGRLAEELIYGTEKVSTGASQDIK 499
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMAR-NSMSEKLAEDIDAAVKRL 655
T +A+ MVT +G S+ +GP L+ + G+V + R M + +MS++ A ID VK
Sbjct: 500 YATSIARNMVTQWGFSDKLGP--LLYAEEEGEVFLGRSMGKAKAMSDETATLIDTEVKAF 557
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF-VEIPAE 705
D+ Y A +++N + + + + L++ ET+ + +++ V PA+
Sbjct: 558 IDKNYSRAKQILQDNVDILHSMKDALMKYETIDSLQIDDLMNRREVRQPAD 608
Score = 64 (27.6 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 27/107 (25%), Positives = 46/107 (42%)
Query: 92 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVE 151
K L+ V + L+ + Y+ SS +M YS FL+ + +V V++ + +E
Sbjct: 6 KNLILWVVIAVVLMSVFQGYSPSSS-SSQKMDYSTFLDNVRDGQVATVEVKSDQRT--IE 62
Query: 152 AISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSL 198
S G + + +P Q+L+ K I A+E SG L
Sbjct: 63 G-SKRTGEKFTTI---MPLYDQDLINDLDRKGITMKGQEAEE-SGFL 104
>TIGR_CMR|GSU_1809 [details] [associations]
symbol:GSU_1809 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
Uniprot:Q74C66
Length = 610
Score = 1136 (405.0 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 231/460 (50%), Positives = 305/460 (66%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+AK E VTF+DVAGVDEAK++ E+++FLK P++FT +G RIPKGVLLVGPPG
Sbjct: 137 KSRAKLLTEAQGRVTFEDVAGVDEAKEELEEIIQFLKDPKKFTKLGGRIPKGVLLVGPPG 196
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+AGEAGVPFFSISGS+FVEMFVGVGASRVRDLF + K+NAPCI+F+DEIDA
Sbjct: 197 TGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFVQGKKNAPCIIFIDEIDA 256
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGFE N G+I+IAATNR D+LD ALLRPGRFDR
Sbjct: 257 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDR 316
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QV V PD++GR ILKVH +DV L VIA TPGFSG R+
Sbjct: 317 QVVVPQPDVKGREMILKVHTKKTPLASDVDLGVIARGTPGFSGADLSNVVNEAALLAARK 376
Query: 481 GKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVT 539
K+ + K+ DD+ D+++ G+E M + K AYHE GH + L PG DPV KV+
Sbjct: 377 DKSFVEMKDFDDAKDKVLMGVERRSMVISEEEKKNTAYHEAGHTLVAKLIPGTDPVHKVS 436
Query: 540 LVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQ 599
++PRG+A G+T +P +D +K+ L RI +GGRAAEE+IF E +TTGA D+++
Sbjct: 437 IIPRGRALGVTMQLPIEDKHSYNKESLLNRIAVLMGGRAAEEIIFNE--LTTGAGNDIER 494
Query: 600 ITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDR 658
T +A++MV +GMSE +GP + +S + M + SE A +ID ++++ D
Sbjct: 495 ATEIARKMVCEWGMSEKMGPVTFGKKEESIFLGRDMSMHKNYSEATAVEIDEEIRKIIDG 554
Query: 659 AYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
+Y + N + + L+EKE ++GDE I+ +
Sbjct: 555 SYSRVKQLLNENLSVLHCLATQLIEKENLTGDEVDRIIKD 594
Score = 39 (18.8 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 118 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQ 177
+ R+ YS F+ +D +V V + N I+ S G + + LS++LL+
Sbjct: 31 TQERLGYSDFIAAVDAGKVSTVTVQGN---EIIGKYSD--GKEFRSYKPTDAMLSEKLLE 85
Query: 178 K 178
K
Sbjct: 86 K 86
>TIGR_CMR|NSE_0423 [details] [associations]
symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
Uniprot:Q2GDY7
Length = 636
Score = 1107 (394.7 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
Identities = 225/459 (49%), Positives = 310/459 (67%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKA+ + + VTF DVAG+DEAK++ E+VEFL++P++F +G +IPKG LL+GPPG
Sbjct: 141 KSKARLLSDRSNKVTFHDVAGIDEAKEELAEIVEFLREPKKFQKLGGKIPKGCLLIGPPG 200
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKAIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K+NAPC++F+DEIDA
Sbjct: 201 TGKTLLAKAIAGEAKVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDA 260
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+I+IAATNR D+LD ALLRPGRFDR
Sbjct: 261 VGRHRGVGFGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRFDR 320
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
Q+T+ +PDI GR +IL+VH +V + +IA TPGFSG RR
Sbjct: 321 QITISIPDIAGRQKILEVHLKKIPTAPNVEVSIIARGTPGFSGADLANLVNESALIAARR 380
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K +++++ + + D+I+ GME VM + + K L AYHE GHAI DP+ K
Sbjct: 381 NKKVVTNEDFEYARDKILMGMERKSLVMRE-EEKLLTAYHEAGHAITSLKLEASDPIHKA 439
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++PRG+A GL +P D ++ ++ A ++ +GGRAAE+VIFG+ + T+GAA D++
Sbjct: 440 TIIPRGRALGLVMRLPEHDRVSFTRAKMHADLIVAMGGRAAEQVIFGDDKTTSGAASDIK 499
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSD 657
Q T LA+ MVT +GMSE +GP L+ G Q+ + +S +++ ID+ VK+L
Sbjct: 500 QATHLARSMVTKWGMSEKVGP--LLYGEQNDP------NNHILSIEMSNLIDSEVKQLVT 551
Query: 658 RAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
A + A + N E++ ++ + LLE ET++G E +L
Sbjct: 552 DALKEATKILNENIESLHRVAKALLEYETLTGQELSDLL 590
Score = 67 (28.6 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 116 GVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQEL 175
GV + ++ +S FL+ ++K V+K+ + E I+ V + G Q EL
Sbjct: 32 GVRNEKIQFSEFLDLVEKGEVQKI-VIEGYDISGVL----KSGTHFYTKATQYT----EL 82
Query: 176 LQKFREKNIDFAAHNAQEDSGSLLFNLI 203
+ R+ N+DF + G LLFN++
Sbjct: 83 IPLLRKNNVDFQVASGDSFLG-LLFNIL 109
>TIGR_CMR|CPS_3452 [details] [associations]
symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
Length = 660
Score = 1127 (401.8 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 232/451 (51%), Positives = 307/451 (68%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKA+ E TF DVAG DEAK+D E+V++L++P RF +G RIP G+LLVG PG
Sbjct: 138 KSKARQLSEEQIKTTFADVAGCDEAKEDVAELVDYLREPSRFQKLGGRIPSGILLVGQPG 197
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F++AK+ APCI+F+DEIDA
Sbjct: 198 TGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA 257
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQ+L EMDGFEGN G+IVIAATNR D+LD ALLRPGRFDR
Sbjct: 258 VGRQRGAGMGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLDPALLRPGRFDR 317
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVTV +PDIRGR +ILKVH DV +VIA TPGFSG R
Sbjct: 318 QVTVGLPDIRGREQILKVHMRKVPLGDDVKAEVIARGTPGFSGADLANLVNEAALCAART 377
Query: 481 GKAAISSKEIDDSIDRIVAGMEGTVMTDGKS-KSLVAYHEVGHAICGTLTPGHDPVQKVT 539
+ +S KE D + D+I+ G E M +S + + AYHE GHAI G L P HDPV KV+
Sbjct: 378 ARRVVSMKEFDAAKDKIMMGSERKSMVMSESEREMTAYHEAGHAIIGRLVPDHDPVYKVS 437
Query: 540 LVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQ 599
++PRG+A G+T ++P D SKQ L + I GGR AEEVI+G +V+TGA+ D+++
Sbjct: 438 IIPRGRALGVTMYLPEQDRFSHSKQHLESNISSLYGGRVAEEVIYGSDKVSTGASNDIER 497
Query: 600 ITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARN-SMSEKLAEDIDAAVKRLS 656
T +A++MVT +G+SE +GP ++ + G+V + R A++ MS++ A+ ID +K +
Sbjct: 498 ATNIARKMVTQWGLSEKMGP--MLFAEEEGEVFLGRTSAKSLHMSDETAKTIDEEIKSVI 555
Query: 657 DRAYEIALSQIRNNREAIDKIVEVLLEKETM 687
R Y+ A I+ N + + + + L++ ET+
Sbjct: 556 SRNYQRAEDLIKANMDVLHAMKDCLMKYETI 586
Score = 45 (20.9 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 10/56 (17%), Positives = 28/56 (50%)
Query: 92 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI 147
K L+ + + L+ ++++ +M Y+RF++ + + +++ + NG I
Sbjct: 3 KNLILWLVIAVVLMSVFQSFSPNT-TEDQQMDYTRFIQDVRQGQIRDASVDRNGVI 57
>TIGR_CMR|CBU_1352 [details] [associations]
symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
species:227377 "Coxiella burnetii RSA 493" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
Length = 647
Score = 1115 (397.6 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 232/462 (50%), Positives = 310/462 (67%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKA+ + VTFDDVAGVDEAK++ E+VEFL+ P +F +G ++P GVLLVGPPG
Sbjct: 140 RSKARLLSQDQVKVTFDDVAGVDEAKEEVKELVEFLRDPGKFQRLGGKMPCGVLLVGPPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA+AGEA VPFF+ISGS+FVEMFVGVGASRVRD+F +AK+ APCI+F+DEIDA
Sbjct: 200 TGKTLLAKAVAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGFEG GIIV+AATNR D+LD ALLRPGRFDR
Sbjct: 260 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGKEGIIVMAATNRPDVLDPALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QV V +PDI+GR ILKVH + DV VIA TPGFSG R
Sbjct: 320 QVVVPLPDIKGREYILKVHMNKLPLAKDVKASVIARGTPGFSGADLANIVNEAALFAARE 379
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K +S E + + D+I+ G E VM+D + K L AYHE GHAI G HDPV KV
Sbjct: 380 NKKDVSMSEFERAKDKIMMGAERRSMVMSDDEKK-LTAYHEAGHAIVGLHMLEHDPVYKV 438
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++PRG+A G+T F+P D ++K++L ++ G GGR AEE+IFG VTTGA+ D++
Sbjct: 439 TIIPRGRALGVTMFLPEHDRYSMTKRRLECQLAGLFGGRIAEEIIFGPDLVTTGASNDIE 498
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMA-RNSMSEKLAEDIDAAVKRL 655
+ T +A+ MVT +G+S+ +GP + + + G+V + R + R +S+ ++ID+ V+R+
Sbjct: 499 KATEIARNMVTKWGLSQKLGPLTYRE--EEGEVFLGRSVTQRKDISDATNKEIDSEVRRI 556
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
D AY A + + E + + + L++ ET+ + + IL+
Sbjct: 557 VDTAYTTAKQTLEEHIEQLHLMAKALIKYETIGEAQIKEILA 598
Score = 41 (19.5 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 123 SYSRFLEYLDKDRVKKV 139
SYS+F++ ++ D+V V
Sbjct: 36 SYSQFVQAVNNDKVSSV 52
>UNIPROTKB|Q9KU86 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
Uniprot:Q9KU86
Length = 651
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 228/462 (49%), Positives = 309/462 (66%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKA+ E TF DVAG DEAK+D E+V++L+ P RF +G +IP GVL+VGPPG
Sbjct: 140 KSKARMMSEDQIKTTFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F++AK+ +PCI+F+DEIDA
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDR
Sbjct: 260 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QV V +PD+RGR +ILKVH DV +IA TPGFSG R
Sbjct: 320 QVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALFAARG 379
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K +S E + + D+I+ G E VM++ + K AYHE GHA+ G L P HDPV KV
Sbjct: 380 NKRNVSMVEFELAKDKIMMGAERRSMVMSE-EIKESTAYHEAGHAVVGRLVPEHDPVYKV 438
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
+++PRG+A G+T ++P D +SKQ L + I GGR AEE+I+G+ +V+TGA+ D++
Sbjct: 439 SIIPRGRALGVTMYLPEQDRVSMSKQHLESMISSLYGGRLAEELIYGKEKVSTGASNDIE 498
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNS-MSEKLAEDIDAAVKRL 655
+ T +A++MVT +G SE +GP ++ G+V + R + + MS+ A+ ID V+++
Sbjct: 499 RATEIARKMVTQWGFSEKLGP--MLYAEDEGEVFLGRSVTQTKHMSDDTAKLIDDEVRQI 556
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
DR YE A I +N + + + + L++ ET+ + +++
Sbjct: 557 IDRNYERARQIIMDNMDIMHAMKDALMKYETIDAGQIDDLMA 598
>TIGR_CMR|VC_0637 [details] [associations]
symbol:VC_0637 "cell division protein FtsH" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
ProtClustDB:CLSK874054 Uniprot:Q9KU86
Length = 651
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 228/462 (49%), Positives = 309/462 (66%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKA+ E TF DVAG DEAK+D E+V++L+ P RF +G +IP GVL+VGPPG
Sbjct: 140 KSKARMMSEDQIKTTFSDVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGVLMVGPPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKAIAGEA VPFF+ISGS+FVEMFVGVGASRVRD+F++AK+ +PCI+F+DEIDA
Sbjct: 200 TGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDR
Sbjct: 260 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QV V +PD+RGR +ILKVH DV +IA TPGFSG R
Sbjct: 320 QVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALFAARG 379
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K +S E + + D+I+ G E VM++ + K AYHE GHA+ G L P HDPV KV
Sbjct: 380 NKRNVSMVEFELAKDKIMMGAERRSMVMSE-EIKESTAYHEAGHAVVGRLVPEHDPVYKV 438
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
+++PRG+A G+T ++P D +SKQ L + I GGR AEE+I+G+ +V+TGA+ D++
Sbjct: 439 SIIPRGRALGVTMYLPEQDRVSMSKQHLESMISSLYGGRLAEELIYGKEKVSTGASNDIE 498
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNS-MSEKLAEDIDAAVKRL 655
+ T +A++MVT +G SE +GP ++ G+V + R + + MS+ A+ ID V+++
Sbjct: 499 RATEIARKMVTQWGFSEKLGP--MLYAEDEGEVFLGRSVTQTKHMSDDTAKLIDDEVRQI 556
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
DR YE A I +N + + + + L++ ET+ + +++
Sbjct: 557 IDRNYERARQIIMDNMDIMHAMKDALMKYETIDAGQIDDLMA 598
>UNIPROTKB|Q5LNU8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 1071 (382.1 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 224/460 (48%), Positives = 304/460 (66%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKAK E + VTFDDVAG+DEAK++ E+VEFL+ P++F+ +G +IPKG LLVGPPG
Sbjct: 140 KSKAKMLTEKHGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEAGVPFF+ISGS+FVEMFVGVGASRVRD+F++AK+NAPCIVF+DEIDA
Sbjct: 200 TGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+I++AATNR D+LD ALLRPGRFDR
Sbjct: 260 VGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
VTV PDI+GR +IL VH DV L +IA TPGFSG R
Sbjct: 320 NVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARV 379
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQK 537
G+ ++ ++ +++ D+++ G E V+T D K K+ AYHE GHA+ G P DPV K
Sbjct: 380 GRRFVTMEDFENAKDKVMMGAERRSMVLTQDQKEKT--AYHEAGHAVVGLALPMCDPVYK 437
Query: 538 VTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDL 597
T++PRG A G+ +P D + + ++ + G+AAE + +GE V+ G AGD+
Sbjct: 438 ATIIPRGGALGMVVSLPEMDRLNWHRDECQQKLAMTMAGKAAEILKYGEDHVSNGPAGDI 497
Query: 598 QQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLS 656
QQ + LA+ MV +GMS+ +G +D +++ + A S+S E I+ VKR
Sbjct: 498 QQASQLARAMVMRWGMSDKVGN---IDYAEAHEGYSGNTAGFSVSAHTKELIEEEVKRFI 554
Query: 657 DRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+ Y+ A + + RE D++ + LLE ET++G+E + ++
Sbjct: 555 QQGYDQAHAILTERREDWDRLAQGLLEYETLTGEEIKRVM 594
Score = 43 (20.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 117 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELL 176
+ S +YS F+ +D+ V KV L +G E I + V ++ PG E+
Sbjct: 33 LQSQEKTYSEFVSAVDEGNVTKVIL--DG-----EQIRYRTSDGRDFVTIK-PG-DAEVT 83
Query: 177 QKFREKNIDFAAHNAQEDSG--SLLFNLI 203
+KNI A Q+ SG S + L+
Sbjct: 84 TLLIDKNIPVRAEK-QQQSGFQSFIITLL 111
>TIGR_CMR|SPO_3105 [details] [associations]
symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 1071 (382.1 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 224/460 (48%), Positives = 304/460 (66%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SKAK E + VTFDDVAG+DEAK++ E+VEFL+ P++F+ +G +IPKG LLVGPPG
Sbjct: 140 KSKAKMLTEKHGRVTFDDVAGIDEAKEELEEIVEFLRNPQKFSRLGGKIPKGALLVGPPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEAGVPFF+ISGS+FVEMFVGVGASRVRD+F++AK+NAPCIVF+DEIDA
Sbjct: 200 TGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+I++AATNR D+LD ALLRPGRFDR
Sbjct: 260 VGRHRGAGYGGGNDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
VTV PDI+GR +IL VH DV L +IA TPGFSG R
Sbjct: 320 NVTVGNPDIKGREKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAARV 379
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQK 537
G+ ++ ++ +++ D+++ G E V+T D K K+ AYHE GHA+ G P DPV K
Sbjct: 380 GRRFVTMEDFENAKDKVMMGAERRSMVLTQDQKEKT--AYHEAGHAVVGLALPMCDPVYK 437
Query: 538 VTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDL 597
T++PRG A G+ +P D + + ++ + G+AAE + +GE V+ G AGD+
Sbjct: 438 ATIIPRGGALGMVVSLPEMDRLNWHRDECQQKLAMTMAGKAAEILKYGEDHVSNGPAGDI 497
Query: 598 QQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLS 656
QQ + LA+ MV +GMS+ +G +D +++ + A S+S E I+ VKR
Sbjct: 498 QQASQLARAMVMRWGMSDKVGN---IDYAEAHEGYSGNTAGFSVSAHTKELIEEEVKRFI 554
Query: 657 DRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+ Y+ A + + RE D++ + LLE ET++G+E + ++
Sbjct: 555 QQGYDQAHAILTERREDWDRLAQGLLEYETLTGEEIKRVM 594
Score = 43 (20.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 117 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELL 176
+ S +YS F+ +D+ V KV L +G E I + V ++ PG E+
Sbjct: 33 LQSQEKTYSEFVSAVDEGNVTKVIL--DG-----EQIRYRTSDGRDFVTIK-PG-DAEVT 83
Query: 177 QKFREKNIDFAAHNAQEDSG--SLLFNLI 203
+KNI A Q+ SG S + L+
Sbjct: 84 TLLIDKNIPVRAEK-QQQSGFQSFIITLL 111
>TIGR_CMR|DET_0391 [details] [associations]
symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
Uniprot:Q3Z9G3
Length = 608
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 230/463 (49%), Positives = 311/463 (67%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+SKAK F M+ T +TF +VAGVDEAKQ+ EVVEFLK E+F A+GARIPKG+LL+GPP
Sbjct: 143 RSKAKLFNMDKPT-ITFANVAGVDEAKQEVGEVVEFLKSREKFQALGARIPKGILLIGPP 201
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLF +AK+NAPCI+F+DEID
Sbjct: 202 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEID 261
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
AV +DEREQTLNQ+L EMDGF+ +T +IVIAATNR DILD ALLRPGRFD
Sbjct: 262 AVGRQRGAGLGGGHDEREQTLNQILVEMDGFDTDTSVIVIAATNRPDILDPALLRPGRFD 321
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGR 479
R+V +D PDI GR ILK+H K V+L+ +A +T GFSG R
Sbjct: 322 RRVVLDKPDITGREAILKIHAKGKPLADTVNLENLAKQTVGFSGADLANLLNEAAILAAR 381
Query: 480 RGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
+ + + ++++++SIDR++AG E + + K + AYHE GH + L G DPV K+
Sbjct: 382 KNRKVVETEDLEESIDRVIAGPERKSRRISTQEKEVTAYHETGHGLVLRLVQGADPVHKI 441
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
++V RG G T +P++D L+++ Q A + G L G AEE+ F E++TGA+ DL+
Sbjct: 442 SIVARGMTLGHTRQLPNEDRYLMTRSQFKAMMAGLLAGYVAEELTF--KELSTGASDDLR 499
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSD 657
+ T +A +MVT++GMS+ +GP + + + + + + EK+A+ ID V+ L +
Sbjct: 500 RATDIAHKMVTSYGMSDKLGPRTFGNKEEMVFLGREISEQKDYGEKVADMIDEEVRGLIE 559
Query: 658 RAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI-LSEF 699
A++ A + + N+ + I E L EKET+ G E + + EF
Sbjct: 560 EAHQKAKTILTENKNRLKFIAEKLFEKETLEGAELENLFVGEF 602
>UNIPROTKB|Q2GFA1 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST
MEROPS:M41.001 ProtClustDB:CLSK749654 RefSeq:YP_507882.1
ProteinModelPortal:Q2GFA1 SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708
KEGG:ech:ECH_1098 PATRIC:20577534
BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
Identities = 222/459 (48%), Positives = 300/459 (65%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+AK E VTF+DVAG+DEAK++ +E+V+FLK +RF +G +IPKG LL+G PG
Sbjct: 140 KSRAKLMTENRNKVTFNDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K+NAPCI+F+DEIDA
Sbjct: 200 TGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+I+IAATNR D+LDSALLRPGRFDR
Sbjct: 260 VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDSALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVT+ +PDI GR +I+ VH DV++ IA TPGFSG R
Sbjct: 320 QVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIAARL 379
Query: 481 GKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVT 539
K ++ + + + D+++ G E ++M + + L AYHE GHAI T DP+ K T
Sbjct: 380 NKKIVTMSDFEYARDKVMMGAERKSLMMTEEERRLTAYHEAGHAIIAFFTEASDPIHKAT 439
Query: 540 LVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQ 599
++PRG++ GL +P D +++++ A + +GGRAAEE+IFG +VT+GA+ D++Q
Sbjct: 440 IIPRGRSLGLVMRLPESDRVSHTREKMIADLTVAMGGRAAEELIFGYHKVTSGASSDIKQ 499
Query: 600 ITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDR 658
T LAK MV +GMS+ +GP L D I S LA ID VK +
Sbjct: 500 ATDLAKAMVMKWGMSDKVGP--LYHNDDKNDTI---------SNNLANLIDEEVKLIVTS 548
Query: 659 AYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
A E A S + + E++ + + LLE ET++G++ + I++
Sbjct: 549 ALERAKSLLNEHLESLHIVAKNLLEFETLTGEDIKNIIN 587
>TIGR_CMR|ECH_1098 [details] [associations]
symbol:ECH_1098 "ATP-dependent metalloprotease FtsH"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 GO:GO:0000910
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 OMA:ENMSYST MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_507882.1 ProteinModelPortal:Q2GFA1
SMR:Q2GFA1 STRING:Q2GFA1 GeneID:3927708 KEGG:ech:ECH_1098
PATRIC:20577534 BioCyc:ECHA205920:GJNR-1101-MONOMER Uniprot:Q2GFA1
Length = 610
Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
Identities = 222/459 (48%), Positives = 300/459 (65%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+AK E VTF+DVAG+DEAK++ +E+V+FLK +RF +G +IPKG LL+G PG
Sbjct: 140 KSRAKLMTENRNKVTFNDVAGIDEAKEELIEIVDFLKHRQRFQKLGGKIPKGCLLIGSPG 199
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K+NAPCI+F+DEIDA
Sbjct: 200 TGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCIIFIDEIDA 259
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+I+IAATNR D+LDSALLRPGRFDR
Sbjct: 260 VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDSALLRPGRFDR 319
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVT+ +PDI GR +I+ VH DV++ IA TPGFSG R
Sbjct: 320 QVTISIPDINGREKIINVHIKKVPTAPDVNIRTIARGTPGFSGADLANLVNEAALIAARL 379
Query: 481 GKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVT 539
K ++ + + + D+++ G E ++M + + L AYHE GHAI T DP+ K T
Sbjct: 380 NKKIVTMSDFEYARDKVMMGAERKSLMMTEEERRLTAYHEAGHAIIAFFTEASDPIHKAT 439
Query: 540 LVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQ 599
++PRG++ GL +P D +++++ A + +GGRAAEE+IFG +VT+GA+ D++Q
Sbjct: 440 IIPRGRSLGLVMRLPESDRVSHTREKMIADLTVAMGGRAAEELIFGYHKVTSGASSDIKQ 499
Query: 600 ITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDR 658
T LAK MV +GMS+ +GP L D I S LA ID VK +
Sbjct: 500 ATDLAKAMVMKWGMSDKVGP--LYHNDDKNDTI---------SNNLANLIDEEVKLIVTS 548
Query: 659 AYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
A E A S + + E++ + + LLE ET++G++ + I++
Sbjct: 549 ALERAKSLLNEHLESLHIVAKNLLEFETLTGEDIKNIIN 587
>UNIPROTKB|P0C5C0 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
"growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
ProtClustDB:CLSK792593 Uniprot:P0C5C0
Length = 760
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 218/468 (46%), Positives = 305/468 (65%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+AK + TF DVAGVDEA ++ E+ +FL+ P R+ A+GA+IPKGVLL GPPG
Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALGAKIPKGVLLYGPPG 206
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+AGEAGVPFF+ISGS+FVEMFVGVGASRVRDLF++AK+N+PCI+FVDEIDA
Sbjct: 207 TGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 266
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V +DEREQTLNQLL EMDGF G+I+IAATNR DILD ALLRPGRFDR
Sbjct: 267 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDR 326
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
Q+ V PD+ GR +L+VH K AD LD +A RT G +G R
Sbjct: 327 QIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARE 386
Query: 481 GKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
I+ +++++DR++ G +G ++++ + K + AYHE GH + P +P+ KV
Sbjct: 387 NGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKV 445
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++ RG+ G +P +D L ++ ++ A++V +GGRAAEE++F EP TTGA D++
Sbjct: 446 TILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP--TTGAVSDIE 503
Query: 599 QITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIM-RMMARN-SMSEKLAEDIDAAVKRL 655
Q T +A+ MVT FGMS ++G ++ GS+ GD + R M S ++A +ID V++L
Sbjct: 504 QATKIARSMVTEFGMSSKLG--AVKYGSEHGDPFLGRTMGTQPDYSHEVAREIDEEVRKL 561
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 703
+ A+ A + R+ +D + LLEKET+ E +I ++ + P
Sbjct: 562 IEAAHTEAWEILTEYRDVLDTLAGELLEKETLHRPELESIFADVEKRP 609
>UNIPROTKB|Q2GIT4 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 219/460 (47%), Positives = 297/460 (64%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+A+ + VTFDDVAG++EAK++ +E+V+FLK ++FT +G +IPKG LL+G PG
Sbjct: 142 KSRARLMTDSRGKVTFDDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKIPKGCLLIGSPG 201
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K++APCI+FVDEIDA
Sbjct: 202 TGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIFVDEIDA 261
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+++IAATNR D+LD ALLRPGRFDR
Sbjct: 262 VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVVIIAATNRPDVLDPALLRPGRFDR 321
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVT+ +PDI GR +I+ VH DV L VIA TPGFSG R
Sbjct: 322 QVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPGFSGADLANLVNEAALIAARL 381
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K ++ + + + D+++ G E VM + + + L AYHE GHA+ P DP+ K
Sbjct: 382 DKKIVTMCDFEYARDKVMMGAERKSMVMRE-EERRLTAYHEAGHAVVAFHNPASDPIHKA 440
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++PRG++ GL +P D +++++ A + +GGRAAEE+IFG +VT+GA+ D++
Sbjct: 441 TIIPRGRSLGLVMRLPETDRVSHTREKMLADLTVAMGGRAAEELIFGYNKVTSGASSDIK 500
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSD 657
Q T LAK MV +GMS+ +GP L + A +S LA ID VK +
Sbjct: 501 QATDLAKSMVMKWGMSDSVGP--LYHSDE---------AHERISTNLANLIDDEVKSIVS 549
Query: 658 RAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
A A + + +A+ I LLE ET++GD+ I++
Sbjct: 550 TALAEAKDVLTKHSDALHAIAANLLEFETLTGDDIADIIA 589
>TIGR_CMR|APH_1179 [details] [associations]
symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
Uniprot:Q2GIT4
Length = 611
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 219/460 (47%), Positives = 297/460 (64%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+S+A+ + VTFDDVAG++EAK++ +E+V+FLK ++FT +G +IPKG LL+G PG
Sbjct: 142 KSRARLMTDSRGKVTFDDVAGIEEAKEELIEIVDFLKHRQKFTKLGGKIPKGCLLIGSPG 201
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+AIAGEA VPFFSISGS+FVEMFVGVGASRVRD+F++ K++APCI+FVDEIDA
Sbjct: 202 TGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIFVDEIDA 261
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDEREQTLNQLL EMDGFE N G+++IAATNR D+LD ALLRPGRFDR
Sbjct: 262 VGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVVIIAATNRPDVLDPALLRPGRFDR 321
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
QVT+ +PDI GR +I+ VH DV L VIA TPGFSG R
Sbjct: 322 QVTISIPDINGREKIIAVHAKKVPLAPDVDLRVIARGTPGFSGADLANLVNEAALIAARL 381
Query: 481 GKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKV 538
K ++ + + + D+++ G E VM + + + L AYHE GHA+ P DP+ K
Sbjct: 382 DKKIVTMCDFEYARDKVMMGAERKSMVMRE-EERRLTAYHEAGHAVVAFHNPASDPIHKA 440
Query: 539 TLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
T++PRG++ GL +P D +++++ A + +GGRAAEE+IFG +VT+GA+ D++
Sbjct: 441 TIIPRGRSLGLVMRLPETDRVSHTREKMLADLTVAMGGRAAEELIFGYNKVTSGASSDIK 500
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSD 657
Q T LAK MV +GMS+ +GP L + A +S LA ID VK +
Sbjct: 501 QATDLAKSMVMKWGMSDSVGP--LYHSDE---------AHERISTNLANLIDDEVKSIVS 549
Query: 658 RAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 697
A A + + +A+ I LLE ET++GD+ I++
Sbjct: 550 TALAEAKDVLTKHSDALHAIAANLLEFETLTGDDIADIIA 589
>TIGR_CMR|GSU_1180 [details] [associations]
symbol:GSU_1180 "cell division protein FtsH"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
Uniprot:Q74DY5
Length = 617
Score = 1003 (358.1 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 205/445 (46%), Positives = 282/445 (63%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTFDDVAG++ K + E+V++L+ P++F IG ++PKGVLLVGPPGTGKTLLA+A+AGE
Sbjct: 172 VTFDDVAGMENPKMELKEIVDYLRDPKKFQRIGGKVPKGVLLVGPPGTGKTLLARAVAGE 231
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A V F SIS S+F+EMFVGVGA RVRDLF AK++AP I+F+DE+DAV +
Sbjct: 232 ADVTFLSISASQFIEMFVGVGAGRVRDLFATAKKSAPSIIFIDELDAVGRSRGAGLGGGH 291
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
DEREQTLNQLL+EMDGF+ + +IV+AATNR D+LD ALLRPGRFDR V +D PD R R
Sbjct: 292 DEREQTLNQLLSEMDGFDSHDEVIVMAATNRPDVLDPALLRPGRFDRHVVIDRPDWRDRE 351
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL VH D DV L VIA TPG +G R A ++ + ++ +
Sbjct: 352 KILHVHTRKIPLDKDVDLAVIARGTPGMAGADLENLVNEAAILAARENAATVTMEHMERA 411
Query: 494 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFI 553
D+++ G E + + K + AYHE GH I L PG DPV KVT++PRGQA G+T +
Sbjct: 412 KDKVLMGGERKMFITEQEKRITAYHEAGHTIVAKLLPGTDPVHKVTIIPRGQALGVTQQL 471
Query: 554 PSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGM 613
P DD K L R+ LGGR AE +FG+ ++TGA DL+ + LA++MV +GM
Sbjct: 472 PEDDRYHYPKSYLMNRLSVALGGRQAERAVFGD--LSTGAQNDLKMVNDLAEKMVCQWGM 529
Query: 614 SE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
S+ IG + G + + ++ + SE++A ID + + A + A + I NNR
Sbjct: 530 SDKIGAMTFSRGEEHPFLGRKLAEEKTFSEQMAWLIDQEIAAIIKEAEQKADNVIANNRG 589
Query: 673 AIDKIVEVLLEKETMSGDEFRAILS 697
+D +V+ L+E+ET+ G +L+
Sbjct: 590 KLDALVDALMEEETLDGKRIDEVLA 614
Score = 43 (20.2 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 111 YADEQGVSSSRM-SYSRFLEYLDKDRVKKVDLFENGTIA 148
Y Q V + SYSRF L +K++ + + TIA
Sbjct: 25 YVARQSVDGGAVVSYSRFRAELAAGNIKRITI-KGTTIA 62
>TIGR_CMR|CJE_1259 [details] [associations]
symbol:CJE_1259 "cell division protein FtsH"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
Uniprot:Q5HTY8
Length = 645
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 215/450 (47%), Positives = 290/450 (64%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
V F DVAGV+EAK++ E+V+FLK PER+ +GA+IPKG+LLVGPPGTGKTLLAKA+AGE
Sbjct: 175 VKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVGPPGTGKTLLAKAVAGE 234
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX- 372
A VPFFS+SGS F+EMFVGVGASRVRDLF+ AK+ AP IVF+DEIDA+
Sbjct: 235 ADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFIDEIDAIGKSRAASGMMGG 294
Query: 373 NDEREQTLNQLLTEMDGFEGNTG-IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
NDEREQTLNQLL EMDGF + +IV+AATNR ++LD+ALLRPGRFDRQV VD PD +G
Sbjct: 295 NDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAALLRPGRFDRQVLVDKPDFKG 354
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R +ILKVH + K V ++ IA T G +G GR K + ++
Sbjct: 355 RCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANIINEAALLAGRDSKKYVEQNDLV 414
Query: 492 DSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GL 549
++++R +AG+E + + K K +V YHE GHA+ T G V KV+++PRG A G
Sbjct: 415 EAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIAETTKGAKRVSKVSVIPRGLAALGY 474
Query: 550 TWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVT 609
T P ++ L+ K +L A + LGGRAAEEV GE ++TGA+ DL++ T + K M++
Sbjct: 475 TLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVFIGE--ISTGASNDLERATDIIKAMIS 532
Query: 610 TFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRN 669
+GMSEI +++ Q + SEK+AE +D VK+ D Y+ +
Sbjct: 533 MYGMSEIAGLMVLE-KQRNTFLSGGQTIKDYSEKMAESLDDYVKKTLDERYKDVKDTLNT 591
Query: 670 NREAIDKIVEVLLEKETMSGDEFRAILSEF 699
+ AI+ +V L E+ET+ G++ R I+ EF
Sbjct: 592 YKGAIETMVAALYEEETIEGNKVREIIKEF 621
>TAIR|locus:2163736 [details] [associations]
symbol:FTSH11 "FTSH protease 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=TAS] [GO:0009408 "response to heat" evidence=IMP]
[GO:0009644 "response to high light intensity" evidence=IMP]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005743 GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0009408 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176
EMBL:AB025622 HOGENOM:HOG000217276 GO:GO:0010304 EMBL:AY091086
EMBL:AY123027 IPI:IPI00537766 RefSeq:NP_568787.1 UniGene:At.7145
ProteinModelPortal:Q9FGM0 SMR:Q9FGM0 MEROPS:M41.018 PaxDb:Q9FGM0
PRIDE:Q9FGM0 EnsemblPlants:AT5G53170.1 GeneID:835398
KEGG:ath:AT5G53170 GeneFarm:4747 TAIR:At5g53170 InParanoid:Q9FGM0
OMA:DIMPEKN PhylomeDB:Q9FGM0 ProtClustDB:CLSN2690002
Genevestigator:Q9FGM0 Uniprot:Q9FGM0
Length = 806
Score = 968 (345.8 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 213/450 (47%), Positives = 281/450 (62%)
Query: 247 QMEPNTGV-TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
++ P V TF DV G D+AKQ+ EVVE+LK P +FT +G ++PKG+LL G PGTGKTL
Sbjct: 351 EITPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTL 410
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
LAKAIAGEAGVPFF +GSEF EMFVGVGA RVR LF+ AK+ APCI+F+DEIDAV
Sbjct: 411 LAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 470
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++TL+QLL EMDGFE N GIIV+AATN DILD AL RPGRFDR + V
Sbjct: 471 KQW----EGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVP 526
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
PD+RGR EIL+++ K DV + IA TPGF+G G +
Sbjct: 527 SPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKL 586
Query: 486 SSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG 544
SS++++ + DRIV G E T+ SK L AYHE GHAI T G P+ K T++PRG
Sbjct: 587 SSEQLEFAKDRIVMGTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPRG 646
Query: 545 QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLA 604
A G+ +PS+D T +SK+QL AR+ +GGR AEE+IFG +TTGA+ DL Q T LA
Sbjct: 647 SALGMVTQLPSNDETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELA 706
Query: 605 KQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARN-SMSEKLAEDIDAAVKRLSDRAYEI 662
+ MV++ GMSE IGP + + S D+ R+ A + + E + + +KR + + +
Sbjct: 707 QYMVSSCGMSEAIGPVHIKE-RPSSDMQSRIDAEVVKLLREAYERVKSLLKRHEKQLHTL 765
Query: 663 ALSQIRNNREAIDKIVEVLLEKETMSGDEF 692
A + + + I +LL K+ G++F
Sbjct: 766 ANALLEYETLTAEDIKRILLPKQ--EGEKF 793
Score = 606 (218.4 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 141/322 (43%), Positives = 190/322 (59%)
Query: 377 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 436
++TL+QLL EMDGFE N GIIV+AATN DILD AL RPGRFDR + V PD+RGR EIL
Sbjct: 478 KKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEIL 537
Query: 437 KVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDR 496
+++ K DV + IA TPGF+G G +SS++++ + DR
Sbjct: 538 ELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSEQLEFAKDR 597
Query: 497 IVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPS 555
IV G E T+ SK L AYHE GHAI T G P+ K T++PRG A G+ +PS
Sbjct: 598 IVMGTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPRGSALGMVTQLPS 657
Query: 556 DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE 615
+D T +SK+QL AR+ +GGR AEE+IFG +TTGA+ DL Q T LA+ MV++ GMSE
Sbjct: 658 NDETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSE 717
Query: 616 -IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAI 674
IGP + + S D M +R IDA V +L AYE S ++ + + +
Sbjct: 718 AIGPVHIKE-RPSSD----MQSR----------IDAEVVKLLREAYERVKSLLKRHEKQL 762
Query: 675 DKIVEVLLEKETMSGDEFRAIL 696
+ LLE ET++ ++ + IL
Sbjct: 763 HTLANALLEYETLTAEDIKRIL 784
Score = 50 (22.7 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 91 LKKLVGNVG-VGTALLGSGKAYADEQ 115
L+K +G++G +GT+ +GS +Y+ ++
Sbjct: 322 LQKYIGSLGGIGTSGVGSSSSYSPKE 347
>DICTYBASE|DDB_G0272120 [details] [associations]
symbol:rcaA "peptidase M41, FtsH domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0272120 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GenomeReviews:CM000151_GR GO:GO:0004222
EMBL:AAFI02000008 GO:GO:0030163 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 ProtClustDB:CLSZ2846729 RefSeq:XP_645267.1
ProteinModelPortal:Q75JS8 SMR:Q75JS8 STRING:Q75JS8
EnsemblProtists:DDB0185211 GeneID:8618433 KEGG:ddi:DDB_G0272120
InParanoid:Q75JS8 OMA:ERTIVAH Uniprot:Q75JS8
Length = 844
Score = 974 (347.9 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 212/462 (45%), Positives = 286/462 (61%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
+SK+K +T TF DVAG+DEAK++ ME V FLK P R+ +GARIPKG +L GPPG
Sbjct: 339 KSKSKAVKATST-TTFKDVAGMDEAKEEIMEFVSFLKDPSRYKKLGARIPKGAILSGPPG 397
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEAGV F++ISGS+F+EMFVGVG SRVRDLFK+A+ N PCIVF+DEIDA
Sbjct: 398 TGKTLLAKATAGEAGVNFYTISGSDFIEMFVGVGPSRVRDLFKEARANTPCIVFIDEIDA 457
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V NDERE TLNQLL EMDGF +G++V A TNR+D+LD ALLRPGRFDR
Sbjct: 458 VGRARSRGGFH-NDERENTLNQLLVEMDGFSSTSGVVVFAGTNRSDVLDPALLRPGRFDR 516
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVS--LDVIAMRTPGFSGXXXXXXXXXXXXXXG 478
Q+ V PDI+GR +I VH N K D ++ +A TPGFSG
Sbjct: 517 QIYVGKPDIKGRKDIFMVHLKNIKLDGEMEEIAKKLATLTPGFSGADIANVCNEGALVAA 576
Query: 479 RRGKAAISSKEIDDSIDRIVAGM--EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQ 536
R+ + + +++I+R++ G+ E V++ + +++VA+HE GHA+ G DP+
Sbjct: 577 RKDATSANFDHFEEAIERVLVGLKRENRVLSP-EERTIVAHHEAGHAVVGWFLEHTDPLL 635
Query: 537 KVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV++VPRG G + P D L +++QLF RI LGGR AE +IF ++TGA
Sbjct: 636 KVSIVPRGSGTLGFAQYQPKDQ-YLYTREQLFDRICVSLGGRIAESIIFDR--ISTGAMD 692
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL ++T +A V +GMSE +G S + GD I + S+ A ID ++R
Sbjct: 693 DLDKVTKMASASVVNYGMSEKVGVASFR---KEGDDITVV---KPYSQATARMIDEEIRR 746
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+ + AY + +E + K+ +LLEKE + D+ R IL
Sbjct: 747 MVNDAYSKTTQLLHEKKELLIKLATILLEKEVIQRDDLRTIL 788
Score = 43 (20.2 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 141 LFENGTIAIVEAISPELG 158
L N T +VE + PE+G
Sbjct: 236 LLTNTTAEVVEKVQPEVG 253
>FB|FBgn0036702 [details] [associations]
symbol:CG6512 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046331
"lateral inhibition" evidence=IMP] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AE014296
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0030163 GO:GO:0046331
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OMA:YSEDTAM HSSP:Q9LCZ4 UniGene:Dm.986 GeneID:39922
KEGG:dme:Dmel_CG6512 FlyBase:FBgn0036702 GenomeRNAi:39922
NextBio:816090 EMBL:AY084199 RefSeq:NP_730248.2 SMR:Q8T4G5
IntAct:Q8T4G5 MINT:MINT-1004758 STRING:Q8T4G5
EnsemblMetazoa:FBtr0075251 UCSC:CG6512-RA InParanoid:Q8T4G5
Uniprot:Q8T4G5
Length = 826
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 215/461 (46%), Positives = 286/461 (62%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
QS AK GV F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 312 QSTAKLTNPNEIGVGFKDVAGCEEAKIEIMEFVNFLKNPQQYIDLGAKIPKGAMLTGPPG 371
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG SRVRD+F A+++APCI+F+DEIDA
Sbjct: 372 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPSRVRDMFAMARKHAPCILFIDEIDA 431
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V + E+E TLNQLL EMDGF T ++V+AATNR DILD AL+RPGRFDR
Sbjct: 432 VGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDR 491
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDAD---VSLDVIAMRTPGFSGXXXXXXXXXXXXXX 477
Q+ V PDI+GR I KVH N K D +S + A+ TPGF+G
Sbjct: 492 QIYVPAPDIKGRASIFKVHLGNLKTSLDKNELSRKMAAL-TPGFTGADIANVCNEAALIA 550
Query: 478 GRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQ 536
R K +I K + +I+R++AGME T + + K VA+HE GHA+ G DP+
Sbjct: 551 ARDSKDSIVLKHFEQAIERVIAGMEKKTNVLAPEEKRTVAHHEAGHAVAGWFLEHADPLL 610
Query: 537 KVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 596
KV+++PRG+ G ++P D L+SK+QLF R+ LGGR AEE+ F +TTGA D
Sbjct: 611 KVSIIPRGKGLGYAQYLPKDH-YLLSKEQLFDRMCMTLGGRVAEELFFNR--ITTGAQDD 667
Query: 597 LQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRL 655
L++IT +A V FGM+E +G S D Q+GD + SE A+ ID V+ +
Sbjct: 668 LKKITDIAYSQVVRFGMNEKVGQVSF-DVGQAGDPVFS----KPYSEDTAQLIDNEVRSI 722
Query: 656 SDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
A+E S + ++E + K+ E LL+ E +S D+ +L
Sbjct: 723 IKCAHEATTSLLTKHKENVQKVAERLLQNEVLSRDDMIELL 763
>CGD|CAL0000075 [details] [associations]
symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 664 (238.8 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 129/213 (60%), Positives = 158/213 (74%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+SKAK F E + F DVAG DE+K++ ME V+FL+ P ++ +GA+IP+G +L GPP
Sbjct: 270 KSKAKLFNQENEVKIKFKDVAGCDESKEEIMEFVKFLQDPHKYEKLGAKIPRGAILSGPP 329
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGEAGVPF S+SGSEFVEMFVGVGASRVRDLFK A+E AP I+FVDEID
Sbjct: 330 GTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAIIFVDEID 389
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
A+ NDERE TLNQLL EMDGF+ ++V+A TNR DILD ALLRPGRFD
Sbjct: 390 AIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPGRFD 449
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLD 452
R +++DVPD+ GR +I KVH + K + +D
Sbjct: 450 RHISIDVPDVEGRKQIFKVHLNKLKLKSVQDID 482
Score = 344 (126.2 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 82/241 (34%), Positives = 130/241 (53%)
Query: 454 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSK 512
+A TPGF+G R A+ + + +I+R++AG+E + + + K
Sbjct: 508 LAALTPGFAGADIANCCNEGALIAAREDAPAVDTYHFEQAIERVIAGLEKKSRILSPEEK 567
Query: 513 SLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIV 571
VAYHE GHAICG DP+ KV+++PRGQ A G ++P D L S++Q R++
Sbjct: 568 KTVAYHEAGHAICGWFLQYADPLVKVSIIPRGQGALGYAQYLPKDQ-YLTSQEQFKHRMI 626
Query: 572 GGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDV 630
LGGR +EE+ F VT+GA+ D ++IT +A+QM+ GMS+ +G S +G+
Sbjct: 627 MTLGGRVSEELHFDT--VTSGASDDFKKITQMAQQMILKLGMSDKLGQICYDTSSDNGN- 683
Query: 631 IMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGD 690
++ SE A ID VKRL D +YE + + +DK+ E L +KE ++ +
Sbjct: 684 --GFKVHHNYSETTARIIDEEVKRLIDESYEACHKLLTEKLDLVDKVAEELFKKEVLTRE 741
Query: 691 E 691
+
Sbjct: 742 D 742
Score = 53 (23.7 bits), Expect = 6.9e-29, Sum P(2) = 6.9e-29
Identities = 27/75 (36%), Positives = 33/75 (44%)
Query: 94 LVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKV-DLFENG---TIAI 149
L G G G LL KA A E GV +S S F+E +V DLF+ AI
Sbjct: 325 LSGPPGTGKTLLA--KATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAI 382
Query: 150 V-----EAISPELGN 159
+ +AI E GN
Sbjct: 383 IFVDEIDAIGKERGN 397
Score = 41 (19.5 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 638 NSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKI 677
N + K +DIDA K + Y+ Q++N E I+K+
Sbjct: 471 NKLKLKSVQDIDAKQKDVDFSKYQ----QLKN--EEIEKL 504
>UNIPROTKB|Q5AJC2 [details] [associations]
symbol:AFG3 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
Uniprot:Q5AJC2
Length = 795
Score = 664 (238.8 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 129/213 (60%), Positives = 158/213 (74%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+SKAK F E + F DVAG DE+K++ ME V+FL+ P ++ +GA+IP+G +L GPP
Sbjct: 270 KSKAKLFNQENEVKIKFKDVAGCDESKEEIMEFVKFLQDPHKYEKLGAKIPRGAILSGPP 329
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGEAGVPF S+SGSEFVEMFVGVGASRVRDLFK A+E AP I+FVDEID
Sbjct: 330 GTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAIIFVDEID 389
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
A+ NDERE TLNQLL EMDGF+ ++V+A TNR DILD ALLRPGRFD
Sbjct: 390 AIGKERGNGRMGGNDERENTLNQLLVEMDGFDTTDHVVVLAGTNRPDILDKALLRPGRFD 449
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLD 452
R +++DVPD+ GR +I KVH + K + +D
Sbjct: 450 RHISIDVPDVEGRKQIFKVHLNKLKLKSVQDID 482
Score = 344 (126.2 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 82/241 (34%), Positives = 130/241 (53%)
Query: 454 IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSK 512
+A TPGF+G R A+ + + +I+R++AG+E + + + K
Sbjct: 508 LAALTPGFAGADIANCCNEGALIAAREDAPAVDTYHFEQAIERVIAGLEKKSRILSPEEK 567
Query: 513 SLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIV 571
VAYHE GHAICG DP+ KV+++PRGQ A G ++P D L S++Q R++
Sbjct: 568 KTVAYHEAGHAICGWFLQYADPLVKVSIIPRGQGALGYAQYLPKDQ-YLTSQEQFKHRMI 626
Query: 572 GGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDV 630
LGGR +EE+ F VT+GA+ D ++IT +A+QM+ GMS+ +G S +G+
Sbjct: 627 MTLGGRVSEELHFDT--VTSGASDDFKKITQMAQQMILKLGMSDKLGQICYDTSSDNGN- 683
Query: 631 IMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGD 690
++ SE A ID VKRL D +YE + + +DK+ E L +KE ++ +
Sbjct: 684 --GFKVHHNYSETTARIIDEEVKRLIDESYEACHKLLTEKLDLVDKVAEELFKKEVLTRE 741
Query: 691 E 691
+
Sbjct: 742 D 742
Score = 53 (23.7 bits), Expect = 6.9e-29, Sum P(2) = 6.9e-29
Identities = 27/75 (36%), Positives = 33/75 (44%)
Query: 94 LVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKV-DLFENG---TIAI 149
L G G G LL KA A E GV +S S F+E +V DLF+ AI
Sbjct: 325 LSGPPGTGKTLLA--KATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFKTAREMAPAI 382
Query: 150 V-----EAISPELGN 159
+ +AI E GN
Sbjct: 383 IFVDEIDAIGKERGN 397
Score = 41 (19.5 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 638 NSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKI 677
N + K +DIDA K + Y+ Q++N E I+K+
Sbjct: 471 NKLKLKSVQDIDAKQKDVDFSKYQ----QLKN--EEIEKL 504
>CGD|CAL0004443 [details] [associations]
symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
"m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
Length = 846
Score = 945 (337.7 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
Identities = 203/461 (44%), Positives = 291/461 (63%)
Query: 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKT 304
KF E + + F DVAG+ EAKQ+ ME V+FL+ PE++ +GA+IP+G +L GPPGTGKT
Sbjct: 361 KFNQETDVKIKFKDVAGMAEAKQEVMEFVKFLQNPEKYEKLGAKIPRGAILSGPPGTGKT 420
Query: 305 LLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXX 364
LLAKA AGEAGVPF+S+SGSEFVEMFVGVGASRVRDLFK A+ENAP IVFVDEIDA+
Sbjct: 421 LLAKATAGEAGVPFYSVSGSEFVEMFVGVGASRVRDLFKTARENAPSIVFVDEIDAIGKQ 480
Query: 365 XXXXXXX-XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 423
NDERE TLNQLL EMDGF+ + ++V+A TNR DILD AL+RPGRFDR V
Sbjct: 481 RSKGNATGANDERETTLNQLLVEMDGFDTSDHVVVLAGTNRPDILDRALMRPGRFDRHVH 540
Query: 424 VDVPDIRGRTEILKVHGSNKKFDADVSLDV---IAMRTPGFSGXXXXXXXXXXXXXXGRR 480
+D P++ GR EI VH D+ D+ +A TPGFSG R
Sbjct: 541 IDNPELLGRKEIFDVHLQKITLQKDIDPDLSGRLAALTPGFSGADIANVCNEAALIAARY 600
Query: 481 GKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVT 539
++ + + +I+R++ G+E + + + + + +VAYHE GHAICG P+ KV+
Sbjct: 601 NAEFVTLRHFELAIERVIGGVEKKSKLLNPEEQKIVAYHEAGHAICGWYLKYAHPLLKVS 660
Query: 540 LVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQ 598
++PRGQ A G ++P D L+S QL+ R++ LGGR +EE+ F VT+GA D +
Sbjct: 661 IIPRGQGALGYAQYLPPDQ-YLMSTLQLYDRMIMTLGGRVSEELHFAS--VTSGAHDDFK 717
Query: 599 QITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSD 657
++TG+A+ MV FGMS+ +G + D ++S D + + S++ + ID+ V+R+
Sbjct: 718 KVTGIAQSMVLRFGMSKTVGMVNYYD-TRSQDDLTK-----PFSDETSRIIDSEVQRIVS 771
Query: 658 RAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
Y+ + + ++ + + LL+KE ++ ++ +L +
Sbjct: 772 DCYQKCKQLLTEKSKEVELVAQELLKKEFITREDMIRLLGK 812
Score = 58 (25.5 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
Identities = 22/91 (24%), Positives = 42/91 (46%)
Query: 60 NSSFRSLEKKPKVAVVKASLSQKQHEGRRGFLKKLVGNVGVGTALLGSGKAYADEQGVSS 119
N S + K K+ + L+ K F+ LV ++ + +LG G + D +
Sbjct: 185 NKSNEDTKDKKKIVDISIELTPKNI-----FIYTLVFSLAT-SLILGMGSSNDDTE---- 234
Query: 120 SRMSYSRFL-EYLDKDRVKKVDLFENGTIAI 149
+++ F+ +YL K+ VKKV + N + +
Sbjct: 235 --INFQSFVTDYLTKNLVKKVTVINNSVVEV 263
>ASPGD|ASPL0000072959 [details] [associations]
symbol:AN4557 species:162425 "Emericella nidulans"
[GO:0097002 "mitochondrial inner boundary membrane" evidence=IEA]
[GO:0005745 "m-AAA complex" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0006461 "protein
complex assembly" evidence=IEA] [GO:0006465 "signal peptide
processing" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:LYRFVTT MEROPS:M41.002 OrthoDB:EOG4J14HG
EMBL:BN001303 EMBL:AACD01000078 RefSeq:XP_662161.1
ProteinModelPortal:Q5B4H3 SMR:Q5B4H3 STRING:Q5B4H3
EnsemblFungi:CADANIAT00005881 GeneID:2872358 KEGG:ani:AN4557.2
Uniprot:Q5B4H3
Length = 883
Score = 964 (344.4 bits), Expect = 6.0e-99, Sum P(2) = 6.0e-99
Identities = 205/463 (44%), Positives = 286/463 (61%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+S+A+ F E + + F DVAG+DEAK + ME V FLK PERF +GA+IP+G +L GPP
Sbjct: 385 KSRARRFNHETDVKIKFSDVAGMDEAKVEIMEFVSFLKSPERFQKLGAKIPRGAILSGPP 444
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGE+GVPFFS+SGSEFVEMFVGVG SRVRDLF A++N PCI+F+DEID
Sbjct: 445 GTGKTLLAKATAGESGVPFFSVSGSEFVEMFVGVGPSRVRDLFANARKNTPCIIFIDEID 504
Query: 360 AVXXXXXXXXXXX-NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418
A+ NDERE TLNQ+LTEMDGF + ++V+A TNR D+LD AL+RPGRF
Sbjct: 505 AIGKSRSAKNFSGGNDERESTLNQILTEMDGFNTSDQVVVLAGTNRPDVLDKALMRPGRF 564
Query: 419 DRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXX 476
DR +++D P + GR +I +VH K D D ++ TPGF+G
Sbjct: 565 DRHISIDRPTMDGRKQIFRVHLKKIVTKEDMDYLTGRLSALTPGFAGADIANCVNEAALV 624
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R +++ K + +I+R+V G+E +++ + K VAYHE GHAICG DP+
Sbjct: 625 AARENAESVTMKHFERAIERVVGGLEKKSLVLSPEEKRTVAYHEAGHAICGWYFRWADPL 684
Query: 536 QKVTLVPRGQ-ARGLTWFIPSDDPT-LISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGA 593
KV+++PRGQ A G ++P++ T L++ Q+ R+ LGGR +EE+ F VT+GA
Sbjct: 685 LKVSIIPRGQGALGYAQYLPANGDTYLMTANQMMDRMAMTLGGRVSEELHFDT--VTSGA 742
Query: 594 AGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVK 653
+ D ++T LA MVT FGMS + + S + SE+ A+DID V+
Sbjct: 743 SDDFNKVTRLATAMVTKFGMSPKLKYIYYEEDPSSQL------HKPFSEETAKDIDIEVR 796
Query: 654 RLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
R+ + AY+ + ++ + + E LL KE +S D+ +L
Sbjct: 797 RIVNEAYKQCRDLLTAKKKEVGLVAEELLAKEVLSRDDMVRLL 839
Score = 38 (18.4 bits), Expect = 6.0e-99, Sum P(2) = 6.0e-99
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 39 LTTHKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLSQKQHEG 86
L T +++ LS + + +S R ++ KP+ V KQ +G
Sbjct: 28 LQTRISQSRLSSLYTAHRVRTFTSQRDVDPKPERRVPPTENDGKQDDG 75
>TAIR|locus:2075581 [details] [associations]
symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
Uniprot:Q9SD67
Length = 802
Score = 950 (339.5 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
Identities = 216/465 (46%), Positives = 293/465 (63%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+TF DVAGVDEAK++ E+VEFL+ PE++ +GAR P+GVLLVG PGTGKTLLAKA+AGE
Sbjct: 322 ITFADVAGVDEAKEELEEIVEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX-X 372
A VPF S S SEFVE++VG+GASRVRDLF +AK+ AP I+F+DEIDAV
Sbjct: 382 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGS 441
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
NDEREQTLNQLLTEMDGF+ N+ +IV+ ATNRAD+LD AL RPGRFDR VTV+ PD GR
Sbjct: 442 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGR 501
Query: 433 TEILKVHGSNKKFDA--DVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
IL+VH S K+ DV+L IA T GF+G GR+ K + +
Sbjct: 502 ESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDF 561
Query: 491 DDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-G 544
+++R +AG+E + G K++VA HE GHA+ GT L G V+K++++PR G
Sbjct: 562 IQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTG 621
Query: 545 QARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGL 603
A G T+ P S+D L+ +L R+V LGGRAAEEV++ ++TGA D+++ T +
Sbjct: 622 GALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSG-RISTGAFDDIRRATDM 680
Query: 604 AKQMVTTFGMSE-IGPWSL--MDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 660
A + V +G+++ IGP S+ + G D R+ KL + + V L A
Sbjct: 681 AYKAVAEYGLNQKIGPVSVATLSGGGIDDSGGSPWGRDQ--GKLVDLVQKEVTILLQSAL 738
Query: 661 EIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 705
++ALS +R N + ++ + L EKE + G+E + LS V P E
Sbjct: 739 DVALSVVRANPDVLEGLGAQLEEKEKVEGEELQKWLS-MVVAPEE 782
Score = 40 (19.1 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 124 YSRFLEYLDKDRVKKVDL 141
YS FL ++ ++V+KV++
Sbjct: 179 YSEFLSKVNSNQVQKVEV 196
Score = 37 (18.1 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 101 GTALLGSGKA--YADEQGVSSSRMSYSRFLEYL 131
G + G G+ +AD GV ++ +E+L
Sbjct: 312 GGKVSGGGETITFADVAGVDEAKEELEEIVEFL 344
>WB|WBGene00004978 [details] [associations]
symbol:spg-7 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
Length = 782
Score = 949 (339.1 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 217/469 (46%), Positives = 284/469 (60%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
QS A+ + V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 277 QSTARVINREDIKVKFADVAGCEEAKIEIMEFVNFLKNPQQYKDLGAKIPKGAILTGPPG 336
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRD+F A++N+PCI+F+DEIDA
Sbjct: 337 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDMFSMARKNSPCILFIDEIDA 396
Query: 361 VXXXXXXXXXXX-NDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRF 418
V + E+E TLNQLL EMDGF + + +IVIAATNR DILDSALLRPGRF
Sbjct: 397 VGRKRGGKGGMGGHSEQENTLNQLLVEMDGFTTDESSVIVIAATNRVDILDSALLRPGRF 456
Query: 419 DRQVTVDVPDIRGRTEILKVH-GSNK-KFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXX 476
DRQ+ V VPDI+GR I +VH G + D V +A TPGFSG
Sbjct: 457 DRQIYVPVPDIKGRASIFRVHLGPLRTSLDKTVLSRKLAAHTPGFSGADISNVCNEAALI 516
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R IS+K + +I+R+VAGME T + + K VAYHE GHAI G DP+
Sbjct: 517 AARDANHEISNKHFEQAIERVVAGMEKKTQVLQKEEKKTVAYHEAGHAIAGWFLQHADPL 576
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L SK QL R+ LGGR AEE+ FG +TTGA
Sbjct: 577 LKVSIIPRGKGLGYAQYLPKEQ-YLYSKDQLLDRMCMTLGGRVAEEIFFGR--ITTGAQD 633
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DLQ++T +A V FGMSE +GP S + G+ M SE A+ ID V+
Sbjct: 634 DLQKVTQMAYSQVVKFGMSEKVGPLSF-ETPAPGE----MAFDKPYSEATAQLIDQEVRD 688
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE--FVE 701
L A + R I+++ LLEKE ++ ++ ++ + FVE
Sbjct: 689 LVMNALRRTRDLLLEKRSDIERVALRLLEKEILNREDMIELVGKRPFVE 737
Score = 38 (18.4 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 255 TFDDVAGVDEAKQDFMEVVEFLKKPERF 282
+F VA D++ EV+ L K +RF
Sbjct: 32 SFSAVAKDDKSVLKQQEVLHLLAKDQRF 59
>DICTYBASE|DDB_G0284249 [details] [associations]
symbol:DDB_G0284249 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
Length = 764
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 209/457 (45%), Positives = 285/457 (62%)
Query: 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKT 304
KF+ +T V F DVAG+ EAK + E V FLK P++F IGA+IP+G +LVGPPGTGKT
Sbjct: 291 KFEKSTST-VKFSDVAGLGEAKVEIEEFVNFLKNPKKFHDIGAKIPRGAILVGPPGTGKT 349
Query: 305 LLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXX 364
L+AKA AGEA VPF+S SGS+FVEMFVGVG SRVRDLF++A++NAPCIVF+DEIDAV
Sbjct: 350 LIAKATAGEANVPFYSTSGSDFVEMFVGVGPSRVRDLFEQARKNAPCIVFIDEIDAVGRA 409
Query: 365 XXXXXXX-XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 423
NDERE TLNQLL EMDGF+ ++V+AATNR DILD ALLRPGRFDRQ+T
Sbjct: 410 RGKGGFSGSNDERENTLNQLLVEMDGFKPLKNVVVLAATNRPDILDKALLRPGRFDRQIT 469
Query: 424 VDVPDIRGRTEILKVHGSNKKFDADVSL-DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGK 482
+D PD++ R EI +VH + D ++ + ++ TPGFSG RR
Sbjct: 470 IDNPDLKSREEIFRVHLAALLLDKSINYAERLSKLTPGFSGADIANVCNEAALIAARRHA 529
Query: 483 AAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLV 541
I+ + D ++DR++ G+E + K VAYHE GHA+ P+ KV++V
Sbjct: 530 EIITLEHFDAAVDRVIGGLEKKNKVLSPTEKRTVAYHEAGHAVVSWFLKHCHPLLKVSIV 589
Query: 542 PRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQI 600
PRG A G ++P + L +++Q+F + LGGR AE++ FG +TTGA DL++I
Sbjct: 590 PRGVAALGYAQYLPKEQ-FLQNQEQIFDMMCMALGGRVAEQLTFGT--ITTGAQDDLEKI 646
Query: 601 TGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRA 659
T +A V+ +GM+E IGP S G D+ SE+ AE +D V++L A
Sbjct: 647 TKMAYSQVSIYGMNEKIGPLSYQKGQDGSDLT------KPYSEETAEVMDEEVRKLLKSA 700
Query: 660 YEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
Y+ ++ +RE + + +LLEKE + +E A+L
Sbjct: 701 YDRTTQVLQEHREGLISVANLLLEKEVIHFEEVEAVL 737
>SGD|S000004695 [details] [associations]
symbol:YTA12 "Component of the mitochondrial inner membrane
m-AAA protease" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS;IDA;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA;IMP]
[GO:0016020 "membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;IDA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=IEA;IMP] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006461 "protein complex assembly" evidence=IMP]
[GO:0006465 "signal peptide processing" evidence=IMP] [GO:0005745
"m-AAA complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0031966 "mitochondrial membrane" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 SGD:S000004695 EMBL:U09358 GO:GO:0005524
GO:GO:0006461 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0008237 GO:GO:0004222 GO:GO:0016887 EMBL:BK006946
GO:GO:0030163 EMBL:Z49259 eggNOG:COG0465
GeneTree:ENSGT00530000063070 KO:K08956 TIGRFAMs:TIGR01241
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0097002 GO:GO:0045041
GO:GO:0006465 EMBL:X81068 EMBL:AY693099 PIR:S54465
RefSeq:NP_013807.1 ProteinModelPortal:P40341 SMR:P40341
DIP:DIP-889N IntAct:P40341 MINT:MINT-596896 STRING:P40341
MEROPS:M41.003 PaxDb:P40341 PeptideAtlas:P40341
EnsemblFungi:YMR089C GeneID:855114 KEGG:sce:YMR089C CYGD:YMR089c
OMA:NFSGAND NextBio:978455 Genevestigator:P40341 GermOnline:YMR089C
Uniprot:P40341
Length = 825
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 207/466 (44%), Positives = 289/466 (62%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+SKAK F E + + F DVAG DEAK++ ME V FLK+P R+ +GA+IP+G +L GPP
Sbjct: 331 RSKAKKFNTETDVKIKFKDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKIPRGAILSGPP 390
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGEAGVPF+ +SGSEFVEMFVGVGA+RVRDLFK A+ENAP IVF+DEID
Sbjct: 391 GTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEID 450
Query: 360 AVXXXXXXXXXX-XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418
A+ NDERE TLNQ+L EMDGF ++V+A TNR DILD ALLRPGRF
Sbjct: 451 AIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRF 510
Query: 419 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDV---IAMRTPGFSGXXXXXXXXXXXX 475
DR + +D P++ GR I VH + K ++ D+ +A TPGFSG
Sbjct: 511 DRHINIDKPELEGRKAIFAVHLHHLKLAGEI-FDLKNRLAALTPGFSGADIANVCNEAAL 569
Query: 476 XXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 534
R + A+ + +I+R++ G+E + + + K +VAYHE GHA+CG DP
Sbjct: 570 IAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADP 629
Query: 535 VQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGA 593
+ KV+++PRGQ A G ++P D L+++QQL R+ LGGR +EE+ F P VT+GA
Sbjct: 630 LLKVSIIPRGQGALGYAQYLPGDI-FLLTEQQLKDRMTMSLGGRVSEELHF--PSVTSGA 686
Query: 594 AGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAV 652
+ D +++T +A MVT GMS+ IG W D+ S++ + ID+ V
Sbjct: 687 SDDFKKVTSMATAMVTELGMSDKIG-WVNYQKRDDSDLT------KPFSDETGDIIDSEV 739
Query: 653 KRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
R+ ++ ++ E ++KI +VLL+KE ++ ++ +L +
Sbjct: 740 YRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGK 785
>UNIPROTKB|F1RVK1 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008283 "cell proliferation" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 GeneTree:ENSGT00550000074836
OMA:HTSHVSA EMBL:FP016148 Ensembl:ENSSSCT00000012110 Uniprot:F1RVK1
Length = 768
Score = 945 (337.7 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 202/444 (45%), Positives = 278/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 331 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 390
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 391 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 448
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 449 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 508
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 509 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 568
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 569 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 628
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 629 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 688
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M S +G +S + I+ ++ L +YE A ++ + +
Sbjct: 689 MSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAK 736
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL ET+ E + +L
Sbjct: 737 EHKNLAEALLTYETLDAKEIQIVL 760
Score = 38 (18.4 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 56 HLLFNSSFRSLEKKPKVAVVKASLSQKQH 84
HL+ ++F S K ++V AS SQ QH
Sbjct: 18 HLI--NAFHS-PKNTSISV-SASFSQNQH 42
>UNIPROTKB|Q96TA2 [details] [associations]
symbol:YME1L1 "ATP-dependent zinc metalloprotease YME1L1"
species:9606 "Homo sapiens" [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0006515 "misfolded or incompletely synthesized
protein catabolic process" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0005524 GO:GO:0016020 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0006508 GO:GO:0004222
EMBL:CH471072 EMBL:AL160291 GO:GO:0030163 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
EMBL:AL162272 HOGENOM:HOG000217276 UniGene:Hs.74647 KO:K08955
EMBL:AF151782 EMBL:AJ132637 EMBL:AY358484 EMBL:AK297973
EMBL:BC023507 EMBL:BC024032 IPI:IPI00045946 IPI:IPI00099529
RefSeq:NP_001240795.1 RefSeq:NP_055078.1 RefSeq:NP_647473.1
UniGene:Hs.499145 ProteinModelPortal:Q96TA2 SMR:Q96TA2
IntAct:Q96TA2 STRING:Q96TA2 MEROPS:M41.A20 PhosphoSite:Q96TA2
DMDM:46397258 PaxDb:Q96TA2 PRIDE:Q96TA2 Ensembl:ENST00000326799
Ensembl:ENST00000375972 Ensembl:ENST00000376016 GeneID:10730
KEGG:hsa:10730 UCSC:uc001iti.3 UCSC:uc001itj.3 CTD:10730
GeneCards:GC10M027439 H-InvDB:HIX0127242 HGNC:HGNC:12843 MIM:607472
neXtProt:NX_Q96TA2 PharmGKB:PA37434 HOVERGEN:HBG057127
InParanoid:Q96TA2 OMA:HTSHVSA PhylomeDB:Q96TA2 ChiTaRS:YME1L1
GenomeRNAi:10730 NextBio:40734 ArrayExpress:Q96TA2 Bgee:Q96TA2
CleanEx:HS_YME1L1 Genevestigator:Q96TA2 GermOnline:ENSG00000136758
Uniprot:Q96TA2
Length = 773
Score = 944 (337.4 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 202/444 (45%), Positives = 278/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 336 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGE 395
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 396 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 453
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 454 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 513
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 514 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 573
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 574 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 633
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 634 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 693
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M S +G +S + I+ ++ L +YE A ++ + +
Sbjct: 694 MSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAK 741
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL ET+ E + +L
Sbjct: 742 EHKNLAEALLTYETLDAKEIQIVL 765
Score = 38 (18.4 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 34 LVGNILTTHKTKTNLSKDFHGRHLLFNSSFRS 65
LV N+L N+S +H H+ S F +
Sbjct: 134 LVENLLPGFCKGKNISSHWHTSHVSAQSFFEN 165
>TAIR|locus:2154568 [details] [associations]
symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
Length = 806
Score = 937 (334.9 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 213/465 (45%), Positives = 293/465 (63%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+TF DVAGVDEAK++ E+VEFLK P+R+ +GAR P+GVLLVG PGTGKTLLAKA+AGE
Sbjct: 326 ITFADVAGVDEAKEELEEIVEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 385
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX-X 372
+ VPF S S SEFVE++VG+GASRVRDLF +AK+ AP I+F+DEIDAV
Sbjct: 386 SDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVS 445
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
NDEREQTLNQLLTEMDGF+ ++ +IV+ ATNRAD+LD AL RPGRFDR VTV+ PD GR
Sbjct: 446 NDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGR 505
Query: 433 TEILKVHGSNKKFDA--DVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
ILKVH S K+ DV+L IA T GF+G GR+ K + +
Sbjct: 506 ESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDF 565
Query: 491 DDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-G 544
+++R +AG+E T G K++VA HE GHA+ GT L G V+K++++PR G
Sbjct: 566 IHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSG 625
Query: 545 QARGLTWFIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGL 603
A G T+ P+ +D L+ +L R+V LGGRAAEEV++ ++TGA D+++ T +
Sbjct: 626 GALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSG-RISTGALDDIRRATDM 684
Query: 604 AKQMVTTFGMSE-IGPWSLMDGSQSG--DVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 660
A + V +G++E IGP S+ S G D R+ L + + V L A
Sbjct: 685 AYKAVAEYGLNEKIGPVSVATLSAGGIDDSGGSPWGRDQ--GHLVDLVQREVTNLLQSAL 742
Query: 661 EIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE 705
++AL+ +R N + ++ + L ++E + G+E + L+ V P+E
Sbjct: 743 DVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVV--PSE 785
Score = 43 (20.2 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 45 KTNLSKDF-HGRHLLFNSSFRSLEKKPKVAVVKASLSQKQHEGRRGFLKKLVGNVGVGTA 103
KTN K G++ L+ S + + KP + + + Q G + +V + G
Sbjct: 106 KTNKDKGRKQGKNELWWSKGKKWQWKPIIQAQEIGVMLLQ----LGIVMFVVRLLRPGIP 161
Query: 104 LLGSGKAYADEQGVSSSRMS--YSRFLEYLDKDRVKKVDL 141
L GS E ++ MS YS FL ++ D V+KV++
Sbjct: 162 LPGS------EPRTQTTFMSVPYSDFLSKVNNDEVQKVEV 195
Score = 40 (19.1 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 96 GNVGVGTALLGSGKA--YADEQGVSSSRMSYSRFLEYL-DKDR 135
G G G + G G+ +AD GV ++ +E+L + DR
Sbjct: 312 GGPG-GGKVSGDGETITFADVAGVDEAKEELEEIVEFLKNPDR 353
>TAIR|locus:2057386 [details] [associations]
symbol:ftsh4 "FTSH protease 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=ISS] [GO:0016020
"membrane" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0009536 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0005743 GO:GO:0046872 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
EMBL:AC004747 GO:GO:0004176 HOGENOM:HOG000217276 EMBL:AK220842
IPI:IPI00534293 PIR:T02610 RefSeq:NP_565616.1 UniGene:At.23415
ProteinModelPortal:O80983 SMR:O80983 STRING:O80983 MEROPS:M41.004
PaxDb:O80983 PRIDE:O80983 EnsemblPlants:AT2G26140.1 GeneID:817154
KEGG:ath:AT2G26140 GeneFarm:2508 TAIR:At2g26140 InParanoid:O80983
OMA:HTEGALP PhylomeDB:O80983 ProtClustDB:CLSN2688437
Genevestigator:O80983 Uniprot:O80983
Length = 717
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 210/455 (46%), Positives = 287/455 (63%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
Q ++ F DV GVDEAK + E+V +L+ P+RFT +G ++PKGVLLVGPPGTGKT+L
Sbjct: 217 QPSMDSSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTML 276
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+AIAGEAGVPFFS SGSEF EMFVGVGA RVRDLF AK+ +PCI+F+DEIDA+
Sbjct: 277 ARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRN 336
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
+ TLNQ+L E+DGF+ N GIIV+AATN + LD AL+RPGRFDR + V
Sbjct: 337 PKD---QQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPN 393
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GR +IL+ H S DV L +IA TPGFSG G ++
Sbjct: 394 PDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVT 453
Query: 487 SKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG 544
+++ + DRI+ G E V++D +S+ L A+HE GHA+ T G PV K T+VPRG
Sbjct: 454 MSDLEFAKDRIMMGSERKSAVISD-ESRKLTAFHEGGHALVAIHTEGALPVHKATIVPRG 512
Query: 545 QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLA 604
A G+ +P D T IS++Q+ AR+ +GGR AEE+IFGE EVT+GA+ DL+Q T LA
Sbjct: 513 MALGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLA 572
Query: 605 KQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIA 663
+ MVT FGMS E+G L+ + + SMS + I++ VK+L ++AY A
Sbjct: 573 RAMVTKFGMSKEVG---LVAHNYDDN-------GKSMSTETRLLIESEVKQLLEKAYNNA 622
Query: 664 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
+ + + + + LL+ ET+SG + + +L++
Sbjct: 623 KTILTVYNKELHALANALLQHETLSGKQIKELLTD 657
>UNIPROTKB|A6QR12 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008283 "cell proliferation" evidence=ISS] [GO:0005743
"mitochondrial inner membrane" evidence=ISS] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0005743
GO:GO:0008283 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005 HOGENOM:HOG000217276
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 CTD:10730
HOVERGEN:HBG057127 OMA:HTSHVSA OrthoDB:EOG4KH2TK EMBL:DAAA02035354
EMBL:BC150071 IPI:IPI00866889 RefSeq:NP_001095320.1 UniGene:Bt.1786
SMR:A6QR12 STRING:A6QR12 Ensembl:ENSBTAT00000021868 GeneID:505118
KEGG:bta:505118 InParanoid:A6QR12 NextBio:20866987 Uniprot:A6QR12
Length = 717
Score = 935 (334.2 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
Identities = 202/446 (45%), Positives = 278/446 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 395
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 396 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 455
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 456 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 515
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 516 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 575
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTG--AAGDLQQITGLAKQMVTT 610
+P +D ++ QL A++ +GGR AEE+IFG +TTG A+ D T +AK+MVT
Sbjct: 576 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGSDHITTGYCASSDFDNATKIAKRMVTK 635
Query: 611 FGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
FGMSE +M S +G +S + I+ ++ L +YE A ++ +
Sbjct: 636 FGMSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRDSYERAKHILKTH 683
Query: 671 REAIDKIVEVLLEKETMSGDEFRAIL 696
+ + E LL ET+ E + +L
Sbjct: 684 AKEHKNLAEALLTYETLDAKEIQIVL 709
Score = 42 (19.8 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 56 HLLFNSSFRSLEKKPKVAVVKASLSQKQH 84
HL+ ++F S + P V AS+SQ QH
Sbjct: 18 HLI--NAFHSPKNTP--VSVSASISQNQH 42
>UNIPROTKB|F1NTK8 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:AADN02000548 IPI:IPI00601077
Ensembl:ENSGALT00000012112 Uniprot:F1NTK8
Length = 712
Score = 937 (334.9 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 202/444 (45%), Positives = 277/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P +FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 275 VTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 334
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R LF++AK NAPC++F+DE+D+V +
Sbjct: 335 ADVPFYYASGSEFDEMFVGVGASRIRSLFREAKANAPCVIFIDELDSVGGKRIESPM--H 392
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+++I ATN + LD+AL+RPGRFD QVTV PD+RGRT
Sbjct: 393 PYSRQTINQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVTVPKPDVRGRT 452
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + K+D V ++IA T GFSG GK ++ KE++ S
Sbjct: 453 EILKWYLNKIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFS 512
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++ RG G
Sbjct: 513 KDKILMGPERRSVEIDEKNKTITAYHESGHAIIAYYTKDAMPINKATIMTRGTTLGHVSL 572
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGRAAEE+IFG +TTGA+ D T +AK MVT FG
Sbjct: 573 LPENDRWSETRSQLLAQMDVCMGGRAAEELIFGSDHITTGASSDFDNATKIAKLMVTRFG 632
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M + +G V S + I+ V+ L +YE A + ++ + +
Sbjct: 633 MSE--KLGVMTYTDTGKV----------SPETQSAIEQEVRTLLRDSYERAKNILKTHAK 680
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL+ ET+ E + +L
Sbjct: 681 EHKNLAEALLKYETLDAKEIQIVL 704
Score = 38 (18.4 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 115 QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGT-IAIVEAISPELGNRVQRVRVQLPGLSQ 173
+G +++ + L+ L + R+ LF +AI + P G+ VR + +
Sbjct: 205 EGFLKAQVFLQKTLDSLRRSRLLSFFLFVLCFYLAIYSSFLPGKGSFSDAVRFRTSSIFD 264
Query: 174 ELLQKFREKNIDF 186
+ + KN+ F
Sbjct: 265 AAVDPIQLKNVTF 277
>POMBASE|SPBC543.09 [details] [associations]
symbol:yta12 "mitochondrial m-AAA protease Yta12
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005745 "m-AAA complex" evidence=ISO] [GO:0006091 "generation
of precursor metabolites and energy" evidence=NAS] [GO:0006465
"signal peptide processing" evidence=ISO] [GO:0006508 "proteolysis"
evidence=ISO] [GO:0008237 "metallopeptidase activity" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=ISO] [GO:0045041 "protein import into
mitochondrial intermembrane space" evidence=ISO] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC543.09
GO:GO:0005524 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0004222 GO:GO:0006091
GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
KO:K08956 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 OMA:LYRFVTT
OrthoDB:EOG4J14HG GO:GO:0005745 GO:GO:0045041 GO:GO:0006465
GO:GO:0033108 RefSeq:NP_596797.1 ProteinModelPortal:Q9HGM3
SMR:Q9HGM3 STRING:Q9HGM3 MEROPS:M41.A14 EnsemblFungi:SPBC543.09.1
GeneID:2541079 KEGG:spo:SPBC543.09 NextBio:20802192 Uniprot:Q9HGM3
Length = 773
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 206/463 (44%), Positives = 290/463 (62%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+S+AK F E + + F DVAGVDEAK++ ME V+FLK P+ + +GA+IP+G +L GPP
Sbjct: 279 KSRAKMFNHETDIKIKFADVAGVDEAKEEIMEFVKFLKNPKFYERLGAKIPRGAILSGPP 338
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGEA VPF S+SGSEF+EMFVGVG SRVRDLF A++NAPCI+F+DEID
Sbjct: 339 GTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEID 398
Query: 360 AVXXXXXXXXXX-XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418
A+ NDERE TLNQLL EMDGF + I+V A TNR D+LD ALLRPGRF
Sbjct: 399 AIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRF 458
Query: 419 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXX 474
DRQ+T+D PDI GR +I KVH + K AD ++D+IA R T GF+G
Sbjct: 459 DRQITIDRPDIGGREQIFKVHLKHIKA-AD-NIDLIAKRLAVLTSGFTGADIMNVCNEGA 516
Query: 475 XXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHD 533
R + + +I+R+ AG+E + + + K+ VA+HE GHA+ G D
Sbjct: 517 LIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVD 576
Query: 534 PVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGA 593
P+ KV+++PR QA G ++P D L+S+ Q+ ++ L GR +EE+ FG ++T+GA
Sbjct: 577 PLLKVSIIPRAQALGYASYLPKDQ-YLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGA 635
Query: 594 AGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVK 653
+ D Q++T +A+ VT +GMS P G+ + + R + SE A+ ID ++
Sbjct: 636 SDDFQKVTRMAQAYVTQYGMS---PTV---GTIAYPIDTRETVQKPFSEATAQMIDEEIR 689
Query: 654 RLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+L AYE + +++ ++ I + LL+KE ++ +E IL
Sbjct: 690 KLVKHAYERTKKLLLEHKQGLENIAQRLLQKEVITYNEVETIL 732
>UNIPROTKB|F1LN92 [details] [associations]
symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
Uniprot:F1LN92
Length = 802
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 202/462 (43%), Positives = 282/462 (61%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 292 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPG 350
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 351 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 410
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD ALLRPGRFDR
Sbjct: 411 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDR 470
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D+ + D +A + TPGFSG
Sbjct: 471 QIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALI 530
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R AI+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 531 AARHLSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPL 590
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +K+QL R+ LGGR +EE+ FG +TTGA
Sbjct: 591 LKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQD 647
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 648 DLRKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARMIDDEVRI 702
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L AY+ ++ + + ++K+ +LLEKE + ++ +L
Sbjct: 703 LISEAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 744
>MGI|MGI:1351651 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0006515
"misfolded or incompletely synthesized protein catabolic process"
evidence=ISO] [GO:0007005 "mitochondrion organization"
evidence=ISO] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008283
"cell proliferation" evidence=ISO] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
MGI:MGI:1351651 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 GeneTree:ENSGT00550000074836 KO:K08955
CTD:10730 HOVERGEN:HBG057127 OMA:HTSHVSA EMBL:AF090430
EMBL:AY136286 EMBL:AY136287 EMBL:AK079175 EMBL:BC007128
IPI:IPI00136555 RefSeq:NP_038799.1 UniGene:Mm.23335
ProteinModelPortal:O88967 SMR:O88967 STRING:O88967
PhosphoSite:O88967 PaxDb:O88967 PRIDE:O88967
Ensembl:ENSMUST00000028117 GeneID:27377 KEGG:mmu:27377
InParanoid:O88967 OrthoDB:EOG4KH2TK NextBio:305300 Bgee:O88967
CleanEx:MM_YME1L1 Genevestigator:O88967
GermOnline:ENSMUSG00000026775 Uniprot:O88967
Length = 715
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 202/444 (45%), Positives = 278/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 395
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 396 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 455
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 456 EILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 515
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 516 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 575
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 576 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 635
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M S +G +S + I+ ++ L +YE A ++ + +
Sbjct: 636 MSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAK 683
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL ET+ E + +L
Sbjct: 684 EHKNLAEALLTYETLDAKEIQIVL 707
>UNIPROTKB|G3V886 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382 RGD:620764
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 KO:K08955 MEROPS:M41.A20 OMA:HTSHVSA
UniGene:Rn.8153 EMBL:CH474100 RefSeq:XP_003751780.1
Ensembl:ENSRNOT00000023395 GeneID:100910779 KEGG:rno:100910779
Uniprot:G3V886
Length = 715
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 202/444 (45%), Positives = 278/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 395
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 396 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 455
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 456 EILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 515
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 516 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 575
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 576 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 635
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M S +G +S + I+ ++ L +YE A ++ + +
Sbjct: 636 MSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAK 683
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL ET+ E + +L
Sbjct: 684 EHKNLAEALLTYETLDAKEIQIVL 707
>UNIPROTKB|F1PRV6 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AAEX03001169
Ensembl:ENSCAFT00000007090 Uniprot:F1PRV6
Length = 748
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 202/444 (45%), Positives = 278/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 312 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 371
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 372 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 429
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 430 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 489
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 490 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 549
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 550 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 609
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 610 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 669
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M S +G +S + I+ ++ L +YE A ++ + +
Sbjct: 670 MSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAK 717
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL ET+ E + +L
Sbjct: 718 EHKNLAEALLTYETLDAKEIQIVL 741
>MGI|MGI:1916847 [details] [associations]
symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IGI] [GO:0040014
"regulation of multicellular organism growth" evidence=IMP]
[GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
"myelination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
[GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
Length = 802
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 202/462 (43%), Positives = 281/462 (60%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 292 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPG 350
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 351 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 410
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD ALLRPGRFDR
Sbjct: 411 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDR 470
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D+ + D +A + TPGFSG
Sbjct: 471 QIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALI 530
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R AI+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 531 AARHLSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPL 590
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +K+QL R+ LGGR +EE+ FG +TTGA
Sbjct: 591 LKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQD 647
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 648 DLRKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARMIDDEVRI 702
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L AY ++ + + ++K+ +LLEKE + ++ +L
Sbjct: 703 LISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQLL 744
>TAIR|locus:2066128 [details] [associations]
symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
Genevestigator:Q84WU8 Uniprot:Q84WU8
Length = 809
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 203/450 (45%), Positives = 275/450 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ F DVAG DEAKQ+ ME V FLK P+++ +GA+IPKG LLVGPPGTGKTLLAKA AGE
Sbjct: 319 IYFKDVAGCDEAKQEIMEFVHFLKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 378
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
+GVPF SISGS+F+EMFVGVG SRVR LF++A++ AP I+F+DEIDA+ N
Sbjct: 379 SGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGN 438
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
DERE TLNQLL EMDGF G++V+A TNR DILD ALLRPGRFDRQ+T+D PDI+GR
Sbjct: 439 DERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRD 498
Query: 434 EILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
+I K++ K D + S +A TPGF+G R A ++ +
Sbjct: 499 QIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFE 558
Query: 492 DSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GL 549
+IDR++ G+E K + VAYHE GHA+ G +P+ KVT+VPRG A G
Sbjct: 559 SAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGF 618
Query: 550 TWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVT 609
++P+++ L++K+QLF LGGRAAE+V+ G+ ++TGA DL+++T + V
Sbjct: 619 AQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIGK--ISTGAQNDLEKVTKMTYAQVA 675
Query: 610 TFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIR 668
+G S+ +G S D S K ID V+ +AYE + +
Sbjct: 676 VYGFSDKVGLLSFPPRDDGYDF------SKPYSNKTGAIIDEEVRDWVAKAYERTVELVE 729
Query: 669 NNREAIDKIVEVLLEKETMSGDEFRAILSE 698
++ + +I E+LLEKE + D+ IL E
Sbjct: 730 EHKVKVAEIAELLLEKEVLHQDDLLKILGE 759
>UNIPROTKB|Q9Y4W6 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
"neuromuscular junction development" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
development" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
Length = 797
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 201/462 (43%), Positives = 283/462 (61%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 293 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPG 351
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 352 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 411
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD ALLRPGRFDR
Sbjct: 412 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDR 471
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D+ + D +A + TPGFSG
Sbjct: 472 QIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALI 531
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R +I+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 532 AARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPL 591
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +K+QL R+ LGGR +EE+ FG +TTGA
Sbjct: 592 LKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQD 648
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 649 DLRKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARLIDDEVRI 703
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L + AY+ ++ + + ++K+ +LLEKE + ++ +L
Sbjct: 704 LINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 745
>UNIPROTKB|E1BFQ0 [details] [associations]
symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
Uniprot:E1BFQ0
Length = 802
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 204/449 (45%), Positives = 277/449 (61%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLA 307
++ + GV F DVAG +EAK + ME V FLK P+++ +GA+IPKG LL GPPGTGKTLLA
Sbjct: 294 IKDDIGVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGALLTGPPGTGKTLLA 353
Query: 308 KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXX 367
KA AGEAGVPF +++GSEF+EMFVGVG +RVRD+F A++NAPCI+FVDEIDA+
Sbjct: 354 KATAGEAGVPFITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFVDEIDAIGRKRGR 413
Query: 368 XXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
E+E TLNQLL EMDGF T ++V+A TNR D+LD AL+RPGRFDRQ+ + P
Sbjct: 414 GHFGGQSEQENTLNQLLVEMDGFNSTTNVVVLAGTNRPDVLDPALMRPGRFDRQIYIGPP 473
Query: 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGF--SGXXXXXXXXXXXXXXGRRG 481
DI+GR+ I +VH K D +S D +A + TPGF SG R
Sbjct: 474 DIKGRSSIFRVHLRPLKLDESLSKDALARKLAALTPGFTGSGADISNVCNEAALIAARHL 533
Query: 482 KAAISSKEIDDSIDRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVT 539
++ K + +I+R++ G+E V+ G+ K VAYHE GHA+ G DP+ KV+
Sbjct: 534 NPSVGEKHFEQAIERVIGGLEKKTQVLQPGE-KMTVAYHEAGHAVVGWFLEHADPLLKVS 592
Query: 540 LVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQ 599
+VPRG+ G +P + L +++QLF R+ LGGR AE++ FG VTTGA DL++
Sbjct: 593 IVPRGKGLGYAQCLPREQ-YLYTREQLFDRMCAMLGGRVAEQLFFGR--VTTGAQDDLRK 649
Query: 600 ITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDR 658
+T A + FGMSE +G S D + G+ ++ SE A+ ID V+RL
Sbjct: 650 VTQSAYAQIVQFGMSEKLGQVSF-DLPRPGEALVE----KPFSEATAQLIDEEVRRLIGS 704
Query: 659 AYEIALSQIRNNREAIDKIVEVLLEKETM 687
A+ L + RE +DK+ LLEKE +
Sbjct: 705 AHARTLDLLTRCREQVDKVGRRLLEKEVL 733
>UNIPROTKB|E1BZ74 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
Uniprot:E1BZ74
Length = 805
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 201/462 (43%), Positives = 280/462 (60%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 293 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYEDLGAKIPKGAILTGPPG 351
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF +++GSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 352 TGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 411
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD AL+RPGRFDR
Sbjct: 412 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDR 471
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D + D +A + TPGFSG
Sbjct: 472 QIYIGPPDIKGRASIFKVHLRPLKLDTVLDKDNLARKLASLTPGFSGADIANVCNEAALI 531
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R AI+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 532 AARHLSDAINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFLEHADPL 591
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +K+QL R+ LGGR +E++ FG +TTGA
Sbjct: 592 LKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEQIFFGR--ITTGAQD 648
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 649 DLKKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARMIDEEVRS 703
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L + AY+ LS + + ++K+ LLEKE + + +L
Sbjct: 704 LINIAYDRTLSLLTEKKAEVEKVALRLLEKEVLDKSDMVDLL 745
>UNIPROTKB|F1N9N5 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
Uniprot:F1N9N5
Length = 635
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 201/462 (43%), Positives = 280/462 (60%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 137 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYEDLGAKIPKGAILTGPPG 195
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF +++GSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 196 TGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 255
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD AL+RPGRFDR
Sbjct: 256 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDR 315
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D + D +A + TPGFSG
Sbjct: 316 QIYIGPPDIKGRASIFKVHLRPLKLDTVLDKDNLARKLASLTPGFSGADIANVCNEAALI 375
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R AI+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 376 AARHLSDAINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFLEHADPL 435
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +K+QL R+ LGGR +E++ FG +TTGA
Sbjct: 436 LKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEQIFFGR--ITTGAQD 492
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 493 DLKKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARMIDEEVRS 547
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L + AY+ LS + + ++K+ LLEKE + + +L
Sbjct: 548 LINIAYDRTLSLLTEKKAEVEKVALRLLEKEVLDKSDMVDLL 589
>UNIPROTKB|E2QYF3 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
formation" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
Uniprot:E2QYF3
Length = 806
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 202/469 (43%), Positives = 286/469 (60%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 294 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPG 352
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 353 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 412
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD AL+RPGRFDR
Sbjct: 413 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDR 472
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D+ + + +A + TPGFSG
Sbjct: 473 QIFIGPPDIKGRASIFKVHLRPLKLDSALEKEKLARKLASLTPGFSGADVANVCNEAALI 532
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R +I+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 533 AARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPL 592
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +K+QL R+ LGGR +EE+ FG +TTGA
Sbjct: 593 LKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQD 649
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 650 DLRKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARLIDDEVRI 704
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE--FVE 701
L + AY+ ++ + + ++K+ +LLEKE + ++ +L FVE
Sbjct: 705 LINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLGPRPFVE 753
>ZFIN|ZDB-GENE-070912-46 [details] [associations]
symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
Length = 800
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 198/451 (43%), Positives = 276/451 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPGTGKTLLAKA AGE
Sbjct: 300 VKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGE 359
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF +++GSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDAV
Sbjct: 360 ANVPFITVNGSEFLEMFVGVGPARVRDLFVLARKNAPCILFIDEIDAVGRKRGRGNFGGQ 419
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E+E TLNQLL EMDGF T ++V+A TNR DILD AL+RPGRFDRQ+ + PDI+GR
Sbjct: 420 SEQENTLNQLLVEMDGFNTATNVVVLAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRA 479
Query: 434 EILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
I KVH K +A++ + +A + TPGFSG R AI+ K
Sbjct: 480 SIFKVHLRPLKLEAELDKEALARKMAALTPGFSGADIANVCNEAALIAARHLSDAINQKH 539
Query: 490 IDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARG 548
+ +I+R++ G+E T + + K VAYHE GHA+ G DP+ KV+++PRG+ G
Sbjct: 540 FEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWFLEHADPLLKVSIIPRGKGLG 599
Query: 549 LTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMV 608
++P + L +K+QL R+ LGGR +EE+ FG +TTGA DL+++T A +
Sbjct: 600 YAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQDDLKKVTQSAYAQI 656
Query: 609 TTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQI 667
FGM+E +G S D + G++++ SE A ID V+ L AYE +
Sbjct: 657 VQFGMNEKVGQVSF-DLPRQGELVLE----KPYSEATARLIDTEVRNLISTAYERTQQLL 711
Query: 668 RNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
+ + ++K+ LLEKE + ++ +L +
Sbjct: 712 SDKKPEVEKVALRLLEKEVLDKNDMVELLGK 742
>UNIPROTKB|F1P519 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006515 "misfolded
or incompletely synthesized protein catabolic process"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005743 GO:GO:0008283 GO:GO:0004222
GO:GO:0006515 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
GeneTree:ENSGT00550000074836 OMA:HTSHVSA EMBL:AADN02000548
IPI:IPI00822340 Ensembl:ENSGALT00000038444 Uniprot:F1P519
Length = 717
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 202/444 (45%), Positives = 277/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P +FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 280 VTFEHVKGVEEAKQELQEVVEFLKNPHKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 339
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R LF++AK NAPC++F+DE+D+V +
Sbjct: 340 ADVPFYYASGSEFDEMFVGVGASRIRSLFREAKANAPCVIFIDELDSVGGKRIESPM--H 397
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+++I ATN + LD+AL+RPGRFD QVTV PD+RGRT
Sbjct: 398 PYSRQTINQLLAEMDGFKPNEGVVIIGATNFPEALDNALIRPGRFDMQVTVPKPDVRGRT 457
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + K+D V ++IA T GFSG GK ++ KE++ S
Sbjct: 458 EILKWYLNKIKYDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFS 517
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++ RG G
Sbjct: 518 KDKILMGPERRSVEIDEKNKTITAYHESGHAIIAYYTKDAMPINKATIMTRGTTLGHVSL 577
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGRAAEE+IFG +TTGA+ D T +AK MVT FG
Sbjct: 578 LPENDRWSETRSQLLAQMDVCMGGRAAEELIFGSDHITTGASSDFDNATKIAKLMVTRFG 637
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M + +G V S + I+ V+ L +YE A + ++ + +
Sbjct: 638 MSE--KLGVMTYTDTGKV----------SPETQSAIEQEVRTLLRDSYERAKNILKTHAK 685
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL+ ET+ E + +L
Sbjct: 686 EHKNLAEALLKYETLDAKEIQIVL 709
>SGD|S000000819 [details] [associations]
symbol:AFG3 "Component, with Yta12p, of the mitochondrial
inner membrane m-AAA pro" species:4932 "Saccharomyces cerevisiae"
[GO:0016887 "ATPase activity" evidence=ISS;IMP;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0031966 "mitochondrial
membrane" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA;IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA;IMP]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IDA] [GO:0001302 "replicative cell
aging" evidence=IMP] [GO:0002181 "cytoplasmic translation"
evidence=IMP] [GO:0045041 "protein import into mitochondrial
intermembrane space" evidence=TAS] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006461 "protein complex assembly"
evidence=IMP] [GO:0006465 "signal peptide processing" evidence=IMP]
[GO:0005745 "m-AAA complex" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 SGD:S000000819
GO:GO:0005524 GO:GO:0006461 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0008237 GO:GO:0001302 GO:GO:0004222
GO:GO:0016887 EMBL:BK006939 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
TIGRFAMs:TIGR01241 OMA:LYRFVTT EMBL:X81066 EMBL:X76643 EMBL:U18778
PIR:S46611 RefSeq:NP_010933.1 ProteinModelPortal:P39925 SMR:P39925
DIP:DIP-802N IntAct:P39925 MINT:MINT-563722 STRING:P39925
MEROPS:M41.002 PaxDb:P39925 PeptideAtlas:P39925
EnsemblFungi:YER017C GeneID:856737 KEGG:sce:YER017C CYGD:YER017c
OrthoDB:EOG4J14HG NextBio:982861 Genevestigator:P39925
GermOnline:YER017C GO:GO:0005745 GO:GO:0097002 GO:GO:0002181
GO:GO:0045041 GO:GO:0006465 Uniprot:P39925
Length = 761
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 207/468 (44%), Positives = 284/468 (60%)
Query: 241 QSKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+S+AK F E + ++F +VAG DEAKQ+ ME V FLK P ++T +GA+IP+G +L GPP
Sbjct: 271 KSRAKLFNKETDIKISFKNVAGCDEAKQEIMEFVHFLKNPGKYTKLGAKIPRGAILSGPP 330
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGEA VPF S+SGSEFVEMFVGVGASRVRDLF +A+ AP I+F+DEID
Sbjct: 331 GTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEID 390
Query: 360 AVXXXXXXXXXX--XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGR 417
A+ NDERE TLNQLL EMDGF + ++V+A TNR D+LD+AL+RPGR
Sbjct: 391 AIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGR 450
Query: 418 FDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDV------IAMRTPGFSGXXXXXXXX 471
FDR + +D PD+ GR +I VH D ++ D+ +A TPGF+G
Sbjct: 451 FDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACN 510
Query: 472 XXXXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTP 530
R I+ + +I+R++AG+E T + + K VAYHE GHA+CG
Sbjct: 511 EAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVCGWFLK 570
Query: 531 GHDPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEV 589
DP+ KV+++PRGQ A G ++P D LIS++Q R++ LGGR +EE+ F P V
Sbjct: 571 YADPLLKVSIIPRGQGALGYAQYLPPDQ-YLISEEQFRHRMIMALGGRVSEELHF--PSV 627
Query: 590 TTGAAGDLQQITGLAKQMVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDI 648
T+GA D +++T +A MVT+ GMS +IG S D G+ S K A I
Sbjct: 628 TSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSF-D-QNDGN----FKVNKPFSNKTARTI 681
Query: 649 DAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
D VK + D A+ + N + +D + + LL KE ++ ++ +L
Sbjct: 682 DLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMIRLL 729
>UNIPROTKB|Q2KJI7 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
Uniprot:Q2KJI7
Length = 805
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 198/462 (42%), Positives = 283/462 (61%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 294 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPG 352
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEIDA
Sbjct: 353 TGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDA 412
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E+E TLNQLL EMDGF T ++++A TNR DILD AL+RPGRFDR
Sbjct: 413 VGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDR 472
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR I KVH K D+ + + +A + TPGFSG
Sbjct: 473 QIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALI 532
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R +I+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP+
Sbjct: 533 AARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPL 592
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +++QL R+ LGGR +EE+ FG +TTGA
Sbjct: 593 LKVSIIPRGKGLGYAQYLPREQ-YLYTREQLLDRMCMTLGGRVSEEIFFGR--ITTGAQD 649
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGM+E +G S D + GD+++ SE A ID V+
Sbjct: 650 DLRKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARLIDDEVRI 704
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L + AY+ ++ + + ++K+ +LLEKE + ++ +L
Sbjct: 705 LINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELL 746
>UNIPROTKB|J9NRR9 [details] [associations]
symbol:YME1L1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0016020
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 GeneTree:ENSGT00550000074836 EMBL:AAEX03001169
Ensembl:ENSCAFT00000045217 Uniprot:J9NRR9
Length = 694
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 197/400 (49%), Positives = 264/400 (66%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 395
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 396 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 455
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 456 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 515
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 516 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 575
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 576 LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 635
Query: 613 MSE-IGPWSLMD-G-----SQSG-DVIMRMMARNSMSEKL 644
MSE +G + D G +QS + +R++ RN EKL
Sbjct: 636 MSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRNDKMEKL 675
>MGI|MGI:1928277 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
[GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
Uniprot:Q920A7
Length = 789
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 197/453 (43%), Positives = 278/453 (61%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ N V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 285 ETTAKI-LKNNIDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPG 343
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF +++GSEF+EMFVGVG +RVRD+F A+++APCI+F+DEIDA
Sbjct: 344 TGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDA 403
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ E+E TLNQ+L EMDGF +T ++V+A TNR DILD AL RPGRFDR
Sbjct: 404 IGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDR 463
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR+ I KVH K D +S D ++ + TPGF+G
Sbjct: 464 QIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALI 523
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R ++ + + +I+R++ G+E T + K+ VAYHE GHA+ G DP+
Sbjct: 524 AARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPL 583
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +++QLF R+ LGGR AE++ FG+ +TTGA
Sbjct: 584 LKVSIIPRGKGLGYAQYLPREQ-FLYTREQLFDRMCMMLGGRVAEQLFFGQ--ITTGAQD 640
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGMSE +G S D + G+ M SE A+ ID V+
Sbjct: 641 DLRKVTQSAYAQIVQFGMSEKLGQVSF-DFPRQGET----MVEKPYSEATAQLIDEEVRC 695
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETM 687
L AY L + RE ++K+ LLEKE +
Sbjct: 696 LVRSAYNRTLELLTQCREQVEKVGRRLLEKEVL 728
>RGD|620764 [details] [associations]
symbol:Yme1l1 "YME1-like 1 (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO;ISS] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO;ISS]
[GO:0007005 "mitochondrion organization" evidence=ISO;ISS]
[GO:0008283 "cell proliferation" evidence=ISO;ISS] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 RGD:620764 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008283 GO:GO:0004222 GO:GO:0006515
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
HOGENOM:HOG000217276 MEROPS:M41.A20 HOVERGEN:HBG057127
OrthoDB:EOG4KH2TK EMBL:AF151784 IPI:IPI00206065 UniGene:Rn.8153
ProteinModelPortal:Q925S8 SMR:Q925S8 MINT:MINT-4611841
STRING:Q925S8 PRIDE:Q925S8 UCSC:RGD:620764 InParanoid:Q925S8
Genevestigator:Q925S8 GermOnline:ENSRNOG00000017100 Uniprot:Q925S8
Length = 715
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 201/444 (45%), Positives = 276/444 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAKQ+ EVVEFLK P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 278 VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 337
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 338 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIEFPM--H 395
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+ QLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 396 PYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 455
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + + KFD V ++IA T GFSG GK ++ KE++ S
Sbjct: 456 EILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS 515
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D K+K++ AYHE GHAI T P+ K T++PRG G
Sbjct: 516 KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSL 575
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D + QL A++ +GGR AEE+IFG +TTGA+ D T +AK+MVT FG
Sbjct: 576 LPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFG 635
Query: 613 MSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
MSE +M S +G +S + I+ ++ L +YE A ++ + +
Sbjct: 636 MSE--KLGVMTYSDTG----------KLSPETQSAIEQEIRILLRESYERAKHILKTHAK 683
Query: 673 AIDKIVEVLLEKETMSGDEFRAIL 696
+ E LL ET+ E + +L
Sbjct: 684 EHKNLAEALLTYETLDAKEIQIVL 707
>FB|FBgn0034792 [details] [associations]
symbol:CG3499 species:7227 "Drosophila melanogaster"
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
EMBL:AE013599 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9LCZ4 GeneTree:ENSGT00550000074836
KO:K08955 EMBL:AY051480 RefSeq:NP_726263.1 UniGene:Dm.4589
SMR:Q9W1Y0 IntAct:Q9W1Y0 MINT:MINT-924656
EnsemblMetazoa:FBtr0071906 GeneID:37636 KEGG:dme:Dmel_CG3499
UCSC:CG3499-RB FlyBase:FBgn0034792 InParanoid:Q9W1Y0
OrthoDB:EOG4Z613M GenomeRNAi:37636 NextBio:804672 Uniprot:Q9W1Y0
Length = 736
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 197/454 (43%), Positives = 281/454 (61%)
Query: 247 QMEPNT-GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
+++P VTF+DV G DEAKQ+ EVVEFLK PE+F+ +G ++PKGVLLVGPPGTGKTL
Sbjct: 289 EVDPEEINVTFEDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKLPKGVLLVGPPGTGKTL 348
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
LA+A+AGEA VPFF +G EF E+ VG GA RVRDLFK AK APC++F+DEID+V
Sbjct: 349 LARAVAGEAKVPFFHAAGPEFDEVLVGQGARRVRDLFKAAKARAPCVIFIDEIDSVGAKR 408
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
+ QT+NQLL+EMDGF N G+IV+ ATNR D LD ALLRPGRFD +V V
Sbjct: 409 TNSVL--HPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRFDVEVMVS 466
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
PD GR EIL ++ + D ++ LD++A T GF+G G +
Sbjct: 467 TPDFTGRKEILSLYLTKILHD-EIDLDMLARGTSGFTGADLENMINQAALRAAIDGAETV 525
Query: 486 SSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG 544
S K ++ + D+++ G E + D ++ ++ AYHE GHAI T P+ KVT++PRG
Sbjct: 526 SMKHLETARDKVLMGPERKARLPDEEANTITAYHEGGHAIVAFYTKESHPLHKVTIMPRG 585
Query: 545 QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLA 604
+ G T +IP + ++K QL A + +GGRAAEE++FG ++T+GA+ DL+Q T +A
Sbjct: 586 PSLGHTAYIPEKERYHVTKAQLLAMMDTMMGGRAAEELVFGTDKITSGASSDLKQATSIA 645
Query: 605 KQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIAL 664
MV +GMS+ ++ S+ + +++ E +DA +KR+ +YE A
Sbjct: 646 THMVRDWGMSDKVGLRTIEASKG------LGTGDTLGPNTIEAVDAEIKRILSDSYERAK 699
Query: 665 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
+ +R + + E LL+ ET+ D+ +AIL+E
Sbjct: 700 AILRKHTREHKALAEALLKYETLDADDIKAILNE 733
>TAIR|locus:2025052 [details] [associations]
symbol:ftsh10 "FTSH protease 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
EMBL:AC022464 ProtClustDB:CLSN2692039 EMBL:AY064138 EMBL:AY124808
EMBL:AK230173 IPI:IPI00520253 PIR:H86209 RefSeq:NP_172231.2
UniGene:At.23339 ProteinModelPortal:Q8VZI8 SMR:Q8VZI8 STRING:Q8VZI8
MEROPS:M41.023 PaxDb:Q8VZI8 PRIDE:Q8VZI8 EnsemblPlants:AT1G07510.1
GeneID:837265 KEGG:ath:AT1G07510 GeneFarm:2535 GeneFarm:2675
TAIR:At1g07510 InParanoid:Q8VZI8 OMA:YSEDTAM PhylomeDB:Q8VZI8
Genevestigator:Q8VZI8 Uniprot:Q8VZI8
Length = 813
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 201/451 (44%), Positives = 278/451 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ F DVAG +EAKQ+ ME V FL+ P+++ +GA+IPKG LLVGPPGTGKTLLAKA AGE
Sbjct: 324 IYFKDVAGCEEAKQEIMEFVHFLQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGE 383
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX- 372
+ VPF SISGS+F+EMFVGVG SRVR+LF++A++ AP I+F+DEIDA+
Sbjct: 384 SAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGG 443
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
NDERE TLNQLL EMDGF G++V+A TNR DILD ALLRPGRFDRQ+T+D PDI+GR
Sbjct: 444 NDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGR 503
Query: 433 TEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
+I +++ K D + S +A TPGF+G R A ++
Sbjct: 504 DQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHF 563
Query: 491 DDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-G 548
D +IDR++ G+E K + VAYHE GHA+ G +P+ KVT+VPRG A G
Sbjct: 564 DSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALG 623
Query: 549 LTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMV 608
++P+++ L++K+QLF LGGRAAE+V+ G ++TGA DL+++T + V
Sbjct: 624 FAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIGR--ISTGAQNDLEKVTKMTYAQV 680
Query: 609 TTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQI 667
+G S+ IG L+ Q D + S + ID V+ +AY+ + I
Sbjct: 681 AVYGFSDKIG---LLSFPQREDEFSK-----PYSNRTGAMIDEEVREWVGKAYKRTVELI 732
Query: 668 RNNREAIDKIVEVLLEKETMSGDEFRAILSE 698
++E + +I E+LLEKE + D+ +L E
Sbjct: 733 EEHKEQVAQIAELLLEKEVLHQDDLTKVLGE 763
>FB|FBgn0024992 [details] [associations]
symbol:CG2658 species:7227 "Drosophila melanogaster"
[GO:0006508 "proteolysis" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 HSSP:Q9LCZ4
HOGENOM:HOG000226301 MEROPS:M41.A12 EMBL:AL023874
ProteinModelPortal:O76867 SMR:O76867 PaxDb:O76867 PRIDE:O76867
FlyBase:FBgn0024992 InParanoid:O76867 OrthoDB:EOG4V6WXK
ArrayExpress:O76867 Bgee:O76867 Uniprot:O76867
Length = 819
Score = 901 (322.2 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 192/462 (41%), Positives = 283/462 (61%)
Query: 243 KAKFQM-EP---NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGP 298
+AKF + +P GV F DVAG+ EAKQ+ E V++LK PE++ +GA++P+G LL+GP
Sbjct: 323 RAKFTLVDPFDGGRGVLFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAKVPRGALLLGP 382
Query: 299 PGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEI 358
PG GKTLLAKA+A EA VPF S++GSEF+EM G+GA+RVRDLFK+ K+ APCI+++DEI
Sbjct: 383 PGCGKTLLAKAVATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEI 442
Query: 359 DAVXXXXXXXXXX---XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 415
DA+ + E EQTLNQLL EMDG G++++A+TNRADILD ALLRP
Sbjct: 443 DAIGRQRSGTESMGQGSSGESEQTLNQLLVEMDGMATKEGVLMLASTNRADILDKALLRP 502
Query: 416 GRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXX 473
GRFDR + +D+P + R EI + H S+ K ++ + +A TPGFSG
Sbjct: 503 GRFDRHILIDLPTLAERKEIFEKHLSSVKLESPPTTFSQRLARLTPGFSGADIANVCNEA 562
Query: 474 XXXXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGH 532
R + +SSK ++ +++R+V G E + + ++AYHE GHA+ G + P
Sbjct: 563 ALHAARNTQMEVSSKNLEYAVERLVGGTEKRSHALSLAERKVIAYHESGHALVGWMLPNS 622
Query: 533 DPVQKVTLVPRGQ-ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTT 591
D + KVT+VPR A G + PS+ L SK++LF ++ LGGRAAE ++F +TT
Sbjct: 623 DILLKVTIVPRTSLALGFAQYTPSEQH-LYSKEELFDKMCMALGGRAAENLVFNR--ITT 679
Query: 592 GAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQS-GDVIMRMMARNSMSEKLAEDID 649
GA DL+++T +A + FGM++ +GP + D ++ G M + S + ID
Sbjct: 680 GAQNDLEKVTKIAYSQIKKFGMNDTLGPIYVRDADETEGGGAMGSGGKKPFSRAMESMID 739
Query: 650 AAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDE 691
+ + AY+ + +R+ ++K+ E LLEKET+ D+
Sbjct: 740 NEARHVVASAYQTTEGILTTHRDKLEKLAEALLEKETLDYDQ 781
Score = 46 (21.3 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 106 GSGKAYADEQGVSSSRMSYSRFLEYL 131
G G + D G+S ++ F++YL
Sbjct: 335 GRGVLFRDVAGLSEAKQEVKEFVDYL 360
>RGD|1309722 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=ISO] [GO:0042407
"cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
ArrayExpress:F1LS61 Uniprot:F1LS61
Length = 761
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 196/453 (43%), Positives = 277/453 (61%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
++ AK ++ N V F DVAG +EAK + ME V FLK P+++ +GA+IPKG +L GPPG
Sbjct: 257 ETTAKI-LKNNIDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPG 315
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA AGEA VPF +++GSEF+EMFVGVG +RVRD+F A+++APCI+F+DEIDA
Sbjct: 316 TGKTLLAKATAGEAKVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDA 375
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ E+E TLNQ+L EMDGF T ++V+A TNR DILD AL RPGRFDR
Sbjct: 376 IGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSTTNVVVLAGTNRPDILDPALTRPGRFDR 435
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXX 476
Q+ + PDI+GR+ I KVH K D ++ D ++ + TPGF+G
Sbjct: 436 QIYIGPPDIKGRSSIFKVHLRPLKLDESLTRDALSRKLAALTPGFTGADISNVCNEAALI 495
Query: 477 XGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPV 535
R ++ + + +I+R++ G+E T + K+ VAYHE GHA+ G DP+
Sbjct: 496 AARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPL 555
Query: 536 QKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV+++PRG+ G ++P + L +++QLF R+ LGGR AE++ FG+ +TTGA
Sbjct: 556 LKVSIIPRGKGLGYAQYLPREQ-YLYTREQLFDRMCMMLGGRVAEQLFFGQ--ITTGAQD 612
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKR 654
DL+++T A + FGMSE +G S D + G+ M SE A+ ID V+
Sbjct: 613 DLRKVTQSAYAQIVQFGMSEKLGQVSF-DFPRQGET----MVEKPYSEATAQLIDEEVRC 667
Query: 655 LSDRAYEIALSQIRNNREAIDKIVEVLLEKETM 687
L AY L + RE ++K+ LLEKE +
Sbjct: 668 LVRSAYNRTLELLTQCREQVEKVGRRLLEKEVL 700
>ASPGD|ASPL0000029469 [details] [associations]
symbol:AN5588 species:162425 "Emericella nidulans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] [GO:0031942 "i-AAA
complex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
GO:GO:0004222 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01241 OMA:SEFDEVY EnsemblFungi:CADANIAT00003489
Uniprot:C8VG17
Length = 784
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 198/454 (43%), Positives = 286/454 (62%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
Q E T V F DV G DEAK + E+VEFL PERF+++G ++PKGVLLVGPPGTGKTLL
Sbjct: 306 QPEHQT-VRFSDVHGCDEAKDELQELVEFLLNPERFSSLGGKLPKGVLLVGPPGTGKTLL 364
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+A+AGEAGVPFF +SGSEF E++VGVGA RVR+LF +A+ +P I+F+DE+DA+
Sbjct: 365 ARAVAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFNQARSKSPAIIFIDELDAIGAKRN 424
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
+QTLNQLLTE+DGF +TG+I++AATN ++LD AL RPGRFDR+V VD+
Sbjct: 425 ERDAAYV---KQTLNQLLTELDGFSQSTGVIILAATNYPELLDKALTRPGRFDRKVVVDL 481
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+RGR +ILK H N + DV + VIA T GFSG R ++ ++
Sbjct: 482 PDVRGRMDILKHHMKNVQISTDVDVAVIARGTSGFSGADLENLVNQAAIFASRNKQSKVT 541
Query: 487 SKEIDDSIDRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG 544
K+ D + D+I+ G E ++ D K K L AYHE GHA+ +P P+ K+T++PRG
Sbjct: 542 PKDFDYAKDKIIMGAEARSRIIQD-KDKLLTAYHEAGHALVAYFSPSSMPLYKITIMPRG 600
Query: 545 QARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITG 602
+ G T F+P D ++SK Q + I +GG+ AEE+I+GE +VT+G + DL T
Sbjct: 601 MSLGSTHFLPEMD--MVSKNYVQYLSDIDVSMGGKVAEELIYGEDKVTSGISADLASATR 658
Query: 603 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEI 662
A +VT FG S+ + G+V + +S+S + ++I+A V+RL + A +
Sbjct: 659 TAFTLVTRFGYSK----------KLGNVDL-YANYDSLSSETKQEIEAEVRRLVEEARQR 707
Query: 663 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
A + + R ++ + + L++ ET++ +E +L
Sbjct: 708 ATNILTERRHELELLTKALIKYETLTKEEMEKVL 741
>ZFIN|ZDB-GENE-070410-25 [details] [associations]
symbol:yme1l1b "YME1-like 1b" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-070410-25 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 KO:K08955
MEROPS:M41.A20 HOVERGEN:HBG057127 EMBL:BC139529 IPI:IPI00614293
RefSeq:NP_001082983.1 UniGene:Dr.148676 ProteinModelPortal:A4QNU8
SMR:A4QNU8 STRING:A4QNU8 GeneID:557907 KEGG:dre:557907 CTD:557907
InParanoid:A4QNU8 NextBio:20882221 Uniprot:A4QNU8
Length = 722
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 198/445 (44%), Positives = 275/445 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF+ V GV+EAK + EVVEFL+ P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 285 VTFEHVKGVEEAKNELQEVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 344
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LF++AK NAPC++F+DE+D+V +
Sbjct: 345 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKGNAPCVIFIDELDSVGGKRIESPM--H 402
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+I+I ATN + LD+AL+RPGRFD QVTV PD++GRT
Sbjct: 403 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 462
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EILK + K D+ V +VIA T GFSG GK ++ KE++ +
Sbjct: 463 EILKWYLKKIKVDSAVEAEVIARGTVGFSGAELENLVNQAALKAAVDGKDMVTMKELEFA 522
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E + D ++K + AYHE GHAI T P+ K T++PRG G
Sbjct: 523 KDKILMGPERRSAEIDKRNKEITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSM 582
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE+IFG +TTGA+ D T +AK MVT FG
Sbjct: 583 LPENDRWSETRAQLLAQMDVSMGGRVAEELIFGNENITTGASSDFDSATKIAKMMVTRFG 642
Query: 613 MSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNR 671
MSE +G + D + + S + A I+ V+ L +YE A + +++
Sbjct: 643 MSEKLGVMTYSD-----------LTKQSPETQAA--IEHEVRILLRDSYERAKALLKSRA 689
Query: 672 EAIDKIVEVLLEKETMSGDEFRAIL 696
+ + E LL ET+ E + +L
Sbjct: 690 KEHRNLAEALLRYETLDAKEIQLVL 714
>WB|WBGene00010842 [details] [associations]
symbol:ymel-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:Z49128 PIR:T23690
RefSeq:NP_499298.2 ProteinModelPortal:P54813 SMR:P54813
MEROPS:M41.A11 PaxDb:P54813 EnsemblMetazoa:M03C11.5.1
EnsemblMetazoa:M03C11.5.2 GeneID:176460 KEGG:cel:CELE_M03C11.5
UCSC:M03C11.5.1 CTD:176460 WormBase:M03C11.5
GeneTree:ENSGT00550000074836 InParanoid:P54813 OMA:KWNQYES
NextBio:892672 Uniprot:P54813
Length = 723
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 200/447 (44%), Positives = 273/447 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTFDDV G+DEAK + E+V++LK PE+++ +G R+PKGVLLVGPPGTGKTLLA+AIAGE
Sbjct: 245 VTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLLARAIAGE 304
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPFF +GSEF E+ VG GA RVRDLF KAK APCI+F+DEID+V +
Sbjct: 305 AQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSVGSKRVSNSI--H 362
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL+EMDGF N GIIVIAATNR D LD ALLRPGRFD +VTV PD+ GR
Sbjct: 363 PYANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRV 422
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+I + S + V+A + GF+G ++ +D++
Sbjct: 423 DIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEVTMAYLDEA 482
Query: 494 IDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTW 551
DR++ G G + D ++ AYHE GH + T P+ KVT++PRGQ+ G T
Sbjct: 483 RDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPRGQSLGHTA 542
Query: 552 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTF 611
+P D ++K Q+ A + +GGR AEE+IFG+ +VTTGAA DL + T LA QMV F
Sbjct: 543 MLPEKDSYQLTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVF 602
Query: 612 GMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
GMS+ +G L D + D ++ + ++ + AE IDA + R+ +Y+ A +
Sbjct: 603 GMSDKVG---LRDFTAQ-DNESALVKVSDLAPQTAELIDAEINRVLQESYKRAKVILETK 658
Query: 671 REAIDKIVEVLLEKETMSGDEFRAILS 697
++ + E LLE ET+S DE + ++S
Sbjct: 659 KKEHQLLAEALLEYETLSADEVKRVIS 685
>ZFIN|ZDB-GENE-091113-41 [details] [associations]
symbol:yme1l1a "YME1-like 1a" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-091113-41 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 GO:GO:0006508
GO:GO:0004222 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
GeneTree:ENSGT00550000074836 EMBL:CU138525 IPI:IPI00962165
Ensembl:ENSDART00000110185 Uniprot:E7EZJ5
Length = 729
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 190/445 (42%), Positives = 280/445 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+TF+ V GV+EAK + +VVEFL+ P++FT +G ++PKG+LLVGPPGTGKTLLA+A+AGE
Sbjct: 292 ITFEHVKGVEEAKNELQDVVEFLRNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 351
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF+ SGSEF EMFVGVGASR+R+LFK+AK +APC++F+DE+D+V +
Sbjct: 352 ADVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCVIFIDELDSVGGKRIESPM--H 409
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
QT+NQLL EMDGF+ N G+IVI ATN A+ LD+AL+RPGRFD QVTV +PD++GRT
Sbjct: 410 PYSRQTINQLLAEMDGFKPNEGVIVIGATNFAEALDNALVRPGRFDMQVTVPIPDVKGRT 469
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EIL+ + K D+ + ++IA T GFSG GK ++ KE+ +
Sbjct: 470 EILEWYLKKIKVDSAIDAEIIARGTVGFSGAELENLVNQAALKAAADGKDLVTMKELKFA 529
Query: 494 IDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
D+I+ G E +V D ++K++ AYHE GHAI T P+ K T++PRG + G
Sbjct: 530 KDKILMGPERRSVEIDKRNKTITAYHESGHAIVAYYTKDAMPINKATIMPRGPSLGHVSL 589
Query: 553 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFG 612
+P +D ++ QL A++ +GGR AEE++FG ++T+GA+ D T +A+ MVT FG
Sbjct: 590 LPENDRWSETRAQLLAQMDVSMGGRVAEELVFGNDQITSGASSDFDGATKIAQMMVTRFG 649
Query: 613 MSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNR 671
MS+ +G + D + ++S + A ++ ++ L +YE A ++
Sbjct: 650 MSDKLGVMTYSD-----------LTKHSPETRAA--VEQEIRVLLQSSYERAKKILKTYS 696
Query: 672 EAIDKIVEVLLEKETMSGDEFRAIL 696
+ + + LL ET++ E + IL
Sbjct: 697 KEHKLLADALLTYETLNAKEIQMIL 721
>GENEDB_PFALCIPARUM|PF14_0616 [details] [associations]
symbol:PF14_0616 "i-AAA protease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 187/457 (40%), Positives = 274/457 (59%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI 310
N VTF DV G DE KQ+ E++++LK ++FT IGA++PKG+LL G PGTGKTL+A+AI
Sbjct: 248 NVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAI 307
Query: 311 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXX 370
AGEA VPF SGSEF EMFVGVGA R+R+LF+ AK++APCIVF+DEIDAV
Sbjct: 308 AGEANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRD- 366
Query: 371 XXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
N TLNQLL E+DGFE N GI+VI ATN LD AL+RPGR D+ + V +PDI+
Sbjct: 367 --NSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK 424
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
GR EILK++ + DV L V++ RT G +G GK ++ I
Sbjct: 425 GRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSVDMNSI 484
Query: 491 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLT 550
+ + DR+V G++ + + K++ AYHE GH + T G DPV K T++PRG + G+T
Sbjct: 485 EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT 544
Query: 551 WFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTT 610
W IP D + + + I +GG +EE+IFG+ VTTG + DLQ+ T +A+ +V
Sbjct: 545 WKIPISDKYSQKIKDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQKATHIAQSLVMN 604
Query: 611 FGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
+G+ G ++ M + + ++SE++ ID +++R+ +Y A + + +
Sbjct: 605 YGV----------GINEDNISMFLHDKQNISEEMKIKIDKSIQRILLDSYNRAKNVLNQH 654
Query: 671 REAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 707
+ + +I L+E ET++ DE + + + +NR
Sbjct: 655 IDELHRIASALVEYETLTSDEIKLAMQGKCDQIRKNR 691
>UNIPROTKB|Q8IKI9 [details] [associations]
symbol:PF14_0616 "ATP-dependent protease la, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
Uniprot:Q8IKI9
Length = 706
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 187/457 (40%), Positives = 274/457 (59%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI 310
N VTF DV G DE KQ+ E++++LK ++FT IGA++PKG+LL G PGTGKTL+A+AI
Sbjct: 248 NVKVTFADVKGCDEVKQELEEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAI 307
Query: 311 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXX 370
AGEA VPF SGSEF EMFVGVGA R+R+LF+ AK++APCIVF+DEIDAV
Sbjct: 308 AGEANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRD- 366
Query: 371 XXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
N TLNQLL E+DGFE N GI+VI ATN LD AL+RPGR D+ + V +PDI+
Sbjct: 367 --NSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIK 424
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
GR EILK++ + DV L V++ RT G +G GK ++ I
Sbjct: 425 GRYEILKMYSNKIVLSKDVDLHVLSRRTVGMTGADLNNILNIAAIKCSVEGKKSVDMNSI 484
Query: 491 DDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLT 550
+ + DR+V G++ + + K++ AYHE GH + T G DPV K T++PRG + G+T
Sbjct: 485 EQAFDRVVVGLQRKSPLNEEEKNITAYHEGGHTLVNFYTKGSDPVHKATIMPRGMSLGVT 544
Query: 551 WFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTT 610
W IP D + + + I +GG +EE+IFG+ VTTG + DLQ+ T +A+ +V
Sbjct: 545 WKIPISDKYSQKIKDVQSEIDILMGGLVSEEIIFGKNNVTTGCSSDLQKATHIAQSLVMN 604
Query: 611 FGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
+G+ G ++ M + + ++SE++ ID +++R+ +Y A + + +
Sbjct: 605 YGV----------GINEDNISMFLHDKQNISEEMKIKIDKSIQRILLDSYNRAKNVLNQH 654
Query: 671 REAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 707
+ + +I L+E ET++ DE + + + +NR
Sbjct: 655 IDELHRIASALVEYETLTSDEIKLAMQGKCDQIRKNR 691
>UNIPROTKB|A7E2Z6 [details] [associations]
symbol:SPG7 "SPG7 protein" species:9913 "Bos taurus"
[GO:0008089 "anterograde axon cargo transport" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0007005
MEROPS:M41.006 CTD:6687 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
EMBL:DAAA02046269 EMBL:BC151632 IPI:IPI00866907
RefSeq:NP_001095492.1 UniGene:Bt.11239 SMR:A7E2Z6 STRING:A7E2Z6
Ensembl:ENSBTAT00000032500 GeneID:515269 KEGG:bta:515269
InParanoid:A7E2Z6 NextBio:20871741 Uniprot:A7E2Z6
Length = 779
Score = 866 (309.9 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 195/451 (43%), Positives = 273/451 (60%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 305 GVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++G EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTAVSGF 424
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+AATNRADILD+ALLRPGR DR V +D+P ++
Sbjct: 425 SNTEEEQTLNQLLVEMDGMGTTDHVIVLAATNRADILDNALLRPGRLDRHVFIDLPTLQE 484
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
R EI + H + K S +A TPGFSG R G A+ +
Sbjct: 485 RKEIFEQHLKSLKLTRASSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTAVHTSN 544
Query: 490 IDDSIDRIVAGM--EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR 547
+D +++R+VAG + V++ + K +VA+HE GHA+ G L + V KV++ PR A
Sbjct: 545 LDYAVERVVAGTAKKSKVLSKEEQK-VVAFHESGHALVGWLLEHTEAVMKVSITPRTNAA 603
Query: 548 -GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQ 606
G +P D L +++QLF R+ LGGRA+E + F VT+GA DL+++T +A
Sbjct: 604 LGFAQMLPRDQH-LFTREQLFERMCMALGGRASESISFNR--VTSGAQDDLRKVTRIAYS 660
Query: 607 MVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALS 665
MV FGM+ IGP S + +Q G + + R S+ L + ID + L AY
Sbjct: 661 MVKQFGMAPSIGPVSFPE-AQEG---VTGIGRRPFSQGLQQMIDHEARLLVATAYRHTEQ 716
Query: 666 QIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+R+N + + + LLEKE ++ ++ A++
Sbjct: 717 VLRDNLDKLHALASALLEKEVINYEDIEALI 747
Score = 48 (22.0 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 105 LGSGKAYADEQGVSSSRMSYSRFLEYL 131
+G G ++ D G+ +++ F++YL
Sbjct: 302 MGKGVSFKDVAGMHEAKLEVKEFVDYL 328
>CGD|CAL0002950 [details] [associations]
symbol:YME1 species:5476 "Candida albicans" [GO:0031942
"i-AAA complex" evidence=IEA] [GO:0006515 "misfolded or
incompletely synthesized protein catabolic process" evidence=IEA]
[GO:0001300 "chronological cell aging" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 CGD:CAL0002950 GO:GO:0005524
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.004
EMBL:AACQ01000068 EMBL:AACQ01000067 KO:K08955 RefSeq:XP_716504.1
RefSeq:XP_716560.1 ProteinModelPortal:Q5A458 SMR:Q5A458
STRING:Q5A458 GeneID:3641816 GeneID:3641839 KEGG:cal:CaO19.1252
KEGG:cal:CaO19.8836 Uniprot:Q5A458
Length = 687
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 194/446 (43%), Positives = 272/446 (60%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
V F DV G DEA+ + E+V+FLK P +FT +G ++PKGVLL GPPGTGKTLLA+A AGE
Sbjct: 222 VRFKDVQGCDEARAELEEIVDFLKDPSKFTGLGGKLPKGVLLTGPPGTGKTLLARATAGE 281
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
AGVPFF +SGSEF E++VGVGA R+R+LF +A++ AP I+F+DE+DA+
Sbjct: 282 AGVPFFFMSGSEFDELYVGVGAKRIRELFSQARDKAPAIIFIDELDAIGGKRNPKDQAY- 340
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
+QTLNQLL E+DGF GII+I ATN + LD AL RPGRFD++V VD+PD+RGR
Sbjct: 341 --AKQTLNQLLVELDGFSQTEGIIIIGATNFPESLDKALTRPGRFDKEVIVDLPDVRGRI 398
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK H N + DV +IA TPG SG + A+ + +
Sbjct: 399 DILKHHMQNVETADDVDPSIIARGTPGLSGAELMNLVNQAAVHASQLSAPAVDMNHFEWA 458
Query: 494 IDRIVAGM--EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTW 551
D+I+ G + V+T+ +S+ AYHE GHAI + G P+ K T++PRG+A G+T+
Sbjct: 459 KDKILMGAAKKKMVITE-ESRINTAYHEAGHAIMAMFSKGATPLYKATILPRGRALGITF 517
Query: 552 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTF 611
+P D +SKQ+ FAR+ +GG+ AEE+I G+ VT+G A DL T +A+ MVT++
Sbjct: 518 QLPEMDKVDMSKQECFARLDVCMGGKIAEEMINGKENVTSGCASDLSNATSVARAMVTSY 577
Query: 612 GMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
GMS+ IGP L D +S +R MA N + + L + K L D+ E+
Sbjct: 578 GMSDKIGPVRLSDDWESWSPQIRNMADNEVRDYLLDSEKRTRKLLYDKRLELK------- 630
Query: 671 REAIDKIVEVLLEKETMSGDEFRAIL 696
++ E LLE ET++ +E ++
Sbjct: 631 -----RLAEGLLEYETLTKEEMEKVV 651
>GENEDB_PFALCIPARUM|PFL1925w [details] [associations]
symbol:PFL1925w "cell division protein FtsH,
putative" species:5833 "Plasmodium falciparum" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 191/451 (42%), Positives = 279/451 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ F+++AG+DE+K + +EVV+F+K E++ +GAR+PKGVLLVGPPG+GKT+LA+A+A E
Sbjct: 146 IRFEEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVATE 205
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VP+ SG EF+E++VG GA R+R LF A+ AP IVF+DEIDA+
Sbjct: 206 ANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGA 265
Query: 374 DERE--QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
+RE QTLNQLL EMDGF I+VI ATNR D LDSALLRPGRFDR V V +PDI G
Sbjct: 266 GQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDING 325
Query: 432 RTEILKVHGSNKKFDADVSL-DV--IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSK 488
R +IL+++ KK +D+ L D+ IA TPGFSG R K+ ++
Sbjct: 326 RKKILEIY--IKKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILATRNNKSLVTIN 383
Query: 489 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGT-LTPGHDPVQKVTLVPRGQA 546
E+ ++ D++ G E ++ + + AYHE GHAI L P DP+ K T++ RG A
Sbjct: 384 ELYEARDKVSMGPERKSLRQSDHQRRITAYHEAGHAIVAYFLQPKTDPIHKATIISRGNA 443
Query: 547 RGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQ 606
G IP DD K Q+ A++ +GGR AEE++FG+ E ++GA+ D+ + T +A +
Sbjct: 444 LGYVEQIPVDDRHNYFKSQMEAKLAVCMGGRTAEEIVFGKSETSSGASSDISRATEIAYK 503
Query: 607 MVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALS 665
MVT +GMS+ +GP + + GD + N +S + I+ VK L ++ ++
Sbjct: 504 MVTEWGMSDKLGPLNYK--KRMGDGY----SSNRLSAQTVSSIEVEVKSLVEKGKSLSEE 557
Query: 666 QIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+R +R+ +D + LL+KET+SG+E + I+
Sbjct: 558 ILRRHRKELDNLAFALLDKETLSGEEIKNII 588
>UNIPROTKB|Q8I526 [details] [associations]
symbol:PFL1925w "Cell division protein FtsH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0051301
GO:GO:0016020 GO:GO:0006508 GO:GO:0004222 EMBL:AE014188
GO:GO:0030163 TIGRFAMs:TIGR01241 GO:GO:0004176 HOGENOM:HOG000217276
HSSP:Q9LCZ4 KO:K01417 RefSeq:XP_001350791.1
ProteinModelPortal:Q8I526 SMR:Q8I526 IntAct:Q8I526
MINT:MINT-1702870 PRIDE:Q8I526 EnsemblProtists:PFL1925w:mRNA
GeneID:811437 KEGG:pfa:PFL1925w EuPathDB:PlasmoDB:PF3D7_1239700
ProtClustDB:CLSZ2433071 Uniprot:Q8I526
Length = 880
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 191/451 (42%), Positives = 279/451 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ F+++AG+DE+K + +EVV+F+K E++ +GAR+PKGVLLVGPPG+GKT+LA+A+A E
Sbjct: 146 IRFEEIAGIDESKLELLEVVDFIKNREKYHEMGARMPKGVLLVGPPGSGKTMLARAVATE 205
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VP+ SG EF+E++VG GA R+R LF A+ AP IVF+DEIDA+
Sbjct: 206 ANVPYIYTSGPEFIEIYVGQGAKRIRQLFAHARSVAPSIVFIDEIDAIGGKRSSGSVNGA 265
Query: 374 DERE--QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
+RE QTLNQLL EMDGF I+VI ATNR D LDSALLRPGRFDR V V +PDI G
Sbjct: 266 GQREHDQTLNQLLVEMDGFSNTVHIMVIGATNRIDTLDSALLRPGRFDRIVYVPLPDING 325
Query: 432 RTEILKVHGSNKKFDADVSL-DV--IAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSK 488
R +IL+++ KK +D+ L D+ IA TPGFSG R K+ ++
Sbjct: 326 RKKILEIY--IKKIKSDLKLEDIEKIARLTPGFSGADLENVVNEATILATRNNKSLVTIN 383
Query: 489 EIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGT-LTPGHDPVQKVTLVPRGQA 546
E+ ++ D++ G E ++ + + AYHE GHAI L P DP+ K T++ RG A
Sbjct: 384 ELYEARDKVSMGPERKSLRQSDHQRRITAYHEAGHAIVAYFLQPKTDPIHKATIISRGNA 443
Query: 547 RGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQ 606
G IP DD K Q+ A++ +GGR AEE++FG+ E ++GA+ D+ + T +A +
Sbjct: 444 LGYVEQIPVDDRHNYFKSQMEAKLAVCMGGRTAEEIVFGKSETSSGASSDISRATEIAYK 503
Query: 607 MVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALS 665
MVT +GMS+ +GP + + GD + N +S + I+ VK L ++ ++
Sbjct: 504 MVTEWGMSDKLGPLNYK--KRMGDGY----SSNRLSAQTVSSIEVEVKSLVEKGKSLSEE 557
Query: 666 QIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+R +R+ +D + LL+KET+SG+E + I+
Sbjct: 558 ILRRHRKELDNLAFALLDKETLSGEEIKNII 588
>MGI|MGI:2385906 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=TAS] [GO:0008089
"anterograde axon cargo transport" evidence=IMP] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030155 "regulation of cell adhesion"
evidence=TAS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 MGI:MGI:2385906 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0030155 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0007155 GO:GO:0004222
GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 MEROPS:M41.006
CTD:6687 KO:K09552 ChiTaRS:SPG7 EMBL:AF512565 EMBL:AF547215
EMBL:AK145540 EMBL:BC024466 EMBL:BC024986 EMBL:BC051051
EMBL:BC096690 IPI:IPI00170128 RefSeq:NP_694816.3 UniGene:Mm.292075
ProteinModelPortal:Q3ULF4 SMR:Q3ULF4 STRING:Q3ULF4
PhosphoSite:Q3ULF4 PaxDb:Q3ULF4 PRIDE:Q3ULF4
Ensembl:ENSMUST00000108868 GeneID:234847 KEGG:mmu:234847
UCSC:uc009nud.1 InParanoid:Q3ULF4 NextBio:382391 Bgee:Q3ULF4
CleanEx:MM_SPG7 Genevestigator:Q3ULF4 Uniprot:Q3ULF4
Length = 781
Score = 850 (304.3 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 188/450 (41%), Positives = 271/450 (60%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 305 GVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++G EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGF 424
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRAD+LD+AL+RPGR DR V +D+P ++
Sbjct: 425 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQE 484
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
R EI + H K S +A TPGFSG R G ++ +
Sbjct: 485 RREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFN 544
Query: 490 IDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR- 547
+ +++R++AG + + + + + +VA+HE GHA+ G L + V KV++ PR A
Sbjct: 545 FEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAAL 604
Query: 548 GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQM 607
G + +P D L +K+QLF R+ LGGRAAE + F VT+GA DL+++T +A M
Sbjct: 605 GFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSM 661
Query: 608 VTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQ 666
V FGM+ IGP S + +Q G + + R S+ L + +D K L +AY
Sbjct: 662 VKQFGMAPSIGPVSFPE-AQEG---LMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKV 717
Query: 667 IRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+ +N + + + LLEKE ++ ++ A++
Sbjct: 718 LLDNLDKLQALANALLEKEVINYEDIEALI 747
Score = 45 (20.9 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 106 GSGKAYADEQGVSSSRMSYSRFLEYL 131
G G ++ D G+ +++ F++YL
Sbjct: 303 GKGVSFQDVAGMHEAKLEVREFVDYL 328
>ZFIN|ZDB-GENE-030131-5391 [details] [associations]
symbol:spg7 "spastic paraplegia 7" species:7955
"Danio rerio" [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382
ZFIN:ZDB-GENE-030131-5391 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:6687 KO:K09552 OMA:MMDHEAK EMBL:AL954648 EMBL:BX470191
IPI:IPI00483001 RefSeq:XP_001923118.1 UniGene:Dr.105782
Ensembl:ENSDART00000098438 GeneID:794740 KEGG:dre:794740
NextBio:20931970 Uniprot:E7F2S4
Length = 788
Score = 844 (302.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 192/463 (41%), Positives = 279/463 (60%)
Query: 244 AKFQM---EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
AKF + + GV+F DVAG+ EAK + E V++LK P+R+ +GA++PKG LL+GPPG
Sbjct: 284 AKFTIVDGKSGKGVSFKDVAGMREAKMEVKEFVDYLKNPDRYLQLGAKVPKGSLLLGPPG 343
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
GKTLLAKA+A EA VPF +++GSEFVE+ G+GA+RVR LFK+A+ APCIV++DEIDA
Sbjct: 344 CGKTLLAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDA 403
Query: 361 VXXXXXXXXXX-XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
V N E EQTLNQLL EMDG +IV+A+TNRADILD+AL+RPGR D
Sbjct: 404 VGKKRSTNMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDNALMRPGRLD 463
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFD--ADVSLDVIAMRTPGFSGXXXXXXXXXXXXXX 477
R + +D+P ++ R EI + H K AD +A TPGFSG
Sbjct: 464 RHIFIDLPTLQERKEIFEQHLKILKLTQPADFYSLRLAELTPGFSGADIANICNEAALHA 523
Query: 478 GRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQ 536
R G +I + + +++R++AG ++ + + + + +VA+HE GHA+ G L + V
Sbjct: 524 AREGFKSIDTFSFEYAVERVIAGSVKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVM 583
Query: 537 KVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAG 595
KV++ PR A G +P D L +K+QLF R+ LGGRA+E + F + VTTGA
Sbjct: 584 KVSIAPRTNAALGFAQILPRDQ-FLFTKEQLFERMCMALGGRASEAITFNK--VTTGAQD 640
Query: 596 DLQQITGLAKQMVTTFGMSE-IGPWSLMDG-SQSGDVIMRMMARNSMSEKLAEDIDAAVK 653
DL+++T +A MV +GM + +G S D +QSG + R S+ L + +D K
Sbjct: 641 DLRKVTRVAYSMVKQYGMVDSVGQVSFPDSENQSG------IGRRPFSQGLQQQMDLEAK 694
Query: 654 RLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
L +AY + +NR+ + + LLE+E ++ ++ A+L
Sbjct: 695 MLIAKAYRHTEKLLLDNRDKLILLANALLEREVVNYNDIEALL 737
Score = 51 (23.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 106 GSGKAYADEQGVSSSRMSYSRFLEYL-DKDR 135
G G ++ D G+ ++M F++YL + DR
Sbjct: 294 GKGVSFKDVAGMREAKMEVKEFVDYLKNPDR 324
>UNIPROTKB|E2R4F3 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 CTD:6687 KO:K09552 OMA:MMDHEAK
EMBL:AAEX03003953 EMBL:AAEX03003954 RefSeq:XP_546777.3
Ensembl:ENSCAFT00000031561 GeneID:489657 KEGG:cfa:489657
NextBio:20862809 Uniprot:E2R4F3
Length = 793
Score = 845 (302.5 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 189/451 (41%), Positives = 272/451 (60%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 305 GVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++G EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 424
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRADILD+ALLRPGR DR V +D+P ++
Sbjct: 425 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDNALLRPGRLDRHVFIDLPTLQE 484
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
R EI + H + K S +A TPGFSG R G ++ +
Sbjct: 485 RREIFEHHLKSLKLTQASSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFN 544
Query: 490 IDDSIDRIVAGM--EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR 547
+ +++R++AG + +++ + K +VA+HE GHA+ G L + V KV++ PR A
Sbjct: 545 FEYAVERVIAGTAKKSKILSKEEQK-VVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAA 603
Query: 548 -GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQ 606
G +P D L +K+QLF R+ LGGR +E + F + VT+GA DL+++T +A
Sbjct: 604 LGFAQMLPRDQH-LFTKEQLFERMCMALGGRVSETISFNK--VTSGAQDDLRKVTRIAYS 660
Query: 607 MVTTFGMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALS 665
MV FGM+ IGP S + Q G + + R S+ L + +D K L +AY
Sbjct: 661 MVKQFGMAPSIGPISFPE-VQEG---LTGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEK 716
Query: 666 QIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+++N + + + LLEKE ++ ++ A++
Sbjct: 717 VLQDNLDKLQALANALLEKEVINYEDIEALI 747
Score = 48 (22.0 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 105 LGSGKAYADEQGVSSSRMSYSRFLEYL 131
+G G ++ D G+ +++ F++YL
Sbjct: 302 MGKGVSFKDVAGMHEAKLEVKEFVDYL 328
>UNIPROTKB|Q9UQ90 [details] [associations]
symbol:SPG7 "Paraplegin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0008089 "anterograde axon cargo transport"
evidence=IEA] [GO:0031966 "mitochondrial membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004222
"metalloendopeptidase activity" evidence=IDA] [GO:0005739
"mitochondrion" evidence=TAS] [GO:0051082 "unfolded protein
binding" evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] [GO:0008233 "peptidase activity" evidence=TAS]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 GO:GO:0016021 GO:GO:0005739
GO:GO:0005524 GO:GO:0007399 GO:GO:0031966 GO:GO:0046872
GO:GO:0008219 GO:GO:0051082 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 GO:GO:0008089 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 EMBL:Y16610 EMBL:AF080525
EMBL:AF080511 EMBL:AF080512 EMBL:AF080513 EMBL:AF080514
EMBL:AF080515 EMBL:AF080516 EMBL:AF080517 EMBL:AF080518
EMBL:AF080519 EMBL:AF080520 EMBL:AF080521 EMBL:AF080522
EMBL:AF080523 EMBL:AF080524 EMBL:BC007692 EMBL:BC035929
EMBL:BC036104 EMBL:BC110530 EMBL:BC110531 IPI:IPI00299010
IPI:IPI00398508 RefSeq:NP_003110.1 RefSeq:NP_955399.1
UniGene:Hs.185597 PDB:2QZ4 PDBsum:2QZ4 ProteinModelPortal:Q9UQ90
SMR:Q9UQ90 IntAct:Q9UQ90 STRING:Q9UQ90 MEROPS:M41.006
PhosphoSite:Q9UQ90 DMDM:116242796 PaxDb:Q9UQ90 PRIDE:Q9UQ90
DNASU:6687 Ensembl:ENST00000268704 Ensembl:ENST00000341316
GeneID:6687 KEGG:hsa:6687 UCSC:uc002fni.3 UCSC:uc002fnj.3 CTD:6687
GeneCards:GC16P089574 HGNC:HGNC:11237 MIM:602783 MIM:607259
neXtProt:NX_Q9UQ90 Orphanet:99013 PharmGKB:PA36067
InParanoid:Q9UQ90 KO:K09552 OMA:MMDHEAK OrthoDB:EOG4PG60F
PhylomeDB:Q9UQ90 ChiTaRS:SPG7 EvolutionaryTrace:Q9UQ90
GenomeRNAi:6687 NextBio:26057 ArrayExpress:Q9UQ90 Bgee:Q9UQ90
CleanEx:HS_SPG7 Genevestigator:Q9UQ90 GermOnline:ENSG00000197912
Uniprot:Q9UQ90
Length = 795
Score = 844 (302.2 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 187/451 (41%), Positives = 273/451 (60%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 305 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++G EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 424
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRADILD AL+RPGR DR V +D+P ++
Sbjct: 425 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 484
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
R EI + H + K + +A TPGFSG R G ++ +
Sbjct: 485 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 544
Query: 490 IDDSIDRIVAGM--EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR 547
+ +++R++AG + +++ + K +VA+HE GHA+ G + + V KV++ PR A
Sbjct: 545 FEYAVERVLAGTAKKSKILSKEEQK-VVAFHESGHALVGWMLEHTEAVMKVSITPRTNAA 603
Query: 548 -GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQ 606
G +P D L +K+QLF R+ LGGRA+E + F E VT+GA DL+++T +A
Sbjct: 604 LGFAQMLPRDQH-LFTKEQLFERMCMALGGRASEALSFNE--VTSGAQDDLRKVTRIAYS 660
Query: 607 MVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALS 665
MV FGM+ IGP S + +Q G + + R S+ L + +D + L +AY
Sbjct: 661 MVKQFGMAPGIGPISFPE-AQEG---LMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEK 716
Query: 666 QIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+++N + + + LLEKE ++ ++ A++
Sbjct: 717 VLQDNLDKLQALANALLEKEVINYEDIEALI 747
Score = 47 (21.6 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 105 LGSGKAYADEQGVSSSRMSYSRFLEYL 131
+G G ++ D G+ +++ F++YL
Sbjct: 302 MGKGVSFKDVAGMHEAKLEVREFVDYL 328
>SGD|S000006228 [details] [associations]
symbol:YME1 "Catalytic subunit of the mitochondrial inner
membrane i-AAA protease" species:4932 "Saccharomyces cerevisiae"
[GO:0006457 "protein folding" evidence=IMP] [GO:0005743
"mitochondrial inner membrane" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=IGI;IMP]
[GO:0006515 "misfolded or incompletely synthesized protein
catabolic process" evidence=IMP] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0031942 "i-AAA complex"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
SGD:S000006228 GO:GO:0005524 GO:GO:0006457 GO:GO:0046872
GO:GO:0004222 EMBL:Z71255 EMBL:BK006949 GO:GO:0006515
eggNOG:COG0465 TIGRFAMs:TIGR01241 EMBL:Z49274 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942
GeneTree:ENSGT00550000074836 KO:K08955 OrthoDB:EOG4FR40W
EMBL:L14616 EMBL:X81067 EMBL:D16332 PIR:S54498 RefSeq:NP_015349.1
ProteinModelPortal:P32795 SMR:P32795 IntAct:P32795 STRING:P32795
PaxDb:P32795 PeptideAtlas:P32795 EnsemblFungi:YPR024W GeneID:856135
KEGG:sce:YPR024W CYGD:YPR024w OMA:SEFDEVY NextBio:981236
Genevestigator:P32795 GermOnline:YPR024W Uniprot:P32795
Length = 747
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 191/457 (41%), Positives = 276/457 (60%)
Query: 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA 311
T V FDDV G DEA+ + E+V+FLK P ++ ++G ++PKGVLL GPPGTGKTLLA+A A
Sbjct: 276 TNVKFDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATA 335
Query: 312 GEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX 371
GEAGV FF +SGSEF E++VGVGA R+RDLF +A+ AP I+F+DE+DA+
Sbjct: 336 GEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQA 395
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
+QTLNQLL E+DGF +GII+I ATN + LD AL RPGRFD+ V VD+PD+RG
Sbjct: 396 Y---AKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRG 452
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R +ILK H +V +IA TPG SG ++ ++ +
Sbjct: 453 RADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFE 512
Query: 492 DSIDRIVAGMEGT--VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGL 549
+ D+I+ G E V+TD K+ A+HE GHAI T G P+ K T++PRG+A G+
Sbjct: 513 WAKDKILMGAERKTMVLTDAARKA-TAFHEAGHAIMAKYTNGATPLYKATILPRGRALGI 571
Query: 550 TWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVT 609
T+ +P D I+K++ AR+ +GG+ AEE+I+G+ T+G DLQ TG A+ MVT
Sbjct: 572 TFQLPEMDKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVT 631
Query: 610 TFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEI-ALSQI 667
+GMS+ +GP +L + +S +R +A N + E L + + A + L+ + E+ L+Q
Sbjct: 632 QYGMSDDVGPVNLSENWESWSNKIRDIADNEVIELLKDSEERARRLLTKKNVELHRLAQG 691
Query: 668 RNNREAIDKI-VEVLLEKETMSGDEFRAILSEFVEIP 703
E +D +E + + E + D+ + + VE P
Sbjct: 692 LIEYETLDAHEIEQVCKGEKL--DKLKTSTNTVVEGP 726
>UNIPROTKB|I3LLQ8 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
Uniprot:I3LLQ8
Length = 597
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 194/464 (41%), Positives = 275/464 (59%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPP 299
++ AK ++ V F DVAG +EAK + ME V FLK P+++ +GA+IPK G +L GPP
Sbjct: 84 ETTAKV-LKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKKGAILTGPP 142
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKA AGEA VPF ++SGSEF+EMFVGVG +RVRDLF A++NAPCI+F+DEID
Sbjct: 143 GTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEID 202
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
AV E+E TLNQLL EMDGF T ++++A TNR DILD ALLRPGRFD
Sbjct: 203 AVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFD 262
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXX 475
RQ+ + PDI+GR I KVH K D+ + + +A + TPGFSG
Sbjct: 263 RQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAAL 322
Query: 476 XXGRRGKAAISSKEIDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDP 534
R +I+ K + +I+R++ G+E T + + K VAYHE GHA+ G DP
Sbjct: 323 IAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADP 382
Query: 535 VQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAA-EEVIFGEPEVTTGA 593
+ KV+++PRG+ G ++P + L +K+QL R+ G + FG +TTGA
Sbjct: 383 LLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTPGWPCGPRKSSFGR--ITTGA 439
Query: 594 AGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAV 652
D +++T A + FGM+E +G S D + GD+++ SE A ID V
Sbjct: 440 QDD-RKVTQSAYAQIVQFGMNEKVGQISF-DLPRQGDMVLE----KPYSEATARLIDDEV 493
Query: 653 KRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+ L + AY+ ++ + + ++K+ +LLEKE + + +L
Sbjct: 494 RILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNNMVELL 537
>UNIPROTKB|F1NXP0 [details] [associations]
symbol:SPG7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=IEA] [GO:0008089 "anterograde axon cargo
transport" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0008089
GO:GO:0030163 GeneTree:ENSGT00530000063070 GO:GO:0017111
TIGRFAMs:TIGR01241 GO:GO:0007005 OMA:MMDHEAK EMBL:AADN02054132
IPI:IPI00601320 Ensembl:ENSGALT00000010016 Uniprot:F1NXP0
Length = 768
Score = 834 (298.6 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 183/450 (40%), Positives = 266/450 (59%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
G+ F DVAG+ EAK + E V++LK P+R+ +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 278 GIGFKDVAGMHEAKMEVKEFVDYLKNPDRYLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 337
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++GSEFVE+ G+GA+RVR LF++A+ APCIV++DEIDAV
Sbjct: 338 EAQVPFLAMAGSEFVEVIGGLGAARVRSLFREAQARAPCIVYIDEIDAVGKKRSTNVSGF 397
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRAD+LD+AL+RPGR DR + +D+P ++
Sbjct: 398 ANAEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHIFIDLPTLQE 457
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
R EI + H K D S +A TPGFSG R G +I +
Sbjct: 458 RREIFEQHLKGLKLIQDASFYSQHLAELTPGFSGADIANICNEAALHAAREGHKSIDTFN 517
Query: 490 IDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR- 547
+ +++R++AG + + + + +VA+HE GHA+ G L + V KV++ PR A
Sbjct: 518 FEYAVERVIAGTAKRNKILSPEERKVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAAL 577
Query: 548 GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQM 607
G +P + L +K+QL R+ LGGR +E + F + VTTGA DL+++T +A M
Sbjct: 578 GFAQILPREQ-YLFTKEQLLERMCMALGGRVSEAITFNK--VTTGAQDDLKRVTKIAYSM 634
Query: 608 VTTFGM-SEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQ 666
V +GM IG S DG + + R S+ L + +D K L +AY
Sbjct: 635 VKQYGMVPSIGQISFPDGESTVGI-----GRRPFSQGLQQMMDHEAKVLVAQAYRRTEKL 689
Query: 667 IRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+ +NR+ + + LLEKE ++ D+ A++
Sbjct: 690 LLDNRDKLQTLSNALLEKEVINYDDIEALI 719
Score = 49 (22.3 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 106 GSGKAYADEQGVSSSRMSYSRFLEYL-DKDR 135
G G + D G+ ++M F++YL + DR
Sbjct: 276 GKGIGFKDVAGMHEAKMEVKEFVDYLKNPDR 306
>DICTYBASE|DDB_G0293388 [details] [associations]
symbol:DDB_G0293388 "ATP-dependent metalloprotease"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0293388 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:AAFI02000204
RefSeq:XP_629167.2 ProteinModelPortal:Q54BW7 STRING:Q54BW7
MEROPS:M41.A16 EnsemblProtists:DDB0304811 GeneID:8629188
KEGG:ddi:DDB_G0293388 InParanoid:Q54BW7 OMA:ICLAGRA Uniprot:Q54BW7
Length = 767
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 176/375 (46%), Positives = 238/375 (63%)
Query: 244 AKFQMEPN-TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTG 302
AK E N T +FDDV G+ E K++ E+V++L P ++ +IGA++PKGVLL G PGTG
Sbjct: 286 AKEYDETNQTPTSFDDVKGIQEVKEELEEIVDYLLHPTKYNSIGAKLPKGVLLSGEPGTG 345
Query: 303 KTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVX 362
KTLLA+AIAGEAGV F +GS F E +VGVG+ RVR+LF A+E PCI+F+DEIDAV
Sbjct: 346 KTLLARAIAGEAGVSFLYTTGSSFDEKYVGVGSRRVRELFNAAREKQPCIIFIDEIDAVG 405
Query: 363 XXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 422
+TL QLLTEMDGFEGN+ I++I ATN + LD ALLRPGRFDR +
Sbjct: 406 KSRNTA------HHNETLLQLLTEMDGFEGNSQIMIIGATNAPNSLDPALLRPGRFDRHI 459
Query: 423 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGK 482
+V +PD++GR+EI+ + K +V D IA TPGF+G + GK
Sbjct: 460 SVPIPDMKGRSEIIDHYLKKVKHTVEVKADTIARATPGFTGADLSNLINTAAIKAVQNGK 519
Query: 483 AAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTL 540
IS K+IDD+ D I+ G VM++ +++ AYHE GHA+ +T DP+ K T+
Sbjct: 520 ETISIKQIDDARDDILMGRARLNAVMSE-EARRNTAYHEAGHALVAAMTEAADPIHKATI 578
Query: 541 VPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQI 600
V RGQA G+ +P D +++Q+ AR+ L GRAAEE+ FG VT+GA+ D QQ
Sbjct: 579 VQRGQALGMVSQLPEMDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVTSGASSDFQQA 638
Query: 601 TGLAKQMVTTFGMSE 615
+ LA M+T +GMS+
Sbjct: 639 SSLAFSMITKWGMSD 653
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 135/331 (40%), Positives = 194/331 (58%)
Query: 378 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 437
+TL QLLTEMDGFEGN+ I++I ATN + LD ALLRPGRFDR ++V +PD++GR+EI+
Sbjct: 415 ETLLQLLTEMDGFEGNSQIMIIGATNAPNSLDPALLRPGRFDRHISVPIPDMKGRSEIID 474
Query: 438 VHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 497
+ K +V D IA TPGF+G + GK IS K+IDD+ D I
Sbjct: 475 HYLKKVKHTVEVKADTIARATPGFTGADLSNLINTAAIKAVQNGKETISIKQIDDARDDI 534
Query: 498 VAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPS 555
+ G VM++ +++ AYHE GHA+ +T DP+ K T+V RGQA G+ +P
Sbjct: 535 LMGRARLNAVMSE-EARRNTAYHEAGHALVAAMTEAADPIHKATIVQRGQALGMVSQLPE 593
Query: 556 DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE 615
D +++Q+ AR+ L GRAAEE+ FG VT+GA+ D QQ + LA M+T +GMS+
Sbjct: 594 MDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVTSGASSDFQQASSLAFSMITKWGMSD 653
Query: 616 IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAID 675
+ S +V +K+ ED VK L D+ Y+ + I NR+ ++
Sbjct: 654 KVGFIYHKDKTSPEV-----------QKIIED---EVKDLLDKQYQYSKELIIKNRDNME 699
Query: 676 KIVEVLLEKETMSGDEFRAILSEFVEIPAEN 706
K+V LLEKET++G+E IL+ V +P +N
Sbjct: 700 KLVGQLLEKETLTGEEILKILNPKVTLPIQN 730
>DICTYBASE|DDB_G0267492 [details] [associations]
symbol:DDB_G0267492 "peptidase M41, FtsH
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0267492 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
EMBL:AAFI02000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GO:GO:0017111 TIGRFAMs:TIGR01241 RefSeq:XP_647076.1
ProteinModelPortal:Q55GV8 SMR:Q55GV8 MEROPS:M41.A18
EnsemblProtists:DDB0189322 GeneID:8615880 KEGG:ddi:DDB_G0267492
OMA:RINENNQ Uniprot:Q55GV8
Length = 720
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 182/450 (40%), Positives = 278/450 (61%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKA 309
PNT TF DV G +EAK + ++V+FL+ PE++ +PKG+LLVGPPGTGKTLLAK+
Sbjct: 159 PNT--TFADVMGAEEAKGELQDLVDFLRNPEKYYRRNIVMPKGILLVGPPGTGKTLLAKS 216
Query: 310 IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXX 369
+AGEA V F +I+GSEF E FVGVGA RVR+LF+ A++N+PCIVF+DEID+V
Sbjct: 217 LAGEARVSFITINGSEFEEAFVGVGAKRVRELFEAARKNSPCIVFIDEIDSVGGSRTKRV 276
Query: 370 XXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429
N + LNQLL E+DGF+G G++V+AATN D LD+AL+R GRFDR + V +PD
Sbjct: 277 ---NYHPSEALNQLLVELDGFDGREGVMVMAATNYQDSLDTALIRSGRFDRIIQVPLPDG 333
Query: 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
+ R I+ + +K + V+ IA TPGFSG + I+ ++
Sbjct: 334 KARKSIIDHYLKDKPIASHVNTTTIAQSTPGFSGADLFNLVNWAALETTKHNLPEITMEQ 393
Query: 490 IDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR 547
++++ + ++ G E +M+D +++ + A+HE GHA+ +TPG V K T++PRG A
Sbjct: 394 LENAKENLMMGKERHSLLMSD-EARKICAFHEAGHALVAIMTPGARTVHKATIMPRGDAL 452
Query: 548 GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQM 607
GL + ++ T ++K+QL A++ +GGRAAEE+I G+ ++ GA+ D+Q+ T +AK M
Sbjct: 453 GLVSMLEKEE-TFVTKKQLIAQMDVAMGGRAAEELILGKENISQGASSDIQKATSIAKAM 511
Query: 608 VTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQI 667
V+ +GMSE + G + ++ + S +++ E +D+ VK L D +Y A +
Sbjct: 512 VSNYGMSE----------KVGQIYIQSEKKLSSAQR--ELVDSEVKSLLDSSYIRATQLL 559
Query: 668 RNNREAIDKIVEVLLEKETMSGDEFRAILS 697
+ + I LLE ET+S DE + I++
Sbjct: 560 KKYSKEHHLIANALLEYETLSLDEIKDIIA 589
>POMBASE|SPCC965.04c [details] [associations]
symbol:SPCC965.04c "mitochondrial inner membrane i-AAA
protease complex subunit Yme1 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0004176 "ATP-dependent peptidase
activity" evidence=ISO] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISO] [GO:0007005
"mitochondrion organization" evidence=ISS] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0031942 "i-AAA complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC965.04c GO:GO:0016021 GO:GO:0005524 EMBL:CU329672
GO:GO:0046872 GO:GO:0004222 GO:GO:0006515 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0007005 GO:GO:0004176
HOGENOM:HOG000217276 MEROPS:M41.004 GO:GO:0031942 PIR:T41657
RefSeq:NP_588514.1 ProteinModelPortal:O59824 SMR:O59824
STRING:O59824 EnsemblFungi:SPCC965.04c.1 GeneID:2538746
KEGG:spo:SPCC965.04c KO:K08955 OMA:LANANMS OrthoDB:EOG4FR40W
NextBio:20799930 Uniprot:O59824
Length = 709
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 176/449 (39%), Positives = 271/449 (60%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
V F DV GVDEAK++ E+V+FL+ P FT +G ++P+GVLL GPPGTGKT+LA+A+AGE
Sbjct: 264 VRFSDVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE 323
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPFF +SGS+F EM+VGVGA RVR+LF A++ AP I+F+DE+DA+
Sbjct: 324 ANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAA-- 381
Query: 374 DEREQTLNQLLTEMDGFEGNTG----IIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429
QTLNQLL ++DGF N ++ I ATN + LD AL RPGRFDR + V +PD+
Sbjct: 382 -HMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDV 440
Query: 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
RGR IL H + DV L +IA T GF+G + A+S ++
Sbjct: 441 RGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRD 500
Query: 490 IDDSIDRIVAGMEG-TVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARG 548
++ S DRI+ G E + ++K + AYHE GHA+ T K T++PRG + G
Sbjct: 501 LEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLG 560
Query: 549 LTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMV 608
+T +P D ++++ A + +GGRAAEE+++G+ ++T+GA D+ + T +A++MV
Sbjct: 561 MTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMV 620
Query: 609 TTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQI 667
T FGMS+ IGP SL + M +++S +++ +K L + +YE +LS +
Sbjct: 621 TEFGMSDRIGPVSL-------EAEM-----DNLSPATRALVESEIKSLLEASYERSLSLL 668
Query: 668 RNNREAIDKIVEVLLEKETMSGDEFRAIL 696
+++++ +D + L++ E ++ +E ++
Sbjct: 669 KSHKKELDALATALVDYEFLTAEEMNRVV 697
>RGD|727940 [details] [associations]
symbol:Spg7 "spastic paraplegia 7 homolog (human)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA;ISO] [GO:0008089
"anterograde axon cargo transport" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0031966
"mitochondrial membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 SMART:SM00382 RGD:727940
GO:GO:0016021 GO:GO:0005524 GO:GO:0031966 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49 MEROPS:M41.006
CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108 RefSeq:NP_852053.1
UniGene:Rn.16437 ProteinModelPortal:Q7TT47 SMR:Q7TT47 STRING:Q7TT47
PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754 GeneID:353231
KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619 ArrayExpress:Q7TT47
Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 576 (207.8 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 117/214 (54%), Positives = 149/214 (69%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 305 GVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++G EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGF 424
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRAD+LD+AL+RPGR DR V +D+P ++
Sbjct: 425 SNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQE 484
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSG 463
R EI + H K S +A TPGFSG
Sbjct: 485 RREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSG 518
Score = 259 (96.2 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 70/206 (33%), Positives = 110/206 (53%)
Query: 497 IVAGMEGTV----MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTW 551
+ G GT + + + +VA+HE GHA+ G L + V KV++ PR A G +
Sbjct: 512 LTPGFSGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQ 571
Query: 552 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTF 611
+P D L +K+QLF R+ LGGRAAE + F VT+GA DL+++T +A MV F
Sbjct: 572 MLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQF 628
Query: 612 GMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
GM+ IGP S + +Q G V + R S+ L + +D + L RAY + +N
Sbjct: 629 GMAPSIGPVSFPE-AQEGLV---GIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDN 684
Query: 671 REAIDKIVEVLLEKETMSGDEFRAIL 696
+ + + LLEKE ++ ++ A++
Sbjct: 685 LDKLQALANALLEKEVINYEDIEALI 710
Score = 45 (20.9 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 106 GSGKAYADEQGVSSSRMSYSRFLEYL 131
G G ++ D G+ +++ F++YL
Sbjct: 303 GKGVSFQDVAGMHEAKLEVREFVDYL 328
>UNIPROTKB|Q7TT47 [details] [associations]
symbol:Spg7 "Paraplegin" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 SMART:SM00382 RGD:727940 GO:GO:0016021 GO:GO:0005524
GO:GO:0031966 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 eggNOG:COG0465 GeneTree:ENSGT00530000063070
HOGENOM:HOG000217277 HOVERGEN:HBG050184 GO:GO:0017111 HSSP:Q9WZ49
MEROPS:M41.006 CTD:6687 KO:K09552 EMBL:AY278739 IPI:IPI00327108
RefSeq:NP_852053.1 UniGene:Rn.16437 ProteinModelPortal:Q7TT47
SMR:Q7TT47 STRING:Q7TT47 PRIDE:Q7TT47 Ensembl:ENSRNOT00000047754
GeneID:353231 KEGG:rno:353231 UCSC:RGD:727940 NextBio:672619
ArrayExpress:Q7TT47 Genevestigator:Q7TT47 Uniprot:Q7TT47
Length = 744
Score = 576 (207.8 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 117/214 (54%), Positives = 149/214 (69%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 305 GVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 364
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX- 371
EA VPF +++G EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 365 EAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGF 424
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRAD+LD+AL+RPGR DR V +D+P ++
Sbjct: 425 SNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQE 484
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSG 463
R EI + H K S +A TPGFSG
Sbjct: 485 RREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSG 518
Score = 259 (96.2 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 70/206 (33%), Positives = 110/206 (53%)
Query: 497 IVAGMEGTV----MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTW 551
+ G GT + + + +VA+HE GHA+ G L + V KV++ PR A G +
Sbjct: 512 LTPGFSGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQ 571
Query: 552 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTF 611
+P D L +K+QLF R+ LGGRAAE + F VT+GA DL+++T +A MV F
Sbjct: 572 MLPRDQ-YLFTKEQLFERMCMALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQF 628
Query: 612 GMS-EIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNN 670
GM+ IGP S + +Q G V + R S+ L + +D + L RAY + +N
Sbjct: 629 GMAPSIGPVSFPE-AQEGLV---GIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDN 684
Query: 671 REAIDKIVEVLLEKETMSGDEFRAIL 696
+ + + LLEKE ++ ++ A++
Sbjct: 685 LDKLQALANALLEKEVINYEDIEALI 710
Score = 45 (20.9 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 106 GSGKAYADEQGVSSSRMSYSRFLEYL 131
G G ++ D G+ +++ F++YL
Sbjct: 303 GKGVSFQDVAGMHEAKLEVREFVDYL 328
>WB|WBGene00021425 [details] [associations]
symbol:ppgn-1 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
KO:K09552 EMBL:FO080872 EMBL:AB257343 RefSeq:NP_500191.3
UniGene:Cel.12073 ProteinModelPortal:G5EDB6 SMR:G5EDB6
MEROPS:M41.A12 EnsemblMetazoa:Y38F2AR.7.1
EnsemblMetazoa:Y38F2AR.7.2 GeneID:177021 KEGG:cel:CELE_Y38F2AR.7
CTD:177021 WormBase:Y38F2AR.7 OMA:DKISWSE NextBio:895012
Uniprot:G5EDB6
Length = 747
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 180/455 (39%), Positives = 265/455 (58%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ F DVAG EAK + E V++LK P RFT +GA++P+G LL GPPG GKTLLAKA+A E
Sbjct: 282 IKFKDVAGCSEAKVEIREFVDYLKNPGRFTKLGAKLPRGALLTGPPGCGKTLLAKALAAE 341
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX- 372
+ VPF S++GSEFVE+ G+GASR+R LFK+A+ APCI+++DEIDA+
Sbjct: 342 STVPFISMNGSEFVEVIGGLGASRIRGLFKEARSRAPCIIYIDEIDAIGRKRSEGAGAGG 401
Query: 373 -----NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
+ E EQTLNQLL EMDG G++V+A+TNRAD+LD ALLRPGRFDR +++D+P
Sbjct: 402 GFGGGSGEEEQTLNQLLVEMDGMGSGNGVVVLASTNRADVLDKALLRPGRFDRHISIDLP 461
Query: 428 DIRGRTEILKVHGSNKKFD---ADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAA 484
+ R ++ +++ K D + S + A+ TPGF+G
Sbjct: 462 TVLERKDMFELYMRKIKLDHAPQEYSQRLAAL-TPGFTGADIMNVCNESAIRAASNKCHV 520
Query: 485 ISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR 543
++ K+++ ++DR++AG E + + + +VAYHE GHA+ G + D + KVT++PR
Sbjct: 521 VTHKDMEYALDRVLAGSEKRSRSLVEEEREVVAYHEAGHALVGWMLEHTDALLKVTIIPR 580
Query: 544 GQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITG 602
A G + P D L SK +LF R+ LGGR AE + FG T+GA DLQ++T
Sbjct: 581 TSAALGFAQYSPRDKH-LFSKDELFDRMCMMLGGRCAENLKFGR--ATSGAQDDLQKVTK 637
Query: 603 LAKQMVTTFGMSEI-GPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYE 661
A V +GMS I GP S + G I S+K A D + +A E
Sbjct: 638 SAYAQVKLYGMSSIVGPLSFPN--TEGFQI------KPYSKKFASTFDQEATLIVAKANE 689
Query: 662 IALSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 696
I+NN + ++ I + LL++E ++ ++ + ++
Sbjct: 690 ATTDLIKNNMDKLETIAQALLKREVLNYEDVKKLI 724
>TAIR|locus:2138146 [details] [associations]
symbol:FtsHi1 "FTSH inactive protease 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0008237 "metallopeptidase
activity" evidence=ISS] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0010020 "chloroplast fission" evidence=IMP]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0051301 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
eggNOG:COG0465 GO:GO:0017111 GO:GO:0010020 EMBL:AC002343
EMBL:AL078468 EMBL:AL161560 HSSP:Q9LCZ4 IPI:IPI00537043 PIR:T08913
RefSeq:NP_567691.1 UniGene:At.3392 ProteinModelPortal:O22993
SMR:O22993 PaxDb:O22993 PRIDE:O22993 EnsemblPlants:AT4G23940.1
GeneID:828494 KEGG:ath:AT4G23940 TAIR:At4g23940
HOGENOM:HOG000029491 InParanoid:O22993 OMA:QMAGSEF PhylomeDB:O22993
ProtClustDB:CLSN2689578 ArrayExpress:O22993 Genevestigator:O22993
Uniprot:O22993
Length = 946
Score = 733 (263.1 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 167/390 (42%), Positives = 237/390 (60%)
Query: 241 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPG 300
QSKA+ +++ +TGV F DVAG+DEA + E+V++LK P+ F +G + P GVLL GPPG
Sbjct: 414 QSKAEARVDGSTGVKFADVAGIDEAVDELQELVKYLKNPDLFDKMGIKPPHGVLLEGPPG 473
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
GKTL+AKAIAGEAGVPF+ ++GSEFVE+ VGVG++R+RDLFK+AK N P ++F+DEIDA
Sbjct: 474 CGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 533
Query: 361 VXXXXXXXXXXXND--------EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 412
+ +D ERE TLNQLL E+DGF+ G+I + ATNR D+LD AL
Sbjct: 534 LATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPAL 593
Query: 413 LRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXX 472
LRPGRFDR++ V P+ +GR +ILK+H S K V L A PG+SG
Sbjct: 594 LRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSGAKLAQLVQE 653
Query: 473 XXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDG-KSKSLVAYHEVGHAICGTLTPG 531
R+ +I ++DD++DR+ G + G + + A EVG AI L
Sbjct: 654 AALVAVRKTHNSILQSDMDDAVDRLTVGPTRIGLELGHQGQCRRATTEVGVAITSHLLLR 713
Query: 532 HDPVQ-----KVTLVPRGQARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEVIF 584
++ + +V+++PRGQ F DD + + + QL R+ LGGRAAEEVI+
Sbjct: 714 YENAKIERCDRVSIIPRGQTLSQVVFHRLDDESYMFGRLPQLLHRLQVLLGGRAAEEVIY 773
Query: 585 GEPEVTTGAAGD-LQQITGLAKQMVTTFGM 613
G T+ A+ D L + LA++++T + +
Sbjct: 774 GSD--TSKASVDYLSDASWLARKILTIWNL 801
Score = 129 (50.5 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 51/184 (27%), Positives = 90/184 (48%)
Query: 537 KVTLVPRGQARGLTWFIPSDDPTLISKQ--QLFARIVGGLGGRAAEEVIFGEPEVTTGAA 594
+V+++PRGQ F DD + + + QL R+ LGGRAAEEVI+G T+ A+
Sbjct: 724 RVSIIPRGQTLSQVVFHRLDDESYMFGRLPQLLHRLQVLLGGRAAEEVIYGSD--TSKAS 781
Query: 595 GD-LQQITGLAKQMVTTFGMS-------EIGPWSL----------MDGSQSGDV-IMRMM 635
D L + LA++++T + + E PW +GS D ++
Sbjct: 782 VDYLSDASWLARKILTIWNLENPMVIHGEPPPWRKRPQFVGPRLDFEGSLYDDYDLVEPP 841
Query: 636 ARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 695
+M +++A + + ++ Y +S +R N+ A+ K V+VLL ++ +SG+ I
Sbjct: 842 VNFNMDDEVAHRSEELISQM----YNKTVSLLRQNQTALLKTVKVLLNQKEISGEAIDFI 897
Query: 696 LSEF 699
L +
Sbjct: 898 LDHY 901
Score = 53 (23.7 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 94 LVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKV-DLFENGTI 147
L G G G L+ KA A E GV +M+ S F+E L ++ DLF+ +
Sbjct: 468 LEGPPGCGKTLVA--KAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKV 520
Score = 45 (20.9 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 26/104 (25%), Positives = 42/104 (40%)
Query: 35 VGNILTTHKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLSQKQHEGRRGFLKKL 94
VG+ L K + +LSK + F R + K K K+ S + R + KL
Sbjct: 93 VGDKLYNLKEREDLSKGTNAATGAFEFIKRKFDSKKKTETDKSEESVYLSDILREYKGKL 152
Query: 95 VGNVGVGTALLGSGKAYADEQGVSS-SRMSYSRFLEYLDKDRVK 137
V L + + E+ V +MS F + ++ D+VK
Sbjct: 153 YVPEQVFGPELSEEEEF--EKNVKDLPKMSLEDFRKAMENDKVK 194
>TAIR|locus:2094892 [details] [associations]
symbol:EMB2083 "embryo defective 2083" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004176 "ATP-dependent peptidase activity"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000023 "maltose metabolic process"
evidence=RCA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
SMART:SM00382 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AB023046
eggNOG:COG0465 GO:GO:0017111 IPI:IPI00526963 RefSeq:NP_566541.1
UniGene:At.38918 ProteinModelPortal:A8MPR5 SMR:A8MPR5 STRING:A8MPR5
PaxDb:A8MPR5 PRIDE:A8MPR5 EnsemblPlants:AT3G16290.1 GeneID:820876
KEGG:ath:AT3G16290 TAIR:At3g16290 HOGENOM:HOG000015086
InParanoid:A8MPR5 OMA:FFTHGEM PhylomeDB:A8MPR5
ProtClustDB:CLSN2688442 Genevestigator:A8MPR5 Uniprot:A8MPR5
Length = 876
Score = 660 (237.4 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
Identities = 168/455 (36%), Positives = 242/455 (53%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLA 307
+E V F DVAG+ + + + E+V+F E + G +IP G+LL GPPG GKTLLA
Sbjct: 401 LERGVDVKFTDVAGLGKIRLELEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLA 460
Query: 308 KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXX 367
KA+AGEAGV FFSIS S+FVE++VGVGASRVR L+++A+ENAP +VF+DE+DAV
Sbjct: 461 KAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRERGL 520
Query: 368 XXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
ER+ TLNQLL +DGFEG +I IA+TNR DILD AL+RPGRFDR++ + P
Sbjct: 521 IKGSGGQERDATLNQLLVSLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKP 580
Query: 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISS 487
+ GR EIL+VH K D+ +A T G G R G+ +++
Sbjct: 581 GLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGAELANIVEIAAINMMRDGRTELTT 640
Query: 488 KEIDDSIDRIVAGMEGTVMTDGKSKSL-----VAYHEVGHAICGTLTPGHDPVQKVTLVP 542
DD + A +E M D K +SL VA +E A+ P ++ +T+ P
Sbjct: 641 ---DDLLQ--AAQIEERGMLDRKDRSLETWRQVAINEAAMAVVAVNFPDMKNIEFLTINP 695
Query: 543 RGQARGLTWF-IPSDD----PTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDL 597
R R L + + D ++S+Q + I L RAA+E+ +GE +++T A
Sbjct: 696 RA-GRELGYVRVKMDHIKFKEGMLSRQSILDHITVQLAPRAADELWYGEDQLSTIWAETS 754
Query: 598 QQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSD 657
A+ +V G+S+ G N DID R+ +
Sbjct: 755 DNARSAARSLVLG-GLSD---------KHHG-------LNNFWVADRINDIDVEALRILN 797
Query: 658 RAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEF 692
YE A + NR +D++VE L++K++++ EF
Sbjct: 798 MCYERAKEILGRNRTLMDEVVEKLVQKKSLTKQEF 832
Score = 47 (21.6 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
Identities = 27/126 (21%), Positives = 55/126 (43%)
Query: 72 VAVVKASLSQKQHEGRRGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYL 131
+ ++ ASL++ + +K L KA++ + V S+R+ Y+ L
Sbjct: 66 LTIISASLAKPSFAAAKVTERKRTQKKPQEALTLEQLKAWSKDLPVVSNRIPYTDILSLK 125
Query: 132 DKDRVKKVDLFENGTIAIVEAISPEL----GNRVQRVRVQLPGL--SQELLQKFREKNID 185
+ ++K V + +++ + P L +RV +R LP L ++ +++ E ID
Sbjct: 126 AEGKLKHV--IKPPNLSLRQKAEPVLVVLEDSRV--LRTVLPSLEGNKRFWEQWDELGID 181
Query: 186 FAAHNA 191
NA
Sbjct: 182 VQCVNA 187
>TIGR_CMR|CJE_1085 [details] [associations]
symbol:CJE_1085 "cell division protein FtsH, putative"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
OMA:HRSDERE ProtClustDB:CLSK2395802
BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
Length = 538
Score = 644 (231.8 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 141/336 (41%), Positives = 211/336 (62%)
Query: 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA 311
+ +TF+DVAGVDE K + E+V+FL+ P+++ G ++PKGVL+VGPPG GKTL+AKA+A
Sbjct: 147 SNITFNDVAGVDEVKMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVA 206
Query: 312 GEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXX 371
GEAGVPFF SGS FVE++VG+GA RVR+LF KAK AP IVF+DEIDAV
Sbjct: 207 GEAGVPFFYQSGSSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMS-- 264
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N ER+ TLNQLLT+MDGFE N+G+IVIAATN+ +++D ALLR GRFDR++ + +PD +
Sbjct: 265 -NVERDSTLNQLLTQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKD 323
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R +IL+++ +K + +++L+ IA + GFSG RR A + +
Sbjct: 324 RLKILEIYMKDK--NNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFY 381
Query: 492 DSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGT-LTPGHDPVQKVTLVPRGQARGLT 550
+++++ G + + + + K + A ++ A+ L G + K+TL+ + R
Sbjct: 382 AVLNKVLLGKKKILSFNNEEKKIQATYQAAKALSAYYLDIGFE---KITLI---EDRFKE 435
Query: 551 WFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGE 586
+ + + SK +L RI L G A ++I+ E
Sbjct: 436 Y-----EHNIRSKSELINRIKVYLAGSRAMKLIYNE 466
Score = 49 (22.3 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 655 LSDRAYEIALSQIRNN-REAIDKIVEVLLEKETMSGDEFRAIL 696
LS++ E + + N+ ++ I K+ E+LLEKE + D+ + I+
Sbjct: 496 LSEQKKE--MDEFLNSMKDKILKLSELLLEKEKIEYDDVKDIM 536
>TAIR|locus:2076929 [details] [associations]
symbol:AT3G02450 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0009941 "chloroplast envelope" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR011546 Pfam:PF00004 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:AC021640
EMBL:CP002686 GO:GO:0051301 GO:GO:0008270 GO:GO:0009941
GO:GO:0004222 GO:GO:0017111 HSSP:Q9LCZ4 EMBL:AY062811 EMBL:BT008384
IPI:IPI00524458 RefSeq:NP_186894.1 UniGene:At.27477
ProteinModelPortal:Q9M895 SMR:Q9M895 STRING:Q9M895 PRIDE:Q9M895
EnsemblPlants:AT3G02450.1 GeneID:821139 KEGG:ath:AT3G02450
InParanoid:Q9M895 OMA:SRRIYYN ProtClustDB:CLSN2685201
Genevestigator:Q9M895 Uniprot:Q9M895
Length = 622
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 138/262 (52%), Positives = 178/262 (67%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGT 301
S AK + N V FDDV GVD AK + +E+V L+ + +GAR+P+GVLLVGPPGT
Sbjct: 319 SPAKKRRSKNPTVGFDDVEGVDSAKDELVEIVSCLQGSINYKKLGARLPRGVLLVGPPGT 378
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTLLA+A+AGEAGVPFFS+S SEFVE+FVG GA+R+RDLF A++N+P I+F+DE+DAV
Sbjct: 379 GKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAV 438
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
NDER+QTLNQLLTEMDGFE +T +IVIAATNR + LDSAL RPGRF R+
Sbjct: 439 GGKRGRSF---NDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRK 495
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGR 479
V V PD GR +IL +H + + D L D++A TPGF G R
Sbjct: 496 VLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAAR 555
Query: 480 RGKAAISSKEIDDSIDRIVAGM 501
RG A++ ++I ++I+R G+
Sbjct: 556 RGGEAVAREDIMEAIERAKFGI 577
>TAIR|locus:2174819 [details] [associations]
symbol:EMB3144 "EMBRYO DEFECTIVE 3144" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
"proteolysis" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009790
"embryo development" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0016556
"mRNA modification" evidence=RCA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 EMBL:CP002688
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 GO:GO:0009790
GO:GO:0017111 IPI:IPI00527762 RefSeq:NP_201263.2 UniGene:At.28951
ProteinModelPortal:F4KF14 SMR:F4KF14 PRIDE:F4KF14
EnsemblPlants:AT5G64580.1 GeneID:836579 KEGG:ath:AT5G64580
OMA:LCWISAK Uniprot:F4KF14
Length = 855
Score = 617 (222.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 170/477 (35%), Positives = 244/477 (51%)
Query: 241 QSKAKF-QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPP 299
+S+AKF E TGVTFDD AG + K++ E+V LK E F G PKGVLL GPP
Sbjct: 299 KSRAKFISAEEKTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPP 358
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLAKAIAGEAG+PFF+ +G++FVEMFVGV ASRV+DLF ++ AP I+F+DEID
Sbjct: 359 GTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEID 418
Query: 360 AVXXXXXXXXXXXND-EREQTLNQLLTEMDGFEGNTG-IIVIAATNRADILDSALLRPGR 417
A+ EREQ L Q+LTEMDGF+ T ++VI ATNR DILD ALLR GR
Sbjct: 419 AIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGR 478
Query: 418 FDRQVTVDVPDIRGRTEILKVHGSNKKF----DADVSLDVIAMRTPGFSGXXXXXXXXXX 473
FD+ + V +P GR ILKVH NK F + + L +A T F+G
Sbjct: 479 FDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTEDFTGAELQNVLNEA 538
Query: 474 XXXXGRRGKAAISSKEIDDSIDR----IVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLT 529
R+ I +E+ +++ R G E + + K +AY E A+
Sbjct: 539 GILTARKDLDYIGREELLEALKRQKGTFETGQEDSTEVPEELKLRLAYREAAVAVLACYL 598
Query: 530 PG-HDPVQKVTLVP-RGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEP 587
P + P+ + + R Q + + K I+ R EE +FG
Sbjct: 599 PDQYRPISETDINSIRSQPN--MRYSETSGRVFARKSDYVNSIIRACAPRVVEEEMFGIE 656
Query: 588 EVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAED 647
+ +A + + A+ ++ GM+ G + D++ ++ + E L ++
Sbjct: 657 NLCWISAKSTLEASQRAEFLILQTGMTAFGKAYYRN---QRDLVPNLVPK---LEALRDE 710
Query: 648 -IDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 703
+ AV++ S S ++ + A+++I +VLLEK + DE I + IP
Sbjct: 711 YMRFAVEKCS--------SILQEYQSALEEITDVLLEKGEIKADEIWNIYNTAPRIP 759
Score = 42 (19.8 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 22/109 (20%), Positives = 46/109 (42%)
Query: 39 LTTHKTKTNLSKDFHGRHLLFNSSFR----SLEKKPKVAVVKASLSQKQHEGRRGFLKKL 94
+++ T T+ SK + + LF S FR S ++ K K S RR L
Sbjct: 5 ISSSLTPTHFSKPLNPSNTLFPSQFRGSLSSFVRRRKPTEAKLSSKFNLFPSRRNGLITC 64
Query: 95 VGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFE 143
++ + + + E+ S+R+ + + E +++R+ ++ E
Sbjct: 65 CST----SSFESTESSVSQEEDAESNRL-FEKLRE-TERERLSNMEELE 107
>TIGR_CMR|CPS_1798 [details] [associations]
symbol:CPS_1798 "ATP-dependent peptidase, M41 family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
InterPro:IPR000642 InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR013093
Pfam:PF00004 Pfam:PF01434 Pfam:PF07724 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0006508
GO:GO:0004222 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
eggNOG:COG0542 RefSeq:YP_268529.1 ProteinModelPortal:Q484I6
STRING:Q484I6 GeneID:3520574 KEGG:cps:CPS_1798 PATRIC:21466749
HOGENOM:HOG000133952 ProtClustDB:CLSK741075
BioCyc:CPSY167879:GI48-1868-MONOMER Uniprot:Q484I6
Length = 1284
Score = 586 (211.3 bits), Expect = 8.7e-56, P = 8.7e-56
Identities = 144/446 (32%), Positives = 228/446 (51%)
Query: 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ DDV G++ AK+ +EVV +LK PE+ G +IP G L GPPGTGKTLLAKA+AGE
Sbjct: 849 SLDDVIGLERAKRRLIEVVSWLKAPEKLLNFGIKIPTGFLFSGPPGTGKTLLAKAVAGEC 908
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
+PFFS++ SE G ++ LF A++ AP I+F+DEIDA+ +
Sbjct: 909 ELPFFSVAASELSTPHSGGTTENIKQLFATARKYAPSIIFIDEIDAIAAQRTDNSDGSSR 968
Query: 375 EREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
++ T+N LLTEMDGF + V+AATN +LDSA+ RPGRFD + D+P+ R
Sbjct: 969 DKNLTVNALLTEMDGFSIAEVPVFVMAATNHPQLLDSAITRPGRFDETIYCDLPNKNARL 1028
Query: 434 EILKVHGSNKKFD-ADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
K S K + + L + G S + ++++ I
Sbjct: 1029 IFFKRFASKHKLNWQETELQQLVSSAQGMSSAEIDQVLRESIYQAVGENQQ-LTTEHIKQ 1087
Query: 493 SIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTW 551
++ RIV G + + K AYHE H + L P+ +T+ PR QA G
Sbjct: 1088 TMIRIVYGAPSDHIFLGAEEKRRTAYHEAAHLLAYKLLFPKQPIDFITIEPRNQALGFVA 1147
Query: 552 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGE-PEVTTGAAGDLQQITGLAKQMVTT 610
S++ SK+++ ++ L GR AE++ G+ EV+TGA+ D+++ T LA +
Sbjct: 1148 TRASEEYESYSKRRVMHKLQVLLAGRVAEKLCTGDCEEVSTGASNDIEKATQLAMHAIYE 1207
Query: 611 FGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRN 669
G+ +GP V + M+ + S+ LA + AVK+ D++ + +++
Sbjct: 1208 GGIEPTVGP-----------VNIAMLTKFEESDLLA-NAQQAVKQWLDQSEQQVEQLLKD 1255
Query: 670 NREAIDKIVEVLLEKETMSGDEFRAI 695
+ + + + E LL+KE++ G+E I
Sbjct: 1256 HYQQLTLVAETLLDKESLLGEEINLI 1281
>TIGR_CMR|CPS_1795 [details] [associations]
symbol:CPS_1795 "ATP-dependent peptidase, M41 family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
InterPro:IPR000642 InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR013093
Pfam:PF00004 Pfam:PF01434 Pfam:PF07724 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 GO:GO:0006508
GO:GO:0004222 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
eggNOG:COG0542 HOGENOM:HOG000133952 ProtClustDB:CLSK741075
RefSeq:YP_268526.1 ProteinModelPortal:Q484I9 STRING:Q484I9
GeneID:3521104 KEGG:cps:CPS_1795 PATRIC:21466745
BioCyc:CPSY167879:GI48-1865-MONOMER Uniprot:Q484I9
Length = 1301
Score = 549 (198.3 bits), Expect = 8.2e-52, P = 8.2e-52
Identities = 140/444 (31%), Positives = 219/444 (49%)
Query: 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV 316
DDV G+ AK ++V+E++K P++ +IP G L GPPGTGKT LAKA+AGE G+
Sbjct: 868 DDVIGLQRAKNRLLDVIEWMKFPDKLQNFDVKIPTGFLFAGPPGTGKTFLAKAVAGECGL 927
Query: 317 PFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDER 376
PFFS+S SE +G + ++ LF A++ AP IVF+DEIDA+ + ER
Sbjct: 928 PFFSVSASELSSTIIGGSSEKIMALFSVARKYAPSIVFIDEIDAIASQRSEDSQGNSRER 987
Query: 377 EQTLNQLLTEMDGFEGNTG-IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 435
+N LLTEMDGF + + V+AATN +LD A+LRPGRFD + D+P+ RT
Sbjct: 988 NAIVNTLLTEMDGFSSSESPVFVMAATNYPQLLDKAILRPGRFDETIFCDLPNSEARTIF 1047
Query: 436 LKVHGSNKKFDADVS-LDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
+ + S L + + G S K ++ + I +I
Sbjct: 1048 FEKFAQKQNLQWQQSDLTALVSSSQGMSSAEIDQVLREAIYQAVGTEKP-LTIEHIKQTI 1106
Query: 495 DRIVAGMEGTVMTDGKS-KSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFI 553
R+V G + GK K A+HE H + L + + T+ PR Q+ G
Sbjct: 1107 VRVVYGSPSENIKLGKEEKRRTAFHEAAHLLTYKLLFPNQIIDFATIEPRNQSLGFVATR 1166
Query: 554 PSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEP-EVTTGAAGDLQQITGLAKQMVTTFG 612
S++ SK ++ ++ L GR AE++ E++TGA+ D+++ T LA + G
Sbjct: 1167 ASEEYESYSKTRVMNKLQVLLAGRVAEKLCTNNADEISTGASNDIEKATQLAMHAIYDGG 1226
Query: 613 MSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNR 671
+ E +GP V + ++ + SE LA+ AV++ A + + +N
Sbjct: 1227 IEESVGP-----------VNVGILTKFEESELLAK-AQKAVQQWLITAEQSVEKLLNDNC 1274
Query: 672 EAIDKIVEVLLEKETMSGDEFRAI 695
++ + LLEKE++ DE +
Sbjct: 1275 HQLELVANTLLEKESLLSDEINTL 1298
>UNIPROTKB|Q58576 [details] [associations]
symbol:pan "Proteasome-activating nucleotidase"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
"GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
"proteasome-activating nucleotidase complex" evidence=IDA]
[GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
TIGRFAMs:TIGR01242 Uniprot:Q58576
Length = 430
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 109/223 (48%), Positives = 143/223 (64%)
Query: 243 KAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
+AK +++ V ++D+ G+++ Q+ EVVE LK PE F +G PKG+LL GPPG
Sbjct: 155 RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG 214
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA+A E F + GSE V+ F+G GAS V+D+FK AKE AP I+F+DEIDA
Sbjct: 215 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 274
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ + E ++TL QLL EMDGF+ + +I ATNR DILD A+LRPGRFDR
Sbjct: 275 IAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 334
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ V PD +GR EILK+H DV+L+ IA T G G
Sbjct: 335 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 377
>WB|WBGene00018991 [details] [associations]
symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
Length = 432
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 100/245 (40%), Positives = 146/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ V G+D ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 173 TYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 232
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 233 TECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGD 292
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ PD + R
Sbjct: 293 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPAPDEKARA 352
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H + +D IA + PG SG R + ++ ++ + +
Sbjct: 353 QILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFEMA 412
Query: 494 IDRIV 498
+ +++
Sbjct: 413 VGKVM 417
>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory
subunit 7, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
Uniprot:Q8IEK3
Length = 420
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 97/254 (38%), Positives = 146/254 (57%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E +T++D+ G E + EVVE L +PERF +G PKGVLL GPPGTGKTL
Sbjct: 153 VEEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLT 212
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+AIA F + GSE V+ +VG GA VR+LF+ AK CI+F+DE+DA+
Sbjct: 213 ARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRG 272
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
+ E ++T+ +++ ++DGF+ I V+ ATNR D LDSAL+RPGR DR++ +
Sbjct: 273 DESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRRIEFSL 332
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GRT I K+H + DV +++A P +G R + I+
Sbjct: 333 PDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTIT 392
Query: 487 SKEIDDSIDRIVAG 500
K++ +I++++ G
Sbjct: 393 EKDLLLAINKVIHG 406
>UNIPROTKB|Q8IEK3 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory subunit 7,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
Length = 420
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 97/254 (38%), Positives = 146/254 (57%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E +T++D+ G E + EVVE L +PERF +G PKGVLL GPPGTGKTL
Sbjct: 153 VEEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLT 212
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+AIA F + GSE V+ +VG GA VR+LF+ AK CI+F+DE+DA+
Sbjct: 213 ARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRG 272
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
+ E ++T+ +++ ++DGF+ I V+ ATNR D LDSAL+RPGR DR++ +
Sbjct: 273 DESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVRPGRIDRRIEFSL 332
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GRT I K+H + DV +++A P +G R + I+
Sbjct: 333 PDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTIT 392
Query: 487 SKEIDDSIDRIVAG 500
K++ +I++++ G
Sbjct: 393 EKDLLLAINKVIHG 406
>POMBASE|SPBC16C6.07c [details] [associations]
symbol:rpt1 "19S proteasome regulatory subunit Rpt1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
IntAct:O42931 STRING:O42931 PRIDE:O42931
EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
Length = 438
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 99/260 (38%), Positives = 145/260 (55%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S Q+E VT+ DV G E + EVVE L PERF +G PKG++L GPPG
Sbjct: 164 SVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPG 223
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTL A+A+A F + GSE V+ +VG GA VR+LF+ A+ CI+F DEIDA
Sbjct: 224 TGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDA 283
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ ++E ++T+ +L+T++DGF+ I V+ ATNR + LD AL+RPGR DR
Sbjct: 284 IGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDR 343
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
+V +PD+ GR IL++H + D D+ ++IA P +G R
Sbjct: 344 KVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRA 403
Query: 481 GKAAISSKEIDDSIDRIVAG 500
+ + K+ D++ ++V G
Sbjct: 404 RRRVATEKDFLDAVQKVVKG 423
>WB|WBGene00004506 [details] [associations]
symbol:rpt-6 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
Uniprot:Q9XTT9
Length = 416
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 98/245 (40%), Positives = 146/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 157 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTGKTLLARAVAHH 216
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 217 TECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGD 276
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILD ALLRPGR DR++ PD + R
Sbjct: 277 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKARA 336
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H +++ IA + PG SG R + ++ ++ + +
Sbjct: 337 DILKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFEMA 396
Query: 494 IDRIV 498
+ +++
Sbjct: 397 VGKVM 401
>UNIPROTKB|F1NU79 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
Ensembl:ENSGALT00000000469 Uniprot:F1NU79
Length = 412
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 153 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 212
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 213 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 272
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 273 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 332
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 333 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 392
Query: 494 IDRIV 498
+ +++
Sbjct: 393 VAKVM 397
>UNIPROTKB|P62194 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>UNIPROTKB|P62195 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
"nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043069 "negative regulation of programmed cell
death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
[GO:0003712 "transcription cofactor activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
Ensembl:ENST00000375812 Ensembl:ENST00000580864
Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>UNIPROTKB|P62197 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
Uniprot:P62197
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>UNIPROTKB|Q4RG45 [details] [associations]
symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>UNIPROTKB|Q6AZU7 [details] [associations]
symbol:Q6AZU7 "Putative uncharacterized protein"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
Length = 414
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 155 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 214
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 215 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 274
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 275 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 334
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 335 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 394
Query: 494 IDRIV 498
+ +++
Sbjct: 395 VAKVM 399
>UNIPROTKB|Q6P380 [details] [associations]
symbol:psmc5 "Putative uncharacterized protein MGC75584"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
Uniprot:Q6P380
Length = 414
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 155 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 214
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 215 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 274
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 275 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 334
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 335 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 394
Query: 494 IDRIV 498
+ +++
Sbjct: 395 VAKVM 399
>MGI|MGI:105047 [details] [associations]
symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO;ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>RGD|708376 [details] [associations]
symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008134 "transcription factor binding" evidence=ISO;ISS]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
ArrayExpress:P62198 Genevestigator:P62198
GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
symbol:psmc5 "proteasome (prosome, macropain) 26S
subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
Uniprot:Q6AZC1
Length = 406
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 327 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 386
Query: 494 IDRIV 498
+ +++
Sbjct: 387 VAKVM 391
>UNIPROTKB|Q5R8D7 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
Uniprot:Q5R8D7
Length = 433
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 95/253 (37%), Positives = 144/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT ILK+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>TAIR|locus:2024822 [details] [associations]
symbol:RPT1A "regulatory particle triple-A 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
Length = 426
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 94/256 (36%), Positives = 145/256 (56%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E VT++DV G E + EVVE + PE+F +G PKGVL GPPGTGKTLL
Sbjct: 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+A+A F + GSE V+ +VG GA VR+LF+ A+ CIVF DE+DA+
Sbjct: 219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
++E ++T+ +++ ++DGF+ I V+ ATNR D LD ALLRPGR DR+V +
Sbjct: 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ RT+I K+H + D+ +++A P +G R + ++
Sbjct: 339 PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVT 398
Query: 487 SKEIDDSIDRIVAGME 502
K+ D++++++ G +
Sbjct: 399 EKDFLDAVNKVIKGYQ 414
>WB|WBGene00004501 [details] [associations]
symbol:rpt-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
Length = 435
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 98/255 (38%), Positives = 143/255 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G + + EVVE L PER+ +G PKGVLL GPPGTGKTL
Sbjct: 167 QVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTL 226
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDAV
Sbjct: 227 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGAR 286
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR+V
Sbjct: 287 FDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFA 346
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GR ILK+H + D+ D++A P +G R +
Sbjct: 347 LPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 406
Query: 486 SSKEIDDSIDRIVAG 500
+ K+ ++I+++V G
Sbjct: 407 TEKDFLEAINKVVKG 421
>UNIPROTKB|Q18787 [details] [associations]
symbol:rpt-1 "26S protease regulatory subunit 7"
species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
NextBio:906264 Uniprot:Q18787
Length = 435
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 98/255 (38%), Positives = 143/255 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G + + EVVE L PER+ +G PKGVLL GPPGTGKTL
Sbjct: 167 QVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTL 226
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDAV
Sbjct: 227 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGAR 286
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR+V
Sbjct: 287 FDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFA 346
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GR ILK+H + D+ D++A P +G R +
Sbjct: 347 LPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 406
Query: 486 SSKEIDDSIDRIVAG 500
+ K+ ++I+++V G
Sbjct: 407 TEKDFLEAINKVVKG 421
>DICTYBASE|DDB_G0276917 [details] [associations]
symbol:psmC2 "26S proteasome ATPase 2 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
Length = 428
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 96/258 (37%), Positives = 141/258 (54%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S Q+E +T+ DV G E + EVVE L PE+F +G PKGVL+ GPPG
Sbjct: 155 SVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPG 214
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTL A+A+A F + GSE V+ +VG GA VRDLF+ A+ CI+F DE+DA
Sbjct: 215 TGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDA 274
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ ++E ++T+ +L+ ++DGF+ I V+ ATNR D LD ALLRPGR DR
Sbjct: 275 IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDR 334
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
+V +PD+ GR I +H D+ +++A P +G R
Sbjct: 335 KVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 394
Query: 481 GKAAISSKEIDDSIDRIV 498
+ +S K+ ++ID+++
Sbjct: 395 RRKVVSEKDFLEAIDKVI 412
>UNIPROTKB|P46472 [details] [associations]
symbol:psmc2 "26S protease regulatory subunit 7"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
Uniprot:P46472
Length = 433
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>CGD|CAL0006022 [details] [associations]
symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051091 "positive regulation
of sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
Length = 401
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/246 (38%), Positives = 148/246 (60%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+D V G+D+ ++ EV+E +K PE F ++G PKGV+L GPPGTGKTLLA+A+A
Sbjct: 142 TYDMVGGLDKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 201
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID++ +
Sbjct: 202 TECKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGD 261
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE + I +I ATNR DILD ALLRPGR DR++ P + RT
Sbjct: 262 SEVQRTMLELLNQLDGFESSKDIKIIMATNRLDILDPALLRPGRIDRKIEFPAPTVAART 321
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H + ++L IA + G SG R + ++ ++ + +
Sbjct: 322 DILKIHSRSMNLTRGINLRKIAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 381
Query: 494 IDRIVA 499
+ ++++
Sbjct: 382 VAKVMS 387
>UNIPROTKB|E1C4V5 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
Length = 424
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 156 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 215
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 216 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 275
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 276 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 335
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 336 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 395
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 396 TEKDFLEAVNKVI 408
>UNIPROTKB|F1NFL8 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
Uniprot:F1NFL8
Length = 432
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 164 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 223
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 224 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 283
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 284 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 343
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 344 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 403
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 404 TEKDFLEAVNKVI 416
>UNIPROTKB|Q5E9F9 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
Uniprot:Q5E9F9
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>UNIPROTKB|F1PPH7 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
Uniprot:F1PPH7
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>UNIPROTKB|B7Z5E2 [details] [associations]
symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
Uniprot:B7Z5E2
Length = 296
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 28 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 87
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 88 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 147
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 148 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 207
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 208 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 267
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 268 TEKDFLEAVNKVI 280
>UNIPROTKB|P35998 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>UNIPROTKB|F1SB53 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
Length = 475
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 207 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 266
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 267 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 326
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 327 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 386
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 387 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 446
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 447 TEKDFLEAVNKVI 459
>UNIPROTKB|I3LJ30 [details] [associations]
symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
Length = 434
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 166 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 225
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 226 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 285
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 286 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 345
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 346 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 405
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 406 TEKDFLEAVNKVI 418
>UNIPROTKB|Q4R4R0 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
Uniprot:Q4R4R0
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>MGI|MGI:109555 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
Uniprot:P46471
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>RGD|3428 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
GermOnline:ENSRNOG00000012026 Uniprot:Q63347
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>UNIPROTKB|Q63347 [details] [associations]
symbol:Psmc2 "26S protease regulatory subunit 7"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
Uniprot:Q63347
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
symbol:psmc2 "proteasome (prosome, macropain) 26S
subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
Length = 433
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 94/253 (37%), Positives = 143/253 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PERF +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR++
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFS 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD+ GRT I K+H + + D+ +++A P +G R +
Sbjct: 345 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++++++
Sbjct: 405 TEKDFLEAVNKVI 417
>ASPGD|ASPL0000034636 [details] [associations]
symbol:AN2917 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0045899 "positive regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001306
EMBL:AACD01000051 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
OrthoDB:EOG4B01XN RefSeq:XP_660521.1 ProteinModelPortal:Q5B963
STRING:Q5B963 EnsemblFungi:CADANIAT00010170 GeneID:2874156
KEGG:ani:AN2917.2 Uniprot:Q5B963
Length = 443
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 95/254 (37%), Positives = 141/254 (55%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E VT+ DV G E + EVVE L PERF +G PKG LL GPPGTGKTL
Sbjct: 176 VEDKPDVTYGDVGGCKEQIEKLREVVEMPLLSPERFVNLGIDPPKGALLYGPPGTGKTLC 235
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+A+A F + GSE V+ +VG GA VR+LF+ A+ CI+F DEIDAV
Sbjct: 236 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARF 295
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
++E ++T+ +L+T++DGF+ I V+ ATNR LD AL+RPGR DR++ +
Sbjct: 296 DDGAGGDNEVQRTMLELITQLDGFDARGNIKVMFATNRPSTLDPALMRPGRIDRKIEFSL 355
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GR IL++H + + D+ ++I+ P +G R + +
Sbjct: 356 PDVEGRANILRIHAKSMSVERDIRWELISRLCPNATGAELRSVATEAGMFAIRARRKVAT 415
Query: 487 SKEIDDSIDRIVAG 500
K+ ++D+++ G
Sbjct: 416 EKDFLAAVDKVIKG 429
>FB|FBgn0020369 [details] [associations]
symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
"endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
"proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
"proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
Uniprot:O18413
Length = 405
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 97/245 (39%), Positives = 144/245 (58%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 146 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 205
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G G+ VR+LF A+E+AP I+F+DEID++ +
Sbjct: 206 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 265
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILD ALLRPGR DR++ P+ R
Sbjct: 266 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 325
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 326 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 385
Query: 494 IDRIV 498
+ +++
Sbjct: 386 VAKVM 390
>FB|FBgn0039788 [details] [associations]
symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
NextBio:834976 Uniprot:Q9VA54
Length = 399
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 97/245 (39%), Positives = 144/245 (58%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ V G+D+ Q+ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 141 TYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHH 200
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G G+ VR+LF A+E+AP I+F+DEID++ +
Sbjct: 201 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGTG-D 259
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR D+LD ALLRPGR DR++ P+ R
Sbjct: 260 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARL 319
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 320 DILKIHSRKMNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 379
Query: 494 IDRIV 498
+ +++
Sbjct: 380 VSKVM 384
>UNIPROTKB|P46470 [details] [associations]
symbol:psmc5 "26S protease regulatory subunit 8"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
KEGG:xla:397968 Uniprot:P46470
Length = 461
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 98/245 (40%), Positives = 145/245 (59%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ + G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 142 TYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 201
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ F+G GA VR+LF A+E+AP I+F+DEID++ +
Sbjct: 202 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGG-D 260
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I VI ATNR DILDSALLRPGR DR++ P+ R
Sbjct: 261 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 320
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+ILK+H ++L IA PG SG R + ++ ++ + +
Sbjct: 321 DILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 380
Query: 494 IDRIV 498
+ +++
Sbjct: 381 VAKVM 385
>WB|WBGene00004503 [details] [associations]
symbol:rpt-3 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
MINT:MINT-212949 STRING:P46502 PaxDb:P46502
EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
Uniprot:P46502
Length = 414
Score = 439 (159.6 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 92/246 (37%), Positives = 135/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
+++ D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAA 217
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKEN+P I+F+DEIDA+
Sbjct: 218 NTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGA 277
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ +T + VI ATNR D LD ALLRPGR DR++ +PD R +
Sbjct: 278 DREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQK 337
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
+ S DV L+ R SG R + + +K+++
Sbjct: 338 RLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEK 397
Query: 493 SIDRIV 498
+ +V
Sbjct: 398 AYKNVV 403
Score = 50 (22.7 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 116 GVSSSRMSYSRFLEYLDKDRVK---KVDLFENGTIAIVEAISPELGNRVQRVRV-QLPGL 171
G ++ Y R L LD++ +K V L + A+V+ + PE + +Q +R + P +
Sbjct: 100 GSTTGSNYYVRVLSILDRELLKPGCSVALHKYSN-ALVDVLPPEADSSIQMLRPDEKPDI 158
Query: 172 S 172
S
Sbjct: 159 S 159
>ASPGD|ASPL0000064945 [details] [associations]
symbol:AN6988 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
Uniprot:Q5AXJ2
Length = 389
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 95/245 (38%), Positives = 144/245 (58%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+D + G+D+ ++ EV+E LK PE F ++G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 130 TYDMIGGLDQQIKEIKEVIELGLKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 189
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID++ +
Sbjct: 190 TDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIDSAGSGD 249
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE I +I ATNR DILD ALLRPGR DR++ P + R
Sbjct: 250 SEVQRTMLELLNQLDGFEPTKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVEARA 309
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL++H + ++L IA + G SG R + ++ ++ D +
Sbjct: 310 DILRIHSRSMNLTRGINLTKIAEKMNGCSGAELKGVCTEAGMYALRERRVHVTQEDFDLA 369
Query: 494 IDRIV 498
+I+
Sbjct: 370 TAKIL 374
>CGD|CAL0005689 [details] [associations]
symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0045899 "positive regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
Length = 444
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 94/254 (37%), Positives = 141/254 (55%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E VT+ DV G E + EVVE L PERF +G PKG+LL GPPGTGKTL
Sbjct: 177 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLSPERFVKLGIDPPKGILLYGPPGTGKTLC 236
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+A+A F + GSE V+ +VG GA VR+LF+ A+ CI+F DE+DA+
Sbjct: 237 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEVDAIGGARF 296
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
++E ++T+ +L+T++DGF+ I V+ ATNR + LD ALLRPGR DR+V +
Sbjct: 297 DDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 356
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GR I ++H + D+ ++I+ P +G R + +
Sbjct: 357 PDLEGRANIFRIHSKTMSVEKDIRWELISRLCPNATGAELRSVCTEAGMFAIRARRKVAN 416
Query: 487 SKEIDDSIDRIVAG 500
K+ ++D+++ G
Sbjct: 417 EKDFLKAVDKVIKG 430
>SGD|S000005785 [details] [associations]
symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IMP] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0019904 "protein domain specific binding"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
Uniprot:P53549
Length = 437
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 101/257 (39%), Positives = 148/257 (57%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
+TFD + G+ E ++ EV+E LK PE F +G + PKGVLL GPPGTGKTLLAKA+A
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
G F S V+ ++G A +R++F AKE+ PCI+F+DE+DA+
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 373 NDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
+ E ++TL +LLT+MDGF+ G T II+ ATNR D LD ALLRPGR DR+V + +P+
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
GR EI K+H + K + + + GF+G R + I+ ++
Sbjct: 356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDL 415
Query: 491 DDSIDRI--VAGMEGTV 505
++ ++ V +EGT+
Sbjct: 416 MKAVRKVAEVKKLEGTI 432
>TAIR|locus:2079742 [details] [associations]
symbol:RPT5A "regulatory particle triple-A ATPase 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
sac development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
Length = 424
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 94/245 (38%), Positives = 142/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
++D+ G+++ Q+ +E + + ERF +G R PKGVLL GPPGTGKTL+A+A A +
Sbjct: 170 YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F+ AKE APCI+F+DEIDA+ +
Sbjct: 230 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDR 289
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF + I VIAATNRADILD AL+R GR DR++ P R
Sbjct: 290 EVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARAR 349
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
IL++H DV+ + +A T F+G RR ++ ++ ++ I
Sbjct: 350 ILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 409
Query: 495 DRIVA 499
++ A
Sbjct: 410 IQVQA 414
>TAIR|locus:2206380 [details] [associations]
symbol:FTSH12 "FTSH protease 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS;IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009536 "plastid" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009658 "chloroplast
organization" evidence=RCA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 HSSP:Q01853
eggNOG:COG0465 GO:GO:0009535 EMBL:AC007202 GO:GO:0004176 KO:K03798
EMBL:AY035166 IPI:IPI00518515 PIR:A96827 RefSeq:NP_565212.1
UniGene:At.48395 UniGene:At.66914 ProteinModelPortal:Q9SAJ3
SMR:Q9SAJ3 STRING:Q9SAJ3 MEROPS:M41.A06 PaxDb:Q9SAJ3 PRIDE:Q9SAJ3
EnsemblPlants:AT1G79560.1 GeneID:844294 KEGG:ath:AT1G79560
GeneFarm:1828 TAIR:At1g79560 HOGENOM:HOG000090030 InParanoid:Q9SAJ3
OMA:QAVIFIC PhylomeDB:Q9SAJ3 ProtClustDB:CLSN2689328
Genevestigator:Q9SAJ3 Uniprot:Q9SAJ3
Length = 1008
Score = 478 (173.3 bits), Expect = 1.8e-44, P = 1.8e-44
Identities = 122/371 (32%), Positives = 191/371 (51%)
Query: 271 EVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330
E++ ++ P ++ +GVLL GPPGTGKTL A+ +A E+G+PF SG+EF +
Sbjct: 507 ELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSE 566
Query: 331 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF 390
GA+++ ++F A+ NAP VFVDEIDA+ + R T L+ ++DG
Sbjct: 567 KS-GAAKINEMFSIARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGE 621
Query: 391 EGNTGI---------IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441
+ TGI I I ATNR D LD +R GR DR++ + +PD + R +I VH +
Sbjct: 622 KEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSA 681
Query: 442 NKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDR-IVAG 500
K D+ + RT GFSG R+G++ I ++I D +D+ ++ G
Sbjct: 682 GKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEG 741
Query: 501 MEGTVMTDGKS-----------KSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGL 549
M G ++T+ + K L+A HE GH + L P D L+P G+ +
Sbjct: 742 M-GVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAV 800
Query: 550 TWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQ 606
+ F P +D + + ++V GGR AE V+FG+ VT G DL++IT +A++
Sbjct: 801 SVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFGD-NVTDGGKDDLEKITKIARE 859
Query: 607 MVTTFGMSEIG 617
MV + + +G
Sbjct: 860 MVISPQSARLG 870
Score = 178 (67.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 59/199 (29%), Positives = 98/199 (49%)
Query: 510 KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQL 566
+ K L+A HE GH + L P D L+P G+ ++ F P +D + +
Sbjct: 761 EKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYM 820
Query: 567 FARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTT-----FGMSE----IG 617
++V GGR AE V+FG+ VT G DL++IT +A++MV + G+++ IG
Sbjct: 821 KMQMVVAHGGRCAERVVFGD-NVTDGGKDDLEKITKIAREMVISPQSARLGLTQLVKKIG 879
Query: 618 PWSLMDGSQSGDVIMRM-----MARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNRE 672
L D + G++I + MS +++E + R + E+A++ +R NR
Sbjct: 880 MVDLPD-NPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEELAMNALRANRH 938
Query: 673 AIDKIVEVLLEKETMSGDE 691
+D I LLEK ++G E
Sbjct: 939 ILDLITRELLEKSRITGLE 957
>SGD|S000001628 [details] [associations]
symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
GermOnline:YKL145W Uniprot:P33299
Length = 467
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 94/254 (37%), Positives = 142/254 (55%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E VT+ DV G + + EVVE L PERF +G PKG+LL GPPGTGKTL
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+A+A F + GSE V+ +VG GA VR+LF+ A+ CI+F DEIDAV
Sbjct: 260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARF 319
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
++E ++T+ +L+T++DGF+ I V+ ATNR + LD ALLRPGR DR+V +
Sbjct: 320 DDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GR I ++H + + + ++I+ P +G R + +
Sbjct: 380 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 439
Query: 487 SKEIDDSIDRIVAG 500
K+ ++D++++G
Sbjct: 440 EKDFLKAVDKVISG 453
>FB|FBgn0028687 [details] [associations]
symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
Length = 433
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 94/253 (37%), Positives = 141/253 (55%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+E VT+ DV G E + EVVE L PE+F +G PKGVLL GPPGTGKTL
Sbjct: 165 QVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTL 224
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
A+A+A F + GSE V+ +VG GA VR+LF+ A+ C++F DEIDA+
Sbjct: 225 CARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGAR 284
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++E ++T+ +L+ ++DGF+ I V+ ATNR D LD AL+RPGR DR+V
Sbjct: 285 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFG 344
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD GR+ I K+H + + D+ D++A P +G R +
Sbjct: 345 LPDQDGRSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 404
Query: 486 SSKEIDDSIDRIV 498
+ K+ +++ +++
Sbjct: 405 TEKDFLEAVKKVI 417
>TAIR|locus:2036099 [details] [associations]
symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
Genevestigator:O04019 Uniprot:O04019
Length = 423
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 93/245 (37%), Positives = 143/245 (58%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
++D+ G+++ Q+ +E + + E+F +G R PKGVLL GPPGTGKTL+A+A A +
Sbjct: 169 YNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQT 228
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE +PCI+F+DEIDA+ +
Sbjct: 229 NATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 288
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF + I VIAATNRADILD AL+R GR DR++ P R
Sbjct: 289 EVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGR 348
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
IL++H +ADV+ + +A T F+G RR ++ ++ ++ I
Sbjct: 349 ILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 408
Query: 495 DRIVA 499
++ A
Sbjct: 409 IQVQA 413
>DICTYBASE|DDB_G0292382 [details] [associations]
symbol:psmC5 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
ProtClustDB:CLSZ2429412 Uniprot:P34124
Length = 403
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 98/259 (37%), Positives = 149/259 (57%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S K + P++ T+D V G+D+ ++ EV+E +K PE F ++G PKGVLL GPPG
Sbjct: 132 SLMKVEKIPDS--TYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPG 189
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+A F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID+
Sbjct: 190 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDS 249
Query: 361 VXXXXXXXXXXXND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
+ D E ++T+ +LL ++DGFE I V+ TNR DILD ALLRPGR D
Sbjct: 250 IGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRID 309
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGR 479
R++ P GR +ILK+H ++L I+ + G SG R
Sbjct: 310 RKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALR 369
Query: 480 RGKAAISSKEIDDSIDRIV 498
+ +S ++ + ++ +++
Sbjct: 370 ERRVHVSQEDFEMAVSKVM 388
>TAIR|locus:2147670 [details] [associations]
symbol:RPT6A "regulatory particle triple-A ATPase 6A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
Length = 419
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 96/256 (37%), Positives = 149/256 (58%)
Query: 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGK 303
K + P++ T+D + G+D+ ++ EV+E +K PE F ++G PKGVLL GPPGTGK
Sbjct: 151 KVEKVPDS--TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208
Query: 304 TLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXX 363
TLLA+A+A F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID++
Sbjct: 209 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 268
Query: 364 XXXXXXXXXND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 422
D E ++T+ +LL ++DGFE + I V+ ATNR DILD ALLRPGR DR++
Sbjct: 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKI 328
Query: 423 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGK 482
P+ R +ILK+H + L IA + G SG R +
Sbjct: 329 EFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR 388
Query: 483 AAISSKEIDDSIDRIV 498
++ ++ + ++ +++
Sbjct: 389 VHVTQEDFEMAVAKVM 404
>TAIR|locus:2147685 [details] [associations]
symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
Length = 419
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 96/256 (37%), Positives = 149/256 (58%)
Query: 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGK 303
K + P++ T+D + G+D+ ++ EV+E +K PE F ++G PKGVLL GPPGTGK
Sbjct: 151 KVEKVPDS--TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208
Query: 304 TLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXX 363
TLLA+A+A F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID++
Sbjct: 209 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 268
Query: 364 XXXXXXXXXND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 422
D E ++T+ +LL ++DGFE + I V+ ATNR DILD ALLRPGR DR++
Sbjct: 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKI 328
Query: 423 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGK 482
P+ R +ILK+H + L IA + G SG R +
Sbjct: 329 EFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR 388
Query: 483 AAISSKEIDDSIDRIV 498
++ ++ + ++ +++
Sbjct: 389 VHVTQEDFEMAVAKVM 404
>DICTYBASE|DDB_G0284415 [details] [associations]
symbol:psmC3 "26S proteasome ATPase 3 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
Length = 421
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 94/251 (37%), Positives = 141/251 (56%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E V + ERF +IG + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 167 YSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQT 226
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
+ ++G + V+MF+G GA VRD F AKE P I+F+DE+DA+ +
Sbjct: 227 NSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDR 286
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF + I VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 287 EVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAH 346
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
IL++H ADV+ D +A + F+G RRG + + +
Sbjct: 347 ILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGC 406
Query: 495 DRIVAGMEGTV 505
++A + T+
Sbjct: 407 VEVMAKKKKTL 417
>UNIPROTKB|G4N517 [details] [associations]
symbol:MGG_05193 "Cell division control protein 48"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
Uniprot:G4N517
Length = 820
Score = 465 (168.7 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 96/215 (44%), Positives = 125/215 (58%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN V ++D+ G+DE KQD E V++ + PE+F G +GVL GPPGTGKT+LAK
Sbjct: 491 PN--VRWEDIGGLDEVKQDLREQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAK 548
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
A+A E F S+ G E + M+ G S +RD+F KA+ APCIVF+DE+D++
Sbjct: 549 AVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDELDSIAKARGGS 608
Query: 369 XXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428
++ +NQLLTEMDG + VI ATNR + LD AL RPGR D + V +PD
Sbjct: 609 VGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDSLIYVPLPD 668
Query: 429 IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
GR ILK DV L IA +T GFSG
Sbjct: 669 ELGRLSILKAQLRKTPVSDDVDLQYIANKTHGFSG 703
Score = 453 (164.5 bits), Expect = 7.6e-41, P = 7.6e-41
Identities = 102/255 (40%), Positives = 144/255 (56%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P+ F +IG + P+GVLL GPPGTGKTL+A+A+A
Sbjct: 219 VGYDDIGGCRKQMAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPGTGKTLMARAVAN 278
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++N+P I+F+DEID++
Sbjct: 279 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT---- 334
Query: 373 NDEREQ-TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ ++QLLT MDG + + ++V+AATNR + +D AL R GRFDR+V + +PD G
Sbjct: 335 NGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTG 394
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R EIL++H N K DV L+ IA T G+ G R I E
Sbjct: 395 RLEILQIHTKNMKLGDDVDLEQIAAETHGYVGSDVAALCSEAAMQQIREKMDLIDLDE-- 452
Query: 492 DSIDRIVAGMEGTVM 506
D+ID V G M
Sbjct: 453 DTIDAEVLDSLGVTM 467
>SGD|S000003016 [details] [associations]
symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
"proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019904 "protein domain specific binding"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
repair" evidence=IGI] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
GermOnline:YGL048C Uniprot:Q01939
Length = 405
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 92/257 (35%), Positives = 149/257 (57%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+D V G+ + ++ EV+E +K PE F ++G PKGV+L GPPGTGKTLLA+A+A
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SG+E V+ ++G G+ VR+LF A+E+AP I+F+DEID++ +
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE + I +I ATNR DILD ALLRPGR DR++ P + R
Sbjct: 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
EIL++H ++L +A + G SG R + ++ ++ + +
Sbjct: 326 EILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385
Query: 494 IDRIVAGMEGTVMTDGK 510
+ +++ + T ++ K
Sbjct: 386 VGKVMNKNQETAISVAK 402
>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
symbol:PFD0665c "26s proteasome aaa-ATPase
subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
Uniprot:Q8I1V1
Length = 392
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 93/246 (37%), Positives = 140/246 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+ V + D+ G+D KQ+ E VE L PE + IG P G+L+ GPPGTGKT+
Sbjct: 128 QITERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTM 187
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
L KA+A E V F + GSEFV+ ++G G VRD+F+ A+EN+P I+F+DE+DA+
Sbjct: 188 LVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEVDAIATKR 247
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
+ E ++ L +LL +MDGF+ +T + VI ATNRAD LD ALLRPGR DR++
Sbjct: 248 FDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 307
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD + + I + S +DV+++ +RT S R+ + I
Sbjct: 308 LPDRKQKRLIFQTIISKMNVSSDVNIESFVVRTDKISAADIAAIAQEAGMQAIRKNRYII 367
Query: 486 SSKEID 491
++ + +
Sbjct: 368 TANDFE 373
>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
symbol:PF11_0314 "26S protease subunit
regulatory subunit 6a, putative" species:5833 "Plasmodium
falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 95/252 (37%), Positives = 143/252 (56%)
Query: 256 FDDVAGVDEAKQDFME--VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ D+ G+D+ +D +E V+ L K E+F IG + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 185 YSDIGGLDKQIEDLVEAIVLPMLHK-EKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQ 243
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 244 TNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGD 303
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF + + VIAATNR D LD ALLR GR DR++ + P+ R
Sbjct: 304 REVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRA 363
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
IL++H DV+ + +A T F+G RRG I ++ +
Sbjct: 364 RILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFVEG 423
Query: 494 IDRIVAGMEGTV 505
I +++ + T+
Sbjct: 424 ITSVLSKKKSTL 435
>UNIPROTKB|F1NDQ1 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
Length = 385
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 131 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 190
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 191 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 250
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 251 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 310
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 311 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 370
Query: 495 DRIVA 499
+ A
Sbjct: 371 LEVQA 375
>UNIPROTKB|F1P3L9 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
Length = 389
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 135 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 194
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 195 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 254
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 255 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 314
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 315 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 374
Query: 495 DRIVA 499
+ A
Sbjct: 375 LEVQA 379
>UNIPROTKB|F1PBK7 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
Length = 439
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 185 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 245 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 304
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 305 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 364
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 365 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 424
Query: 495 DRIVA 499
+ A
Sbjct: 425 LEVQA 429
>UNIPROTKB|E9PM69 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
Bgee:E9PM69 Uniprot:E9PM69
Length = 397
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 143 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 202
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 203 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 262
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 263 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 322
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 323 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 382
Query: 495 DRIVA 499
+ A
Sbjct: 383 LEVQA 387
>UNIPROTKB|P17980 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
"blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
Length = 439
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 185 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 245 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 304
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 305 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 364
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 365 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 424
Query: 495 DRIVA 499
+ A
Sbjct: 425 LEVQA 429
>UNIPROTKB|F1SID4 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
Length = 446
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 192 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 251
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 252 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 311
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 312 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 371
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 372 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 431
Query: 495 DRIVA 499
+ A
Sbjct: 432 LEVQA 436
>UNIPROTKB|Q8I1V1 [details] [associations]
symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
Length = 392
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 93/246 (37%), Positives = 140/246 (56%)
Query: 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTL 305
Q+ V + D+ G+D KQ+ E VE L PE + IG P G+L+ GPPGTGKT+
Sbjct: 128 QITERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTM 187
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
L KA+A E V F + GSEFV+ ++G G VRD+F+ A+EN+P I+F+DE+DA+
Sbjct: 188 LVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFIDEVDAIATKR 247
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
+ E ++ L +LL +MDGF+ +T + VI ATNRAD LD ALLRPGR DR++
Sbjct: 248 FDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 307
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAI 485
+PD + + I + S +DV+++ +RT S R+ + I
Sbjct: 308 LPDRKQKRLIFQTIISKMNVSSDVNIESFVVRTDKISAADIAAIAQEAGMQAIRKNRYII 367
Query: 486 SSKEID 491
++ + +
Sbjct: 368 TANDFE 373
>UNIPROTKB|Q8II60 [details] [associations]
symbol:PF11_0314 "26S protease subunit regulatory subunit
6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 95/252 (37%), Positives = 143/252 (56%)
Query: 256 FDDVAGVDEAKQDFME--VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
+ D+ G+D+ +D +E V+ L K E+F IG + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 185 YSDIGGLDKQIEDLVEAIVLPMLHK-EKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQ 243
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 244 TNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGD 303
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF + + VIAATNR D LD ALLR GR DR++ + P+ R
Sbjct: 304 REVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRA 363
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
IL++H DV+ + +A T F+G RRG I ++ +
Sbjct: 364 RILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFVEG 423
Query: 494 IDRIVAGMEGTV 505
I +++ + T+
Sbjct: 424 ITSVLSKKKSTL 435
>MGI|MGI:1098754 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
NextBio:295874 Bgee:O88685 Genevestigator:O88685
GermOnline:ENSMUSG00000002102 Uniprot:O88685
Length = 442
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 188 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 247
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 248 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 307
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 308 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 367
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 368 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 427
Query: 495 DRIVA 499
+ A
Sbjct: 428 LEVQA 432
>POMBASE|SPBC23G7.12c [details] [associations]
symbol:rpt6 "19S proteasome regulatory subunit Rpt6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
Length = 403
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 93/246 (37%), Positives = 143/246 (58%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T++ V G+++ ++ EV+E +K PE F ++G PKG+LL GPPGTGKTLLA+A+A
Sbjct: 143 TYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHH 202
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID++
Sbjct: 203 TDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSG 262
Query: 374 D-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
D E ++T+ +LL ++DGFE I VI ATNR DILD ALLRPGR DR++ P R
Sbjct: 263 DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEAR 322
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
EIL++H + + L IA + G SG R + ++ ++ +
Sbjct: 323 AEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFEL 382
Query: 493 SIDRIV 498
++ +++
Sbjct: 383 AVAKVL 388
>RGD|61905 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0001824 "blastocyst development"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
Length = 439
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 185 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 245 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 304
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 305 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 364
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 365 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 424
Query: 495 DRIVA 499
+ A
Sbjct: 425 LEVQA 429
>UNIPROTKB|Q6P6U2 [details] [associations]
symbol:Psmc3 "26S protease regulatory subunit 6A"
species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
Genevestigator:Q6P6U2 Uniprot:Q6P6U2
Length = 442
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/245 (37%), Positives = 141/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 188 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 247
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 248 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 307
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 308 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 367
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 368 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 427
Query: 495 DRIVA 499
+ A
Sbjct: 428 LEVQA 432
>UNIPROTKB|H9KYT1 [details] [associations]
symbol:LOC430766 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
Uniprot:H9KYT1
Length = 538
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 87/211 (41%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 206 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 265
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 266 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 325
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 326 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 385
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV LD +A T GFSG
Sbjct: 386 VAILKANLRKSPVAKDVDLDFLAKMTNGFSG 416
Score = 278 (102.9 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 68/187 (36%), Positives = 97/187 (51%)
Query: 322 SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLN 381
SG E + G S +R F++A++NAP I+F+DE+DA+ ER + ++
Sbjct: 2 SGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV--ER-RIVS 58
Query: 382 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441
QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR EIL++H
Sbjct: 59 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 118
Query: 442 NKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGM 501
N K DV L+ + T G G R+ K + E D++ID V
Sbjct: 119 NMKLADDVDLEQVGNETHGHVGADLAALCSEAALQAIRK-KMDLIDLE-DETIDAEVMNS 176
Query: 502 EGTVMTD 508
M D
Sbjct: 177 LAVTMDD 183
>ASPGD|ASPL0000010049 [details] [associations]
symbol:AN4236 species:162425 "Emericella nidulans"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
Uniprot:Q5B5E4
Length = 465
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 94/252 (37%), Positives = 142/252 (56%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ ++ +E + + +K+ ERF +G + PKG L+ GPPGTGKTLLA+A A E
Sbjct: 210 YTDIGGLDKQIEEIVEAIVWPMKEAERFKKLGIKAPKGALMYGPPGTGKTLLARACAAET 269
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DAV +
Sbjct: 270 NATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFIDELDAVGTKRFDSEKSGDR 329
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF + I V+AATNR D+LD ALLR GR DR++ +P+ R
Sbjct: 330 EVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPALLRSGRLDRKIEFPLPNEEARAN 389
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
IL++H + V+ +A T F G R+G + I + D+I
Sbjct: 390 ILQIHSRKMTVEDSVNWAELARSTDEFGGAQLKAVCVEAGMIALRKGHSKIGHENYVDAI 449
Query: 495 DRIVAGMEGTVM 506
+ A + T M
Sbjct: 450 AEVQAKKKDTNM 461
>SGD|S000005643 [details] [associations]
symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
Uniprot:P33297
Length = 434
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 89/260 (34%), Positives = 147/260 (56%)
Query: 242 SKAK-FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPP 299
S+ K +++ T+ DV G+D+ ++ +E + +K+ ++F +G R PKG L+ GPP
Sbjct: 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPP 224
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGKTLLA+A A + F ++ + V+M++G GA VRD F AKE AP I+F+DE+D
Sbjct: 225 GTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419
A+ + E ++T+ +LL ++DGF + + V+AATNR D+LD ALLR GR D
Sbjct: 285 AIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLD 344
Query: 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGR 479
R++ +P R +IL++H D D++ +A T F+G R
Sbjct: 345 RKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
Query: 480 RGKAAISSKEIDDSIDRIVA 499
G++++ ++ + I + A
Sbjct: 405 NGQSSVKHEDFVEGISEVQA 424
>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
symbol:vcp "valosin containing protein"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
break" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:2000058 "regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
Length = 806
Score = 464 (168.4 bits), Expect = 8.0e-43, P = 8.0e-43
Identities = 89/215 (41%), Positives = 131/215 (60%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN +T++D+ G+D+ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAK
Sbjct: 472 PN--ITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
AIA E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 369 XXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD
Sbjct: 590 VGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 429 IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ R ILK + DV LD +A T GFSG
Sbjct: 650 EKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSG 684
Score = 453 (164.5 bits), Expect = 7.1e-41, P = 7.1e-41
Identities = 105/267 (39%), Positives = 148/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ GV + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>ASPGD|ASPL0000036562 [details] [associations]
symbol:AN2904 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
OMA:EDAYSAQ Uniprot:C8VJ79
Length = 422
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 99/254 (38%), Positives = 141/254 (55%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT+ DV G+D KQ+ E VE L + + IG P+GVLL GPPGTGKT+L KA+A
Sbjct: 163 VTYADVGGLDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 222
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F ++GSEFV+ ++G G VRD+F+ A+EN+P I+F+DEIDA+
Sbjct: 223 STTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGA 282
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGFE + + VI ATNRAD LD ALLRPGR DR++ + P +R R
Sbjct: 283 DREVQRILLELLNQMDGFEQTSNVKVIMATNRADTLDPALLRPGRLDRKI--EFPSLRDR 340
Query: 433 TE---ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
E I S +V LD + +R SG R+ + I +
Sbjct: 341 RERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIQSD 400
Query: 490 IDDSID-RIVAGME 502
++D+ ++ G E
Sbjct: 401 LEDAYSAQVKTGQE 414
>POMBASE|SPCC1682.16 [details] [associations]
symbol:rpt4 "19S proteasome regulatory subunit Rpt4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISM] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=NAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
NextBio:20800360 Uniprot:O74445
Length = 388
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 92/213 (43%), Positives = 133/213 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
++F V G++E ++ EV+E LK PE F +G + PKGVLL GPPGTGKTLLA+A+A
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAA 188
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
GV F + S V+ ++G A +R++F AKE+ PC++F+DEIDA+
Sbjct: 189 SLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSA 248
Query: 373 NDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
+ E ++TL +LL +MDGF+ G T II+ ATNR D LD ALLRPGR DR++ + +P+
Sbjct: 249 DREIQRTLMELLNQMDGFDYLGQTKIIM--ATNRPDTLDPALLRPGRLDRKIEIPLPNEV 306
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
GR EILK+H ++ + + T G +G
Sbjct: 307 GRMEILKIHLEKVSKQGEIDYEALVKLTDGTNG 339
>ZFIN|ZDB-GENE-060312-22 [details] [associations]
symbol:zgc:136908 "zgc:136908" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
Length = 805
Score = 455 (165.2 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 103/269 (38%), Positives = 149/269 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E + +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 192 KREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 251
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 252 GKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 311
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + ++V+AATNR + +D+AL R GRFDR+
Sbjct: 312 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDAALRRFGRFDRE 368
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
+ + +PD GR EIL++H N K DV L+ I+ T G G R+
Sbjct: 369 IDIGIPDSTGRLEILQIHTKNMKLSEDVDLEQISAETHGHVGADLAALCSEAALQAIRK- 427
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTDGK 510
K + E DDSID + M D K
Sbjct: 428 KMTLIDLE-DDSIDADLLNSLAVTMDDFK 455
Score = 448 (162.8 bits), Expect = 3.5e-40, P = 3.5e-40
Identities = 87/211 (41%), Positives = 128/211 (60%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V ++D+ G+DE K++ E+V++ ++ P++F G +GVL GPPG GKTLLAKAIA
Sbjct: 476 VNWEDIGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIAN 535
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VRD+F KA++ APCI+F DE+D++
Sbjct: 536 ECQANFVSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKARGGGAGDA 595
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD+ R
Sbjct: 596 GGAADRVINQILTEMDGMTNKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDMPSR 655
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
T IL+ + DV L ++ T GFSG
Sbjct: 656 TAILRANLRKSPVAKDVDLMYLSKITEGFSG 686
Score = 48 (22.0 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 660 YEIALSQIRNNREAI-DKIVEVL-LEKETMSG-DEFRAILSEFVEIPAE 705
++ ALSQ +N A+ + +VEV + E + G DE + L E V+ P E
Sbjct: 454 FKWALSQ--SNPSALRETVVEVPHVNWEDIGGLDEVKRELQELVQYPVE 500
>UNIPROTKB|O42586 [details] [associations]
symbol:psmc3-b "26S protease regulatory subunit 6A-B"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
Xenbase:XB-GENE-1009853 Uniprot:O42586
Length = 404
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 91/245 (37%), Positives = 140/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 150 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 209
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 210 KATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDR 269
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ T + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 270 EVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 329
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 330 IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGI 389
Query: 495 DRIVA 499
+ A
Sbjct: 390 LEVQA 394
>SGD|S000002802 [details] [associations]
symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
Uniprot:P33298
Length = 428
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 95/244 (38%), Positives = 139/244 (56%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT+ DV G+D KQ+ E VE L + + + IG P+GVLL GPPGTGKT+L KA+A
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F ++GSEFV ++G G VRD+F+ A+ENAP I+F+DE+D++
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LLT+MDGF+ +T + VI ATNRAD LD ALLRPGR DR++ + P +R R
Sbjct: 289 DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKI--EFPSLRDR 346
Query: 433 TEILKVHG---SNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
E + G S + LD + +R SG R+ + I +
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 406
Query: 490 IDDS 493
++++
Sbjct: 407 LEEA 410
>CGD|CAL0005827 [details] [associations]
symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
Length = 428
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 93/218 (42%), Positives = 132/218 (60%)
Query: 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLA 307
EP ++F+ + G+ E ++ EV+E LK PE FT +G + PKGVLL GPPGTGKTLLA
Sbjct: 165 EPGE-ISFNGIGGLTEQIRELREVIELPLKNPELFTRVGIKPPKGVLLYGPPGTGKTLLA 223
Query: 308 KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXX 367
KA+A G F S V+ ++G A +R++F AKE+ PCI+F+DE+DA+
Sbjct: 224 KAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYAKEHEPCIIFMDEVDAIGGRRFS 283
Query: 368 XXXXXNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
+ E ++TL +LL +MDGF+ G T II+ ATNR D LD ALLR GR DR++ +
Sbjct: 284 EGTSADREIQRTLMELLNQMDGFDTLGQTKIIM--ATNRPDTLDPALLRAGRLDRKIEIG 341
Query: 426 VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+P+ GR EI K+H S + + + GF+G
Sbjct: 342 LPNEAGRLEIFKIHTSKVAKQGEFDFEAAVKMSDGFNG 379
>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory
subunit 4, putative" species:5833 "Plasmodium falciparum"
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 93/252 (36%), Positives = 139/252 (55%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
++ D+ G++ Q+ E VE L PE + IG + PKGV+L GPPGTGKTLLAKA+A E
Sbjct: 191 SYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANE 250
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR++FK A+E+AP IVF+DEIDAV
Sbjct: 251 TSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGE 310
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR D LD AL+RPGR DR++ + PD + +
Sbjct: 311 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKR 370
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV L+ M SG R + I+ ++ +
Sbjct: 371 RIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMKITQADLRKA 430
Query: 494 IDRIVAGMEGTV 505
D+ + +G +
Sbjct: 431 RDKALFQKKGNI 442
>UNIPROTKB|F1NSP7 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
Uniprot:F1NSP7
Length = 439
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 182 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 241
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 301
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 302 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 361
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 362 RIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 421
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 422 KENVLYKKQEGT 433
>UNIPROTKB|F1NTZ4 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
Uniprot:F1NTZ4
Length = 438
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 181 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 240
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 241 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 300
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 301 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 360
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 361 RIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 420
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 421 KENVLYKKQEGT 432
>UNIPROTKB|Q8IJW0 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory subunit 4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 93/252 (36%), Positives = 139/252 (55%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
++ D+ G++ Q+ E VE L PE + IG + PKGV+L GPPGTGKTLLAKA+A E
Sbjct: 191 SYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANE 250
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR++FK A+E+AP IVF+DEIDAV
Sbjct: 251 TSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGE 310
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR D LD AL+RPGR DR++ + PD + +
Sbjct: 311 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKR 370
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV L+ M SG R + I+ ++ +
Sbjct: 371 RIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMKITQADLRKA 430
Query: 494 IDRIVAGMEGTV 505
D+ + +G +
Sbjct: 431 RDKALFQKKGNI 442
>ZFIN|ZDB-GENE-030131-666 [details] [associations]
symbol:psmc3 "proteasome (prosome, macropain) 26S
subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
Uniprot:F1QJQ2
Length = 427
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 91/245 (37%), Positives = 140/245 (57%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 173 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 232
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 233 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 292
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ N + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 293 EVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 352
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A T F+G RRG ++ ++ + I
Sbjct: 353 IMQIHSRKMNVCPDVNFEELARCTDDFNGAQCKAVCVEAGMIALRRGATELNHEDYMEGI 412
Query: 495 DRIVA 499
+ A
Sbjct: 413 LEVQA 417
>DICTYBASE|DDB_G0284517 [details] [associations]
symbol:psmC6 "26S protease regulatory subunit S10B"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
Length = 393
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 86/210 (40%), Positives = 131/210 (62%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ ++ EVVE L PE F +G + PKGVLL GPPGTGKTLLA+AIA
Sbjct: 134 VSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIAS 193
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + S V+ ++G A +R++F A+++ PC++F+DEIDA+
Sbjct: 194 NLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSA 253
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + + +I ATNR D+LD ALLRPGR DR++ + +P+ GR
Sbjct: 254 DREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGR 313
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFS 462
++LK+H +N DV + IA GF+
Sbjct: 314 VDVLKIHAANITKHGDVDYEAIAKLADGFN 343
>UNIPROTKB|A4FUZ3 [details] [associations]
symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
InParanoid:A4FUZ3 Uniprot:A4FUZ3
Length = 440
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>UNIPROTKB|F1PQ40 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
Uniprot:F1PQ40
Length = 440
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>UNIPROTKB|B4DR63 [details] [associations]
symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
Uniprot:B4DR63
Length = 367
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 110 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 169
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 170 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 229
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 230 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 289
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 290 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 349
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 350 KENVLYKKQEGT 361
>UNIPROTKB|P62191 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
Length = 440
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>UNIPROTKB|F2Z5J1 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
KEGG:ssc:100155274 Uniprot:F2Z5J1
Length = 440
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>MGI|MGI:106054 [details] [associations]
symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
"TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
GermOnline:ENSMUSG00000021178 Uniprot:P62192
Length = 440
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>POMBASE|SPCC576.10c [details] [associations]
symbol:rpt3 "19S proteasome regulatory subunit Rpt3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
Length = 389
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 97/247 (39%), Positives = 136/247 (55%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ DV G+D KQ+ E VE L + + + IG P+GVLL GPPGTGKT+L KA+A
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 190
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ A+ENAP I+F+DEIDA+
Sbjct: 191 STAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGA 250
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV-DVPDIRG 431
+ E ++ L +LLT+MDGF+ + VI ATNRAD LD ALLRPGR DR++ D R
Sbjct: 251 DREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQ 310
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R + + + +V LD MR SG R+ + I +I+
Sbjct: 311 RRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIE 370
Query: 492 DSIDRIV 498
++ R V
Sbjct: 371 EAYARAV 377
>RGD|621097 [details] [associations]
symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
Length = 440
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 93/252 (36%), Positives = 142/252 (56%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
symbol:PFL2345c "tat-binding protein homolog"
species:5833 "Plasmodium falciparum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
Uniprot:Q8I4U5
Length = 435
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 93/218 (42%), Positives = 139/218 (63%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S K + P++ T++ V G+D+ ++ EV+E +K PE F ++G PKGVLL GPPG
Sbjct: 166 SLMKVEKVPDS--TYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPG 223
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+A F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID+
Sbjct: 224 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 283
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ + E ++T+ +LL ++DGFE I VI TNR DILD ALLRPGR DR
Sbjct: 284 IGSQRIEGEHG-DSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDR 342
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRT 458
++ P++ R EILK+H ++K + +D++ + T
Sbjct: 343 KIEFPNPNVEARMEILKIH--SRKMNLMRGIDMLKIAT 378
>UNIPROTKB|Q8I4U5 [details] [associations]
symbol:PFL2345c "Tat-binding protein homolog" species:36329
"Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
Length = 435
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 93/218 (42%), Positives = 139/218 (63%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S K + P++ T++ V G+D+ ++ EV+E +K PE F ++G PKGVLL GPPG
Sbjct: 166 SLMKVEKVPDS--TYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPG 223
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLA+A+A F +SGSE V+ ++G G+ VR+LF A+E+AP I+F+DEID+
Sbjct: 224 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 283
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ + E ++T+ +LL ++DGFE I VI TNR DILD ALLRPGR DR
Sbjct: 284 IGSQRIEGEHG-DSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEALLRPGRIDR 342
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRT 458
++ P++ R EILK+H ++K + +D++ + T
Sbjct: 343 KIEFPNPNVEARMEILKIH--SRKMNLMRGIDMLKIAT 378
>CGD|CAL0000732 [details] [associations]
symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 460 (167.0 bits), Expect = 6.4e-42, P = 6.4e-42
Identities = 94/212 (44%), Positives = 134/212 (63%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P+ F +IG + PKG+L+ GPPGTGKT++A+A+A
Sbjct: 212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVAN 271
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++N+P I+F+DEID++
Sbjct: 272 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDKT---- 327
Query: 373 NDEREQ-TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ ++QLLT MDG + + ++VIAATNR + +D AL R GRFDR+V + VPD G
Sbjct: 328 NGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEG 387
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R EIL++H N K DV L+ IA T GF G
Sbjct: 388 RLEILRIHTKNMKLADDVDLEAIASETHGFVG 419
Score = 449 (163.1 bits), Expect = 2.9e-40, P = 2.9e-40
Identities = 91/214 (42%), Positives = 124/214 (57%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKA 309
N VT+DD+ G+D K + E VE+ + P+++ G KGVL GPPGTGKTLLAKA
Sbjct: 482 NVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKA 541
Query: 310 IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXX 369
+A E F S+ G E + M+ G S +RD+F KA+ AP +VF+DE+D++
Sbjct: 542 VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSH 601
Query: 370 XXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429
++ +NQLLTEMDG + VI ATNR D +D ALLRPGR D+ + V +PD
Sbjct: 602 GDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDE 661
Query: 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R IL+ N + + L+ IA T GFSG
Sbjct: 662 PARLSILQAQLRNTPLEPGLDLNEIAKITHGFSG 695
>UNIPROTKB|Q59WG3 [details] [associations]
symbol:CDC48 "Putative uncharacterized protein CDC48"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 460 (167.0 bits), Expect = 6.4e-42, P = 6.4e-42
Identities = 94/212 (44%), Positives = 134/212 (63%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P+ F +IG + PKG+L+ GPPGTGKT++A+A+A
Sbjct: 212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVAN 271
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++N+P I+F+DEID++
Sbjct: 272 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDKT---- 327
Query: 373 NDEREQ-TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ ++QLLT MDG + + ++VIAATNR + +D AL R GRFDR+V + VPD G
Sbjct: 328 NGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEG 387
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R EIL++H N K DV L+ IA T GF G
Sbjct: 388 RLEILRIHTKNMKLADDVDLEAIASETHGFVG 419
Score = 449 (163.1 bits), Expect = 2.9e-40, P = 2.9e-40
Identities = 91/214 (42%), Positives = 124/214 (57%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKA 309
N VT+DD+ G+D K + E VE+ + P+++ G KGVL GPPGTGKTLLAKA
Sbjct: 482 NVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKA 541
Query: 310 IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXX 369
+A E F S+ G E + M+ G S +RD+F KA+ AP +VF+DE+D++
Sbjct: 542 VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSH 601
Query: 370 XXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429
++ +NQLLTEMDG + VI ATNR D +D ALLRPGR D+ + V +PD
Sbjct: 602 GDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDE 661
Query: 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R IL+ N + + L+ IA T GFSG
Sbjct: 662 PARLSILQAQLRNTPLEPGLDLNEIAKITHGFSG 695
>ASPGD|ASPL0000032311 [details] [associations]
symbol:AN5747 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
Length = 393
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 88/213 (41%), Positives = 132/213 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
+ F + G+++ ++ EV+E LK PE F +G + PKGVLL GPPGTGKTLLA+A+A
Sbjct: 134 INFAGIGGLNDQIRELREVIELPLKNPELFQRVGIKPPKGVLLYGPPGTGKTLLARAVAS 193
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + S V+ ++G A +R++F AKE+ PCI+F+DEIDA+
Sbjct: 194 SMETNFLKVVSSAIVDKYIGESARLIREMFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSA 253
Query: 373 NDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
+ E ++TL +LL ++DGF+ G T II+ ATNR D LD ALLR GR DR++ + +P+
Sbjct: 254 DREIQRTLMELLNQLDGFDYLGKTKIIM--ATNRPDTLDPALLRAGRLDRKIEIPLPNEV 311
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
GR EILK+H S + + D+ + + + G +G
Sbjct: 312 GRLEILKIHSSTVQMEGDIDFESVVKMSDGLNG 344
>FB|FBgn0028686 [details] [associations]
symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
Uniprot:Q9V405
Length = 413
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 96/251 (38%), Positives = 135/251 (53%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S + Q + V++ D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG
Sbjct: 145 SISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPG 204
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
GKT+LAKA+A F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA
Sbjct: 205 CGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDA 264
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ + E ++ L +LL +MDGF+ T + VI ATNRAD LD ALLRPGR DR
Sbjct: 265 IATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR 324
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
++ +PD R + + S DV L+ R SG R
Sbjct: 325 KIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKISGADINAICQEAGMHAVRE 384
Query: 481 GKAAISSKEID 491
+ + +K+ +
Sbjct: 385 NRYIVLAKDFE 395
>UNIPROTKB|J9NWA6 [details] [associations]
symbol:LOC100687152 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
Uniprot:J9NWA6
Length = 434
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 90/245 (36%), Positives = 139/245 (56%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 180 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 239
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA +
Sbjct: 240 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDR 299
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ NT + VIAATNR DILD ALLR GR D+++ +P+ R
Sbjct: 300 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARAR 359
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H DV+ + +A F+G RRG ++ ++ + I
Sbjct: 360 IMQIHSRKMNVSPDVNYEELARCMDDFNGAQCKAVCVEAGMIALRRGTTELTHEDYMEGI 419
Query: 495 DRIVA 499
+ A
Sbjct: 420 LEVQA 424
>TAIR|locus:2161258 [details] [associations]
symbol:RPT3 "regulatory particle triple-A ATPase 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
stimulus" evidence=RCA] [GO:0009853 "photorespiration"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
GermOnline:AT5G58290 Uniprot:Q9SEI4
Length = 408
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 94/239 (39%), Positives = 132/239 (55%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V+++D+ G D KQ+ E VE L E + IG P+GVLL GPPGTGKT+LAKA+A
Sbjct: 152 VSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 211
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DE+DA+
Sbjct: 212 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGA 271
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 272 DREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 331
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
+ +V S +V L+ R S R+ + I K+ +
Sbjct: 332 RLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 390
>WB|WBGene00004505 [details] [associations]
symbol:rpt-5 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
Length = 430
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 91/245 (37%), Positives = 139/245 (56%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G D+ Q+ +E V + +RF +G PKGVL+ GPPGTGKT++A+A+A +
Sbjct: 176 YSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQT 235
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 236 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 295
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ N I VIAATNR D+LD ALLR GR DR++ + P+ R
Sbjct: 296 EVQRTMLELLNQLDGFQPNDDIKVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARAR 355
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H + DV+ + +A T F+G RR I ++ D+I
Sbjct: 356 IMQIHSRKMNVNKDVNFEELARCTDDFNGAQCKAVCVEAGMIALRRDATEILHEDFMDAI 415
Query: 495 DRIVA 499
+ A
Sbjct: 416 LEVQA 420
>UNIPROTKB|O76371 [details] [associations]
symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
InParanoid:O76371 NextBio:874627 Uniprot:O76371
Length = 430
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 91/245 (37%), Positives = 139/245 (56%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G D+ Q+ +E V + +RF +G PKGVL+ GPPGTGKT++A+A+A +
Sbjct: 176 YSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQT 235
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 236 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 295
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ N I VIAATNR D+LD ALLR GR DR++ + P+ R
Sbjct: 296 EVQRTMLELLNQLDGFQPNDDIKVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARAR 355
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
I+++H + DV+ + +A T F+G RR I ++ D+I
Sbjct: 356 IMQIHSRKMNVNKDVNFEELARCTDDFNGAQCKAVCVEAGMIALRRDATEILHEDFMDAI 415
Query: 495 DRIVA 499
+ A
Sbjct: 416 LEVQA 420
>SGD|S000002284 [details] [associations]
symbol:CDC48 "AAA ATPase involved in multiple processes"
species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:1900182 "positive regulation of
protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
evidence=IMP] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
[GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IMP] [GO:0016236
"macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0072671 "mitochondria-associated protein
catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
Uniprot:P25694
Length = 835
Score = 459 (166.6 bits), Expect = 9.7e-42, P = 9.7e-42
Identities = 102/255 (40%), Positives = 143/255 (56%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P+ F AIG + P+GVL+ GPPGTGKTL+A+A+A
Sbjct: 211 VGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVAN 270
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DEID++
Sbjct: 271 ETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKT---- 326
Query: 373 NDEREQ-TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ ++QLLT MDG + + ++VIAATNR + +D AL R GRFDR+V + +PD G
Sbjct: 327 NGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATG 386
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R E+L++H N K DV L+ +A T G+ G R I E
Sbjct: 387 RLEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDE-- 444
Query: 492 DSIDRIVAGMEGTVM 506
D ID V G M
Sbjct: 445 DEIDAEVLDSLGVTM 459
Score = 454 (164.9 bits), Expect = 6.0e-41, P = 6.0e-41
Identities = 91/214 (42%), Positives = 124/214 (57%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKA 309
+ VT+DDV G+DE K++ E VE+ + P+++T G KGVL GPPGTGKTLLAKA
Sbjct: 481 SVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKA 540
Query: 310 IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXX 369
+A E F S+ G E + M+ G S +RD+F KA+ AP +VF+DE+D++
Sbjct: 541 VATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSL 600
Query: 370 XXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429
++ +NQLLTEMDG + VI ATNR D +D A+LRPGR D+ + V +PD
Sbjct: 601 GDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDE 660
Query: 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R IL + + L IA T GFSG
Sbjct: 661 NARLSILNAQLRKTPLEPGLELTAIAKATQGFSG 694
>CGD|CAL0001552 [details] [associations]
symbol:PR26 species:5476 "Candida albicans" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 440 (159.9 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 96/252 (38%), Positives = 140/252 (55%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT+ DV G+D KQ+ E VE L + + ++ IG P+GVLL GPPGTGKT+L KA+A
Sbjct: 152 VTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 211
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F I+GSEFV+ ++G G VRD+F+ A+EN+P I+F+DEIDA+
Sbjct: 212 STTASFIRINGSEFVQKYLGEGPRMVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGA 271
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV-DVPDIRG 431
+ E ++ L +LL +MDGF+ + + VI ATNRAD LD ALLRPGR DR++ + D R
Sbjct: 272 DREVQRILLELLNQMDGFDQTSTVKVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRE 331
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R I S + LD + +R SG R+ + I +++
Sbjct: 332 RRLIFSTIASKMSLAPEADLDSLIIRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLE 391
Query: 492 DSI-DRIVAGME 502
++ ++ G E
Sbjct: 392 EAYTSQVKTGTE 403
>UNIPROTKB|Q90732 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
NextBio:20815872 Uniprot:Q90732
Length = 440
Score = 440 (159.9 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 92/252 (36%), Positives = 140/252 (55%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+ P IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + M SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ + EGT
Sbjct: 423 KENFLYKKTEGT 434
>UNIPROTKB|Q5A0L8 [details] [associations]
symbol:PR26 "Likely 26S proteasome regulatory particle
ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
"proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 440 (159.9 bits), Expect = 1.8e-41, P = 1.8e-41
Identities = 96/252 (38%), Positives = 140/252 (55%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT+ DV G+D KQ+ E VE L + + ++ IG P+GVLL GPPGTGKT+L KA+A
Sbjct: 152 VTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 211
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F I+GSEFV+ ++G G VRD+F+ A+EN+P I+F+DEIDA+
Sbjct: 212 STTASFIRINGSEFVQKYLGEGPRMVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGA 271
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV-DVPDIRG 431
+ E ++ L +LL +MDGF+ + + VI ATNRAD LD ALLRPGR DR++ + D R
Sbjct: 272 DREVQRILLELLNQMDGFDQTSTVKVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRE 331
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R I S + LD + +R SG R+ + I +++
Sbjct: 332 RRLIFSTIASKMSLAPEADLDSLIIRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLE 391
Query: 492 DSI-DRIVAGME 502
++ ++ G E
Sbjct: 392 EAYTSQVKTGTE 403
>FB|FBgn0015282 [details] [associations]
symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
[GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
Length = 439
Score = 439 (159.6 bits), Expect = 2.4e-41, P = 2.4e-41
Identities = 93/252 (36%), Positives = 140/252 (55%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L GPPGTGKTLLAKA+A +
Sbjct: 182 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 241
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDAV
Sbjct: 242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 301
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 302 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 361
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I +H S DV+L + M SG R + +++++ S
Sbjct: 362 RIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 421
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 422 KESVLYRKKEGT 433
>ZFIN|ZDB-GENE-040625-69 [details] [associations]
symbol:psmc1b "proteasome (prosome, macropain) 26S
subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
Length = 440
Score = 439 (159.6 bits), Expect = 2.4e-41, P = 2.4e-41
Identities = 92/252 (36%), Positives = 141/252 (55%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L G PGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DVSLD + + SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTVAEDVSLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>DICTYBASE|DDB_G0270784 [details] [associations]
symbol:psmC1 "TAT binding protein alpha"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
Uniprot:Q55BV5
Length = 439
Score = 438 (159.2 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 86/210 (40%), Positives = 127/210 (60%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
++ D+ G++ Q+ E +E L PE + IG + PKGV+L G PGTGKTLLAKA+A +
Sbjct: 182 SYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQ 241
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A E AP IVF+DEIDAV
Sbjct: 242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGE 301
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ T + VI ATNR + LD AL+RPGR DR++ +PDI+ +
Sbjct: 302 REIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKR 361
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+I ++H + DV+L+ M SG
Sbjct: 362 KIFEIHTAKMNLSEDVNLEEFVMSKDDLSG 391
>FB|FBgn0037742 [details] [associations]
symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
Uniprot:Q9VH79
Length = 405
Score = 438 (159.2 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 93/239 (38%), Positives = 133/239 (55%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
+++ D+ G+D KQ+ E VE L + + IG P+GVLL GPPG GKT+LAKA+A
Sbjct: 149 ISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTMLAKAVAH 208
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRDLF+ AK+N+P I+F+DEIDA+
Sbjct: 209 HTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTGA 268
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ T I VI ATNRAD LD ALLRPGR DR++ + +PD R +
Sbjct: 269 DREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQK 328
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
+ S DV L+ I R S R + +++K+ +
Sbjct: 329 RLVFTTITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHAVRENRYVVNAKDFE 387
>UNIPROTKB|E1BTS8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
GeneTree:ENSGT00700000104534 EMBL:AADN02060646 EMBL:AADN02060647
EMBL:AADN02060648 EMBL:AADN02060649 EMBL:AADN02060650
EMBL:AADN02060651 EMBL:AADN02060652 EMBL:AADN02060653
IPI:IPI00823321 Ensembl:ENSGALT00000039430 ArrayExpress:E1BTS8
Uniprot:E1BTS8
Length = 804
Score = 455 (165.2 bits), Expect = 3.8e-41, P = 3.8e-41
Identities = 87/211 (41%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 472 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 531
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 532 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 591
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 592 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 651
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV LD +A T GFSG
Sbjct: 652 VAILKANLRKSPVAKDVDLDFLAKMTNGFSG 682
Score = 369 (135.0 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 99/267 (37%), Positives = 134/267 (50%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G G S R KK AP + I
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGEGESACR---KKISP-APPPLKTAGIFKS 305
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 306 DDCFPSPQTHGEVER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 364
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 365 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 423
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 424 KMDLIDLE-DETIDAEVMNSLAVTMDD 449
>UNIPROTKB|F1P4V8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
Length = 810
Score = 455 (165.2 bits), Expect = 3.9e-41, P = 3.9e-41
Identities = 87/211 (41%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 478 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 537
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 538 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 597
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 598 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 657
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV LD +A T GFSG
Sbjct: 658 VAILKANLRKSPVAKDVDLDFLAKMTNGFSG 688
Score = 453 (164.5 bits), Expect = 7.3e-41, P = 7.3e-41
Identities = 103/268 (38%), Positives = 147/268 (54%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++ ++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEETEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
+ E E+ + +QLLT MDG + +IV+AATNR + +D AL R GRFDR
Sbjct: 310 ASDDCFPSPQTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 369
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
+V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 370 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 429
Query: 481 GKAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 430 -KMDLIDLE-DETIDAEVMNSLAVTMDD 455
>UNIPROTKB|E7ERY0 [details] [associations]
symbol:NVL "Nuclear valosin-containing protein-like"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AC092809 HGNC:HGNC:8070 ChiTaRS:NVL
IPI:IPI00946072 ProteinModelPortal:E7ERY0 SMR:E7ERY0
Ensembl:ENST00000482491 ArrayExpress:E7ERY0 Bgee:E7ERY0
Uniprot:E7ERY0
Length = 580
Score = 437 (158.9 bits), Expect = 4.2e-41, P = 4.2e-41
Identities = 92/224 (41%), Positives = 139/224 (62%)
Query: 246 FQMEPNTGVTFDDVAGVDEAKQDF-MEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKT 304
F PN VT+ D+ +++ +++ M ++ ++ P++F A+G P GVLL GPPG GKT
Sbjct: 296 FVTVPN--VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKT 353
Query: 305 LLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXX 364
LLAKA+A E+G+ F S+ G E + M+VG VR +F++AK +APC++F DE+DA+
Sbjct: 354 LLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR 413
Query: 365 XXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 424
+ + +NQLLTEMDG E + ++AATNR DI+D A+LRPGR D+ + V
Sbjct: 414 RSDRETGAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFV 470
Query: 425 DVPDIRGRTEILKV---HGSNKKFDADVSLDVIA--MRTPGFSG 463
+P R ILK +G+ DADV+L+ IA +R ++G
Sbjct: 471 GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 514
Score = 231 (86.4 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 55/154 (35%), Positives = 77/154 (50%)
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E +P ++ E V G ++R+LF++A NAPCI+F+DEIDA+
Sbjct: 45 ELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVAS--- 101
Query: 373 NDEREQTLNQLLTEMDGFEG---NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429
D + + QLLT MD ++VI ATNR D LD AL R GRFDR++ + +PD
Sbjct: 102 KDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDE 161
Query: 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R IL+ + +A TPGF G
Sbjct: 162 ASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVG 195
>CGD|CAL0002261 [details] [associations]
symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
Uniprot:Q5A0X3
Length = 454
Score = 437 (158.9 bits), Expect = 4.2e-41, P = 4.2e-41
Identities = 89/246 (36%), Positives = 140/246 (56%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ ++ +E V +K+ ++F +G + PKG L+ GPPGTGKTLLA+A A ++
Sbjct: 199 YSDIGGLDKQIEELIEAVVLPMKQADKFKNLGIKPPKGALMYGPPGTGKTLLARACAAQS 258
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
G F ++ + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 259 GATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSDKSGDR 318
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF + + V+AATNR D LD ALLR GR DR++ +P R
Sbjct: 319 EVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTLDPALLRSGRLDRKIEFPLPSEEARES 378
Query: 435 ILKVHGSNKKFDAD-VSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+LK+H D + V+ +A T F+G R GK+ I ++ ++
Sbjct: 379 VLKIHARKLHCDNNSVNWRELARSTDEFNGAQLKAVTVEAGMIALRNGKSIIKHEDFVEA 438
Query: 494 IDRIVA 499
I + A
Sbjct: 439 ISEVQA 444
>WB|WBGene00004504 [details] [associations]
symbol:rpt-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 437 (158.9 bits), Expect = 4.2e-41, P = 4.2e-41
Identities = 87/219 (39%), Positives = 130/219 (59%)
Query: 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGK 303
K E +++ DV G+ E ++ EVVE L PE F +G PKG LL GPPGTGK
Sbjct: 138 KMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGK 197
Query: 304 TLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXX 363
TLLA+A+A + F + S V+ ++G A +R++F A+++ PCIVF+DEIDA+
Sbjct: 198 TLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGG 257
Query: 364 XXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 423
+ E ++TL +LL ++DGF+ + VI ATNR D LD ALLRPGR DR++
Sbjct: 258 RRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIE 317
Query: 424 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 462
+ +P+ + R EILK+H + ++ + + + GFS
Sbjct: 318 IGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFS 356
>UNIPROTKB|O17071 [details] [associations]
symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 437 (158.9 bits), Expect = 4.2e-41, P = 4.2e-41
Identities = 87/219 (39%), Positives = 130/219 (59%)
Query: 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGK 303
K E +++ DV G+ E ++ EVVE L PE F +G PKG LL GPPGTGK
Sbjct: 138 KMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGK 197
Query: 304 TLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXX 363
TLLA+A+A + F + S V+ ++G A +R++F A+++ PCIVF+DEIDA+
Sbjct: 198 TLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGG 257
Query: 364 XXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 423
+ E ++TL +LL ++DGF+ + VI ATNR D LD ALLRPGR DR++
Sbjct: 258 RRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIE 317
Query: 424 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 462
+ +P+ + R EILK+H + ++ + + + GFS
Sbjct: 318 IGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFS 356
>UNIPROTKB|Q6GL04 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
"chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
"translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
protein catabolic process" evidence=ISS] [GO:0032403 "protein
complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
InParanoid:Q6GL04 Uniprot:Q6GL04
Length = 805
Score = 454 (164.9 bits), Expect = 5.2e-41, P = 5.2e-41
Identities = 87/211 (41%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV LD +A T GFSG
Sbjct: 654 IAILKANLRKSPVAKDVDLDFLAKMTNGFSG 684
Score = 449 (163.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>UNIPROTKB|O42587 [details] [associations]
symbol:psmc3-a "26S protease regulatory subunit 6A-A"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
Length = 405
Score = 436 (158.5 bits), Expect = 5.6e-41, P = 5.6e-41
Identities = 86/208 (41%), Positives = 128/208 (61%)
Query: 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
+ D+ G+D+ Q+ +E + + E+F +G + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 169 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 228
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
F ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 229 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 288
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
E ++T+ +LL ++DGF+ N + VIAATNR DILD ALLR GR DR++ +P+ R
Sbjct: 289 EVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 348
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFS 462
I+++H DV+ + +A R P S
Sbjct: 349 IMQIHSRKMNVSPDVNYEELA-RCPTIS 375
>ASPGD|ASPL0000069340 [details] [associations]
symbol:AN7254 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEP]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0051228
"mitotic spindle disassembly" evidence=IEA] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
"piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
Length = 823
Score = 454 (164.9 bits), Expect = 5.7e-41, P = 5.7e-41
Identities = 91/215 (42%), Positives = 129/215 (60%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN V ++D+ G++E K++ +E V++ + PE+F G +GVL GPPGTGKT+LAK
Sbjct: 494 PN--VRWEDIGGLEEVKRELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAK 551
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
A+A E F S+ G E + M+ G S +RD+F KA+ APC+VF+DE+D++
Sbjct: 552 AVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGS 611
Query: 369 XXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428
++ +NQLLTEMDG + VI ATNR + LD+AL+RPGR D V V +PD
Sbjct: 612 VGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPD 671
Query: 429 IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R ILK +DV ++ IA +T GFSG
Sbjct: 672 QASREGILKAQLRKTPVASDVDIEFIASKTHGFSG 706
Score = 452 (164.2 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 100/255 (39%), Positives = 143/255 (56%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P+ F +IG + P+G+L+ GPPGTGKTL+A+A+A
Sbjct: 222 VGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 281
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++N+P I+F+DEID++
Sbjct: 282 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKT---- 337
Query: 373 NDEREQ-TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ ++QLLT MDG + + ++V+AATNR + +D AL R GRFDR+V + +PD G
Sbjct: 338 NGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTG 397
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R EIL +H N K DV L+ IA T G+ G R I E
Sbjct: 398 RLEILSIHTKNMKLGEDVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE-- 455
Query: 492 DSIDRIVAGMEGTVM 506
D+ID V G M
Sbjct: 456 DTIDAEVLDSLGVTM 470
>DICTYBASE|DDB_G0288065 [details] [associations]
symbol:cdcD "CDC48 family AAA ATPase" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
[GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0051301 "cell division" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
InParanoid:P90532 Uniprot:P90532
Length = 793
Score = 453 (164.5 bits), Expect = 6.6e-41, P = 6.6e-41
Identities = 88/215 (40%), Positives = 129/215 (60%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
P T T++D+ G++ K++ E V++ ++ PE+F G + KGVL GPPG GKTLLAK
Sbjct: 470 PTT--TWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAK 527
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
AIA E F SI G E + M+ G + VR+LF KA++ APC++F DE+D++
Sbjct: 528 AIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSS 587
Query: 369 XXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD
Sbjct: 588 QGDAGGAGDRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 647
Query: 429 IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ R ILK + DV L+ + +T GFSG
Sbjct: 648 LPSRVAILKACLNKSPVAKDVDLEFLGQKTQGFSG 682
Score = 439 (159.6 bits), Expect = 4.7e-39, P = 4.7e-39
Identities = 89/211 (42%), Positives = 130/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ GV + E+VE L+ P+ F IG + PKG+LL GPPG GKT++A+A+A
Sbjct: 199 VGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVAN 258
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DEID++
Sbjct: 259 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEV 318
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
ER + ++QLLT MDG + +IV+ ATNR + +D AL R GRFDR++ + +PD GR
Sbjct: 319 --ER-RIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDITIPDATGR 375
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EI+++H N K D V L+ +A T G+ G
Sbjct: 376 LEIMRIHTKNMKLDETVDLEAVANETHGYVG 406
>WB|WBGene00007352 [details] [associations]
symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
"collagen and cuticulin-based cuticle development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
InParanoid:P54811 NextBio:884814 Uniprot:P54811
Length = 809
Score = 453 (164.5 bits), Expect = 7.2e-41, P = 7.2e-41
Identities = 105/274 (38%), Positives = 152/274 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E + +DD+ GV + E+VE L+ P+ F AIG + P+G+LL GPPGT
Sbjct: 196 KREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGT 255
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++ ++N P I+F+DEIDA+
Sbjct: 256 GKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAI 315
Query: 362 XXXXXXXXXXXNDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
N E E+ + +QLLT MDG +G + ++VIAATNR + +D AL R GRFDR
Sbjct: 316 APKREKT----NGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDR 371
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
++ + +PD GR EIL++H N K DV L+ IA GF G R
Sbjct: 372 EIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIRE 431
Query: 481 GKAAISSKE--ID-DSIDRIVAGMEGTVMTDGKS 511
I ++ ID + ++ + ME GKS
Sbjct: 432 KMELIDLEDDQIDAEVLNSLAVTMENFRFAQGKS 465
Score = 432 (157.1 bits), Expect = 3.8e-38, P = 3.8e-38
Identities = 87/216 (40%), Positives = 126/216 (58%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PNT T+ D+ G+ K++ E+V++ ++ PE++ G + +GVL GPPG GKTLLAK
Sbjct: 478 PNT--TWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAK 535
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
AIA E F SI G E + M+ G + VRD+F KA+ APC++F DE+D++
Sbjct: 536 AIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGG 595
Query: 369 XXXXND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +P
Sbjct: 596 AGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLP 655
Query: 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
D R +ILK D+ L +A T GFSG
Sbjct: 656 DEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSG 691
>UNIPROTKB|P54811 [details] [associations]
symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
NextBio:884814 Uniprot:P54811
Length = 809
Score = 453 (164.5 bits), Expect = 7.2e-41, P = 7.2e-41
Identities = 105/274 (38%), Positives = 152/274 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E + +DD+ GV + E+VE L+ P+ F AIG + P+G+LL GPPGT
Sbjct: 196 KREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGT 255
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++ ++N P I+F+DEIDA+
Sbjct: 256 GKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAI 315
Query: 362 XXXXXXXXXXXNDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
N E E+ + +QLLT MDG +G + ++VIAATNR + +D AL R GRFDR
Sbjct: 316 APKREKT----NGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDR 371
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
++ + +PD GR EIL++H N K DV L+ IA GF G R
Sbjct: 372 EIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIRE 431
Query: 481 GKAAISSKE--ID-DSIDRIVAGMEGTVMTDGKS 511
I ++ ID + ++ + ME GKS
Sbjct: 432 KMELIDLEDDQIDAEVLNSLAVTMENFRFAQGKS 465
Score = 432 (157.1 bits), Expect = 3.8e-38, P = 3.8e-38
Identities = 87/216 (40%), Positives = 126/216 (58%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PNT T+ D+ G+ K++ E+V++ ++ PE++ G + +GVL GPPG GKTLLAK
Sbjct: 478 PNT--TWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAK 535
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
AIA E F SI G E + M+ G + VRD+F KA+ APC++F DE+D++
Sbjct: 536 AIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGG 595
Query: 369 XXXXND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +P
Sbjct: 596 AGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLP 655
Query: 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
D R +ILK D+ L +A T GFSG
Sbjct: 656 DEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSG 691
>UNIPROTKB|F1MG70 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
Length = 417
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 161 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 220
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 221 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 280
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 281 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 340
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 341 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 400
Query: 493 SIDRIV 498
+ ++
Sbjct: 401 AYKTVI 406
>UNIPROTKB|Q3T030 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
ArrayExpress:Q3T030 Uniprot:Q3T030
Length = 418
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 341
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 342 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401
Query: 493 SIDRIV 498
+ ++
Sbjct: 402 AYKTVI 407
>UNIPROTKB|E2RH48 [details] [associations]
symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
Length = 418
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 341
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 342 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401
Query: 493 SIDRIV 498
+ ++
Sbjct: 402 AYKTVI 407
>UNIPROTKB|P43686 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
"ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006521 "regulation of cellular amino acid metabolic process"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=TAS]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
Uniprot:P43686
Length = 418
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 341
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 342 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401
Query: 493 SIDRIV 498
+ ++
Sbjct: 402 AYKTVI 407
>UNIPROTKB|Q4R7L3 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
Length = 418
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 341
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 342 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401
Query: 493 SIDRIV 498
+ ++
Sbjct: 402 AYKTVI 407
>MGI|MGI:1346093 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
Uniprot:P54775
Length = 418
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 341
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 342 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401
Query: 493 SIDRIV 498
+ ++
Sbjct: 402 AYKTVI 407
>RGD|621102 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
"blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
GermOnline:ENSRNOG00000018994 Uniprot:Q63570
Length = 418
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 94/246 (38%), Positives = 133/246 (54%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V + D+ G+D KQ+ E VE L E + IG P+GVL+ GPPG GKT+LAKA+A
Sbjct: 162 VMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 221
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F + GSEFV+ ++G G VRD+F+ AKENAP I+F+DEIDA+
Sbjct: 222 HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 281
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LL +MDGF+ N + VI ATNRAD LD ALLRPGR DR++ +PD R +
Sbjct: 282 DREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 341
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDD 492
I S +V L+ R SG R + + +K+ +
Sbjct: 342 RLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401
Query: 493 SIDRIV 498
+ ++
Sbjct: 402 AYKTVI 407
>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
symbol:psmc1a "proteasome (prosome, macropain) 26S
subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
Length = 440
Score = 435 (158.2 bits), Expect = 7.4e-41, P = 7.4e-41
Identities = 91/252 (36%), Positives = 141/252 (55%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ D+ G+D Q+ E VE L PE + +G + PKGV+L G PGTGKTLLAKA+A +
Sbjct: 183 TYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 242
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F + GSE ++ ++G G VR+LF+ A+E+AP IVF+DEIDA+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF+ + VI ATNR + LD AL+RPGR DR++ +PD + +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 362
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
I ++H S DV+LD + + SG R + +++++ S
Sbjct: 363 RIFQIHTSRMTVADDVTLDDLILAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 494 IDRIV-AGMEGT 504
+ ++ EGT
Sbjct: 423 KENVLYKKQEGT 434
>UNIPROTKB|G3X757 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
Length = 806
Score = 451 (163.8 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 448 (162.8 bits), Expect = 3.5e-40, P = 3.5e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>UNIPROTKB|Q3ZBT1 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
Length = 806
Score = 451 (163.8 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 448 (162.8 bits), Expect = 3.5e-40, P = 3.5e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>UNIPROTKB|P55072 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISS] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
protein catabolic process" evidence=IMP;TAS] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
apoptotic process" evidence=TAS] [GO:0045184 "establishment of
protein localization" evidence=TAS] [GO:0019985 "translesion
synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IMP] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
Length = 806
Score = 451 (163.8 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 448 (162.8 bits), Expect = 3.5e-40, P = 3.5e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>MGI|MGI:99919 [details] [associations]
symbol:Vcp "valosin containing protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
"receptor binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
"cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISO] [GO:0031334 "positive regulation of protein complex
assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
evidence=ISO;IDA] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
binding" evidence=ISO] [GO:0045732 "positive regulation of protein
catabolic process" evidence=ISO] [GO:0051260 "protein
homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
Length = 806
Score = 451 (163.8 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 448 (162.8 bits), Expect = 3.5e-40, P = 3.5e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>RGD|621595 [details] [associations]
symbol:Vcp "valosin-containing protein" species:10116 "Rattus
norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0018279 "protein N-linked glycosylation via asparagine"
evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
"protein complex binding" evidence=IPI] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
"positive regulation of protein catabolic process" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
"aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
Uniprot:P46462
Length = 806
Score = 451 (163.8 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 448 (162.8 bits), Expect = 3.5e-40, P = 3.5e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>UNIPROTKB|E2RLQ9 [details] [associations]
symbol:VCP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
NextBio:20856352 Uniprot:E2RLQ9
Length = 822
Score = 451 (163.8 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 490 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 549
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 550 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 609
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 610 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 669
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 670 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 700
Score = 448 (162.8 bits), Expect = 3.8e-40, P = 3.8e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 206 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 265
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 266 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 325
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 326 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 382
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 383 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 441
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 442 KMDLIDLE-DETIDAEVMNSLAVTMDD 467
>WB|WBGene00004502 [details] [associations]
symbol:rpt-2 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
NextBio:903424 Uniprot:O16368
Length = 443
Score = 432 (157.1 bits), Expect = 1.7e-40, P = 1.7e-40
Identities = 93/258 (36%), Positives = 140/258 (54%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPG 300
S K + P T+ DV G+D+ Q+ E VE L PE + +G R PKGV+L G PG
Sbjct: 175 SVMKLEKAPQE--TYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPG 232
Query: 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360
TGKTLLAKA+A + F I GSE ++ ++G G VR+LF+ A+ENAP IVF+DEIDA
Sbjct: 233 TGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDA 292
Query: 361 VXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 420
V E ++T+ +LL ++DGF+ + V+ ATNR + LD AL+RPGR DR
Sbjct: 293 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDR 352
Query: 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRR 480
++ +PD + + I ++H S +V+L+ SG R
Sbjct: 353 KIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRE 412
Query: 481 GKAAISSKEIDDSIDRIV 498
+ ++ ++ S + ++
Sbjct: 413 RRMRVTMEDFQKSKENVL 430
>ZFIN|ZDB-GENE-030131-304 [details] [associations]
symbol:psmc6 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
Uniprot:Q6DRD2
Length = 389
Score = 432 (157.1 bits), Expect = 1.7e-40, P = 1.7e-40
Identities = 84/216 (38%), Positives = 132/216 (61%)
Query: 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLA 307
+P + V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA
Sbjct: 126 DPGS-VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLA 184
Query: 308 KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXX 367
+A+A + F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 185 RAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFS 244
Query: 368 XXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +++P
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIELP 304
Query: 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ + R +ILK+H D+ + I + GF+G
Sbjct: 305 NEQARLDILKIHSGPITKHGDIDYEAIVKLSDGFNG 340
>UNIPROTKB|F1NCS8 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
Uniprot:F1NCS8
Length = 403
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 144 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 204 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 264 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 324 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 354
>UNIPROTKB|Q5ZKX2 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
Uniprot:Q5ZKX2
Length = 389
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340
>UNIPROTKB|F1MLV1 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
Length = 389
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340
>UNIPROTKB|Q2KIW6 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
Length = 389
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340
>UNIPROTKB|J9P1N0 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
Uniprot:J9P1N0
Length = 395
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 136 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 195
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 196 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 255
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 256 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 315
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 316 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 346
>UNIPROTKB|P62333 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
Uniprot:P62333
Length = 389
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340
>UNIPROTKB|F1SFE6 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
ArrayExpress:F1SFE6 Uniprot:F1SFE6
Length = 403
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 144 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 204 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 264 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 324 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 354
>UNIPROTKB|P62335 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:43179 "Spermophilus tridecemlineatus" [GO:0022624
"proteasome accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
Length = 389
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340
>MGI|MGI:1914339 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
GermOnline:ENSMUSG00000021832 Uniprot:P62334
Length = 389
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 340
>RGD|1308825 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
Uniprot:Q32PW9
Length = 381
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 122 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 181
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 182 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 241
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 242 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 301
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 302 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 332
>RGD|2318218 [details] [associations]
symbol:LOC100365869 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
Length = 403
Score = 431 (156.8 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 83/211 (39%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V++ ++ G+ E ++ EV+E L PE F +G PKG LL GPPGTGKTLLA+A+A
Sbjct: 144 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
+ F + S V+ ++G A +R++F A+++ PCI+F+DEIDA+
Sbjct: 204 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LL +MDGF+ + +I ATNR D LD ALLRPGR DR++ +D+P+ + R
Sbjct: 264 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ILK+H ++ + I + GF+G
Sbjct: 324 LDILKIHAGPITKHGEIDYEAIVKLSDGFNG 354
>UNIPROTKB|P23787 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=ISS] [GO:0016567
"protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0035101 "FACT
complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
Length = 805
Score = 449 (163.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 86/211 (40%), Positives = 129/211 (61%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV +D +A T GFSG
Sbjct: 654 MAILKANLRKSPVAKDVDVDFLAKMTNGFSG 684
Score = 449 (163.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 104/267 (38%), Positives = 147/267 (55%)
Query: 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGT 301
K + + E V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 302 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 361
GKTL+A+A+A E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 362 XXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 421
ER + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+
Sbjct: 310 APKREKTHGEV--ER-RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 422 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRG 481
V + +PD GR EIL++H N K DV L+ +A T G G R+
Sbjct: 367 VDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 425
Query: 482 KAAISSKEIDDSIDRIVAGMEGTVMTD 508
K + E D++ID V M D
Sbjct: 426 KMDLIDLE-DETIDAEVMNSLAVTMDD 451
>TAIR|locus:2085064 [details] [associations]
symbol:CDC48 "cell division cycle 48" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
tube growth" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
Uniprot:P54609
Length = 809
Score = 449 (163.1 bits), Expect = 2.7e-40, P = 2.7e-40
Identities = 101/244 (41%), Positives = 142/244 (58%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DDV GV + E+VE L+ P+ F +IG + PKG+LL GPPG+GKTL+A+A+A
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DEID++
Sbjct: 264 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 319
Query: 373 NDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ + +QLLT MDG + +IV+ ATNR + +D AL R GRFDR++ + VPD G
Sbjct: 320 NGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIG 379
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R E+L++H N K DV L+ I+ T G+ G R K + E D
Sbjct: 380 RLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIRE-KMDVIDLE-D 437
Query: 492 DSID 495
DSID
Sbjct: 438 DSID 441
Score = 439 (159.6 bits), Expect = 5.1e-39, P = 5.1e-39
Identities = 89/216 (41%), Positives = 127/216 (58%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN V+++D+ G++ K++ E V++ ++ PE+F G KGVL GPPG GKTLLAK
Sbjct: 475 PN--VSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
AIA E F S+ G E + M+ G + VR++F KA+++APC++F DE+D++
Sbjct: 533 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGG 592
Query: 369 XXXXND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
++ LNQLLTEMDG + +I ATNR DI+DSALLRPGR D+ + + +P
Sbjct: 593 SGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLP 652
Query: 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
D R I K DV + +A T GFSG
Sbjct: 653 DEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSG 688
>TAIR|locus:2831844 [details] [associations]
symbol:AtCDC48C "cell division cycle 48C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
Uniprot:Q9LZF6
Length = 810
Score = 449 (163.1 bits), Expect = 2.7e-40, P = 2.7e-40
Identities = 101/244 (41%), Positives = 142/244 (58%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DDV GV + E+VE L+ P+ F +IG + PKG+LL GPPG+GKTL+A+A+A
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DEID++
Sbjct: 264 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 319
Query: 373 NDEREQTL-NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E E+ + +QLLT MDG + +IV+ ATNR + +D AL R GRFDR++ + VPD G
Sbjct: 320 NGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIG 379
Query: 432 RTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEID 491
R E+L++H N K DV L+ I+ T G+ G R K + E D
Sbjct: 380 RLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIRE-KMDVIDLE-D 437
Query: 492 DSID 495
DSID
Sbjct: 438 DSID 441
Score = 448 (162.8 bits), Expect = 3.6e-40, P = 3.6e-40
Identities = 89/215 (41%), Positives = 127/215 (59%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN V+++D+ G++ K++ E V++ ++ PE+F G KGVL GPPG GKTLLAK
Sbjct: 475 PN--VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
AIA E F S+ G E + M+ G + VR++F KA+++APC++F DE+D++
Sbjct: 533 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNS 592
Query: 369 XXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428
++ LNQLLTEMDG + +I ATNR DI+DSALLRPGR D+ + + +PD
Sbjct: 593 AGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPD 652
Query: 429 IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
R I K DV + +A T GFSG
Sbjct: 653 EDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSG 687
WARNING: HSPs involving 462 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 720 632 0.00092 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 712
No. of states in DFA: 601 (64 KB)
Total size of DFA: 264 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.14u 0.10s 51.24t Elapsed: 00:00:03
Total cpu time: 51.21u 0.11s 51.32t Elapsed: 00:00:03
Start: Mon May 20 18:04:52 2013 End: Mon May 20 18:04:55 2013
WARNINGS ISSUED: 2