BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005003
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/457 (52%), Positives = 313/457 (68%), Gaps = 11/457 (2%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI 310
N VTF DV G +EA ++ EVVEFLK P +F IGAR+PKG+LLVGPPGTGKTLLA+A+
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAV 69
Query: 311 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXX 370
AGEA VPFF ISGS+FVE+FVGVGA+RVRDLF +AK +APCIVF+DEIDAV
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 371 XXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
+DEREQTLNQLL EMDGF+ GIIV+AATNR DILD ALLRPGRFD+++ VD PD+
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
GR +IL++H NK DV+L++IA RTPGF G R G+ I+ K+
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 491 DDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARG 548
+++IDR++AG +++ K ++AYHE GHA+ T+ P +PV +++++PRG +A G
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALG 309
Query: 549 LTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMV 608
T +P +D L+S+ +L ++ LGGRAAEEV+FG +VT+GAA D+++ T +A+ MV
Sbjct: 310 YTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Query: 609 TTFGMS-EIGPWSLMDGSQS---GDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIAL 664
GMS E+GP + Q G I R+ RN SE++A ID VK++ YE A
Sbjct: 368 CQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYERAK 424
Query: 665 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 701
IR R+ +D IVE+LLEKET+ GDE R ILSE E
Sbjct: 425 EIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 461
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 237/457 (51%), Positives = 312/457 (68%), Gaps = 11/457 (2%)
Query: 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI 310
N VTF DV G +EA ++ EVVEFLK P +F IGAR+PKG+LLVGPPGTG TLLA+A+
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAV 69
Query: 311 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXX 370
AGEA VPFF ISGS+FVE+FVGVGA+RVRDLF +AK +APCIVF+DEIDAV
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 371 XXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 430
+DEREQTLNQLL EMDGF+ GIIV+AATNR DILD ALLRPGRFD+++ VD PD+
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189
Query: 431 GRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEI 490
GR +IL++H NK DV+L++IA RTPGF G R G+ I+ K+
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 491 DDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARG 548
+++IDR++AG +++ K ++AYHE GHA+ T+ P +PV +++++PRG +A G
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALG 309
Query: 549 LTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMV 608
T +P +D L+S+ +L ++ LGGRAAEEV+FG +VT+GAA D+++ T +A+ MV
Sbjct: 310 YTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Query: 609 TTFGMS-EIGPWSLMDGSQS---GDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIAL 664
GMS E+GP + Q G I R+ RN SE++A ID VK++ YE A
Sbjct: 368 CQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYERAK 424
Query: 665 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 701
IR R+ +D IVE+LLEKET+ GDE R ILSE E
Sbjct: 425 EIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 461
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/448 (48%), Positives = 298/448 (66%), Gaps = 14/448 (3%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF DVAG +EAK++ E+VEFLK P RF +GARIPKGVLLVGPPG GKT LA+A+AGE
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF + SGS+FVEMFVGVGA+RVRDLF+ AK +APCIVF+DEIDAV N
Sbjct: 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 147
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
DEREQTLNQLL EMDGFE +T I+V+AATNR DILD ALLRPGRFDRQ+ +D PD++GR
Sbjct: 148 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 207
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL++H K DV L ++A RTPGF G R G+ I+ K+++++
Sbjct: 208 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 267
Query: 494 IDRIVA-GMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
DR++ + +++ + + + AYHE GHA+ D V KVT+VPRG R L +
Sbjct: 268 ADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRG--RALGFM 325
Query: 553 IPSDDPTL-ISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTF 611
+P + L S+++L +I L GRAAEE++F +VTTGA D +Q T LA++M+T +
Sbjct: 326 MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMITEW 383
Query: 612 GMS-EIGP--WSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIR 668
GM E GP +++ + + G +R SE+ A+ ID AV+RL + Y+ + +
Sbjct: 384 GMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRVKALLL 438
Query: 669 NNREAIDKIVEVLLEKETMSGDEFRAIL 696
RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 439 EKREVLERVAETLLERETLTAEEFQRVV 466
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/448 (48%), Positives = 298/448 (66%), Gaps = 14/448 (3%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF DVAG +EAK++ E+VEFLK P RF +GARIPKGVLLVGPPG GKT LA+A+AGE
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF + SGS+FVEMFVGVGA+RVRDLF+ AK +APCIVF+DEIDAV N
Sbjct: 97 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 156
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
DEREQTLNQLL EMDGFE +T I+V+AATNR DILD ALLRPGRFDRQ+ +D PD++GR
Sbjct: 157 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL++H K DV L ++A RTPGF G R G+ I+ K+++++
Sbjct: 217 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276
Query: 494 IDRIVA-GMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552
DR++ + +++ + + + AYHE GHA+ D V KVT+VPRG R L +
Sbjct: 277 ADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRG--RALGFM 334
Query: 553 IPSDDPTL-ISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTF 611
+P + L S+++L +I L GRAAEE++F +VTTGA D +Q T LA++M+T +
Sbjct: 335 MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMITEW 392
Query: 612 GMS-EIGP--WSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIR 668
GM E GP +++ + + G +R SE+ A+ ID AV+RL + Y+ + +
Sbjct: 393 GMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRVKALLL 447
Query: 669 NNREAIDKIVEVLLEKETMSGDEFRAIL 696
RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 448 EKREVLERVAETLLERETLTAEEFQRVV 475
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 182/248 (73%)
Query: 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
TF DVAG DEAK++ E+VE+L++P RF +G +IPKGVL+VGPPGTGKTLLAKAIAGEA
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXND 374
VPFF+ISGS+FVEMFVGVGASRVRD+F++AK+ APCI+F+DEIDAV +D
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 375 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434
EREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDRQV V +PD+RGR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSI 494
ILKVH D+ +IA TPGFSG R K +S E + +
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 249
Query: 495 DRIVAGME 502
D+I+ G+E
Sbjct: 250 DKIMMGLE 257
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 282 bits (721), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 176/240 (73%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF DVAG +EAK++ E+VEFLK P RF +GARIPKGVLLVGPPG GKT LA+A+AGE
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF + SGS+FVEMFVGVGA+RVRDLF+ AK +APCIVF+DEIDAV N
Sbjct: 97 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 156
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
DEREQTLNQLL EMDGFE +T I+V+AATNR DILD ALLRPGRFDRQ+ +D PD++GR
Sbjct: 157 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL++H K DV L ++A RTPGF G R G+ I+ K+++++
Sbjct: 217 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 282 bits (721), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 176/240 (73%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
VTF DVAG +EAK++ E+VEFLK P RF +GARIPKGVLLVGPPG GKT LA+A+AGE
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
A VPF + SGS+FVEMFVGVGA+RVRDLF+ AK +APCIVF+DEIDAV N
Sbjct: 73 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 132
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
DEREQTLNQLL EMDGFE +T I+V+AATNR DILD ALLRPGRFDRQ+ +D PD++GR
Sbjct: 133 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL++H K DV L ++A RTPGF G R G+ I+ K+++++
Sbjct: 193 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 180/256 (70%), Gaps = 4/256 (1%)
Query: 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
+PN V F D+AG +EAK++ +E+V+FLK PER+ +GA+IPKGVLLVGPPGTGKTLLAK
Sbjct: 5 KPN--VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXX 367
A+AGEA VPFFS+ GS F+EMFVG+GASRVRDLF+ AK+ AP I+F+DEIDA+
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 368 XXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
NDEREQTLNQLL EMDGF N +IV+AATNR +ILD AL+RPGRFDRQV VD
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD GR EILKVH K DV+L +A T G +G GR + +
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 487 SKEIDDSIDRIVAGME 502
+ + ++++R +AG+E
Sbjct: 243 QQHLKEAVERGIAGLE 258
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 164/251 (65%), Gaps = 3/251 (1%)
Query: 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
GV+F DVAG+ EAK + E V++LK PERF +GA++PKG LL+GPPG GKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV-XXXXXXXXXX 371
EA VPF +++G+EFVE+ G+GA+RVR LFK+A+ APCIV++DEIDAV
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 372 XNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 431
N E EQTLNQLL EMDG +IV+A+TNRADILD AL+RPGR DR V +D+P ++
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 432 RTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKE 489
R EI + H + K + +A TPGFSG R G ++ +
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
Query: 490 IDDSIDRIVAG 500
+ +++R++AG
Sbjct: 242 FEYAVERVLAG 252
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 139/215 (64%), Gaps = 3/215 (1%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN V ++D+ G+++ Q+ EVVE LK PE F +G PKG+LL GPPGTGKTLLAK
Sbjct: 12 PN--VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
A+A E F + GSE V+ F+G GAS V+D+FK AKE AP I+F+DEIDA+
Sbjct: 70 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 369 XXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428
+ E ++TL QLL EMDGF+ + +I ATNR DILD A+LRPGRFDR + V PD
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 429 IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+GR EILK+H DV+L+ IA T G G
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 224
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 132/210 (62%), Gaps = 1/210 (0%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+D V G+ + ++ EV+E +K PE F ++G PKGV+L GPPGTGKTLLA+A+A
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F +SG+E V+ ++G G+ VR+LF A+E+AP I+F+DEID++ +
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGFE + I +I ATNR DILD ALLRPGR DR++ P + R
Sbjct: 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H ++L +A + G SG
Sbjct: 326 EILRIHSRKMNLTRGINLRKVAEKMNGCSG 355
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 1/211 (0%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
+TFD + G+ E ++ EV+E LK PE F +G + PKGVLL GPPGTGKTLLAKA+A
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
G F S V+ ++G A +R++F AKE+ PCI+F+DE+DA+
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++TL +LLT+MDGF+ +I ATNR D LD ALLRPGR DR+V + +P+ GR
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EI K+H + K + + + GF+G
Sbjct: 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNG 388
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 143/256 (55%), Gaps = 1/256 (0%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
+E VT+ DV G + + EVVE L PERF +G PKG+LL GPPGTGKTL
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
A+A+A F + GSE V+ +VG GA VR+LF+ A+ CI+F DEIDAV
Sbjct: 260 ARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARF 319
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426
++E ++T+ +L+T++DGF+ I V+ ATNR + LD ALLRPGR DR+V +
Sbjct: 320 DDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379
Query: 427 PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAIS 486
PD+ GR I ++H + + + ++I+ P +G R + +
Sbjct: 380 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 439
Query: 487 SKEIDDSIDRIVAGME 502
K+ ++D++++G +
Sbjct: 440 EKDFLKAVDKVISGYK 455
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 129/211 (61%), Gaps = 1/211 (0%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 132 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 192 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 129/211 (61%), Gaps = 1/211 (0%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGTGKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI---APKREKTH 317
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H N K DV L+ +A T G G
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 129/211 (61%), Gaps = 1/211 (0%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT++D+ G+++ K++ E+V++ ++ P++F G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E F SI G E + M+ G + VR++F KA++ APC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
++ +NQ+LTEMDG + +I ATNR DI+D A+LRPGR D+ + + +PD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
ILK + DV L+ +A T GFSG
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DDV G + E+VE L+ P F AIG + P+G+LL GPPGTGKTL+A+A+A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI---APKREKTH 317
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H N K DV L+ +A T G G
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 147/264 (55%), Gaps = 10/264 (3%)
Query: 255 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313
T+ DV G+D+ ++ +E + +K+ ++F +G R PKG L+ GPPGTGKTLLA+A A +
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238
Query: 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXN 373
F ++ + V+M++G GA VRD F AKE AP I+F+DE+DA+ +
Sbjct: 239 TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD 298
Query: 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 433
E ++T+ +LL ++DGF + + V+AATNR D+LD ALLR GR DR++ +P R
Sbjct: 299 REVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRA 358
Query: 434 EILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDS 493
+IL++H D D++ +A T F+G R G++++ ++ +
Sbjct: 359 QILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEG 418
Query: 494 IDRIVAGMEGTVMTDGKSKSLVAY 517
I + A KSKS+ Y
Sbjct: 419 ISEVQA---------RKSKSVSFY 433
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 140/225 (62%), Gaps = 21/225 (9%)
Query: 250 PNTGVTFDDVAGVDEAKQDF-MEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAK 308
PN VT+ D+ +++ +++ M ++ ++ P++F A+G P GVLL GPPG GKTLLAK
Sbjct: 5 PN--VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62
Query: 309 AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXX 368
A+A E+G+ F S+ G E + M+VG VR +F++AK +APC++F DE+DA+
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL------- 115
Query: 369 XXXXNDERE-----QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 423
+RE + +NQLLTEMDG E + ++AATNR DI+D A+LRPGR D+ +
Sbjct: 116 -CPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLF 174
Query: 424 VDVPDIRGRTEILKV---HGSNKKFDADVSLDVIA--MRTPGFSG 463
V +P R ILK +G+ DADV+L+ IA +R ++G
Sbjct: 175 VGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 219
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 129/214 (60%), Gaps = 6/214 (2%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
VT+ DV G+D KQ+ E VE L + + + IG P+GVLL GPPGTGKT+L KA+A
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
F ++GSEFV ++G G VRD+F+ A+ENAP I+F+DE+D++
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ E ++ L +LLT+MDGF+ +T + VI ATNRAD LD ALLRPGR DR+ ++ P +R R
Sbjct: 289 DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRK--IEFPSLRDR 346
Query: 433 TE---ILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
E I S + LD + +R SG
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDSLSG 380
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DDV G + E+VE L+ P F AIG + P+G+LL GPPGTGKTL+A+A+A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI---APKREKTH 317
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H N K DV L+ +A T G G
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGTGKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI---APKREKTH 317
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H N K DV L+ +A T G G
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGTGKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI---APKREKTH 317
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H N K DV L+ +A T G G
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 129/211 (61%), Gaps = 4/211 (1%)
Query: 254 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG 312
V +DD+ G + E+VE L+ P F AIG + P+G+LL GPPGTGKTL+A+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 313 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXX 372
E G FF I+G E + G S +R F++A++NAP I+F+DE+DA+
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI---APKREKTH 317
Query: 373 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGR 432
+ + ++QLLT MDG + +IV+AATNR + +D AL R GRFDR+V + +PD GR
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 433 TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
EIL++H N K DV L+ +A T G G
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVG 408
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 1/219 (0%)
Query: 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKT 304
+M+ + ++ D+ G++ Q+ E VE L PE + +G + PKGV+L G PGTGKT
Sbjct: 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 230
Query: 305 LLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXX 364
LLAKA+A + F I GSE ++ ++G G R +FK A ENAP IVF+DEIDA+
Sbjct: 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290
Query: 365 XXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 424
E ++T+ +LL ++DGF+ + VI ATN+ + LD AL+RPGR DR++
Sbjct: 291 RYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILF 350
Query: 425 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+ PD+ + +IL +H S DV+L+ + SG
Sbjct: 351 ENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSG 389
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 117/199 (58%), Gaps = 4/199 (2%)
Query: 503 GTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLI 561
G+ MT K K +A HE GHA+ G ++ D V K++++PRG A G+T +P +D +
Sbjct: 6 GSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIY 65
Query: 562 SKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWS 620
K+ L+ +I+ LGGRAAEEV FG+ +TTGA DLQ+ T LA +MV+ +GMS+ +GP +
Sbjct: 66 DKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIA 125
Query: 621 LMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEV 680
+ + + M S L +ID VKR+ YE A + + +E + +V+
Sbjct: 126 IR--RVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKK 183
Query: 681 LLEKETMSGDEFRAILSEF 699
LLEKET++ +EF + +
Sbjct: 184 LLEKETITCEEFVEVFKLY 202
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPPGTGKTLLA 307
PN V + DVAG++ AK+ E V +K P FT G R P +G+LL GPPGTGK+ LA
Sbjct: 129 PN--VKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLA 184
Query: 308 KAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
KA+A EA FFSIS S+ V ++G V++LF+ A+EN P I+F+DEID++
Sbjct: 185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CG 241
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++ + + L +M G N GI+V+ ATN +LDSA+ R RF++++ +
Sbjct: 242 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 299
Query: 426 VPDIRGRTEILKVH-GSNKKFDADVSLDVIAMRTPGFSG 463
+P+ R + ++H GS + + + +T G+SG
Sbjct: 300 LPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSG 338
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 14/219 (6%)
Query: 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPPGTGKTLLA 307
PN V + DVAG++ AK+ E V +K P FT G R P +G+LL GPPGTGK+ LA
Sbjct: 7 PN--VKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLA 62
Query: 308 KAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
KA+A EA FFSIS S+ V ++G V++LF+ A+EN P I+F+DEID++
Sbjct: 63 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CG 119
Query: 367 XXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++ + + L +M G N GI+V+ ATN +LDSA+ R RF++++ +
Sbjct: 120 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 177
Query: 426 VPDIRGRTEILKVH-GSNKKFDADVSLDVIAMRTPGFSG 463
+P+ R + K+H G+ + + + +T G+SG
Sbjct: 178 LPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG 216
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 106/181 (58%), Gaps = 11/181 (6%)
Query: 252 TGVTFDDVAGVDEAKQDFMEVVEFLK-KPERFTAIGARIP-KGVLLVGPPGTGKTLLAKA 309
T V FDD+AG D AKQ E+V +PE FT G R P +G+LL GPPG GKT+LAKA
Sbjct: 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFT--GLRAPARGLLLFGPPGNGKTMLAKA 167
Query: 310 IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXX 369
+A E+ FF+IS + +VG G VR LF A+E P I+F+D++D++
Sbjct: 168 VAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL---LCERR 224
Query: 370 XXXNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427
+D + + L E DG + G+ ++V+ ATNR LD A+LR RF ++V V +P
Sbjct: 225 EGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLP 282
Query: 428 D 428
+
Sbjct: 283 N 283
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 13/226 (5%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPP 299
S A +PN V ++DVAG++ AK+ E V +K P F G R P G+LL GPP
Sbjct: 38 SSAILSEKPN--VKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 93
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGK+ LAKA+A EA FFS+S S+ V ++G V+ LF A+EN P I+F+D++D
Sbjct: 94 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 153
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDSALLRPGRF 418
A+ ++ + +LL +M+G ++ G++V+ ATN LDSA+ R RF
Sbjct: 154 AL---TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RF 208
Query: 419 DRQVTVDVPDIRGRTEILKVH-GSNKKFDADVSLDVIAMRTPGFSG 463
+R++ + +PD+ RT + +++ G + T G+SG
Sbjct: 209 ERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSG 254
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 12/194 (6%)
Query: 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPPGTGKTLL 306
+PN V ++DVAG++ AK+ E V +K P F G R P G+LL GPPGTGK+ L
Sbjct: 21 KPN--VKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYL 76
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
AKA+A EA FFS+S S+ V ++G V+ LF A+EN P I+F+DE+DA+
Sbjct: 77 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL---TG 133
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++ + +LL +M+G ++ G++V+ ATN LDSA+ R RF+R++ +
Sbjct: 134 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 191
Query: 426 VPDIRGRTEILKVH 439
+PD+ RT + +++
Sbjct: 192 LPDLAARTTMFEIN 205
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLK-KPERFTAIGARIP-KGVLLVGPPGTGKTL 305
+E V + D+AG D AKQ E+V +PE FT G R P KG+LL GPPG GKTL
Sbjct: 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTL 69
Query: 306 LAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXX 365
LA+A+A E F +IS + +VG G VR LF A+ P I+F+DE+D++
Sbjct: 70 LARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSL---L 126
Query: 366 XXXXXXXNDEREQTLNQLLTEMDGFEGNTG---IIVIAATNRADILDSALLRPGRFDRQV 422
++ + + L E DG GN I+V+AATNR LD A LR RF ++V
Sbjct: 127 SERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRV 184
Query: 423 TVDVPDIRGR----TEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463
V +PD + R +L+ GS +A L +A T G+SG
Sbjct: 185 YVSLPDEQTRELLLNRLLQKQGSPLDTEA---LRRLAKITDGYSG 226
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPP 299
S A +PN V ++DVAG++ AK+ E V +K P F G R P G+LL GPP
Sbjct: 23 SSAILSEKPN--VKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 78
Query: 300 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID 359
GTGK+ LAKA+A EA FFS+S S+ V ++G V+ LF A+EN P I+F+D++D
Sbjct: 79 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 138
Query: 360 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDSALLRPGRF 418
A+ ++ + +LL +M+G ++ G++V+ ATN LDSA+ R RF
Sbjct: 139 AL---TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RF 193
Query: 419 DRQVTVDVPDIRGRTEILKVH 439
+R++ + +PD+ RT + +++
Sbjct: 194 ERRIYIPLPDLAARTTMFEIN 214
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 12/194 (6%)
Query: 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPPGTGKTLL 306
+PN V ++DVAG++ AK+ E V +K P F G R P G+LL GPPGTGK+ L
Sbjct: 12 KPN--VKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYL 67
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
AKA+A EA FFS+S S+ V ++G V+ LF A+EN P I+F+D++DA+
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL---TG 124
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDSALLRPGRFDRQVTVD 425
++ + +LL +M+G ++ G++V+ ATN LDSA+ R RF+R++ +
Sbjct: 125 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 426 VPDIRGRTEILKVH 439
+PD+ RT + +++
Sbjct: 183 LPDLAARTTMFEIN 196
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 120/220 (54%), Gaps = 10/220 (4%)
Query: 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLL 306
M+ V ++D+AGV+ AK E+V + + +P+ FT + PKG+LL GPPGTGKTL+
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLI 133
Query: 307 AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXX 366
K IA ++G FFSIS S +VG G VR LF A+ P ++F+DEID++
Sbjct: 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL---LS 190
Query: 367 XXXXXXNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLRPGRFDRQVTV 424
++ + + L ++DG ++ I+V+ ATNR +D A R R +++ +
Sbjct: 191 QRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYI 248
Query: 425 DVPDIRGRTEI-LKVHGSNKKFDADVSLDVIAMRTPGFSG 463
+P+ R +I + + + ++ ++ I ++ FSG
Sbjct: 249 PLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSG 288
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGA-SRVRDLFKKA-- 345
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 346 -----KENAPCIVFVDEIDAV 361
++N IVF+DEID +
Sbjct: 110 AIDAVEQNG--IVFIDEIDKI 128
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGA-SRVRDLFKKA 345
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGA-SRVRDLFKKA 345
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGA-SRVRDLFKKA 345
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL A
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGA-SRVRDL 341
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 325
+ VLL GPPGTGKT LA AIA E G VPF + GSE
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGA-SRVRDLFKKA 345
PK +L +GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE 325
+ VLL GPPGTGKT LA AIA E G VPF GSE
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSE 114
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 19/91 (20%)
Query: 280 ERFTAIGARIPKGV--------LLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331
+ A G +P+ + +L GPPGTGKT LA+ IA A IS V
Sbjct: 32 QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISA-------V 84
Query: 332 GVGASRVRDLFKKAKENAPC----IVFVDEI 358
G +R+ ++A++N I+FVDE+
Sbjct: 85 TSGVKEIREAIERARQNRNAGRRTILFVDEV 115
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKAKENAP 350
+LL+GP G+GKTLLA+ +A VPF + E +VG ++ L +K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 351 ----CIVFVDEIDAV 361
IV++D+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASR-VRDLFKKAKENAP 350
+LL+GP G+GKTLLA+ +A VPF + E +VG ++ L +K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 351 ----CIVFVDEIDAV 361
IV++D+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR-VRDLFKKAKENAPC 351
VLL GPP +GKT LA IA E+ PF I + + F + ++ +F A ++
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 125
Query: 352 IVFVDEID 359
V VD+I+
Sbjct: 126 CVVVDDIE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR-VRDLFKKAKENAPC 351
VLL GPP +GKT LA IA E+ PF I + + F + ++ +F A ++
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 126
Query: 352 IVFVDEID 359
V VD+I+
Sbjct: 127 CVVVDDIE 134
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKA----- 345
+LL+GP G+GKTL+A+ +A +P + E +VG + +A
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 346 KENAPCIVFVDEIDAV 361
++ IVF+DEID +
Sbjct: 134 QKAQKGIVFIDEIDKI 149
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS------GSEF---VEMFVGVGASRVRDLFK 343
+ L GPPG GKT LAK+IA G F IS SE +VG R+ K
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 344 KAKENAPCIVFVDEID 359
KA + P + +DEID
Sbjct: 171 KAGKLNP-VFLLDEID 185
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 31/119 (26%)
Query: 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
T D+V G DE Q VE P +L GPPGTGKT A A+A +
Sbjct: 15 TLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARD- 61
Query: 315 GVPFFSISGSEFVEMFVGVGASR------VRDLFKKAKENAPC------IVFVDEIDAV 361
+ G + + F+ + AS VR K+ AP I+F+DE DA+
Sbjct: 62 ------LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 31/119 (26%)
Query: 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
T D+V G DE Q VE P +L GPPGTGKT A A+A +
Sbjct: 15 TLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARD- 61
Query: 315 GVPFFSISGSEFVEMFVGVGASR------VRDLFKKAKENAPC------IVFVDEIDAV 361
+ G + + F+ + AS VR K+ AP I+F+DE DA+
Sbjct: 62 ------LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 255 TFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA 311
T D+ G + KQ ++E + K+P + +LL GPPG GKT LA IA
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPL----------EHLLLFGPPGLGKTTLAHVIA 59
Query: 312 GEAGVPFFSISG 323
E GV SG
Sbjct: 60 HELGVNLRVTSG 71
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 255 TFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA 311
T D+ G + KQ ++E + K+P + +LL GPPG GKT LA IA
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPL----------EHLLLFGPPGLGKTTLAHVIA 59
Query: 312 GEAGVPFFSISGS 324
E GV SG
Sbjct: 60 HELGVNLRVTSGP 72
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 329
+ VL+ G PGTGKT +A +A G PF +I+GSE +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 255 TFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA 311
T D+ G + KQ ++E + K+P + +LL GPPG GKT LA IA
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPL----------EHLLLFGPPGLGKTTLAHVIA 59
Query: 312 GEAGVPFFSISGS 324
E GV SG
Sbjct: 60 HELGVNLRVTSGP 72
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFV----GVGASRVRDLFKK 344
+ VL+ G PGTGKT +A A G PF +I+GSE + + + R + +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 345 AKENAPCIVF---VDEIDAV 361
KE P +V + EID +
Sbjct: 146 IKEGPPGVVHTVSLHEIDVI 165
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328
VLL GPPG GKT LA IA E SG V+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328
VLL GPPG GKT LA IA E SG V+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328
VLL GPPG GKT LA IA E SG V+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328
VLL GPPG GKT LA IA E SG V+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 19/36 (52%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328
VLL GPPG GKT LA IA E SG V+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321
+LL G PG GKT L K +A ++G+ + ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 280 ERFTAIGAR--IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331
E F +I ++ IP +L PGTGKT +AKA+ + ++GS+ FV
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR------VRDLFKKAK 346
+L GPPG GKT A A+A E + G + F+ + AS +R+ K+
Sbjct: 49 LLFAGPPGVGKTTAALALARE-------LFGENWRHNFLELNASDERGINVIREKVKEFA 101
Query: 347 ENAPC------IVFVDEIDAV 361
P I+F+DE DA+
Sbjct: 102 RTKPIGGASFKIIFLDEADAL 122
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321
+LL G PG GKT L K +A ++G+ + ++
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328
VLL GPPG G+T LA IA E SG V+
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 50/124 (40%), Gaps = 32/124 (25%)
Query: 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 315
D+V D A V LKK T A +P +L GPPGTGKT A+ E
Sbjct: 36 LDEVTAQDHA-------VTVLKK----TLKSANLPH-MLFYGPPGTGKTSTILALTKELY 83
Query: 316 VPFFSISGSEFVEMFVG--VGASRVRDLFKKAK------------ENAPC----IVFVDE 357
P + S +E+ G S VR+ K EN PC I+ +DE
Sbjct: 84 GP--DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE 141
Query: 358 IDAV 361
D++
Sbjct: 142 ADSM 145
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 289 IPKG----VLLVGPPGTGKTLLAKAIAGEAGVPFFS 320
+P+G VLL+GPPG GK A +A + G+P S
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 260 AGVDEAKQDFMEVVEFLKKPERFTAIGARIP-----KGVLLVGPPGTGKTLLAKAIAGEA 314
+G+D D E+ E + T +P K ++GP G T L +A A
Sbjct: 93 SGIDPTNHDSGELDELARAWHVLTPWPDSVPGLTAIKAEYIIGPLSNGNTSLLLDMAKNA 152
Query: 315 GVPFFSISGSEF 326
G+P+ I GS+
Sbjct: 153 GIPWDVIIGSDI 164
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 290 PKGV--LLVGPPGTGKTLLAKAIAGE 313
PKG+ L+ G PGTGKT +A+ IA E
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/78 (16%), Positives = 34/78 (43%)
Query: 425 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAA 484
+PD+ GR I ++H + + + ++I+ P +G R +
Sbjct: 6 SLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKV 65
Query: 485 ISSKEIDDSIDRIVAGME 502
+ K+ ++D++++G +
Sbjct: 66 ATEKDFLKAVDKVISGYK 83
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325
G+ + + +L GPPG GKT A +A E G + S+
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314
T D+V G +E + V+ K P +L GPPGTGKT A+A E
Sbjct: 23 TLDEVYGQNEVITTVRKFVDEGKLPH------------LLFYGPPGTGKTSTIVALARE- 69
Query: 315 GVPFFSISGSEFVEMFVGVGAS 336
I G + M + + AS
Sbjct: 70 ------IYGKNYSNMVLELNAS 85
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVP 317
+LL G PG+GK+ +A+A+A GVP
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVP 36
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGAS 336
G + P +++ G P TGKT L++A+A +P +S F E+ F G+G S
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGLRLPL--LSKDAFKEVXFDGLGWS 50
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 291 KGVLLVGPPGTGKTLLAKAIA 311
+ VLL+G PGTGK++L +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 320
VLL+GPPG GK A +A + G+P S
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIS 30
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 295 LVGPPGTGKTLLAKAIAG---EAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKAKE 347
G PGTGKT +A +AG G S++ + V ++G A + +++ K+A
Sbjct: 72 FTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-- 129
Query: 348 NAPCIVFVDE 357
++F+DE
Sbjct: 130 -MGGVLFIDE 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 295 LVGPPGTGKTLLAKAIAG---EAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKAKE 347
G PGTGKT +A +AG G S++ + V ++G A + +++ K+A
Sbjct: 65 FTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-- 122
Query: 348 NAPCIVFVDE 357
++F+DE
Sbjct: 123 -MGGVLFIDE 131
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE 347
++ +GPPG GK AK +A E G F IS + + V G L KKAKE
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTP----LGKKAKE 51
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 295 LVGPPGTGKTLLAKAIAG---EAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKAKE 347
G PGTGKT +A AG G S++ + V ++G A + +++ K+A
Sbjct: 72 FTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-- 129
Query: 348 NAPCIVFVDE 357
++F+DE
Sbjct: 130 -XGGVLFIDE 138
>pdb|2BA0|F Chain F, Archaeal Exosome Core
pdb|2BA0|E Chain E, Archaeal Exosome Core
pdb|2BA0|D Chain D, Archaeal Exosome Core
pdb|2BA1|D Chain D, Archaeal Exosome Core
pdb|2BA1|E Chain E, Archaeal Exosome Core
pdb|2BA1|F Chain F, Archaeal Exosome Core
Length = 258
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 570 IVGGL--GGRAAEEV--IFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGS 625
IV GL GR +E+ I E V A G G K + FG E+ P L D S
Sbjct: 12 IVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPS 71
Query: 626 QSGDVIMRMMARNSMSEKLAEDID---AAVKRLSDRAYEIALSQIRNNREAIDKIVEVL 681
++ MA S+ E+ D + ++S A+E + + R AID VEVL
Sbjct: 72 KAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 276 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIA----GEAGVPFFSISGSEFVEMFV 331
LK P+R IG+ I +GP G GKT LA+A+A G+ I SE++E
Sbjct: 514 LKDPKR--PIGSFI-----FLGPTGVGKTELARALAESIFGDEE-SMIRIDMSEYMEKHS 565
Query: 332 GVGASRVRDLFKKAKENAPCIVFVDEID 359
G L +K + +V +D I+
Sbjct: 566 TSGGQ----LTEKVRRKPYSVVLLDAIE 589
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 298 PPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLFK 343
PPGT + L+A+A+A EAG FS+ S EF+ S + D FK
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFLRE-----GSALEDFFK 188
>pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 570 IVGGL--GGRAAEEV--IFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGS 625
IV GL GR +E+ I E V A G G K + FG E+ P L D S
Sbjct: 12 IVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPS 71
Query: 626 QSGDVIMRMMARNSMSEKLAEDID---AAVKRLSDRAYEIALSQIRNNREAIDKIVEVL 681
++ MA S+ E+ D + ++S A+E + + R AID VEVL
Sbjct: 72 KAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVL 130
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF--------SISGSEFVEMFVGVGASRVRD 340
+ + LVG G+GKT + K +A G FF ++ G+ E+F G S R+
Sbjct: 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFRE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,596,868
Number of Sequences: 62578
Number of extensions: 688431
Number of successful extensions: 2359
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2224
Number of HSP's gapped (non-prelim): 102
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)