Query 005003
Match_columns 720
No_of_seqs 668 out of 3908
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 16:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 3E-112 6E-117 956.8 52.8 587 92-700 2-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 2E-108 4E-113 888.5 38.6 442 246-700 293-736 (752)
3 CHL00176 ftsH cell division pr 100.0 7E-102 2E-106 894.4 60.4 584 117-704 47-631 (638)
4 KOG0731 AAA+-type ATPase conta 100.0 1E-100 2E-105 875.0 51.0 576 119-704 163-754 (774)
5 PRK10733 hflB ATP-dependent me 100.0 2.2E-93 4.7E-98 830.8 63.0 596 88-704 3-601 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.1E-83 2.5E-88 731.3 49.7 490 199-697 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3.4E-62 7.4E-67 513.1 18.5 260 243-502 137-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-55 2.8E-60 531.9 30.2 308 281-615 1621-1983(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 5.4E-50 1.2E-54 446.8 24.7 249 249-500 426-677 (693)
10 KOG0727 26S proteasome regulat 100.0 1.3E-48 2.8E-53 392.6 24.2 324 168-500 75-399 (408)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-47 4E-52 420.5 24.3 247 251-500 505-772 (802)
12 KOG0726 26S proteasome regulat 100.0 1.6E-48 3.6E-53 398.3 14.0 320 173-501 110-430 (440)
13 KOG0729 26S proteasome regulat 100.0 5.4E-47 1.2E-51 383.3 19.7 267 238-504 158-425 (435)
14 KOG0728 26S proteasome regulat 100.0 4E-47 8.7E-52 381.4 17.6 258 246-503 136-394 (404)
15 KOG0652 26S proteasome regulat 100.0 1.6E-46 3.5E-51 378.8 19.3 257 244-500 158-415 (424)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 4.9E-45 1.1E-49 401.5 20.9 228 250-480 183-414 (802)
17 PTZ00454 26S protease regulato 100.0 4.1E-42 8.8E-47 379.4 28.3 254 247-500 135-389 (398)
18 PF01434 Peptidase_M41: Peptid 100.0 2.3E-43 5.1E-48 359.5 16.6 210 486-695 1-213 (213)
19 COG1223 Predicted ATPase (AAA+ 100.0 8.6E-43 1.9E-47 352.2 20.2 242 249-497 113-355 (368)
20 KOG0736 Peroxisome assembly fa 100.0 4.3E-42 9.3E-47 386.2 23.3 249 250-500 665-935 (953)
21 KOG0738 AAA+-type ATPase [Post 100.0 4.8E-42 1E-46 362.7 21.5 246 249-499 204-471 (491)
22 PRK03992 proteasome-activating 100.0 1.1E-40 2.3E-45 368.6 28.2 258 247-504 121-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 7.8E-42 1.7E-46 379.8 17.1 254 247-500 173-427 (438)
24 KOG0651 26S proteasome regulat 100.0 2.8E-40 6.1E-45 341.3 13.4 251 248-498 123-374 (388)
25 KOG0735 AAA+-type ATPase [Post 100.0 8.8E-39 1.9E-43 356.5 22.4 228 250-480 660-888 (952)
26 TIGR01242 26Sp45 26S proteasom 100.0 4.4E-38 9.6E-43 345.0 27.2 252 246-497 111-363 (364)
27 COG0464 SpoVK ATPases of the A 100.0 1.6E-38 3.4E-43 361.7 24.2 245 250-497 235-483 (494)
28 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-38 6.8E-43 374.6 26.1 247 251-499 447-712 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-37 3E-42 350.4 25.2 243 251-500 222-466 (489)
30 KOG0739 AAA+-type ATPase [Post 100.0 2.6E-38 5.7E-43 324.5 13.8 227 248-480 124-353 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 2.2E-36 4.8E-41 320.1 20.5 225 251-480 86-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 1E-34 2.2E-39 327.1 24.6 255 246-502 171-483 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-33 2.9E-38 315.8 19.3 279 252-544 180-469 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 4.5E-33 9.9E-38 302.9 16.1 280 249-529 211-531 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-31 3.2E-36 317.7 29.0 248 251-501 172-439 (733)
36 PLN00020 ribulose bisphosphate 100.0 1.9E-31 4.1E-36 285.4 24.9 261 252-526 110-393 (413)
37 KOG0732 AAA+-type ATPase conta 100.0 2E-31 4.4E-36 312.9 18.8 252 250-504 258-532 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 8.2E-30 1.8E-34 278.7 16.2 226 250-481 146-375 (428)
39 KOG0743 AAA+-type ATPase [Post 99.9 1.1E-21 2.3E-26 213.8 16.9 207 254-469 198-412 (457)
40 CHL00181 cbbX CbbX; Provisiona 99.9 6.4E-21 1.4E-25 203.0 20.4 213 256-480 22-257 (287)
41 TIGR02880 cbbX_cfxQ probable R 99.9 8.3E-21 1.8E-25 201.9 20.3 212 257-480 22-256 (284)
42 TIGR02881 spore_V_K stage V sp 99.9 1.3E-20 2.9E-25 197.9 20.8 213 255-480 4-241 (261)
43 PF00004 AAA: ATPase family as 99.9 3.3E-21 7.1E-26 178.9 13.8 130 293-426 1-132 (132)
44 KOG0742 AAA+-type ATPase [Post 99.8 4E-20 8.8E-25 197.3 18.7 210 252-472 350-587 (630)
45 PF05496 RuvB_N: Holliday junc 99.8 1.7E-18 3.7E-23 175.7 17.3 193 250-474 17-226 (233)
46 KOG0736 Peroxisome assembly fa 99.8 5.3E-18 1.1E-22 192.7 22.5 209 286-500 427-656 (953)
47 PRK00080 ruvB Holliday junctio 99.8 4.7E-18 1E-22 184.3 20.8 220 249-497 17-250 (328)
48 COG0464 SpoVK ATPases of the A 99.8 1.3E-17 2.8E-22 190.3 24.8 220 276-500 4-229 (494)
49 TIGR00635 ruvB Holliday juncti 99.8 8E-18 1.7E-22 180.0 19.9 210 255-496 2-228 (305)
50 KOG0735 AAA+-type ATPase [Post 99.8 1.7E-17 3.7E-22 187.0 22.3 262 257-529 408-684 (952)
51 TIGR02902 spore_lonB ATP-depen 99.8 7E-18 1.5E-22 193.7 18.6 256 207-496 8-331 (531)
52 KOG0744 AAA+-type ATPase [Post 99.8 3.4E-18 7.4E-23 178.7 14.0 237 256-496 141-413 (423)
53 TIGR02639 ClpA ATP-dependent C 99.8 7.1E-18 1.5E-22 200.7 17.2 226 252-501 177-433 (731)
54 COG2255 RuvB Holliday junction 99.7 4.4E-17 9.4E-22 168.5 18.3 216 251-498 20-252 (332)
55 TIGR00763 lon ATP-dependent pr 99.7 4.8E-17 1E-21 194.7 20.9 164 257-440 320-505 (775)
56 PRK11034 clpA ATP-dependent Cl 99.7 3.4E-17 7.4E-22 193.8 17.4 225 253-501 182-437 (758)
57 COG2256 MGS1 ATPase related to 99.7 1.7E-16 3.7E-21 170.9 17.6 203 251-499 18-240 (436)
58 PRK00149 dnaA chromosomal repl 99.7 1.7E-16 3.6E-21 179.3 16.2 296 251-588 116-426 (450)
59 KOG2004 Mitochondrial ATP-depe 99.7 1.1E-16 2.5E-21 180.8 13.7 178 245-442 399-598 (906)
60 TIGR00362 DnaA chromosomal rep 99.7 2E-15 4.4E-20 168.3 22.2 242 251-528 104-358 (405)
61 PRK04195 replication factor C 99.7 1.3E-15 2.9E-20 173.4 19.7 212 246-494 3-222 (482)
62 PRK14962 DNA polymerase III su 99.7 1.7E-15 3.6E-20 171.5 19.8 207 249-496 6-241 (472)
63 PRK14956 DNA polymerase III su 99.7 1.8E-15 3.8E-20 169.6 19.4 207 247-494 8-243 (484)
64 TIGR02928 orc1/cdc6 family rep 99.7 4.9E-15 1.1E-19 162.2 22.6 221 254-497 12-274 (365)
65 PRK07003 DNA polymerase III su 99.7 2.1E-15 4.4E-20 174.9 20.1 204 248-492 7-239 (830)
66 PRK14088 dnaA chromosomal repl 99.7 3.4E-15 7.4E-20 168.1 21.1 244 251-528 99-355 (440)
67 PRK13342 recombination factor 99.7 2.6E-15 5.7E-20 167.9 19.1 203 249-498 4-220 (413)
68 PRK12402 replication factor C 99.7 7E-15 1.5E-19 158.9 21.0 213 246-495 4-247 (337)
69 PRK06645 DNA polymerase III su 99.6 4.8E-15 1E-19 168.6 20.1 217 247-495 11-254 (507)
70 PRK12323 DNA polymerase III su 99.6 2.1E-15 4.6E-20 172.8 16.5 211 248-493 7-245 (700)
71 PRK14961 DNA polymerase III su 99.6 6.5E-15 1.4E-19 162.1 19.7 213 248-495 7-242 (363)
72 PRK14960 DNA polymerase III su 99.6 4.9E-15 1.1E-19 170.3 19.1 206 249-495 7-241 (702)
73 PRK14958 DNA polymerase III su 99.6 5.8E-15 1.3E-19 168.6 18.6 207 247-494 6-241 (509)
74 TIGR03345 VI_ClpV1 type VI sec 99.6 6.8E-15 1.5E-19 177.1 20.0 217 252-493 182-427 (852)
75 PRK00411 cdc6 cell division co 99.6 1.9E-14 4.1E-19 159.3 22.1 222 254-497 27-282 (394)
76 PHA02544 44 clamp loader, smal 99.6 6E-15 1.3E-19 158.6 17.6 209 244-492 8-226 (316)
77 PLN03025 replication factor C 99.6 8.5E-15 1.9E-19 158.3 18.6 204 247-493 3-219 (319)
78 PRK14086 dnaA chromosomal repl 99.6 1.2E-14 2.7E-19 166.8 19.9 245 251-528 282-537 (617)
79 PRK06893 DNA replication initi 99.6 2.9E-14 6.4E-19 147.2 20.3 212 249-494 8-227 (229)
80 COG0466 Lon ATP-dependent Lon 99.6 2.7E-15 5.9E-20 170.8 13.5 178 244-441 310-509 (782)
81 TIGR03420 DnaA_homol_Hda DnaA 99.6 2.7E-14 5.8E-19 145.8 18.8 206 251-494 9-225 (226)
82 PRK14964 DNA polymerase III su 99.6 2.2E-14 4.7E-19 162.3 19.0 204 250-494 6-238 (491)
83 PRK10865 protein disaggregatio 99.6 1.5E-14 3.3E-19 174.5 18.6 201 252-477 173-401 (857)
84 PRK07994 DNA polymerase III su 99.6 2.4E-14 5.3E-19 166.2 19.4 205 249-494 8-241 (647)
85 PRK14949 DNA polymerase III su 99.6 3E-14 6.4E-19 168.1 19.9 208 249-491 8-238 (944)
86 PRK08691 DNA polymerase III su 99.6 1.9E-14 4.1E-19 166.7 17.9 213 248-495 7-242 (709)
87 CHL00095 clpC Clp protease ATP 99.6 1.5E-14 3.2E-19 174.5 17.4 163 252-439 174-353 (821)
88 PRK14963 DNA polymerase III su 99.6 4.1E-14 8.8E-19 161.4 19.7 204 249-494 6-237 (504)
89 PRK14087 dnaA chromosomal repl 99.6 1.5E-14 3.3E-19 163.2 15.6 297 253-591 111-428 (450)
90 PRK05563 DNA polymerase III su 99.6 4.6E-14 9.9E-19 163.2 19.8 205 249-494 8-241 (559)
91 PRK08903 DnaA regulatory inact 99.6 6.5E-14 1.4E-18 143.8 18.8 204 249-495 10-224 (227)
92 PRK14951 DNA polymerase III su 99.6 4.2E-14 9.1E-19 163.9 19.4 213 247-494 6-246 (618)
93 TIGR02397 dnaX_nterm DNA polym 99.6 5E-14 1.1E-18 153.6 18.9 208 247-495 4-240 (355)
94 PRK12422 chromosomal replicati 99.6 6E-14 1.3E-18 158.0 19.6 228 251-498 105-344 (445)
95 PRK07940 DNA polymerase III su 99.6 5.5E-14 1.2E-18 155.8 18.3 185 255-469 3-214 (394)
96 PRK14969 DNA polymerase III su 99.6 5.4E-14 1.2E-18 161.5 18.2 211 249-494 8-241 (527)
97 KOG2028 ATPase related to the 99.6 3.5E-14 7.5E-19 150.7 15.2 209 250-496 131-367 (554)
98 TIGR03346 chaperone_ClpB ATP-d 99.6 4.8E-14 1E-18 170.6 18.3 202 252-478 168-397 (852)
99 PRK05342 clpX ATP-dependent pr 99.6 9.1E-14 2E-18 154.9 19.1 179 256-437 69-322 (412)
100 PRK13341 recombination factor 99.6 8.3E-14 1.8E-18 164.5 19.5 212 248-497 19-247 (725)
101 PRK14952 DNA polymerase III su 99.5 1.1E-13 2.4E-18 159.8 18.9 206 249-494 5-241 (584)
102 PRK14959 DNA polymerase III su 99.5 9E-14 2E-18 160.3 18.0 206 248-494 7-241 (624)
103 PRK08084 DNA replication initi 99.5 3.5E-13 7.6E-18 139.8 20.7 207 250-494 15-233 (235)
104 PRK14957 DNA polymerase III su 99.5 1.3E-13 2.7E-18 158.1 19.0 204 249-493 8-240 (546)
105 PRK07764 DNA polymerase III su 99.5 1.2E-13 2.5E-18 165.1 18.5 213 248-494 6-243 (824)
106 TIGR02640 gas_vesic_GvpN gas v 99.5 3.5E-13 7.6E-18 142.0 19.9 187 292-499 23-259 (262)
107 PRK07133 DNA polymerase III su 99.5 1.6E-13 3.5E-18 160.3 19.1 213 247-494 8-240 (725)
108 PRK14965 DNA polymerase III su 99.5 1.6E-13 3.4E-18 159.4 18.3 204 249-493 8-240 (576)
109 PRK08727 hypothetical protein; 99.5 4.4E-13 9.6E-18 138.8 19.7 210 250-496 12-230 (233)
110 PRK14970 DNA polymerase III su 99.5 1.9E-13 4.2E-18 150.4 17.9 214 247-495 7-231 (367)
111 PRK05896 DNA polymerase III su 99.5 1.8E-13 3.8E-18 157.3 18.0 207 247-494 6-241 (605)
112 PRK10787 DNA-binding ATP-depen 99.5 1.2E-13 2.5E-18 165.0 16.8 165 256-441 321-507 (784)
113 PRK09111 DNA polymerase III su 99.5 3E-13 6.4E-18 156.9 19.6 214 247-495 14-255 (598)
114 PRK00440 rfc replication facto 99.5 5.3E-13 1.1E-17 143.0 20.2 208 245-495 5-224 (319)
115 PRK13407 bchI magnesium chelat 99.5 1.3E-13 2.9E-18 149.5 15.4 218 252-498 3-307 (334)
116 PRK14953 DNA polymerase III su 99.5 3.4E-13 7.4E-18 153.4 19.4 212 248-494 7-241 (486)
117 PF00308 Bac_DnaA: Bacterial d 99.5 2.4E-13 5.2E-18 139.6 16.4 203 251-477 2-216 (219)
118 PRK08451 DNA polymerase III su 99.5 4.1E-13 8.9E-18 153.3 19.9 205 248-493 5-238 (535)
119 PRK06647 DNA polymerase III su 99.5 4.1E-13 8.9E-18 155.0 19.4 211 249-494 8-241 (563)
120 PTZ00112 origin recognition co 99.5 6.3E-13 1.4E-17 154.9 20.6 219 255-498 753-1007(1164)
121 COG0593 DnaA ATPase involved i 99.5 7.6E-13 1.6E-17 145.8 19.8 242 250-527 80-332 (408)
122 PRK14955 DNA polymerase III su 99.5 3.8E-13 8.2E-18 149.8 17.4 216 248-494 7-254 (397)
123 PRK06620 hypothetical protein; 99.5 6.2E-13 1.3E-17 136.1 16.7 199 249-494 8-213 (214)
124 PRK05642 DNA replication initi 99.5 1.3E-12 2.7E-17 135.5 18.8 213 249-494 11-232 (234)
125 KOG0989 Replication factor C, 99.5 4.5E-13 9.7E-18 140.3 14.8 195 245-474 24-235 (346)
126 PRK06305 DNA polymerase III su 99.5 1.3E-12 2.8E-17 147.7 19.5 206 248-494 8-243 (451)
127 TIGR00390 hslU ATP-dependent p 99.5 1.4E-12 2.9E-17 143.7 18.1 177 257-437 12-343 (441)
128 PRK05201 hslU ATP-dependent pr 99.5 1.5E-12 3.3E-17 143.4 18.5 176 258-437 16-345 (443)
129 TIGR00382 clpX endopeptidase C 99.5 1.2E-12 2.7E-17 145.3 18.0 180 257-438 77-329 (413)
130 PRK14948 DNA polymerase III su 99.5 1.5E-12 3.3E-17 151.9 19.5 209 249-493 8-241 (620)
131 CHL00081 chlI Mg-protoporyphyr 99.5 1.1E-12 2.3E-17 143.0 16.3 224 251-502 11-327 (350)
132 TIGR02903 spore_lon_C ATP-depe 99.5 2.8E-12 6.1E-17 149.9 20.9 218 251-496 148-429 (615)
133 COG2812 DnaX DNA polymerase II 99.5 8.1E-13 1.8E-17 149.4 15.7 209 249-492 8-239 (515)
134 PRK14950 DNA polymerase III su 99.4 3.2E-12 7E-17 148.9 20.1 212 248-494 7-242 (585)
135 PRK14954 DNA polymerase III su 99.4 2.5E-12 5.5E-17 149.5 19.1 215 249-494 8-254 (620)
136 COG1224 TIP49 DNA helicase TIP 99.4 5.1E-12 1.1E-16 134.4 17.7 128 350-497 292-432 (450)
137 COG1474 CDC6 Cdc6-related prot 99.4 1.1E-11 2.5E-16 136.2 21.2 217 256-497 16-265 (366)
138 PF05673 DUF815: Protein of un 99.4 5.6E-12 1.2E-16 129.9 17.5 169 249-447 19-214 (249)
139 PRK11034 clpA ATP-dependent Cl 99.4 1.6E-12 3.5E-17 154.3 14.7 164 258-441 459-667 (758)
140 TIGR02639 ClpA ATP-dependent C 99.4 6.3E-12 1.4E-16 150.1 19.8 165 257-441 454-663 (731)
141 TIGR02030 BchI-ChlI magnesium 99.4 4.1E-12 9E-17 138.2 16.0 216 255-501 2-313 (337)
142 PRK14971 DNA polymerase III su 99.4 1.2E-11 2.7E-16 144.3 20.1 211 249-494 9-243 (614)
143 COG3829 RocR Transcriptional r 99.4 7.7E-13 1.7E-17 147.8 8.9 216 252-494 240-495 (560)
144 TIGR01650 PD_CobS cobaltochela 99.4 2.1E-12 4.6E-17 138.9 11.0 139 290-442 64-235 (327)
145 PRK09087 hypothetical protein; 99.4 2.4E-11 5.2E-16 125.4 17.6 205 248-497 12-222 (226)
146 TIGR02442 Cob-chelat-sub cobal 99.4 8.3E-12 1.8E-16 146.7 16.0 213 255-499 2-306 (633)
147 cd00009 AAA The AAA+ (ATPases 99.3 1.4E-11 2.9E-16 114.3 13.8 123 290-425 19-150 (151)
148 COG0542 clpA ATP-binding subun 99.3 8.1E-11 1.8E-15 138.0 22.0 168 250-441 163-347 (786)
149 PRK15424 propionate catabolism 99.3 6.5E-12 1.4E-16 144.1 11.7 210 254-490 216-478 (538)
150 COG2204 AtoC Response regulato 99.3 4.3E-12 9.2E-17 141.8 9.5 213 253-492 137-386 (464)
151 TIGR01817 nifA Nif-specific re 99.3 1.5E-11 3.2E-16 142.1 14.1 211 251-492 190-440 (534)
152 TIGR02329 propionate_PrpR prop 99.3 2.4E-11 5.2E-16 139.5 14.4 215 253-492 208-465 (526)
153 COG3604 FhlA Transcriptional r 99.3 1.5E-11 3.2E-16 136.0 12.0 200 253-477 219-456 (550)
154 TIGR03345 VI_ClpV1 type VI sec 99.3 7.3E-11 1.6E-15 142.6 18.7 195 257-474 566-827 (852)
155 COG0714 MoxR-like ATPases [Gen 99.3 9E-11 2E-15 127.6 17.7 132 292-439 45-202 (329)
156 PHA02244 ATPase-like protein 99.3 1.1E-10 2.5E-15 127.1 18.0 148 254-429 94-263 (383)
157 TIGR00368 Mg chelatase-related 99.3 9.8E-11 2.1E-15 133.6 17.5 213 253-495 188-497 (499)
158 TIGR03346 chaperone_ClpB ATP-d 99.3 1.2E-10 2.5E-15 141.4 18.9 202 257-477 565-825 (852)
159 TIGR02974 phageshock_pspF psp 99.3 5.7E-11 1.2E-15 129.3 14.3 191 259-477 1-233 (329)
160 PRK11608 pspF phage shock prot 99.3 6.8E-11 1.5E-15 128.5 14.8 195 255-477 4-240 (326)
161 PRK05022 anaerobic nitric oxid 99.2 6E-11 1.3E-15 136.3 14.9 196 255-478 185-421 (509)
162 PRK11388 DNA-binding transcrip 99.2 5.5E-11 1.2E-15 140.2 14.6 211 253-494 321-568 (638)
163 PRK10820 DNA-binding transcrip 99.2 6.6E-11 1.4E-15 136.3 14.8 208 252-490 199-447 (520)
164 PRK10865 protein disaggregatio 99.2 2.1E-10 4.6E-15 138.9 19.1 164 256-442 567-781 (857)
165 COG1221 PspF Transcriptional r 99.2 4.3E-11 9.4E-16 131.7 11.5 201 252-478 73-310 (403)
166 smart00350 MCM minichromosome 99.2 1.5E-10 3.2E-15 133.1 16.3 222 257-497 203-504 (509)
167 PRK09112 DNA polymerase III su 99.2 2.4E-10 5.2E-15 125.3 17.2 190 251-472 17-243 (351)
168 PRK13531 regulatory ATPase Rav 99.2 4.2E-10 9E-15 126.5 18.2 214 257-501 20-287 (498)
169 PF05621 TniB: Bacterial TniB 99.2 8.1E-10 1.8E-14 117.3 18.9 218 256-492 33-284 (302)
170 CHL00095 clpC Clp protease ATP 99.2 5.7E-10 1.2E-14 135.0 19.9 166 257-442 509-734 (821)
171 TIGR00764 lon_rel lon-related 99.2 4.6E-10 9.9E-15 131.2 17.8 102 395-498 268-392 (608)
172 COG0542 clpA ATP-binding subun 99.2 1.2E-10 2.6E-15 136.6 12.6 162 257-441 491-706 (786)
173 TIGR03015 pepcterm_ATPase puta 99.2 1.8E-09 4E-14 113.1 20.0 189 292-497 45-266 (269)
174 smart00382 AAA ATPases associa 99.2 2.2E-10 4.7E-15 104.9 11.4 126 290-427 2-147 (148)
175 KOG1969 DNA replication checkp 99.2 6.1E-10 1.3E-14 127.5 17.3 216 243-480 257-518 (877)
176 PRK07471 DNA polymerase III su 99.2 8.4E-10 1.8E-14 121.6 17.8 185 251-469 13-238 (365)
177 KOG1942 DNA helicase, TBP-inte 99.2 1.1E-09 2.4E-14 114.0 16.9 131 349-499 296-440 (456)
178 COG2607 Predicted ATPase (AAA+ 99.1 2E-09 4.4E-14 109.8 18.3 168 250-447 53-246 (287)
179 TIGR00678 holB DNA polymerase 99.1 5.7E-10 1.2E-14 111.4 14.3 144 288-460 12-183 (188)
180 PRK15429 formate hydrogenlyase 99.1 8.3E-10 1.8E-14 131.3 18.2 200 253-477 372-609 (686)
181 PF01078 Mg_chelatase: Magnesi 99.1 4.6E-11 1E-15 120.7 5.9 142 255-429 1-204 (206)
182 TIGR02031 BchD-ChlD magnesium 99.1 9.2E-10 2E-14 128.4 17.4 188 292-498 18-259 (589)
183 PF07728 AAA_5: AAA domain (dy 99.1 7.2E-11 1.6E-15 111.8 6.3 113 292-418 1-139 (139)
184 PRK05564 DNA polymerase III su 99.1 8.7E-10 1.9E-14 119.1 15.3 169 255-460 2-182 (313)
185 PRK11331 5-methylcytosine-spec 99.1 7.8E-10 1.7E-14 123.4 14.7 141 256-426 174-357 (459)
186 TIGR00602 rad24 checkpoint pro 99.1 1.4E-09 3E-14 126.9 17.4 262 242-529 69-391 (637)
187 PRK09862 putative ATP-dependen 99.1 1.7E-09 3.8E-14 123.2 16.4 209 254-495 188-490 (506)
188 KOG0991 Replication factor C, 99.1 8.8E-10 1.9E-14 111.7 11.5 207 245-494 15-234 (333)
189 PF06068 TIP49: TIP49 C-termin 99.1 3.3E-09 7.1E-14 114.9 16.5 66 255-327 22-89 (398)
190 COG0470 HolB ATPase involved i 99.0 4.2E-09 9.2E-14 112.9 16.6 149 257-436 1-177 (325)
191 TIGR02915 PEP_resp_reg putativ 99.0 8.7E-10 1.9E-14 124.3 11.7 207 255-491 137-383 (445)
192 PRK07399 DNA polymerase III su 99.0 5.5E-09 1.2E-13 113.0 17.2 183 255-471 2-223 (314)
193 KOG0741 AAA+-type ATPase [Post 99.0 3.1E-09 6.8E-14 117.9 15.2 159 268-438 522-684 (744)
194 COG1219 ClpX ATP-dependent pro 99.0 5.9E-10 1.3E-14 117.4 8.8 132 257-390 61-203 (408)
195 COG0606 Predicted ATPase with 99.0 5.1E-10 1.1E-14 124.1 8.3 210 253-495 175-483 (490)
196 PF00158 Sigma54_activat: Sigm 99.0 1.7E-09 3.6E-14 106.8 10.1 134 259-419 1-155 (168)
197 PF07724 AAA_2: AAA domain (Cd 99.0 1E-09 2.2E-14 108.7 8.2 110 292-406 5-131 (171)
198 PRK04132 replication factor C 99.0 7.3E-09 1.6E-13 123.9 16.9 171 292-493 566-750 (846)
199 PRK08058 DNA polymerase III su 99.0 9.8E-09 2.1E-13 111.9 16.4 149 255-438 3-180 (329)
200 PRK08116 hypothetical protein; 99.0 5E-09 1.1E-13 111.0 13.1 123 290-429 114-251 (268)
201 PRK10923 glnG nitrogen regulat 99.0 7.3E-09 1.6E-13 117.6 15.1 209 255-494 136-385 (469)
202 smart00763 AAA_PrkA PrkA AAA d 98.9 7.2E-09 1.6E-13 113.0 13.3 84 255-345 48-144 (361)
203 PRK05707 DNA polymerase III su 98.9 9.7E-09 2.1E-13 111.7 13.9 149 287-460 19-195 (328)
204 PRK11361 acetoacetate metaboli 98.9 2.9E-08 6.4E-13 112.1 16.6 209 255-494 141-390 (457)
205 COG1220 HslU ATP-dependent pro 98.9 1.3E-08 2.7E-13 108.3 12.1 83 351-437 252-346 (444)
206 TIGR01818 ntrC nitrogen regula 98.9 1.6E-08 3.5E-13 114.5 13.0 208 256-494 133-381 (463)
207 COG1239 ChlI Mg-chelatase subu 98.9 2E-08 4.3E-13 110.2 13.0 160 253-441 13-233 (423)
208 PTZ00111 DNA replication licen 98.9 3.7E-08 8.1E-13 117.5 16.1 158 257-435 450-652 (915)
209 PRK15115 response regulator Gl 98.8 2.1E-08 4.5E-13 113.1 12.7 205 258-493 135-380 (444)
210 PRK12377 putative replication 98.8 3.1E-08 6.6E-13 103.8 12.9 100 291-405 102-206 (248)
211 PRK08181 transposase; Validate 98.8 3.7E-08 8E-13 104.3 13.3 125 254-405 80-209 (269)
212 PF14532 Sigma54_activ_2: Sigm 98.8 6.7E-09 1.5E-13 98.8 6.8 127 260-428 1-137 (138)
213 PRK13765 ATP-dependent proteas 98.8 2.5E-08 5.5E-13 116.7 12.5 100 395-496 277-399 (637)
214 PRK07952 DNA replication prote 98.8 4.6E-08 1E-12 102.2 13.0 130 253-404 68-204 (244)
215 KOG0990 Replication factor C, 98.8 4.5E-08 9.7E-13 103.7 12.8 200 243-479 27-239 (360)
216 PRK06526 transposase; Provisio 98.8 3.4E-08 7.5E-13 103.8 10.7 100 290-405 98-201 (254)
217 PRK06964 DNA polymerase III su 98.8 4.4E-08 9.6E-13 107.0 11.7 134 287-439 18-203 (342)
218 KOG2680 DNA helicase TIP49, TB 98.7 2.3E-07 4.9E-12 97.4 16.0 131 350-500 289-432 (454)
219 PF13177 DNA_pol3_delta2: DNA 98.7 3.5E-08 7.6E-13 96.8 9.2 133 261-426 1-160 (162)
220 PF07726 AAA_3: ATPase family 98.7 1.3E-08 2.8E-13 95.6 5.5 111 292-418 1-129 (131)
221 KOG0745 Putative ATP-dependent 98.7 4.2E-08 9.1E-13 107.1 10.0 98 292-389 228-331 (564)
222 COG3283 TyrR Transcriptional r 98.7 9.7E-08 2.1E-12 102.2 12.5 212 251-491 198-443 (511)
223 PRK10365 transcriptional regul 98.7 6.9E-08 1.5E-12 108.5 11.6 205 258-493 140-385 (441)
224 PRK06835 DNA replication prote 98.7 1.4E-07 3E-12 102.8 12.2 111 291-418 184-305 (329)
225 KOG1514 Origin recognition com 98.7 4.2E-07 9.2E-12 104.5 16.6 196 292-501 424-659 (767)
226 PRK08939 primosomal protein Dn 98.7 1.1E-07 2.3E-12 102.8 10.8 101 289-405 155-261 (306)
227 PRK13406 bchD magnesium chelat 98.6 1.9E-07 4.1E-12 108.6 12.9 189 291-499 26-252 (584)
228 PRK08769 DNA polymerase III su 98.6 5.8E-07 1.2E-11 97.5 15.6 152 288-463 24-203 (319)
229 PF03215 Rad17: Rad17 cell cyc 98.6 4.2E-07 9.1E-12 104.4 15.1 212 243-478 5-269 (519)
230 PRK06871 DNA polymerase III su 98.6 6E-07 1.3E-11 97.5 15.3 129 288-439 22-178 (325)
231 PRK07993 DNA polymerase III su 98.6 4.3E-07 9.3E-12 99.2 13.8 149 287-461 21-197 (334)
232 PRK09183 transposase/IS protei 98.6 2.9E-07 6.4E-12 97.1 11.9 100 291-405 103-206 (259)
233 COG1484 DnaC DNA replication p 98.6 4E-07 8.6E-12 95.9 12.4 70 290-361 105-179 (254)
234 PF01637 Arch_ATPase: Archaeal 98.6 5.4E-07 1.2E-11 91.1 12.6 182 260-466 2-231 (234)
235 KOG2035 Replication factor C, 98.6 2.8E-06 6E-11 88.7 17.0 228 246-528 2-266 (351)
236 PF13173 AAA_14: AAA domain 98.5 6E-07 1.3E-11 84.3 10.6 120 291-431 3-126 (128)
237 PF01695 IstB_IS21: IstB-like 98.5 2.9E-07 6.2E-12 91.8 8.3 99 290-404 47-149 (178)
238 COG3284 AcoR Transcriptional a 98.5 2.2E-07 4.7E-12 106.3 7.6 206 260-496 316-556 (606)
239 PRK06090 DNA polymerase III su 98.5 3.1E-06 6.6E-11 91.8 15.6 130 287-438 22-178 (319)
240 KOG1051 Chaperone HSP104 and r 98.5 1E-06 2.2E-11 105.4 12.9 128 257-404 562-710 (898)
241 KOG2227 Pre-initiation complex 98.5 4.7E-06 1E-10 92.4 16.6 205 256-482 149-384 (529)
242 PRK06921 hypothetical protein; 98.4 1.3E-06 2.8E-11 92.6 11.6 68 290-360 117-188 (266)
243 PRK08699 DNA polymerase III su 98.4 1.3E-06 2.8E-11 95.2 11.8 131 288-438 19-183 (325)
244 PF03969 AFG1_ATPase: AFG1-lik 98.4 1E-06 2.2E-11 97.1 9.3 140 287-453 59-206 (362)
245 PF13401 AAA_22: AAA domain; P 98.3 1.3E-06 2.9E-11 81.1 7.6 71 291-361 5-99 (131)
246 COG1241 MCM2 Predicted ATPase 98.3 1.8E-06 3.9E-11 101.1 9.1 221 256-498 285-593 (682)
247 cd01120 RecA-like_NTPases RecA 98.3 3.9E-06 8.4E-11 79.9 9.9 110 293-406 2-138 (165)
248 PF06480 FtsH_ext: FtsH Extrac 98.2 9.6E-07 2.1E-11 79.5 4.5 96 91-190 2-109 (110)
249 PF12775 AAA_7: P-loop contain 98.2 4.3E-06 9.4E-11 88.9 10.1 164 253-441 6-194 (272)
250 KOG0480 DNA replication licens 98.2 8.8E-06 1.9E-10 92.8 12.7 222 255-497 343-643 (764)
251 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.6E-10 76.1 12.8 140 292-442 2-165 (166)
252 PF00493 MCM: MCM2/3/5 family 98.2 6.3E-07 1.4E-11 97.8 2.7 218 257-497 24-326 (331)
253 KOG1970 Checkpoint RAD17-RFC c 98.2 4.4E-05 9.5E-10 86.2 16.7 210 244-477 69-320 (634)
254 KOG0478 DNA replication licens 98.2 3.3E-05 7.1E-10 88.9 15.7 156 258-430 430-616 (804)
255 PF12774 AAA_6: Hydrolytic ATP 98.2 2E-05 4.4E-10 81.8 12.6 124 292-436 34-176 (231)
256 TIGR02237 recomb_radB DNA repa 98.1 1.2E-05 2.7E-10 81.3 9.6 115 286-403 8-148 (209)
257 COG1485 Predicted ATPase [Gene 98.1 1.4E-05 2.9E-10 86.5 10.1 138 287-452 62-208 (367)
258 COG3267 ExeA Type II secretory 98.1 0.0001 2.2E-09 76.7 15.7 183 293-491 54-267 (269)
259 PLN03210 Resistant to P. syrin 98.1 5.5E-05 1.2E-09 95.4 16.0 178 252-463 179-390 (1153)
260 KOG2383 Predicted ATPase [Gene 98.0 5.3E-05 1.1E-09 82.9 12.0 160 287-474 111-297 (467)
261 PF13191 AAA_16: AAA ATPase do 97.9 1.6E-05 3.5E-10 77.9 6.6 59 259-326 2-63 (185)
262 PRK05917 DNA polymerase III su 97.9 6.1E-05 1.3E-09 80.6 11.3 121 288-427 17-154 (290)
263 KOG0482 DNA replication licens 97.9 2.8E-05 6.1E-10 86.7 8.9 227 258-497 343-638 (721)
264 PF00931 NB-ARC: NB-ARC domain 97.9 0.00012 2.6E-09 77.3 13.5 172 268-469 4-202 (287)
265 cd01124 KaiC KaiC is a circadi 97.9 7.7E-05 1.7E-09 73.7 11.0 102 293-405 2-140 (187)
266 PRK11823 DNA repair protein Ra 97.9 8.1E-05 1.8E-09 84.6 11.5 78 286-363 76-170 (446)
267 TIGR02688 conserved hypothetic 97.8 0.00025 5.5E-09 79.1 13.7 76 263-361 193-272 (449)
268 PRK07132 DNA polymerase III su 97.8 0.00078 1.7E-08 72.7 17.1 127 288-438 16-160 (299)
269 cd01121 Sms Sms (bacterial rad 97.8 0.00012 2.5E-09 81.4 10.9 78 286-363 78-172 (372)
270 PHA00729 NTP-binding motif con 97.8 8E-05 1.7E-09 76.9 8.7 24 292-315 19-42 (226)
271 PRK09361 radB DNA repair and r 97.7 0.00014 3E-09 74.6 10.0 116 286-403 19-160 (225)
272 PRK05818 DNA polymerase III su 97.7 0.00017 3.8E-09 75.8 10.7 121 288-427 5-147 (261)
273 PF00910 RNA_helicase: RNA hel 97.7 7E-05 1.5E-09 68.3 6.6 23 293-315 1-23 (107)
274 PRK07276 DNA polymerase III su 97.7 0.00059 1.3E-08 73.3 14.5 128 288-437 22-172 (290)
275 TIGR01618 phage_P_loop phage n 97.7 9.3E-05 2E-09 76.3 7.3 71 289-363 11-95 (220)
276 PRK06067 flagellar accessory p 97.7 0.00025 5.4E-09 73.4 10.4 40 286-325 21-63 (234)
277 PRK00131 aroK shikimate kinase 97.6 0.00017 3.6E-09 70.2 8.3 39 289-329 3-41 (175)
278 TIGR02012 tigrfam_recA protein 97.6 0.00029 6.4E-09 76.5 10.9 118 286-403 51-190 (321)
279 KOG1968 Replication factor C, 97.6 0.00018 3.9E-09 87.0 10.1 211 245-476 308-535 (871)
280 KOG2170 ATPase of the AAA+ sup 97.6 0.0029 6.2E-08 67.4 17.7 125 257-405 82-225 (344)
281 PRK08533 flagellar accessory p 97.6 0.00043 9.4E-09 71.9 11.1 76 287-362 21-130 (230)
282 PF05707 Zot: Zonular occluden 97.6 0.00011 2.5E-09 74.0 6.4 124 293-428 3-147 (193)
283 COG5271 MDN1 AAA ATPase contai 97.6 0.00023 4.9E-09 87.8 9.4 135 290-442 1543-1705(4600)
284 cd01394 radB RadB. The archaea 97.6 0.00034 7.4E-09 71.4 9.7 117 286-404 15-157 (218)
285 PRK08118 topology modulation p 97.5 0.00013 2.8E-09 72.0 6.1 33 292-324 3-35 (167)
286 COG1618 Predicted nucleotide k 97.5 0.0005 1.1E-08 67.1 9.7 26 289-314 4-29 (179)
287 COG1116 TauB ABC-type nitrate/ 97.5 0.00018 3.9E-09 74.8 7.0 27 286-312 23-51 (248)
288 cd03283 ABC_MutS-like MutS-lik 97.5 0.0004 8.8E-09 70.5 9.5 104 291-408 26-151 (199)
289 KOG0477 DNA replication licens 97.5 0.00041 8.9E-09 79.3 10.3 62 258-321 450-513 (854)
290 PF13207 AAA_17: AAA domain; P 97.5 7.1E-05 1.5E-09 68.7 3.6 30 293-322 2-31 (121)
291 PRK15455 PrkA family serine pr 97.5 0.00012 2.5E-09 84.4 5.8 63 255-323 74-137 (644)
292 PRK14722 flhF flagellar biosyn 97.5 0.00035 7.6E-09 77.4 9.1 111 288-413 135-267 (374)
293 TIGR02858 spore_III_AA stage I 97.5 0.00032 6.9E-09 74.6 8.5 113 291-425 112-256 (270)
294 COG1373 Predicted ATPase (AAA+ 97.5 0.00088 1.9E-08 75.2 12.3 123 292-434 39-161 (398)
295 cd00983 recA RecA is a bacter 97.5 0.00056 1.2E-08 74.5 10.3 117 287-403 52-190 (325)
296 TIGR00416 sms DNA repair prote 97.5 0.00073 1.6E-08 77.0 11.4 78 286-363 90-184 (454)
297 KOG1051 Chaperone HSP104 and r 97.4 0.00078 1.7E-08 81.3 11.7 163 255-442 184-365 (898)
298 PRK13949 shikimate kinase; Pro 97.4 0.00097 2.1E-08 66.0 10.2 31 292-322 3-33 (169)
299 PF13671 AAA_33: AAA domain; P 97.4 0.0005 1.1E-08 64.8 7.9 37 293-331 2-38 (143)
300 PRK12339 2-phosphoglycerate ki 97.4 0.0022 4.8E-08 65.1 12.9 186 290-499 3-193 (197)
301 PRK04296 thymidine kinase; Pro 97.4 0.00059 1.3E-08 68.7 8.6 70 292-361 4-90 (190)
302 PF07693 KAP_NTPase: KAP famil 97.4 0.0048 1E-07 66.5 16.0 77 348-440 171-263 (325)
303 KOG2228 Origin recognition com 97.4 0.0017 3.7E-08 70.0 11.9 160 258-440 25-219 (408)
304 PRK07261 topology modulation p 97.3 0.0003 6.6E-09 69.6 5.8 32 293-324 3-34 (171)
305 PRK09376 rho transcription ter 97.3 0.00076 1.6E-08 74.8 9.4 72 293-364 172-271 (416)
306 PF06745 KaiC: KaiC; InterPro 97.3 0.0014 3E-08 67.3 10.9 108 286-403 15-159 (226)
307 PRK14532 adenylate kinase; Pro 97.3 0.0006 1.3E-08 67.9 7.9 36 292-329 2-37 (188)
308 cd01393 recA_like RecA is a b 97.3 0.00073 1.6E-08 69.1 8.5 116 286-402 15-166 (226)
309 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00098 2.1E-08 68.6 9.5 116 286-402 15-167 (235)
310 KOG0481 DNA replication licens 97.3 0.0017 3.6E-08 73.1 11.7 141 291-441 365-533 (729)
311 cd00046 DEXDc DEAD-like helica 97.3 0.0016 3.5E-08 59.2 9.9 24 291-314 1-24 (144)
312 PRK06762 hypothetical protein; 97.3 0.00098 2.1E-08 65.0 8.4 41 290-330 2-42 (166)
313 cd01128 rho_factor Transcripti 97.3 0.0022 4.8E-08 67.5 11.4 25 292-316 18-42 (249)
314 PRK00771 signal recognition pa 97.3 0.0052 1.1E-07 69.7 15.1 39 288-326 93-134 (437)
315 PRK12723 flagellar biosynthesi 97.2 0.0024 5.1E-08 71.4 11.9 130 289-433 173-328 (388)
316 PF14516 AAA_35: AAA-like doma 97.2 0.023 4.9E-07 62.3 19.3 160 292-462 33-233 (331)
317 PRK10536 hypothetical protein; 97.2 0.0013 2.8E-08 69.3 9.0 46 254-313 52-97 (262)
318 PRK05973 replicative DNA helic 97.2 0.0024 5.2E-08 66.7 11.0 40 286-325 60-102 (237)
319 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0018 3.8E-08 67.4 10.0 40 286-325 17-59 (237)
320 PF00437 T2SE: Type II/IV secr 97.2 0.00034 7.3E-09 73.9 4.7 101 250-360 97-208 (270)
321 PRK13948 shikimate kinase; Pro 97.2 0.0013 2.7E-08 66.1 8.4 42 289-332 9-50 (182)
322 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0023 5.1E-08 65.6 10.4 113 290-412 29-161 (213)
323 cd01122 GP4d_helicase GP4d_hel 97.2 0.0021 4.6E-08 67.7 10.1 39 286-324 26-68 (271)
324 KOG2543 Origin recognition com 97.1 0.0079 1.7E-07 66.0 14.3 161 256-439 5-192 (438)
325 cd00984 DnaB_C DnaB helicase C 97.1 0.0027 5.8E-08 65.7 10.4 39 286-324 9-51 (242)
326 PF03266 NTPase_1: NTPase; In 97.1 0.00081 1.8E-08 66.6 6.2 27 292-318 1-30 (168)
327 COG0563 Adk Adenylate kinase a 97.1 0.0015 3.2E-08 65.4 8.0 35 292-328 2-36 (178)
328 PF13604 AAA_30: AAA domain; P 97.1 0.0018 3.9E-08 65.6 8.8 97 292-404 20-132 (196)
329 COG4650 RtcR Sigma54-dependent 97.1 0.0058 1.2E-07 64.8 12.5 133 287-436 205-368 (531)
330 cd00464 SK Shikimate kinase (S 97.1 0.00082 1.8E-08 64.2 5.9 39 292-332 1-39 (154)
331 PRK09354 recA recombinase A; P 97.1 0.0022 4.7E-08 70.5 9.8 115 287-401 57-193 (349)
332 PRK04040 adenylate kinase; Pro 97.1 0.0059 1.3E-07 61.5 12.2 35 290-326 2-38 (188)
333 PRK13947 shikimate kinase; Pro 97.1 0.00047 1E-08 67.4 4.1 31 292-322 3-33 (171)
334 PRK14974 cell division protein 97.1 0.0036 7.9E-08 68.6 11.3 73 289-361 139-234 (336)
335 COG4619 ABC-type uncharacteriz 97.1 0.0044 9.5E-08 61.2 10.4 22 291-312 30-51 (223)
336 PF05272 VirE: Virulence-assoc 97.1 0.0032 7E-08 64.0 10.1 125 266-426 34-169 (198)
337 cd03216 ABC_Carb_Monos_I This 97.1 0.0013 2.8E-08 64.5 6.9 103 290-406 26-143 (163)
338 PRK04841 transcriptional regul 97.1 0.0096 2.1E-07 73.1 16.1 150 292-462 34-219 (903)
339 TIGR02782 TrbB_P P-type conjug 97.1 0.00057 1.2E-08 73.8 4.7 69 291-359 133-214 (299)
340 COG3854 SpoIIIAA ncharacterize 97.1 0.0041 8.9E-08 64.1 10.5 70 292-361 139-230 (308)
341 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0058 1.3E-07 62.7 11.8 109 286-403 12-152 (224)
342 PF06309 Torsin: Torsin; Inte 97.0 0.0034 7.3E-08 59.2 9.0 52 257-314 25-77 (127)
343 PRK13946 shikimate kinase; Pro 97.0 0.0016 3.4E-08 65.1 7.2 34 289-322 9-42 (184)
344 COG0703 AroK Shikimate kinase 97.0 0.0016 3.5E-08 64.5 7.1 32 291-322 3-34 (172)
345 PRK03839 putative kinase; Prov 97.0 0.00055 1.2E-08 67.8 3.7 31 292-322 2-32 (180)
346 PF10236 DAP3: Mitochondrial r 97.0 0.032 6.9E-07 60.6 17.4 130 338-468 142-308 (309)
347 PRK05800 cobU adenosylcobinami 97.0 0.0038 8.3E-08 61.9 9.4 95 292-389 3-114 (170)
348 cd01130 VirB11-like_ATPase Typ 97.0 0.00099 2.1E-08 66.7 5.3 69 291-359 26-110 (186)
349 PLN02200 adenylate kinase fami 97.0 0.00096 2.1E-08 69.5 5.3 42 286-329 39-80 (234)
350 TIGR02238 recomb_DMC1 meiotic 97.0 0.0027 5.9E-08 69.0 8.9 114 287-401 93-242 (313)
351 PRK00625 shikimate kinase; Pro 97.0 0.00071 1.5E-08 67.3 4.0 31 292-322 2-32 (173)
352 cd00227 CPT Chloramphenicol (C 96.9 0.00079 1.7E-08 66.5 4.3 39 291-329 3-41 (175)
353 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0044 9.6E-08 63.7 9.9 38 286-323 16-56 (229)
354 PF00448 SRP54: SRP54-type pro 96.9 0.0018 4E-08 65.6 6.8 108 290-409 1-131 (196)
355 TIGR02236 recomb_radA DNA repa 96.9 0.0037 7.9E-08 67.6 9.5 116 286-402 91-244 (310)
356 PRK12724 flagellar biosynthesi 96.9 0.013 2.8E-07 66.0 13.9 115 290-413 223-354 (432)
357 PRK04301 radA DNA repair and r 96.9 0.0033 7.1E-08 68.3 9.1 117 286-403 98-251 (317)
358 cd02020 CMPK Cytidine monophos 96.9 0.0024 5.3E-08 60.2 7.1 30 293-322 2-31 (147)
359 cd01131 PilT Pilus retraction 96.9 0.0013 2.8E-08 66.7 5.5 67 292-358 3-83 (198)
360 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0045 9.8E-08 65.4 9.7 39 286-324 32-73 (259)
361 smart00534 MUTSac ATPase domai 96.9 0.0048 1.1E-07 61.7 9.5 102 293-406 2-123 (185)
362 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0054 1.2E-07 64.1 10.1 36 293-328 2-40 (249)
363 KOG3347 Predicted nucleotide k 96.9 0.00076 1.6E-08 65.0 3.2 34 292-327 9-42 (176)
364 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00089 1.9E-08 66.2 3.8 35 293-329 2-36 (183)
365 COG4178 ABC-type uncharacteriz 96.8 0.0023 5E-08 74.4 7.5 54 338-406 522-575 (604)
366 PLN03187 meiotic recombination 96.8 0.0037 8E-08 68.8 8.7 115 286-401 122-272 (344)
367 TIGR01420 pilT_fam pilus retra 96.8 0.0024 5.3E-08 70.2 7.3 68 292-359 124-205 (343)
368 cd02027 APSK Adenosine 5'-phos 96.8 0.0043 9.3E-08 60.0 8.1 36 293-328 2-40 (149)
369 PRK04328 hypothetical protein; 96.8 0.011 2.5E-07 62.0 11.9 39 286-324 19-60 (249)
370 PRK09519 recA DNA recombinatio 96.8 0.0062 1.3E-07 73.2 11.0 116 287-402 57-194 (790)
371 PTZ00035 Rad51 protein; Provis 96.8 0.0056 1.2E-07 67.3 9.8 115 286-401 114-264 (337)
372 cd03238 ABC_UvrA The excision 96.8 0.0096 2.1E-07 59.4 10.6 114 291-425 22-162 (176)
373 cd01125 repA Hexameric Replica 96.8 0.006 1.3E-07 63.4 9.5 33 293-325 4-51 (239)
374 PRK14531 adenylate kinase; Pro 96.8 0.0013 2.8E-08 65.6 4.3 36 291-328 3-38 (183)
375 PLN02674 adenylate kinase 96.8 0.0057 1.2E-07 64.2 9.2 38 290-329 31-68 (244)
376 PRK06217 hypothetical protein; 96.8 0.0012 2.6E-08 65.8 4.0 31 292-322 3-33 (183)
377 PRK13894 conjugal transfer ATP 96.8 0.0018 3.9E-08 70.6 5.6 69 291-359 149-229 (319)
378 TIGR02655 circ_KaiC circadian 96.8 0.0048 1E-07 71.1 9.3 77 286-362 259-366 (484)
379 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0063 1.4E-07 58.4 8.7 98 290-406 26-128 (144)
380 PRK13695 putative NTPase; Prov 96.7 0.018 3.9E-07 56.8 11.8 23 292-314 2-24 (174)
381 smart00487 DEXDc DEAD-like hel 96.7 0.014 3E-07 56.5 10.9 33 291-323 25-62 (201)
382 cd02021 GntK Gluconate kinase 96.7 0.0013 2.9E-08 62.9 3.7 33 293-327 2-34 (150)
383 PRK11889 flhF flagellar biosyn 96.7 0.017 3.7E-07 64.5 12.7 94 263-360 217-331 (436)
384 COG1066 Sms Predicted ATP-depe 96.7 0.012 2.6E-07 65.2 11.4 147 292-444 95-260 (456)
385 cd00544 CobU Adenosylcobinamid 96.7 0.0092 2E-07 59.2 9.7 94 293-388 2-113 (169)
386 PRK08154 anaerobic benzoate ca 96.7 0.0051 1.1E-07 66.7 8.6 33 288-320 131-163 (309)
387 cd01428 ADK Adenylate kinase ( 96.7 0.0014 2.9E-08 65.3 3.8 35 293-329 2-36 (194)
388 PRK13833 conjugal transfer pro 96.7 0.0022 4.8E-08 69.9 5.6 68 291-358 145-224 (323)
389 PTZ00202 tuzin; Provisional 96.7 0.049 1.1E-06 61.5 16.0 64 253-325 258-321 (550)
390 PRK13900 type IV secretion sys 96.7 0.0033 7.1E-08 68.9 6.9 70 290-359 160-245 (332)
391 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0043 9.4E-08 65.8 7.5 95 253-360 56-160 (264)
392 cd03243 ABC_MutS_homologs The 96.7 0.0052 1.1E-07 62.2 7.8 21 292-312 31-51 (202)
393 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0052 1.1E-07 66.9 8.2 115 286-401 92-242 (316)
394 PTZ00088 adenylate kinase 1; P 96.7 0.0018 4E-08 67.3 4.5 38 289-328 5-42 (229)
395 PRK06696 uridine kinase; Valid 96.7 0.0034 7.3E-08 64.7 6.4 39 290-328 22-63 (223)
396 PRK13808 adenylate kinase; Pro 96.6 0.011 2.3E-07 64.8 10.1 34 293-328 3-36 (333)
397 PF01745 IPT: Isopentenyl tran 96.6 0.0026 5.7E-08 65.0 5.1 132 292-440 3-139 (233)
398 TIGR02655 circ_KaiC circadian 96.6 0.015 3.2E-07 67.1 11.9 40 286-325 17-60 (484)
399 TIGR02788 VirB11 P-type DNA tr 96.6 0.0038 8.3E-08 67.6 6.7 72 288-359 142-228 (308)
400 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.01 2.2E-07 60.1 9.4 20 292-311 30-49 (200)
401 TIGR01313 therm_gnt_kin carboh 96.6 0.0016 3.4E-08 63.3 3.4 32 293-326 1-32 (163)
402 PRK13764 ATPase; Provisional 96.6 0.003 6.4E-08 74.1 6.0 70 290-360 257-335 (602)
403 PRK03731 aroL shikimate kinase 96.6 0.0022 4.7E-08 62.8 4.2 31 291-321 3-33 (171)
404 PRK05057 aroK shikimate kinase 96.6 0.0022 4.9E-08 63.5 4.3 34 290-323 4-37 (172)
405 PRK06547 hypothetical protein; 96.6 0.0022 4.7E-08 63.8 4.2 33 289-321 14-46 (172)
406 COG4088 Predicted nucleotide k 96.6 0.0081 1.8E-07 61.0 8.1 22 293-314 4-25 (261)
407 TIGR03499 FlhF flagellar biosy 96.6 0.0072 1.6E-07 64.7 8.4 38 289-326 193-235 (282)
408 PLN03186 DNA repair protein RA 96.6 0.0072 1.6E-07 66.5 8.5 115 287-402 120-270 (342)
409 PF09848 DUF2075: Uncharacteri 96.6 0.011 2.3E-07 65.3 9.9 23 292-314 3-25 (352)
410 PF13481 AAA_25: AAA domain; P 96.6 0.0065 1.4E-07 60.4 7.5 73 292-364 34-156 (193)
411 cd03228 ABCC_MRP_Like The MRP 96.6 0.0078 1.7E-07 59.2 8.0 103 290-408 28-158 (171)
412 PRK14530 adenylate kinase; Pro 96.6 0.0021 4.5E-08 65.7 4.1 35 292-328 5-39 (215)
413 PRK10416 signal recognition pa 96.5 0.028 6E-07 61.4 12.9 38 288-325 112-152 (318)
414 PHA02530 pseT polynucleotide k 96.5 0.0066 1.4E-07 64.9 8.1 40 290-330 2-41 (300)
415 COG2074 2-phosphoglycerate kin 96.5 0.061 1.3E-06 56.3 14.4 188 287-501 86-285 (299)
416 COG2874 FlaH Predicted ATPases 96.5 0.014 3E-07 59.7 9.6 125 278-414 14-176 (235)
417 PHA02624 large T antigen; Prov 96.5 0.0042 9.1E-08 72.2 6.6 121 286-425 427-560 (647)
418 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0089 1.9E-07 57.8 7.9 104 291-409 26-144 (157)
419 cd03222 ABC_RNaseL_inhibitor T 96.5 0.012 2.5E-07 58.9 8.8 101 292-406 27-133 (177)
420 cd03246 ABCC_Protease_Secretio 96.5 0.0071 1.5E-07 59.6 7.2 101 292-406 30-157 (173)
421 PF12780 AAA_8: P-loop contain 96.5 0.012 2.7E-07 62.5 9.5 173 257-444 8-214 (268)
422 cd03247 ABCC_cytochrome_bd The 96.5 0.017 3.7E-07 57.1 9.9 104 289-407 27-159 (178)
423 PHA02774 E1; Provisional 96.5 0.011 2.5E-07 68.4 9.7 33 291-323 435-468 (613)
424 cd03115 SRP The signal recogni 96.5 0.014 3E-07 57.3 9.2 34 293-326 3-39 (173)
425 cd03223 ABCD_peroxisomal_ALDP 96.4 0.015 3.2E-07 57.1 9.1 100 290-406 27-149 (166)
426 TIGR00064 ftsY signal recognit 96.4 0.053 1.1E-06 57.9 14.0 38 288-325 70-110 (272)
427 PRK05541 adenylylsulfate kinas 96.4 0.0092 2E-07 58.8 7.7 40 289-328 6-48 (176)
428 COG1102 Cmk Cytidylate kinase 96.4 0.0025 5.3E-08 62.4 3.4 28 293-320 3-30 (179)
429 PRK14528 adenylate kinase; Pro 96.4 0.0028 6.1E-08 63.5 4.0 34 292-327 3-36 (186)
430 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0087 1.9E-07 65.4 8.0 70 291-361 163-243 (325)
431 PRK13851 type IV secretion sys 96.4 0.0052 1.1E-07 67.7 6.2 72 288-359 160-246 (344)
432 cd03227 ABC_Class2 ABC-type Cl 96.4 0.0097 2.1E-07 58.2 7.5 22 290-311 21-42 (162)
433 PF04665 Pox_A32: Poxvirus A32 96.4 0.045 9.7E-07 57.4 12.7 132 289-439 12-169 (241)
434 TIGR01360 aden_kin_iso1 adenyl 96.4 0.003 6.6E-08 62.3 4.0 34 292-327 5-38 (188)
435 cd03230 ABC_DR_subfamily_A Thi 96.4 0.022 4.7E-07 56.2 10.0 101 292-406 28-156 (173)
436 COG1120 FepC ABC-type cobalami 96.3 0.0072 1.5E-07 63.8 6.6 29 285-313 21-51 (258)
437 PRK04220 2-phosphoglycerate ki 96.3 0.13 2.8E-06 55.7 16.2 40 288-328 90-129 (301)
438 PRK09302 circadian clock prote 96.3 0.028 6.1E-07 65.1 12.2 41 286-326 27-71 (509)
439 TIGR01351 adk adenylate kinase 96.3 0.0031 6.6E-08 64.3 3.8 34 293-328 2-35 (210)
440 PRK14527 adenylate kinase; Pro 96.3 0.0031 6.7E-08 63.2 3.7 37 289-327 5-41 (191)
441 PF05970 PIF1: PIF1-like helic 96.3 0.019 4.1E-07 63.7 10.2 54 263-325 4-60 (364)
442 PRK02496 adk adenylate kinase; 96.3 0.0034 7.3E-08 62.4 3.9 30 292-321 3-32 (184)
443 COG2274 SunT ABC-type bacterio 96.3 0.0066 1.4E-07 72.8 6.9 67 337-425 615-681 (709)
444 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.024 5.2E-07 57.9 10.1 103 291-409 30-155 (204)
445 cd02019 NK Nucleoside/nucleoti 96.3 0.0077 1.7E-07 50.5 5.4 31 293-323 2-33 (69)
446 KOG0479 DNA replication licens 96.3 0.082 1.8E-06 60.8 14.9 147 258-422 302-479 (818)
447 PRK14730 coaE dephospho-CoA ki 96.3 0.014 3E-07 59.1 8.3 39 292-332 3-41 (195)
448 PF08423 Rad51: Rad51; InterP 96.3 0.0081 1.8E-07 63.5 6.8 110 293-403 41-186 (256)
449 PF00406 ADK: Adenylate kinase 96.3 0.0083 1.8E-07 57.7 6.3 35 295-331 1-35 (151)
450 PRK14529 adenylate kinase; Pro 96.3 0.013 2.7E-07 60.8 8.0 35 292-328 2-36 (223)
451 COG5271 MDN1 AAA ATPase contai 96.3 0.014 3.1E-07 73.1 9.2 135 292-441 890-1048(4600)
452 PRK06581 DNA polymerase III su 96.2 0.14 3E-06 53.7 15.2 136 290-444 15-165 (263)
453 TIGR02525 plasmid_TraJ plasmid 96.2 0.0084 1.8E-07 66.7 6.8 69 292-360 151-236 (372)
454 TIGR00152 dephospho-CoA kinase 96.2 0.023 5E-07 56.8 9.3 40 293-334 2-41 (188)
455 PRK00279 adk adenylate kinase; 96.2 0.0039 8.5E-08 63.7 3.9 34 293-328 3-36 (215)
456 PRK10867 signal recognition pa 96.2 0.027 5.8E-07 63.9 10.8 74 288-361 98-195 (433)
457 PRK05703 flhF flagellar biosyn 96.2 0.033 7.2E-07 63.1 11.5 37 290-326 221-262 (424)
458 COG1936 Predicted nucleotide k 96.2 0.0034 7.3E-08 62.1 2.9 30 292-322 2-31 (180)
459 PF13238 AAA_18: AAA domain; P 96.2 0.0036 7.7E-08 57.4 3.0 22 293-314 1-22 (129)
460 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.013 2.8E-07 64.3 7.6 83 256-345 59-144 (358)
461 cd03215 ABC_Carb_Monos_II This 96.2 0.024 5.2E-07 56.4 9.0 24 291-314 27-50 (182)
462 PRK08099 bifunctional DNA-bind 96.2 0.013 2.8E-07 65.9 7.9 38 290-327 219-256 (399)
463 PRK01184 hypothetical protein; 96.2 0.0044 9.5E-08 61.5 3.7 33 292-327 3-35 (184)
464 PF13245 AAA_19: Part of AAA d 96.1 0.0073 1.6E-07 52.0 4.5 32 293-324 13-51 (76)
465 PF06414 Zeta_toxin: Zeta toxi 96.1 0.015 3.3E-07 58.7 7.6 42 288-329 13-55 (199)
466 PRK09302 circadian clock prote 96.1 0.023 4.9E-07 65.9 10.0 77 286-362 269-376 (509)
467 PRK04182 cytidylate kinase; Pr 96.1 0.0049 1.1E-07 60.3 3.9 29 292-320 2-30 (180)
468 TIGR00767 rho transcription te 96.1 0.022 4.8E-07 63.6 9.4 23 292-314 170-192 (415)
469 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.027 5.9E-07 58.3 9.5 105 291-409 32-158 (222)
470 PRK00889 adenylylsulfate kinas 96.1 0.021 4.6E-07 56.2 8.3 39 290-328 4-45 (175)
471 COG2884 FtsE Predicted ATPase 96.1 0.027 5.9E-07 56.8 8.9 33 282-314 18-52 (223)
472 TIGR01425 SRP54_euk signal rec 96.1 0.046 1E-06 61.8 11.9 39 288-326 98-139 (429)
473 PRK12608 transcription termina 96.1 0.04 8.6E-07 61.2 10.9 23 292-314 135-157 (380)
474 COG5245 DYN1 Dynein, heavy cha 96.1 0.026 5.7E-07 70.3 10.0 179 288-479 1492-1718(3164)
475 KOG3928 Mitochondrial ribosome 96.1 0.24 5.3E-06 55.1 16.6 49 421-470 405-457 (461)
476 cd03213 ABCG_EPDR ABCG transpo 96.0 0.034 7.3E-07 56.0 9.6 25 290-314 35-59 (194)
477 PF13521 AAA_28: AAA domain; P 96.0 0.0062 1.3E-07 59.3 4.1 34 293-327 2-35 (163)
478 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0058 1.3E-07 59.3 3.8 28 293-320 3-30 (171)
479 COG1136 SalX ABC-type antimicr 96.0 0.063 1.4E-06 55.7 11.4 67 339-425 150-216 (226)
480 PF02562 PhoH: PhoH-like prote 96.0 0.013 2.9E-07 59.9 6.2 23 292-314 21-43 (205)
481 PRK12727 flagellar biosynthesi 95.9 0.046 1E-06 63.2 11.1 36 289-324 349-389 (559)
482 TIGR00150 HI0065_YjeE ATPase, 95.9 0.014 3E-07 55.8 5.8 26 292-317 24-49 (133)
483 cd03232 ABC_PDR_domain2 The pl 95.9 0.052 1.1E-06 54.5 10.3 23 291-313 34-56 (192)
484 PRK08233 hypothetical protein; 95.9 0.0076 1.6E-07 59.1 4.2 33 291-323 4-37 (182)
485 COG2804 PulE Type II secretory 95.9 0.017 3.7E-07 65.7 7.5 97 251-361 232-339 (500)
486 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.025 5.4E-07 58.2 8.1 22 291-312 31-52 (216)
487 COG3842 PotA ABC-type spermidi 95.9 0.0095 2.1E-07 65.6 5.3 27 286-312 25-53 (352)
488 PRK14737 gmk guanylate kinase; 95.9 0.015 3.2E-07 58.6 6.2 26 289-314 3-28 (186)
489 cd03214 ABC_Iron-Siderophores_ 95.9 0.025 5.4E-07 56.1 7.7 104 291-407 26-160 (180)
490 PLN02199 shikimate kinase 95.9 0.014 3E-07 62.8 6.1 31 292-322 104-134 (303)
491 TIGR03819 heli_sec_ATPase heli 95.9 0.01 2.2E-07 65.4 5.2 69 291-359 179-263 (340)
492 PRK13541 cytochrome c biogenes 95.9 0.068 1.5E-06 53.7 10.7 26 289-314 25-50 (195)
493 TIGR01448 recD_rel helicase, p 95.8 0.023 4.9E-07 68.6 8.3 97 292-405 340-455 (720)
494 cd03229 ABC_Class3 This class 95.8 0.027 5.8E-07 55.8 7.5 23 292-314 28-50 (178)
495 PF01583 APS_kinase: Adenylyls 95.8 0.012 2.6E-07 57.7 4.7 39 290-328 2-43 (156)
496 PF07931 CPT: Chloramphenicol 95.8 0.013 2.8E-07 58.5 4.9 38 292-329 3-40 (174)
497 COG4133 CcmA ABC-type transpor 95.7 0.049 1.1E-06 54.8 8.9 51 350-414 149-199 (209)
498 cd03239 ABC_SMC_head The struc 95.7 0.082 1.8E-06 52.7 10.6 23 292-314 24-46 (178)
499 COG1855 ATPase (PilT family) [ 95.7 0.0094 2E-07 66.5 4.1 46 252-314 242-287 (604)
500 PF13479 AAA_24: AAA domain 95.7 0.015 3.3E-07 59.5 5.5 67 290-361 3-80 (213)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-112 Score=956.78 Aligned_cols=587 Identities=52% Similarity=0.814 Sum_probs=527.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEecCcccCCceeEEEEEcC--
Q 005003 92 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLP-- 169 (720)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (720)
+|++++++++.+++.+.. .....++|++|+.++..++|++|.+..++.........+ ...++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~ 68 (596)
T COG0465 2 LWLLIAIVLIFLFNLFTN-------SSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG------SKNTVYLPKG 68 (596)
T ss_pred chhHHHHHHHHHHHHhhh-------cccccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC------cceEEeecCC
Confidence 466666666666666642 234689999999999999999999976553322222221 12233344
Q ss_pred CCcHHHHHHHHhcCcceeeccCCCccccchhhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccc
Q 005003 170 GLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQME 249 (720)
Q Consensus 170 ~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 249 (720)
..++++...+..+++.+....+... ++|..++..+++.+++++.++|++++...+. ++.+ .|++|+|+++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g---~g~~-~~~~gkskak~~~~ 142 (596)
T COG0465 69 VNDPNLVSFLDSNNITESGFIPEDN--SLLASLLSTWLPFILLIGLGWFFFRRQAQGG---GGGG-AFSFGKSKAKLYLE 142 (596)
T ss_pred cccHHHHHHHHhcCCcccccCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCc-ccCCChHHHHHhcc
Confidence 3477899999999986665554333 5677777777777777775655554433221 2222 79999999999988
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
....++|+|++|+|++|+++.|+|+++++|.+|..+|+++|+|+||+||||||||+||||+|+|+++||+++|+|+|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
|+|.+++++|++|.+|++++||||||||||+++++|+.+.++++++++|++||||.+||||..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 489 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~d 489 (720)
+||+|||||||+|.++.||..+|++|++.|++++++..++++..+|+.|+||+|+||+|++|+|++.|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccCccc-ccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHHHHHH
Q 005003 490 IDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFA 568 (720)
Q Consensus 490 l~~Al~~v~~~~~~~~~-~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~ 568 (720)
|++|++++++|++++.. .++++++.+||||+|||+++++++++++|+|+||+|||+++|||++.|.+|+.++||.++++
T Consensus 383 i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~ 462 (596)
T COG0465 383 IEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLD 462 (596)
T ss_pred hHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHH
Confidence 99999999999999875 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhcccccHHHHHH
Q 005003 569 RIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAED 647 (720)
Q Consensus 569 ~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~ 647 (720)
+|+++||||||||++||. ++||||+||+++||++|+.||++||||+ +||+.|...++ -|+++....+++|+++++.
T Consensus 463 ~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~ 539 (596)
T COG0465 463 RIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEG--VFLGRYQKAKNYSEETAQE 539 (596)
T ss_pred HHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhccc--ccccccccccCccHHHHHH
Confidence 999999999999999998 8999999999999999999999999998 99999987544 3775544777899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005003 648 IDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 700 (720)
Q Consensus 648 id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 700 (720)
||.||++++++||++|+++|.+|++.++.+++.|+|+|||+++||.+|+....
T Consensus 540 ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 540 IDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999997654
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-108 Score=888.55 Aligned_cols=442 Identities=54% Similarity=0.819 Sum_probs=422.8
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
...+...+++|+||.|+|++|++|+|+|++|++|++|.++|.+.||||||+||||||||+||||+|+|+++|||+.++++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
|-++|+|++++++|++|..|++++||||||||||++|.+|.... ..+..+++||||.+||||..+.+||||+|||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 99999999999999999999999999999999999999986532 227899999999999999999999999999999
Q ss_pred CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 005003 406 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 485 (720)
Q Consensus 406 ~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~I 485 (720)
+.||+||.||||||++|.+|.||.++|.+||+.|+.++.+..++|+..||+.|+||+||||+|+||.|++.|+..|...|
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~V 529 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMV 529 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCccCccc-ccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHH
Q 005003 486 SSKEIDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 564 (720)
Q Consensus 486 t~~dl~~Al~~v~~~~~~~~~-~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~ 564 (720)
++.|++.|.+++++|++++.+ ++++.++++||||.|||||+..+.++.|++|+||.|||.++|.+.++|+.|.+..||.
T Consensus 530 tM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~ 609 (752)
T KOG0734|consen 530 TMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKA 609 (752)
T ss_pred cHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHH
Confidence 999999999999999999875 5888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhcccccHH
Q 005003 565 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEK 643 (720)
Q Consensus 565 ~l~~~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~~~~~~~~~s~~ 643 (720)
++++++.+|||||+|||++||.+++|+||+|||++||++|++||++||||+ +||+.+..... ..+++..
T Consensus 610 q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~----------~~s~~~~ 679 (752)
T KOG0734|consen 610 QLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN----------SSSLSPR 679 (752)
T ss_pred HHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC----------CCCCCch
Confidence 999999999999999999999999999999999999999999999999998 99998876222 2457888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005003 644 LAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 700 (720)
Q Consensus 644 ~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 700 (720)
+...||.||+++|+++|+||+.||+.|...+++||++||++|||+++||++++.+..
T Consensus 680 t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~ 736 (752)
T KOG0734|consen 680 TQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKS 736 (752)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccc
Confidence 899999999999999999999999999999999999999999999999999998763
No 3
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.3e-102 Score=894.40 Aligned_cols=584 Identities=67% Similarity=1.042 Sum_probs=517.7
Q ss_pred CCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEecCcccCCceeEEEEEcCCCcHHHHHHHHhcCcceeeccCCCccc
Q 005003 117 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSG 196 (720)
Q Consensus 117 ~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~ 196 (720)
.+.++++||+|++++++|+|++|.+.+++....+....++.+....++++..|..++++++.|.++++++...+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 124 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLK-- 124 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCcc--
Confidence 455679999999999999999999986654332322222212233556777775678999999999999998765443
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCCCccccccchHHHHHHHHHHHHh
Q 005003 197 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL 276 (720)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l 276 (720)
++|...+.++++|++++++++|++.+.....+++ ....++++++++++.......++|+||+|.+++|+++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~l 202 (638)
T CHL00176 125 SNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGP--GQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFL 202 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--cccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHH
Confidence 5677777777777777766655444432211111 12357899999888877788899999999999999999999999
Q ss_pred cCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEc
Q 005003 277 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 356 (720)
Q Consensus 277 ~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfID 356 (720)
++++.|..+|.++|+|+||+||||||||++|+++|+++++||+++++++|.+++.|.+..+++++|+.|+..+|||||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHH
Q 005003 357 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 436 (720)
Q Consensus 357 EID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL 436 (720)
|||.++.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+||
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 99999988887777778889999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhh
Q 005003 437 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA 516 (720)
Q Consensus 437 ~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA 516 (720)
+.|+++..+..++++..+|..+.|||++||+++|++|++.|.++++..|+++|+++|++++..|.+++...++++++++|
T Consensus 363 ~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA 442 (638)
T CHL00176 363 KVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIA 442 (638)
T ss_pred HHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHH
Confidence 99999988888899999999999999999999999999999999999999999999999999998877666778899999
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHHHHHHHHHHhhchhhhhhhhcCCCCcccCcchH
Q 005003 517 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 596 (720)
Q Consensus 517 ~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAEe~~fg~~~~t~Ga~~D 596 (720)
|||+||||+++++++.++|++|||+|||+++||+++.|.++..++||.+|+++|+++|||||||+++||++++|+||+||
T Consensus 443 ~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~D 522 (638)
T CHL00176 443 YHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASND 522 (638)
T ss_pred HHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccCCCCchhhHH-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005003 597 LQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM-RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAID 675 (720)
Q Consensus 597 l~~At~lA~~mv~~~Gm~~~g~~~~~~~~~~g~~~~-~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~ 675 (720)
|++||+||++||++||||++||+.+...+....|++ .+.....+|++++..||.||++++++||++|+++|++||+.|+
T Consensus 523 l~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~ 602 (638)
T CHL00176 523 LQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLID 602 (638)
T ss_pred HHHHHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999876332123553 3445678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005003 676 KIVEVLLEKETMSGDEFRAILSEFVEIPA 704 (720)
Q Consensus 676 ~la~~Lle~etL~g~ei~~il~~~~~~~~ 704 (720)
+||++|+|+|||+|+||++|++++...|+
T Consensus 603 ~la~~Lle~Etl~~~ei~~il~~~~~~~~ 631 (638)
T CHL00176 603 LLVELLLQKETIDGDEFREIVNSYTILPP 631 (638)
T ss_pred HHHHHHHHhCccCHHHHHHHHhhcCCCCC
Confidence 99999999999999999999988765444
No 4
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-100 Score=875.01 Aligned_cols=576 Identities=55% Similarity=0.851 Sum_probs=487.0
Q ss_pred CccccHHHHH-HHHhcCCeeEEEEeeCCeEEEEEecCcccCC--ceeEEEEEcCCCcHHHHHHHHh----cCcce-eecc
Q 005003 119 SSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQLPGLSQELLQKFRE----KNIDF-AAHN 190 (720)
Q Consensus 119 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~----~~v~~-~~~~ 190 (720)
..+++|.+|+ ++++.|.|.++.+...-....+......... ....+...+-. .+.+.+++.. -+++. ...+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4589999997 7899999999888642222222221111100 11222222221 2333333332 23321 1111
Q ss_pred CCCccccchhhhhhhhHHH-HHHHHHHHHHHhhcCC-CCCCCCCCCCccccccccc--ccccccCCCCCccccccchHHH
Q 005003 191 AQEDSGSLLFNLIGNLAFP-LILIGGLFLLSRRSSG-GMGGPGGPGFPLAFGQSKA--KFQMEPNTGVTFDDVAGVDEAK 266 (720)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dI~G~de~k 266 (720)
.... ....+......++| ++.++.++++.|++.+ +.+++++..+++.|+.++. ++..+..++++|.||+|++++|
T Consensus 242 V~~~-~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 242 VTYI-SESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eEEe-ecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 1111 11122222333455 7777878888887764 1223444445566666655 6777788889999999999999
Q ss_pred HHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHH
Q 005003 267 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK 346 (720)
Q Consensus 267 ~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~ 346 (720)
++|.|+|.+|++|++|.++|+++|||+||+||||||||+||||+|+|+++||+.+++++|+++++|.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEccchhccccc-CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeec
Q 005003 347 ENAPCIVFVDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r-~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~ 425 (720)
.++||||||||||+++++| +.+.+++++++++++||||.+||||....+|+|+|+||+++.||+||+|||||||+|.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 9999999999999999999 445668899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCc
Q 005003 426 VPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT 504 (720)
Q Consensus 426 ~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~ 504 (720)
+|+..+|.+|++.|+++.++. +++++..+|.+|+||+|+||.|+||+|++.|+|++...|+..|+++|+++++.|.+.+
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999999999999985 7788999999999999999999999999999999999999999999999999998876
Q ss_pred c-cccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHHHHHHHHHHhhchhhhhhhh
Q 005003 505 V-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVI 583 (720)
Q Consensus 505 ~-~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAEe~~ 583 (720)
. ..+.++++.+||||+|||+++|++++.+|+.+|+|+| |+++||+++.|.++ +++|+++|+++||+.||||||||++
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~ 638 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVV 638 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHHHHHHHHHHhCcchhhhee
Confidence 5 4578899999999999999999999999999999999 66999999999877 8999999999999999999999999
Q ss_pred cCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhcccccHHHHHHHHHHHHHHHHHHHHH
Q 005003 584 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEI 662 (720)
Q Consensus 584 fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~ 662 (720)
|| +++||||.+||++||++|+.||++|||++ +|++++.... .+++...+++|+.+++.||.||++++..||++
T Consensus 639 fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~-----~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~ 712 (774)
T KOG0731|consen 639 FG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLL-----PGDESFRKPYSEKTAQLIDTEVRRLVQKAYER 712 (774)
T ss_pred cC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcc-----cccccccCccchhHHHHHHHHHHHHHhhHHHH
Confidence 99 68999999999999999999999999998 9999984311 12334568999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005003 663 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPA 704 (720)
Q Consensus 663 A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~ 704 (720)
|.++|++|++.+++||+.||+||+|+++|+.+++..++..+.
T Consensus 713 ~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 713 TKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 999999999999999999999999999999999998876664
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.2e-93 Score=830.79 Aligned_cols=596 Identities=47% Similarity=0.751 Sum_probs=517.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeEEEEEecCcccCCceeEEEEE
Q 005003 88 RGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 167 (720)
Q Consensus 88 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (720)
++.+.|++++++++.++..+... ......++|+.|.+.+.++.+.++.+..+ .+ +....+ ...+...
T Consensus 3 ~~~L~~i~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~-tI---K~~~~e----~~~~~~~ 69 (644)
T PRK10733 3 KNLILWLVIAVVLMSVFQSFGPS-----ESNGRKVDYSTFLQEVNQDQVREARINGR-EI---NVTKKD----SNRYTTY 69 (644)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC-----CCCcccCCHHHHHHHHHcCCeEEEEEeCC-EE---EEEEcC----CceEEEe
Confidence 46677877766666555444321 12345799999999999999999988532 22 111111 1234444
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCccccchhhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccc
Q 005003 168 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 247 (720)
Q Consensus 168 ~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 247 (720)
.|..++.+...+.++++.+........ +++..++..+.+.++++|+++++.++++.+ +....+.|+++...+.
T Consensus 70 ~~~~~~~l~~~l~~~~v~~~~~~~~~~--~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-----~~~~l~af~~~~~~~~ 142 (644)
T PRK10733 70 IPVNDPKLLDNLLTKNVKVVGEPPEEP--SLLASIFISWFPMLLLIGVWIFFMRQMQGG-----GGKGAMSFGKSKARML 142 (644)
T ss_pred CCCCCHHHHHHHHHcCCeEEecCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCceeEEecccccccc
Confidence 565567899999999999887654432 445555555556666677777777766543 1234678888888877
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.+.....+|+|+.|.+.+++++.+++++++++..|..++..+|+|+||+||||||||++|+++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
+.+.|.+...++++|..++..+||||||||+|+++.+|+.+.++++++..+++|++|.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999999877777888899999999999999999999999999999999
Q ss_pred cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 005003 408 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 487 (720)
Q Consensus 408 LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~ 487 (720)
+|++++||||||++|.+++||.++|.+||+.|+++.++..++++..+++.|.||||+||.++|++|+..|+++++..|+.
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccCcc-cccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHHHH
Q 005003 488 KEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQL 566 (720)
Q Consensus 488 ~dl~~Al~~v~~~~~~~~-~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l 566 (720)
.|+++|++++..+.+++. ..++++++.+||||+|||+++++++..+++++|+|+|||.++||+++.|.++....||.+|
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l 462 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKL 462 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHH
Confidence 999999999999887654 3467789999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHH-hhhhcccccHHH
Q 005003 567 FARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNSMSEKL 644 (720)
Q Consensus 567 ~~~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~-~~~~~~~~s~~~ 644 (720)
+++|+++|||||||+++||++++|+||+|||++||+||++||++||||+ +||+.|...+. ..|++ .+...+.+|+++
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~-~~~lg~~~~~~~~~s~~~ 541 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEG-EVFLGRSVAKAKHMSDET 541 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhccccc-ccccccccccccccCHHH
Confidence 9999999999999999999888999999999999999999999999998 99999865222 13553 244567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q 005003 645 AEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPA 704 (720)
Q Consensus 645 ~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~ 704 (720)
++.||+||++++++||++|+++|++||+.|++||++|+|+|||+++||++|+.++...|+
T Consensus 542 ~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~~~~~ 601 (644)
T PRK10733 542 ARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRDVRPP 601 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999987643333
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.1e-83 Score=731.30 Aligned_cols=490 Identities=60% Similarity=0.955 Sum_probs=443.3
Q ss_pred hhhhhhhhHHHHHHHH-HHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCCCccccccchHHHHHHHHHHHHhc
Q 005003 199 LFNLIGNLAFPLILIG-GLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 277 (720)
Q Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~ 277 (720)
|.+++.++.+|+++++ +|+++.++..++ | +..+.+++++.++..++.++++|+||+|.+++|+++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----G--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 3455555566555554 455555555542 1 33467889999999888899999999999999999999999999
Q ss_pred CchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEcc
Q 005003 278 KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 278 ~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDE 357 (720)
+++.|...|.++|+|+|||||||||||++|+++|+++++||+.++++++.+.+.|.+.+.++++|+.|+..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHH
Q 005003 358 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 437 (720)
Q Consensus 358 ID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~ 437 (720)
||.++.+++.+.++.+++..+++++||.+||++..+.+++||+|||+|+.+|++++||||||+.|++++|+.++|.+|++
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 99999888776566677888999999999999988889999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcc-cccCCccchhh
Q 005003 438 VHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVA 516 (720)
Q Consensus 438 ~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~-~~~~~~k~~vA 516 (720)
.++++..+..++++..++..+.|||++||+++|++|+..|.++++..|+.+|++.|++++..+...+. ..++++++.+|
T Consensus 236 ~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A 315 (495)
T TIGR01241 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVA 315 (495)
T ss_pred HHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 99998888788899999999999999999999999999999999999999999999999998876653 34677899999
Q ss_pred HHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHHHHHHHHHHhhchhhhhhhhcCCCCcccCcchH
Q 005003 517 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 596 (720)
Q Consensus 517 ~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAEe~~fg~~~~t~Ga~~D 596 (720)
+||+||||++++++..+++++++|.|||.++||+++.|.++....|+.+++++|+++|||||||+++|| ++|+|+++|
T Consensus 316 ~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G--~~s~Ga~~D 393 (495)
T TIGR01241 316 YHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFG--EVTTGASND 393 (495)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhc--CCCCCchHH
Confidence 999999999999998899999999999999999999998888899999999999999999999999999 489999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHH-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005003 597 LQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAI 674 (720)
Q Consensus 597 l~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~-~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l 674 (720)
|++||++|+.||.+|||++ +|++.+..... ..+++ .+...+++|+.++..||.||++++++||++|+++|++||+++
T Consensus 394 l~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~-~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l 472 (495)
T TIGR01241 394 IKQATNIARAMVTEWGMSDKLGPVAYGSDGG-DVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDEL 472 (495)
T ss_pred HHHHHHHHHHHHHHhCCCcccCceeeccCcc-ccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998 99998865221 12332 223456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCHHHHHHHHh
Q 005003 675 DKIVEVLLEKETMSGDEFRAILS 697 (720)
Q Consensus 675 ~~la~~Lle~etL~g~ei~~il~ 697 (720)
++||++|+++|+|+++||++|++
T Consensus 473 ~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 473 ELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHcCeeCHHHHHHHhC
Confidence 99999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-62 Score=513.06 Aligned_cols=260 Identities=45% Similarity=0.768 Sum_probs=252.3
Q ss_pred ccccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 243 ~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
-..+..+..|+++|+||.|+++++++++|.|+. +++|+.|..+|+++|+|||||||||||||+||||+|++.++.|+.+
T Consensus 137 V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 137 VSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred hheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe
Confidence 344567788999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 322 SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 322 s~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
.+|+|+.+|+|++++.+|++|+.|+.++||||||||||+++.+|.....+++.|.++++.+||.+||||.+..+|-||+|
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred eCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 402 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 402 TN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
||+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+..++|++.+|+.+.|+|||||+++|.||.+.|.|+.
T Consensus 297 TNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 297 TNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred cCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHcCcc
Q 005003 482 KAAISSKEIDDSIDRIVAGME 502 (720)
Q Consensus 482 ~~~It~~dl~~Al~~v~~~~~ 502 (720)
+..||++||.+|++++.....
T Consensus 377 R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 377 RDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred cCeecHHHHHHHHHHHHhccc
Confidence 999999999999999987543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.3e-55 Score=531.90 Aligned_cols=308 Identities=19% Similarity=0.310 Sum_probs=265.6
Q ss_pred hhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH------------------------------
Q 005003 281 RFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF------------------------------ 330 (720)
Q Consensus 281 ~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~------------------------------ 330 (720)
.+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34678999999999999999999999999999999999999999998643
Q ss_pred -------------hhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---CCC
Q 005003 331 -------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNT 394 (720)
Q Consensus 331 -------------~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---~~~ 394 (720)
.+++..+++.+|+.|++++||||||||||+++.+ +....++++|+.+||+.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCC
Confidence 1223445899999999999999999999999754 223346899999999864 456
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHh--hcCCCCccc-ccHHHHHHhCCCCcHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH--GSNKKFDAD-VSLDVIAMRTPGFSGADLANLLN 471 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~--l~~~~l~~d-vdl~~LA~~t~G~SgadL~~lv~ 471 (720)
+|+||||||+|+.|||||+||||||+.|+|+.|+..+|++++..+ .++..+..+ ++++.+|+.|+|||||||+++||
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999998864 444555433 57999999999999999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecC------Cc
Q 005003 472 EAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR------GQ 545 (720)
Q Consensus 472 eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~pr------g~ 545 (720)
||+..|+++++..|+.++++.|++++++|.+.+.. ...++ .+++||+||||++.++++.+|+++|||+++ |.
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~-~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~ 1929 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR-SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGD 1929 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc-Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcc
Confidence 99999999999999999999999999999876533 22333 479999999999999999999999999632 45
Q ss_pred cceeEEeecCCCCCCccHHHHHHHHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC
Q 005003 546 ARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE 615 (720)
Q Consensus 546 a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~ 615 (720)
++||+|+.|.+ +.++|.+++.+|++||||||||++||+... .|+.||+.|||+|
T Consensus 1930 ~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vE 1983 (2281)
T CHL00206 1930 SYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVE 1983 (2281)
T ss_pred cceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchh
Confidence 77999999865 799999999999999999999999997532 4677777777764
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-50 Score=446.77 Aligned_cols=249 Identities=45% Similarity=0.774 Sum_probs=236.7
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.+.++++|+||+|++++|++|++.|.+ +++|+.|.++|+.+|||||||||||||||++|||+|++++++|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 467899999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
++|+|++++.++++|++|++.+|||||+||||+++..|+... +....+++++||++|||+....+|+||||||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 999999999999999999999999999999999999997322 26678999999999999999999999999999999
Q ss_pred cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC--Ccc
Q 005003 408 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK--AAI 485 (720)
Q Consensus 408 LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~--~~I 485 (720)
||+||+||||||+.|+|++||.+.|.+||+.++++.++.+++|++.||+.|.|||||||.++|++|+..|.++.- ..|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854 579
Q ss_pred CHHHHHHHHHHHHcC
Q 005003 486 SSKEIDDSIDRIVAG 500 (720)
Q Consensus 486 t~~dl~~Al~~v~~~ 500 (720)
+.+||++|+..+...
T Consensus 663 ~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPS 677 (693)
T ss_pred cHHHHHHHHHhhccc
Confidence 999999999875433
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-48 Score=392.58 Aligned_cols=324 Identities=34% Similarity=0.576 Sum_probs=288.2
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCccccchhhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccc
Q 005003 168 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 247 (720)
Q Consensus 168 ~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 247 (720)
+|-....+++...++.-.+.+.. ..++++.+++.+.--++-..+.+.+++.++.-.. -.|...+.|-.-+.
T Consensus 75 vplvigqfle~vdqnt~ivgstt----gsny~vrilstidrellkps~svalhrhsnalvd-----vlppeadssi~ml~ 145 (408)
T KOG0727|consen 75 VPLVIGQFLEAVDQNTAIVGSTT----GSNYYVRILSTIDRELLKPSASVALHRHSNALVD-----VLPPEADSSISMLG 145 (408)
T ss_pred cchHHHHHHHhhhccCceeeccc----CCceEEeehhhhhHHHcCCccchhhhhcccceee-----ccCCcccccccccC
Confidence 34334567777766655444322 2378899998887777777888888888765321 12334444555555
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
...+|++++.||.|+|-+|++++|.++. +.+.+.|++.|+++|+|||+|||||||||+||+|+|+.....|+.+.+|+|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 6678999999999999999999999997 888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
+.+|.|++++.+|++|..|+.++|+||||||||++..+|-....+.+.+.++++.+||++||||....+|-||.+||+.+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 486 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It 486 (720)
.|||||+||||+||.|+||+||..+++-++.....++.+.+++|++.+..+.+..|++||..+|++|.+.|.|.++-.|.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl 385 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVL 385 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 005003 487 SKEIDDSIDRIVAG 500 (720)
Q Consensus 487 ~~dl~~Al~~v~~~ 500 (720)
..||+++...+...
T Consensus 386 ~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 386 QKDFEKAYKTVVKK 399 (408)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999876543
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-47 Score=420.53 Aligned_cols=247 Identities=44% Similarity=0.756 Sum_probs=230.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
-|+++|+||.|+++++.+|...|.+ +++|+.|+++|+..|.|||||||||||||+||||+|+|++.+|+.|.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4789999999999999999997766 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
|+|++++.+|.+|..|+..+|||||+||+|++.++|+.+ +.....+++||||.+|||...+.+|.||||||+||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~---~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE---GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC---CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 999999999999999999999999999999999999864 35567889999999999999999999999999999999
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhc--CCCCcccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHhC----
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRRG---- 481 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~--~~~l~~dvdl~~LA~~t~--G~SgadL~~lv~eAa~~A~r~~---- 481 (720)
||++||||||+.+++++|+.++|.+||+.+.+ +.+++.|+|++.||+.+. |||||||..+|++|...|.++.
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 778899999999999887 9999999999999999998752
Q ss_pred ------------CCccCHHHHHHHHHHHHcC
Q 005003 482 ------------KAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 482 ------------~~~It~~dl~~Al~~v~~~ 500 (720)
...++..||++|+.++.+.
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 1236777999999887544
No 12
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-48 Score=398.34 Aligned_cols=320 Identities=33% Similarity=0.577 Sum_probs=283.2
Q ss_pred HHHHHHHHhcCcceeeccCCCccccchhhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccCC
Q 005003 173 QELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNT 252 (720)
Q Consensus 173 ~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 252 (720)
..+.+.+.++...|.... ...|++++++.+..-++-.|+.+++..+.....|-..+...||. .-+..++.|
T Consensus 110 g~leEiidd~haivst~~----g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv-----~vmK~eKaP 180 (440)
T KOG0726|consen 110 GTLEEIIDDNHAIVSTSV----GSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMV-----SVMKVEKAP 180 (440)
T ss_pred ccHHHHhcCCceEEeccc----CchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccc-----eeeecccCc
Confidence 344444544444443322 12578889988888888899888887776544332222223332 224456778
Q ss_pred CCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHh
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~ 331 (720)
.-+|.|+.|++.+.++++|.++. +.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.+|.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 88999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchh
Q 005003 332 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA 411 (720)
Q Consensus 332 G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~A 411 (720)
|.+++.+|++|+.|..++|+|+||||||++|.+|-...+++..+.++++.+||+++|||.++.+|-||.|||+.+.||||
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa 340 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 340 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred hcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 412 LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 412 LlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
|+||||+||.|+|+.||...++.|+..|..++.+..+++++.+......+|||||..+|.+|.++|.|+.+..++++||.
T Consensus 341 LiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ 420 (440)
T KOG0726|consen 341 LIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFK 420 (440)
T ss_pred hcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHcCc
Q 005003 492 DSIDRIVAGM 501 (720)
Q Consensus 492 ~Al~~v~~~~ 501 (720)
.|.++++...
T Consensus 421 ka~e~V~~~K 430 (440)
T KOG0726|consen 421 KAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-47 Score=383.27 Aligned_cols=267 Identities=41% Similarity=0.711 Sum_probs=254.7
Q ss_pred cccccccccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC
Q 005003 238 AFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV 316 (720)
Q Consensus 238 ~~~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~ 316 (720)
....|..-+.++..|+++++|+.|+.++.+.++|+++. +-+|++|.++|+.+|+|||||||||||||+.|||+|+..+.
T Consensus 158 kidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 158 KIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred CCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 45566667778899999999999999999999999997 88999999999999999999999999999999999999999
Q ss_pred CEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcE
Q 005003 317 PFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI 396 (720)
Q Consensus 317 pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~V 396 (720)
.|+.+-+|+++.+|+|++++.+|++|+.|+....||||+||||++|+.|-....+++.+.+++..+|+.++|||.+++++
T Consensus 238 cfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 238 CFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred eEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCe
Confidence 99999999999999999999999999999999999999999999999997766677889999999999999999999999
Q ss_pred EEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005003 397 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAIL 476 (720)
Q Consensus 397 iVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~ 476 (720)
-|+.+||+|+.|||||+||||+||.++|.+||.++|..|++.|.+.+..+.++-++.+|+.++..+|++|+.+|.+|.+.
T Consensus 318 kvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 318 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred EEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHHcCccCc
Q 005003 477 AGRRGKAAISSKEIDDSIDRIVAGMEGT 504 (720)
Q Consensus 477 A~r~~~~~It~~dl~~Al~~v~~~~~~~ 504 (720)
|++..+...|..||.+|+++++.|-.+-
T Consensus 398 airarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998876543
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-47 Score=381.44 Aligned_cols=258 Identities=40% Similarity=0.709 Sum_probs=248.8
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
+..++-|+-+++-+.|.|.+.++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+++|+...+.|+.+|++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 345677888999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
+++.+|.|++.+.+|++|-.|+.++|+|||.||||.+|..|..+.++++.+.+++..+||+++|||+...++-||.|||+
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 484 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~ 484 (720)
.+.|||||+||||+||.|+||+|+.+.|.+|++.|.++..+...+++..+|....|.||+++..+|.+|.++|.|+.+-.
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCccC
Q 005003 485 ISSKEIDDSIDRIVAGMEG 503 (720)
Q Consensus 485 It~~dl~~Al~~v~~~~~~ 503 (720)
+|++||+-|+.+++.....
T Consensus 376 vtqedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQKDSE 394 (404)
T ss_pred ccHHHHHHHHHHHHhcccc
Confidence 9999999999998765433
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-46 Score=378.83 Aligned_cols=257 Identities=38% Similarity=0.686 Sum_probs=245.2
Q ss_pred cccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 244 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 244 ~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
..+.....|.-+++||.|++.+.++|.|.+.. +.++++|.++|+++|+|+|+|||||||||++|||.|...+..|+.+.
T Consensus 158 kaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA 237 (424)
T KOG0652|consen 158 KAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA 237 (424)
T ss_pred ceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc
Confidence 33455667788999999999999999986655 89999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 323 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 323 ~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
+..++.+|+|.+++.+|+.|..|+..+||||||||+|++|.+|..+...++.+.+++..+||+++|||.++..|-||++|
T Consensus 238 gPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAAT 317 (424)
T KOG0652|consen 238 GPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAAT 317 (424)
T ss_pred chHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeec
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005003 403 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 482 (720)
Q Consensus 403 N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~ 482 (720)
|+.+.|||||+|+||+||.|+||.|+.+.|.+|++.|.++...+++++++.+|+.|++|+|++...+|-+|.+.|.|++.
T Consensus 318 NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 318 NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred ccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHcC
Q 005003 483 AAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 483 ~~It~~dl~~Al~~v~~~ 500 (720)
..|+.+||.+++..+...
T Consensus 398 tev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 398 TEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 999999999998877543
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-45 Score=401.47 Aligned_cols=228 Identities=46% Similarity=0.778 Sum_probs=217.0
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
+.++++|+||.|.+....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC----CcEEEEEEeCCC
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----TGIIVIAATNRA 405 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~----~~ViVIaaTN~p 405 (720)
+.|++++++|++|++|+..+|||+||||||+++++|.. .+.+-.++++.|||..||++... .+|+||+|||+|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999875 23445678999999999998654 579999999999
Q ss_pred CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 406 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 406 ~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||+.|+||.||||..+|.+|+..|.+|
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=379.42 Aligned_cols=254 Identities=42% Similarity=0.692 Sum_probs=239.0
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
..+..|+++|+||+|++.+|+++++.++. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34567889999999999999999999975 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+...|.|.+...++++|..|+..+||||||||||.++.+|.....+.+.+.++.+.+++.++|++....+++||+|||++
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998875544445567788999999999999888899999999999
Q ss_pred CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 005003 406 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 485 (720)
Q Consensus 406 ~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~I 485 (720)
+.+||+++||||||+.|++++|+.++|..||+.++.+..+..++++..++..|.||||+||.++|++|.+.|.++++..|
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 005003 486 SSKEIDDSIDRIVAG 500 (720)
Q Consensus 486 t~~dl~~Al~~v~~~ 500 (720)
+.+||.+|+.++..+
T Consensus 375 ~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 375 LPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998665
No 18
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=2.3e-43 Score=359.48 Aligned_cols=210 Identities=41% Similarity=0.638 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHcCccCc-ccccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHH
Q 005003 486 SSKEIDDSIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 564 (720)
Q Consensus 486 t~~dl~~Al~~v~~~~~~~-~~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~ 564 (720)
|++||++|+++++.|.+++ ...++++++++|+||+||||+++++++.++|.+|||+|||.++|++.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 6899999999999999885 456788999999999999999999999899999999999999999999999888889999
Q ss_pred HHHHHHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhH-HhhhhcccccH
Q 005003 565 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVI-MRMMARNSMSE 642 (720)
Q Consensus 565 ~l~~~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~-~~~~~~~~~s~ 642 (720)
+++++|+++|||||||+++||.+++|+|+++||++||+||++||.+||||+ +|++.+........|+ ..+....++|+
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999888999999999999999999999999998 9999876622211133 22344568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 005003 643 KLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 695 (720)
Q Consensus 643 ~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~i 695 (720)
.+...+|.+|+++|++||++|+++|++||+.|++||++|+++|+|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999986
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.6e-43 Score=352.17 Aligned_cols=242 Identities=38% Similarity=0.662 Sum_probs=225.4
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+..++++|+||+|++++|+.-+-++++|.+|++|..+ .|++||+|||||||||++|||+|+++++|++.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4457899999999999999999999999999998765 5889999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
.++|.++++++++|+.|++.+|||+||||+|+++-.|....-.+ ....++|.||.+|||...+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999987765432222 2457899999999999999999999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHhCCCccCH
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA-NLLNEAAILAGRRGKAAISS 487 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~-~lv~eAa~~A~r~~~~~It~ 487 (720)
|+++++ ||...|+|.+|+.++|..|++.++...++.-+.+++.+++.|.|+||+||. .++..|...|..++++.|+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 999999 999999999999999999999999999999999999999999999999996 57889999999999999999
Q ss_pred HHHHHHHHHH
Q 005003 488 KEIDDSIDRI 497 (720)
Q Consensus 488 ~dl~~Al~~v 497 (720)
+|++.|+.+.
T Consensus 346 edie~al~k~ 355 (368)
T COG1223 346 EDIEKALKKE 355 (368)
T ss_pred HHHHHHHHhh
Confidence 9999999873
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=386.22 Aligned_cols=249 Identities=39% Similarity=0.706 Sum_probs=224.5
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+-|+++|+||.|.+++|.++++.++. +++|+.|. .|.+...|||||||||||||++|||+|.|+...|+.+.+.++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 45899999999999999999999987 88888765 47787889999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--CCCcEEEEEEeCCCC
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRAD 406 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--~~~~ViVIaaTN~p~ 406 (720)
||+|++++.+|++|+.||..+|||||+||+|.+.++|+....+| .-..+++.|||.+||++. +..+|.||+||||||
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999998743322 346789999999999997 567899999999999
Q ss_pred ccchhhcCCCcccceeeecCCC-HHHHHHHHHHhhcCCCCcccccHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhC---
Q 005003 407 ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSNKKFDADVSLDVIAMRT-PGFSGADLANLLNEAAILAGRRG--- 481 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd-~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t-~G~SgadL~~lv~eAa~~A~r~~--- 481 (720)
.|||+|+||||||+.+++.+++ .+.+..+|+...++..++.++|+..+|+.+ +.|||||+-.+|-.|.+.|++|.
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884 566889999999999999999999999997 47999999999999999998762
Q ss_pred --------------CCccCHHHHHHHHHHHHcC
Q 005003 482 --------------KAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 482 --------------~~~It~~dl~~Al~~v~~~ 500 (720)
.-.|+++||.++.++..+.
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 1247889999998886443
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-42 Score=362.69 Aligned_cols=246 Identities=37% Similarity=0.623 Sum_probs=223.6
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
...+++.|+||+|+.++|+-|+|.|.. +..|+.|+. ..+|.||||++||||||||+||||+|.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 356789999999999999999998766 788876663 356789999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC-Cc---EEEEEEeC
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TG---IIVIAATN 403 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~-~~---ViVIaaTN 403 (720)
++|.|++++.+|-+|+.|+.++|++|||||||+|+.+|+.. +.++...++-++||.+|||.... ++ |.|+||||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 99999999999999999999999999999999999999763 56777889999999999998653 23 89999999
Q ss_pred CCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC-
Q 005003 404 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK- 482 (720)
Q Consensus 404 ~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~- 482 (720)
.|+.||.|++| ||...|+||+||.++|..+++..++.....++++++.++..++||||+||.++|++|.+.+.||.-
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred ----------------CccCHHHHHHHHHHHHc
Q 005003 483 ----------------AAISSKEIDDSIDRIVA 499 (720)
Q Consensus 483 ----------------~~It~~dl~~Al~~v~~ 499 (720)
..|++.||++|+.++..
T Consensus 439 g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 439 GLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred cCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 33777888888877643
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-40 Score=368.57 Aligned_cols=258 Identities=46% Similarity=0.754 Sum_probs=241.1
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
.....+.++|+||+|.+++++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34566789999999999999999998876 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+...|.|.+...++.+|+.++..+||||||||+|.++.+|.....++..+.++++.+++.+++++....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998876655555667788999999999999888899999999999
Q ss_pred CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 005003 406 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 485 (720)
Q Consensus 406 ~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~I 485 (720)
+.+|++++||||||+.|++++|+.++|.+||+.++++..+..++++..++..|.||+|+||+++|++|+..|.++++..|
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCccCc
Q 005003 486 SSKEIDDSIDRIVAGMEGT 504 (720)
Q Consensus 486 t~~dl~~Al~~v~~~~~~~ 504 (720)
+.+||.+|++++.......
T Consensus 361 ~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 361 TMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHhcccccc
Confidence 9999999999987765544
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.8e-42 Score=379.83 Aligned_cols=254 Identities=39% Similarity=0.705 Sum_probs=239.5
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
..+..|..+|+||.|++++++++.+.++. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 34567889999999999999999999975 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+...|.|.+...++.+|..|+.+.||||||||||.++.+|.....++..+.++++.++|.++|++....++.||+|||++
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998886655566677788999999999999888899999999999
Q ss_pred CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 005003 406 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 485 (720)
Q Consensus 406 ~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~I 485 (720)
+.+|++++||||||+.|+|+.||.++|.+||+.++.+..+..+++++.++..+.|+||+||.++|++|++.|.++++..|
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999898999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 005003 486 SSKEIDDSIDRIVAG 500 (720)
Q Consensus 486 t~~dl~~Al~~v~~~ 500 (720)
+.+||..|++++...
T Consensus 413 t~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 413 TQADFRKAKEKVLYR 427 (438)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998654
No 24
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=341.29 Aligned_cols=251 Identities=39% Similarity=0.673 Sum_probs=239.8
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
.+...+++|+++.|.-++..++++.++. +.+|+.|.++|+++|+|++||||||||||++|+++|...|+.|+.++.+++
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 4456678999999999999999998887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
++.|.|++++.+|+.|..|+...|||||+||||++++++.+.....+.+.++++..|+.+||+++....|-+|+|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 99999999999999999999999999999999999999876666678899999999999999999999999999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 486 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It 486 (720)
.|||+|+||||+|+.+++|+|+...|..|++.|.........++.+.+.+.++||+|+|+++.|+||-..|.+..+..+-
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005003 487 SKEIDDSIDRIV 498 (720)
Q Consensus 487 ~~dl~~Al~~v~ 498 (720)
++|+..++.++.
T Consensus 363 ~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 363 HEDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-39 Score=356.55 Aligned_cols=228 Identities=44% Similarity=0.755 Sum_probs=216.4
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+..++.|+||.|+.++|+.+++++++ -+.|..|.+.+.+.+.|||||||||||||+||-++|..++..|+.+.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 44569999999999999999999998 78899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
+|+|.++..+|++|..|+..+|||||+||+|.+.++|+....|- ..+++||||.+|||.+.-.||.|+|||.+||.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999998654433 467999999999999999999999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
||||+||||+|+.++.+.|+..+|.+|++...+....+.++|++.+|..|+|||||||..++..|.+.|..+
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888654
No 26
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.4e-38 Score=345.05 Aligned_cols=252 Identities=47% Similarity=0.780 Sum_probs=235.2
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
+.....+.++|+||+|.+++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 344567889999999999999999998875 7899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
++...+.|.+...++.+|+.++...||||||||+|.++.++.....++..+.++.+.+++.+++++....++.||+|||+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998877655455566778889999999999887789999999999
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 484 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~ 484 (720)
++.+|++++||||||+.|+++.|+.++|.+|++.++.+..+..++++..+++.+.||+|+||.++|++|+..|.++++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 005003 485 ISSKEIDDSIDRI 497 (720)
Q Consensus 485 It~~dl~~Al~~v 497 (720)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=361.74 Aligned_cols=245 Identities=48% Similarity=0.790 Sum_probs=229.1
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..+.++|+|++|.+++|+++++.+++ ++.++.|...|.++|+|+|||||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999988 78888899999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
+|+|++++.++.+|..|++.+||||||||+|++...|+... +....++++++|.+||+.....+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999998886532 222368999999999999999999999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC--CcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCcc
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-KAAI 485 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~--l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~-~~~I 485 (720)
|++++||||||+.+++++||.++|.+|++.|++... +..++++..+++.|.||+|+||..+|++|++.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4578999999999999999999999999999999988 7889
Q ss_pred CHHHHHHHHHHH
Q 005003 486 SSKEIDDSIDRI 497 (720)
Q Consensus 486 t~~dl~~Al~~v 497 (720)
+++||.+|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999883
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.1e-38 Score=374.55 Aligned_cols=247 Identities=45% Similarity=0.762 Sum_probs=228.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
.+.++|+||+|.+.+|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999986 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
|+|++++.++.+|..|+..+||||||||||.+++.|+... .....++.+++||.+||++....+++||+|||+|+.+|
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998876432 23346789999999999998888999999999999999
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 481 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~-------- 481 (720)
++++||||||+.+++++||.++|.+||+.+.++.++..+++++.+|+.|.||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred ----------CCccCHHHHHHHHHHHHc
Q 005003 482 ----------KAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 482 ----------~~~It~~dl~~Al~~v~~ 499 (720)
...|+.+||.+|+.++.+
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987543
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-37 Score=350.42 Aligned_cols=243 Identities=26% Similarity=0.445 Sum_probs=214.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
.++.+|+||+|++.+|+++.+....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 2345678999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch
Q 005003 331 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 331 ~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ 410 (720)
+|.++.+++.+|+.|+..+||||||||||.++.++... +......+++++++..|++ .+.+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999997654321 2234567888999998884 3567999999999999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc--ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHH
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD--ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 488 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~--~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~ 488 (720)
+++||||||+.+++++|+.++|.+||+.|+.+.... .+.+++.+++.|.||||+||+++|++|+..|..++ ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 999999999999999999999999999999886533 47889999999999999999999999999998766 468999
Q ss_pred HHHHHHHHHHcC
Q 005003 489 EIDDSIDRIVAG 500 (720)
Q Consensus 489 dl~~Al~~v~~~ 500 (720)
|+..|+.++.+-
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999887643
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=324.49 Aligned_cols=227 Identities=35% Similarity=0.632 Sum_probs=205.1
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
....|++.|+||+|++.+|+.|+|.|-. ++.|+.|.. +..+.+|+|||||||||||+||+|+|.|++-.||.+|.|++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3467899999999999999999997765 777877652 34567999999999999999999999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-CCcEEEEEEeCCC
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 405 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-~~~ViVIaaTN~p 405 (720)
+++|.|++++.++.+|+.|+++.|+||||||||.++..|+.+ .++...++-.++|.+|.|... +.+|+|++|||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999888653 455677888999999999855 5689999999999
Q ss_pred CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 406 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 406 ~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
+.||.|++| ||+++|+||+|+...|..+++.|+...+.. .+.|+..|++.|+||||+||.-+|++|.+.-.|+
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887654 4567999999999999999999999999888765
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=320.11 Aligned_cols=225 Identities=40% Similarity=0.640 Sum_probs=208.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhcc-CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g-~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.-.++|+||.|+++.++++++.|-. ++.|+.|..-+ .++|+|||||||||||||++|+|+|+++|.+|+.++.+.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 4468999999999999999998876 88898886333 358999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCc--EEEEEEeCCCC
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRAD 406 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~--ViVIaaTN~p~ 406 (720)
+|.|++.+.++.+|..|.+-.||||||||+|.+.+.|+ .+.++.....-+|+....||+.++.+ |+|+||||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999998884 34566777888999999999988766 99999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
.||.|++| |+-++++|++|+.++|.+||+..+++.++++++|+..+|+.|.||||.||.++|+.|+...+++
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999998774
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1e-34 Score=327.07 Aligned_cols=255 Identities=34% Similarity=0.588 Sum_probs=211.7
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-------
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------- 317 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p------- 317 (720)
+..+..|+++|+||+|++++++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 445677899999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred ---EEEEechhhHHHHhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc
Q 005003 318 ---FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 390 (720)
Q Consensus 318 ---f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~ 390 (720)
|+.++++++..+|.|++++.++.+|+.++.. .||||||||+|.++++|+.+ ..++....++++||.+||++
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--ccchHHHHHHHHHHHHhccc
Confidence 6677888999999999999999999998764 69999999999999887643 22344467889999999999
Q ss_pred cCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC-CCccc---------ccHHHHHH----
Q 005003 391 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-KFDAD---------VSLDVIAM---- 456 (720)
Q Consensus 391 ~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~-~l~~d---------vdl~~LA~---- 456 (720)
....+++||+|||+++.||||++||||||++|+|++|+.++|.+||+.++... ++..+ .+...+.+
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999998642 33111 11122211
Q ss_pred -------------------------hCCCCcHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCcc
Q 005003 457 -------------------------RTPGFSGADLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGME 502 (720)
Q Consensus 457 -------------------------~t~G~SgadL~~lv~eAa~~A~r~----~~~~It~~dl~~Al~~v~~~~~ 502 (720)
.++.+||++|+++|.+|...|..+ +...|+.+|+..|+..-....+
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 145678888888888888888765 4457888888888877654443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=315.77 Aligned_cols=279 Identities=36% Similarity=0.605 Sum_probs=243.8
Q ss_pred CCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
++++ +++.|.......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHhcC-CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 331 VGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 331 ~G~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
.|++++.+|..|+.|.+.+ |+||||||+|+++++|... .....++..|++..||+..+..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 9999999999999988642 2236678999999999999889999999999999999
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 489 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~d 489 (720)
++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..+|..+.||.|+||..+|++|...+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999887 8899
Q ss_pred HHHHHHHHHcCccCcccccCCccchhhHHHHH------HH---HHHhhcCCCCCcceeeeecCC
Q 005003 490 IDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVG------HA---ICGTLTPGHDPVQKVTLVPRG 544 (720)
Q Consensus 490 l~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaG------hA---vv~~~l~~~~~v~kvti~prg 544 (720)
+..|...+.+...+....+ ...+.+.++| .. -|.|-+.+.+...+..|.|..
T Consensus 409 ~~~A~~~i~psa~Re~~ve---~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk 469 (693)
T KOG0730|consen 409 FQEALMGIRPSALREILVE---MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK 469 (693)
T ss_pred HHHHHhcCCchhhhheecc---CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc
Confidence 9999988776665554321 1223344444 22 234555555556676666544
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-33 Score=302.92 Aligned_cols=280 Identities=33% Similarity=0.549 Sum_probs=227.9
Q ss_pred ccCCCCCccc--cccchHHHHHHHH--HHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-CEEEEec
Q 005003 249 EPNTGVTFDD--VAGVDEAKQDFME--VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISG 323 (720)
Q Consensus 249 ~~~~~~~f~d--I~G~de~k~eL~e--iv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-pf~~vs~ 323 (720)
...|+.+|++ |.|.+.....+-+ ....+-.|+.-.++|.+.-||+|||||||||||++||.|..-++. +--.+++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3457788887 4677665555433 444577788889999999999999999999999999999998864 4456899
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHh--------cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCc
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAKE--------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 395 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~~--------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ 395 (720)
.+..++|+|++++.+|.+|..|.+ ..-.||++||||+++++|++.. ++..-..+++||||..|||.+.-++
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999999843 1235999999999999998743 3344567899999999999999999
Q ss_pred EEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC----CCcccccHHHHHHhCCCCcHHHHHHHHH
Q 005003 396 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRTPGFSGADLANLLN 471 (720)
Q Consensus 396 ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~----~l~~dvdl~~LA~~t~G~SgadL~~lv~ 471 (720)
|+||+-||+.|.+|+||+|||||.-++++.+||.++|.+|++.|..++ .++.|+|+++||.+|..||||+|+.+|+
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999998664 4678999999999999999999999999
Q ss_pred HHHHHHHHhC---------------CCccCHHHHHHHHHHHHcCccCcc--cc----c---CCccchhhHHHHHHHHHHh
Q 005003 472 EAAILAGRRG---------------KAAISSKEIDDSIDRIVAGMEGTV--MT----D---GKSKSLVAYHEVGHAICGT 527 (720)
Q Consensus 472 eAa~~A~r~~---------------~~~It~~dl~~Al~~v~~~~~~~~--~~----~---~~~k~~vA~hEaGhAvv~~ 527 (720)
.|...|..|. +-.|+++||..|++.+.+...... +. . .....+....+-|.-+|+.
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~q 529 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQ 529 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHH
Confidence 9999997652 246899999999998765443221 00 0 1123445566667777765
Q ss_pred hc
Q 005003 528 LT 529 (720)
Q Consensus 528 ~l 529 (720)
.-
T Consensus 530 vk 531 (744)
T KOG0741|consen 530 VK 531 (744)
T ss_pred hh
Confidence 43
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.5e-31 Score=317.72 Aligned_cols=248 Identities=49% Similarity=0.768 Sum_probs=225.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
.++++|+||+|.+++++.+++.+.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999886 889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
+.|.....++.+|+.+....||||||||||.+..+++.. ......+++++|+..|+++.....++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~---~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV---TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC---cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998876542 12234568899999999998888999999999999999
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 481 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~-------- 481 (720)
++++|+|||++.+.++.|+.++|.+|++.+.+...+..+.++..++..+.||+++|+..++++|+..+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999888888899999999999999999999999999887652
Q ss_pred -----------CCccCHHHHHHHHHHHHcCc
Q 005003 482 -----------KAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 482 -----------~~~It~~dl~~Al~~v~~~~ 501 (720)
...++.+|+..|+..+.+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12578899999998776544
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.9e-31 Score=285.38 Aligned_cols=261 Identities=18% Similarity=0.215 Sum_probs=194.6
Q ss_pred CCCCcccc-ccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 252 TGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 252 ~~~~f~dI-~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
...+|+++ .|+--.+.-+..++..+... ....+|+++|++++||||||||||++|+++|+++|++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34578888 66666666665555332211 11236889999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHh-----cCCeEEEEccchhcccccCCCCCCCChHHHHH-HHHHHhhhcCc------------cC
Q 005003 331 VGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT-LNQLLTEMDGF------------EG 392 (720)
Q Consensus 331 ~G~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~-ln~LL~~ldg~------------~~ 392 (720)
+|++++.+|++|..|+. .+||||||||||+++++|+.. ......+. ..+|++.||+. ..
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~ 265 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEE 265 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 99999999999999975 469999999999999888632 12222344 47888888753 34
Q ss_pred CCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCC----CcHHHHHH
Q 005003 393 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG----FSGADLAN 468 (720)
Q Consensus 393 ~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G----~SgadL~~ 468 (720)
..+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+|++.++++..+. ..++..|+..++| |.||--..
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar 342 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRAR 342 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHH
Confidence 567999999999999999999999999864 5899999999999999988776 5778899998887 56776666
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHH
Q 005003 469 LLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICG 526 (720)
Q Consensus 469 lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~ 526 (720)
+..++...-+.+- -++..-.+++...+.........-.+-.+-|.||.++.
T Consensus 343 ~yd~~v~~~i~~~-------g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 343 VYDDEVRKWIAEV-------GVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHHh-------hHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6666654443321 12222233333222222222334456678899999986
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=312.91 Aligned_cols=252 Identities=35% Similarity=0.603 Sum_probs=221.0
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEec
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 323 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~ 323 (720)
....++|++|+|.+.++++|+|.|.. +-.|+.|..+++.+|+|||++||||||||+.|+++|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34578999999999999999998877 889999999999999999999999999999999999987 467888889
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
++..++|+|+.++.++.+|+.|++..|+|||+||||-+.+.|+.. .......++..||..|||+..++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999998887542 23335567888999999999999999999999
Q ss_pred CCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005003 404 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 482 (720)
Q Consensus 404 ~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~ 482 (720)
+|+.+||||+||||||+.+++++|+.+.|.+|+..|.++.... ...-+..+|+.+.||-|+||+.+|.+|++.+.++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998776522 222367899999999999999999999999988643
Q ss_pred ----------------CccCHHHHHHHHHHHHcCccCc
Q 005003 483 ----------------AAISSKEIDDSIDRIVAGMEGT 504 (720)
Q Consensus 483 ----------------~~It~~dl~~Al~~v~~~~~~~ 504 (720)
..|...||..|+.+..+...+.
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 2356677777777766655543
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.2e-30 Score=278.67 Aligned_cols=226 Identities=37% Similarity=0.580 Sum_probs=199.7
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..+++.|+|++|.+.+|+.+.+.+.+ +..|..|..+ ..+++|+||.||||||||+|++|+|.|++..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45679999999999999999999988 4447777644 245689999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC--CCcEEEEEEeCCCC
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 406 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~--~~~ViVIaaTN~p~ 406 (720)
+|+|++++.++.+|.-|+...|+|+||||+|.+..+|.. ..++...+...++|.++++... ++.|+||+|||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999988843 3456667788888888888754 45799999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC-CcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
.+|.+++| ||.+.++|++||.+.|..+|+..+.+.+ .-.+.+++.+++.|+|||+.||.++|.+|++--.+..
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 99999999 9999999999999999999999987763 2345679999999999999999999999987665543
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-21 Score=213.81 Aligned_cols=207 Identities=24% Similarity=0.346 Sum_probs=163.7
Q ss_pred CCccccccchHHHHHHHH-HHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh
Q 005003 254 VTFDDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~e-iv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G 332 (720)
-+|+.++=-.+.|+++.+ +.+|++..+-|++.|..--||.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 689999999999998877 667788899999999999999999999999999999999999999999988776432
Q ss_pred hchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCC---CCC-hHHHHHHHHHHhhhcCccCCC--cEEEEEEeCCCC
Q 005003 333 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG---GGN-DEREQTLNQLLTEMDGFEGNT--GIIVIAATNRAD 406 (720)
Q Consensus 333 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~---~~~-~e~~~~ln~LL~~ldg~~~~~--~ViVIaaTN~p~ 406 (720)
. ..++.++..+... +||+|.+||+-...+..... +.. ....-++..||+.+||..+.. .-|||.|||+++
T Consensus 274 -n-~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -D-SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -c-HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2 2377777766443 79999999997653322111 111 124468999999999998876 689999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC-CcccccHHHHHHhCCCCcHHHHHHH
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANL 469 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~LA~~t~G~SgadL~~l 469 (720)
.|||||+||||+|.+|++...+..+-+.+++.++.... ...-.+++.+...+. .||||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 99999999999999999999999999999999987643 111111333333333 699998654
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=6.4e-21 Score=202.96 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=162.1
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCc---eEEEEccCCChHHHHHHHHHHhc-------CCCEEEEechh
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 325 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~pr---gVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs~s~ 325 (720)
+++++|++++|+++++++.++..++.+...|...|+ +++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 358999999999999999887777777778876653 58999999999999999999875 23799999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+...|+|.++...+.+|+.+. ++||||||+|.+...++ .++.....++.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999988888888888763 47999999999964322 1234456777888888753 3568888887643
Q ss_pred C-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCC--ccccc---HHHHHHh--CCCC-cHHHHHHHHHH
Q 005003 406 D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF--DADVS---LDVIAMR--TPGF-SGADLANLLNE 472 (720)
Q Consensus 406 ~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l--~~dvd---l~~LA~~--t~G~-SgadL~~lv~e 472 (720)
. .++|++.+ ||+..|+|+.++.+++.+|++.++.+... .++.. .+.+.+. .+.| ++++++++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34689999 99999999999999999999999876443 22221 1222222 2333 48999999988
Q ss_pred HHHHHHHh
Q 005003 473 AAILAGRR 480 (720)
Q Consensus 473 Aa~~A~r~ 480 (720)
|...-..|
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 87665443
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=8.3e-21 Score=201.91 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=165.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcC---CceEEEEccCCChHHHHHHHHHHhcC-------CCEEEEechhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSISGSEF 326 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~---prgVLL~GPPGTGKT~LArAlA~e~g-------~pf~~vs~s~~ 326 (720)
++++|++++|+++.+++.++..++.+.+.|... ..+++|+||||||||++|+++|..+. .+|++++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 379999999999999999988888888888775 34899999999999999999988662 37999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC-
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA- 405 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p- 405 (720)
...+.|.+...++++|+.+. +++|||||+|.+.+.+. ..+.....++.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 99999988888888998874 47999999999854321 1234456777888888743 4578888887643
Q ss_pred -C---ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHHh-------CCCCcHHHHHHHHHHH
Q 005003 406 -D---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMR-------TPGFSGADLANLLNEA 473 (720)
Q Consensus 406 -~---~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~~-------t~G~SgadL~~lv~eA 473 (720)
+ .++|++.+ ||+..|+++.++.+++..|++.++.+....-+.+ ...+... ..-.++++++|+++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3 24899999 9999999999999999999999987754322211 2333332 2335789999999988
Q ss_pred HHHHHHh
Q 005003 474 AILAGRR 480 (720)
Q Consensus 474 a~~A~r~ 480 (720)
......|
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 7766543
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.3e-20 Score=197.87 Aligned_cols=213 Identities=19% Similarity=0.296 Sum_probs=160.4
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCC---ceEEEEccCCChHHHHHHHHHHhc-------CCCEEEEech
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 324 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~p---rgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs~s 324 (720)
.+++++|++++|+++++++.+..........|...+ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478999999999999999998766555555666543 478999999999999999999864 3478999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
++...++|.....++++|+.+. ++||||||+|.+.+. +..+.....++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998774 479999999999531 11223456778888888764 345677766544
Q ss_pred CC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHH---------hCCCCcHHHHHHH
Q 005003 405 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAM---------RTPGFSGADLANL 469 (720)
Q Consensus 405 p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~---------~t~G~SgadL~~l 469 (720)
.+ .++|++.+ ||+..++++.++.+++.+|++.++......-+.+ +..++. .....+++.+.|+
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 37889998 9998999999999999999999887654322211 233322 1123578889999
Q ss_pred HHHHHHHHHHh
Q 005003 470 LNEAAILAGRR 480 (720)
Q Consensus 470 v~eAa~~A~r~ 480 (720)
++.|......+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 98887666443
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=3.3e-21 Score=178.93 Aligned_cols=130 Identities=45% Similarity=0.774 Sum_probs=116.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcC-CeEEEEccchhcccccCCCCCC
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGG 371 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~ 371 (720)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.++++|..++... ||||||||+|.+..+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999987761 23
Q ss_pred CChHHHHHHHHHHhhhcCccCC-CcEEEEEEeCCCCccchhhcCCCcccceeeecC
Q 005003 372 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426 (720)
Q Consensus 372 ~~~e~~~~ln~LL~~ldg~~~~-~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~ 426 (720)
........+++|+..++..... .+++||++||.++.++++++| +||++.+++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4566778899999999987765 569999999999999999998 89999998864
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4e-20 Score=197.30 Aligned_cols=210 Identities=24% Similarity=0.380 Sum_probs=165.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHh
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~ 331 (720)
+.-.|++|+-....+..++.+...-.+.+. ...+-++|++|||||||||++||-||...|..+-.+.+.+..-. -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998876555543 22345689999999999999999999999999998888876432 2
Q ss_pred hhchHHHHHHHHHHHhcC-CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch
Q 005003 332 GVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 332 G~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ 410 (720)
.++...+..+|+.+++.. .-+|||||.|++.-.|... .-++.....+|.||-.-. +...+++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 234567889999997654 5689999999998777531 223446678999887543 23457999999999999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc------------------------c---cccHHHHHHhCCCCcH
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD------------------------A---DVSLDVIAMRTPGFSG 463 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~------------------------~---dvdl~~LA~~t~G~Sg 463 (720)
++-. |+|..|+|++|..++|.+++..|+.++... . +--+...|+.|.||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9999 999999999999999999998887543211 0 0115678899999999
Q ss_pred HHHHHHHHH
Q 005003 464 ADLANLLNE 472 (720)
Q Consensus 464 adL~~lv~e 472 (720)
++|..++--
T Consensus 579 REiakLva~ 587 (630)
T KOG0742|consen 579 REIAKLVAS 587 (630)
T ss_pred HHHHHHHHH
Confidence 999999854
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=1.7e-18 Score=175.66 Aligned_cols=193 Identities=28% Similarity=0.381 Sum_probs=129.6
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
.-.+.+|+|++|+++.+..+.-+++..+... ....++|||||||+|||+||+.+|++++++|..+++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 3456799999999999999988887654321 12337999999999999999999999999999998864321
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CC--------
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GN-------- 393 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~-------- 393 (720)
...+..++...+ ...||||||||.+ +...++. |+..|+++. .+
T Consensus 89 -----~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~---LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 89 -----AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEI---LLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHH---HHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred -----HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHH---HHHHhccCeEEEEeccccccceeeccC
Confidence 233444444443 3469999999999 3333444 455554432 11
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHHhCCCCcHHHHHHHHHH
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~~t~G~SgadL~~lv~e 472 (720)
..+.+|+||++...|.++|+. ||.-...+..++.++..+|++.......+.-+.+ ...+|+++.| +++-..++++.
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 248999999999999999999 9998889999999999999998877766553333 6788998887 67766677665
Q ss_pred HH
Q 005003 473 AA 474 (720)
Q Consensus 473 Aa 474 (720)
+.
T Consensus 225 vr 226 (233)
T PF05496_consen 225 VR 226 (233)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.3e-18 Score=192.70 Aligned_cols=209 Identities=24% Similarity=0.433 Sum_probs=174.1
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
+...--.+||+|+||||||++++++|.++|.+++.++|.++...-.+..+.++...|..|+...|||||+-++|.++..+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 34444579999999999999999999999999999999999998888889999999999999999999999999998544
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCcc-CCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 444 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg~~-~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~ 444 (720)
.. +..-...+.++.++. .|.+. +..+++||++|+..+.+++.+++ .|-..|.++.|+.++|.+||+.++....
T Consensus 507 dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 507 DG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred CC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 32 223334455555555 44444 45679999999999999999998 6777899999999999999999999999
Q ss_pred CcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH---HhC-----------------CCccCHHHHHHHHHHHHcC
Q 005003 445 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAG---RRG-----------------KAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 445 l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~---r~~-----------------~~~It~~dl~~Al~~v~~~ 500 (720)
++.++.+..++.++.||+.+|+..++..+-..+. .+. ...++++||.+++++....
T Consensus 581 ~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~ 656 (953)
T KOG0736|consen 581 LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE 656 (953)
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHh
Confidence 9999999999999999999999999877622221 111 1568999999999986543
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.79 E-value=4.7e-18 Score=184.31 Aligned_cols=220 Identities=25% Similarity=0.329 Sum_probs=163.5
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.+..+.+|++++|+++.++.+..++...+.+. .++.++||+||||||||++|+++|++++.++..++++.+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKRG-------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 34566799999999999999998887654321 34668999999999999999999999999988877654321
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh------cC-cc------CCCc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DG-FE------GNTG 395 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l------dg-~~------~~~~ 395 (720)
...+..++... ..+++|||||||.+.. ..++.+..+++.. +. .. .-.+
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 22344444433 3468999999999831 1222333332211 10 00 1134
Q ss_pred EEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005003 396 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAA 474 (720)
Q Consensus 396 ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~SgadL~~lv~eAa 474 (720)
+.+|++||++..++++|.+ ||...+.++.|+.+++.+|++..+......-+ ..+..+++.+.| +++.+.++++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7899999999999999988 99989999999999999999988766544322 236788888887 5688999999988
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 005003 475 ILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 475 ~~A~r~~~~~It~~dl~~Al~~v 497 (720)
..|..++...|+.+++..+++.+
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 88877777789999999998653
No 48
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-17 Score=190.33 Aligned_cols=220 Identities=44% Similarity=0.727 Sum_probs=197.8
Q ss_pred hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEE
Q 005003 276 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 276 l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfI 355 (720)
+..+..++.++..+|++++++||||||||++++++|.+ +..++.+++.+....+.|......+.+|..++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788899999999999999999999999999999 76668899999999999999999999999999999999999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHH
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 435 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~I 435 (720)
||+|.+.+.+.. .........+.+++..++++.... +++++.||++..+|+++.+||||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988765 233445678899999999988444 9999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHHcC
Q 005003 436 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------KAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 436 L~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~------~~~It~~dl~~Al~~v~~~ 500 (720)
+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999988888888899999999999999999999999999998885 3468899999999987653
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=8e-18 Score=180.00 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=154.9
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhc
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 334 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~ 334 (720)
+|+|++|+++.++++...+...+... ..+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 79999999999999998886543321 23568999999999999999999999999887776543221
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc----------------CCCcEEE
Q 005003 335 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------GNTGIIV 398 (720)
Q Consensus 335 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~----------------~~~~ViV 398 (720)
...+...+... ..+.+|||||+|.+.. ..+.. |+..|++.. ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHH---hhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11223333332 3467999999999832 12222 232222211 1234889
Q ss_pred EEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 399 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 399 IaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
|++||++..+++++++ ||...+.++.|+.+++.++++..+......- +..++.+++.+.| +++.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHH
Confidence 9999999999999998 9988899999999999999998876543332 2236788888887 4578889999888888
Q ss_pred HHhCCCccCHHHHHHHHHH
Q 005003 478 GRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~~ 496 (720)
...+...|+.+++..+++.
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 7777778999999999876
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.7e-17 Score=187.03 Aligned_cols=262 Identities=21% Similarity=0.240 Sum_probs=194.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhHHHHhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~~~~~G 332 (720)
.|++-...+|++..+ ..-.| ...+.++||+||+|+|||.|+++++.+. .+.+.+++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666666665443 22222 2224479999999999999999999987 456778999998776666
Q ss_pred hchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh-cCc-cCCCcEEEEEEeCCCCccch
Q 005003 333 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGF-EGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 333 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l-dg~-~~~~~ViVIaaTN~p~~LD~ 410 (720)
...+.++.+|..+.+++|+||++|++|.+....+. .++......+.++.+|.++ +.+ ..+..+.|||+.+....++|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 67778899999999999999999999999862222 2223333444445555332 222 33445799999999999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----CCCcc
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR----GKAAI 485 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~----~~~~I 485 (720)
-|.+|++|+-++.++.|+..+|.+||+..+.+.... ..-|++.++..|+||...||..++.+|...|... +...+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999988776522 1223566999999999999999999998888732 33478
Q ss_pred CHHHHHHHHHHHHcCccCccccc----CCccchhhHHHHHHHHHHhhc
Q 005003 486 SSKEIDDSIDRIVAGMEGTVMTD----GKSKSLVAYHEVGHAICGTLT 529 (720)
Q Consensus 486 t~~dl~~Al~~v~~~~~~~~~~~----~~~k~~vA~hEaGhAvv~~~l 529 (720)
|.++|.+++....+-.-+..... -....+-.+||+..++...+.
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHh
Confidence 99999999998876554443221 223456788999888876554
No 51
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=7e-18 Score=193.74 Aligned_cols=256 Identities=21% Similarity=0.270 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCC--CCCccc-ccc----cccccccccCCCCCccccccchHHHHHHHHHHHHhcCc
Q 005003 207 AFPLILIGGLFLLSRRSSGGMGGPGG--PGFPLA-FGQ----SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKP 279 (720)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~----s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p 279 (720)
++..++||.+||..-+.|.+....-. ....+. ..+ +-.+-+.++.++.+|++++|+++.++.++..+. .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~---~- 83 (531)
T TIGR02902 8 IIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC---G- 83 (531)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh---C-
Confidence 45667888888887777654210000 000000 000 001223456778999999999999988875431 1
Q ss_pred hhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEEechhh-------HHHHhhhch-------
Q 005003 280 ERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEF-------VEMFVGVGA------- 335 (720)
Q Consensus 280 ~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~vs~s~~-------~~~~~G~~~------- 335 (720)
..|.++||+||||||||++|+++...+ +.||+.++|+.. .+...+...
T Consensus 84 --------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~ 155 (531)
T TIGR02902 84 --------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGA 155 (531)
T ss_pred --------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccc
Confidence 224589999999999999999997642 468999998631 111111100
Q ss_pred ---------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc----------------
Q 005003 336 ---------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---------------- 390 (720)
Q Consensus 336 ---------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~---------------- 390 (720)
......+.. ....+|||||||.+. ... ++.|+..|+..
T Consensus 156 ~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~-----------~~~---q~~LL~~Le~~~~~~~~~~~~~~~~~~ 218 (531)
T TIGR02902 156 GPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELH-----------PVQ---MNKLLKVLEDRKVFLDSAYYNSENPNI 218 (531)
T ss_pred cccccCCcccccCchhhc---cCCcEEEEechhhCC-----------HHH---HHHHHHHHHhCeeeeccccccccCccc
Confidence 000112222 234699999999982 233 33444333210
Q ss_pred ----------cCCCcEEEE-EEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhC
Q 005003 391 ----------EGNTGIIVI-AATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRT 458 (720)
Q Consensus 391 ----------~~~~~ViVI-aaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t 458 (720)
..+.++.+| +|||.|+.++|++++ |+. .+.++.++.+++.+|++..+++..+.- +..++.++..+
T Consensus 219 ~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~ 295 (531)
T TIGR02902 219 PSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA 295 (531)
T ss_pred ccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh
Confidence 001234555 555679999999999 885 788888899999999999987665432 22256666655
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
. +++++.++++.|+..|..+++..|+.+|++.++..
T Consensus 296 ~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 296 S--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred h--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 4 89999999999999998888889999999999753
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.4e-18 Score=178.70 Aligned_cols=237 Identities=22% Similarity=0.274 Sum_probs=173.6
Q ss_pred ccccccchHHHHHHHHHHHH-hcCchhhhhcc-CcCCceEEEEccCCChHHHHHHHHHHhcC---------CCEEEEech
Q 005003 256 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 324 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g-~~~prgVLL~GPPGTGKT~LArAlA~e~g---------~pf~~vs~s 324 (720)
|+.++=-...|+++...+.. +.-.++-..-. +...|-+||+||||||||+|+||+|..+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66777777889888876543 22222111111 22345699999999999999999999763 468899999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhc---CCe--EEEEccchhcccccCCC-CCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKEN---APC--IVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~---~P~--ILfIDEID~l~~~r~~~-~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
.+.++|.+++-+.+..+|++.... ..| .++|||+++++..|.+. .+......-+++|.+|.+||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999887542 223 45599999999888443 333445567899999999999999999999
Q ss_pred EEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC-------------Cccccc-----HHHHHHh-CC
Q 005003 399 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------------FDADVS-----LDVIAMR-TP 459 (720)
Q Consensus 399 IaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~-------------l~~dvd-----l~~LA~~-t~ 459 (720)
++|+|-.+.+|.|+.. |-|-+.++.+|+...|.+|++.++.+.- ....+. ...+... +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999987754321 001111 1222222 58
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
|.||+-|+.+=-.|... .-....|+.+++..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHh--ccCCCccChHHHHHHHHH
Confidence 99999888765444322 223357888888777643
No 53
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.76 E-value=7.1e-18 Score=200.73 Aligned_cols=226 Identities=23% Similarity=0.339 Sum_probs=164.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+-++++++|.++..+.+.+++..- ...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4568999999999888766555321 13379999999999999999999987 6779999
Q ss_pred echhhH--HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEE
Q 005003 322 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 399 (720)
Q Consensus 322 s~s~~~--~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVI 399 (720)
+++.+. ..|.|+.+.+++.+|+.++...|+||||||||.+.+.+... ++... ..+.|...+. ++.+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~---~~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD---ASNLLKPALS----SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH---HHHHHHHHHh----CCCeEEE
Confidence 998887 47889999999999999988889999999999997654321 11111 2233333333 5679999
Q ss_pred EEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC----C-cccccHHHHHHhCCCCc-----HH
Q 005003 400 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----F-DADVSLDVIAMRTPGFS-----GA 464 (720)
Q Consensus 400 aaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~----l-~~dvdl~~LA~~t~G~S-----ga 464 (720)
++||..+ ..|+++.| ||+ .|+++.|+.+++.+|++....... + -.+..+..++..+..|- +.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999743 47999999 997 799999999999999997654321 1 12223555666554443 33
Q ss_pred HHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCc
Q 005003 465 DLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~----~~~~It~~dl~~Al~~v~~~~ 501 (720)
-.-.++++|+....-+ .+..|+.+|+..++.+...-+
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP 433 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIP 433 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCC
Confidence 3456777777654332 235699999999999875433
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=4.4e-17 Score=168.49 Aligned_cols=216 Identities=26% Similarity=0.347 Sum_probs=169.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
-++.+|+|.+|++++|+.++-.+..-+... ...-++|||||||.|||+||..+|+|+|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 346789999999999999998887755433 33458999999999999999999999999999988865432
Q ss_pred hhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------C--------CC
Q 005003 331 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------G--------NT 394 (720)
Q Consensus 331 ~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~--------~~ 394 (720)
+..+-.++.... ..+|+||||||++.+ ..++++ .-.|++|. + -.
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~-----------~vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSP-----------AVEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhcCh-----------hHHHHh---hhhhhheeEEEEEccCCccceEeccCC
Confidence 223344444433 347999999999942 233333 33454442 1 12
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~t~G~SgadL~~lv~eA 473 (720)
.+.+|+||.+...|...|+. ||.....+..++.++..+|+........+.-+. ....+|+++.| +++=..+++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 58999999999999999999 999999999999999999999887665554332 26778999987 788788899999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
.-.|.-++...|+.+-..+|++...
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHhC
Confidence 9999989999999999988888754
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=4.8e-17 Score=194.71 Aligned_cols=164 Identities=30% Similarity=0.410 Sum_probs=124.5
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH---------
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 327 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~--------- 327 (720)
+++.|++++|+.+.+.+...+... ...+.++||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 469999999999998766432211 11123699999999999999999999999999999876542
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC-----cc--------CCC
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 394 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg-----~~--------~~~ 394 (720)
..|+|....++...|..+....| ||||||||.+.+... ++ ..+.|+..+|. |. ...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CC-----HHHHHHHhcCHHhcCccccccCCceeccC
Confidence 24667777788888888866665 788999999974321 11 23445554442 11 124
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhh
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 440 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l 440 (720)
++++|+|||.++.++++|++ ||+ .|+++.|+.+++.+|++.++
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 78999999999999999999 996 88999999999999998876
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.73 E-value=3.4e-17 Score=193.77 Aligned_cols=225 Identities=22% Similarity=0.317 Sum_probs=163.4
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEEe
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSIS 322 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~vs 322 (720)
.-.++.++|.++..+++.+++..- .+.++||+||||||||++|+++|... ++.++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456889999999998888766542 12368999999999999999999864 45566666
Q ss_pred chhhH--HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEE
Q 005003 323 GSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 400 (720)
Q Consensus 323 ~s~~~--~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIa 400 (720)
.+.+. ..|.|..+.+++.+|+.+++..++||||||||.+.+.+.. .++......++..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L-------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLL-------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHH-------hCCCeEEEe
Confidence 66555 4577888999999999998888999999999999765432 111222222333333 256799999
Q ss_pred EeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccH-----HHHHHh-----CCCCcHHH
Q 005003 401 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL-----DVIAMR-----TPGFSGAD 465 (720)
Q Consensus 401 aTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl-----~~LA~~-----t~G~Sgad 465 (720)
+||.++ ..|++|.| ||+ .|.++.|+.+++..||+.+...+....++.+ ...+.. +..+-|..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999865 47999999 997 8999999999999999987665554444432 222222 23345667
Q ss_pred HHHHHHHHHHHHH----HhCCCccCHHHHHHHHHHHHcCc
Q 005003 466 LANLLNEAAILAG----RRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 466 L~~lv~eAa~~A~----r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
...++++|+...+ ...+..|+.+|+.+.+.+...-+
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 8889999986543 22345689999999998875443
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.7e-16 Score=170.95 Aligned_cols=203 Identities=29% Similarity=0.411 Sum_probs=142.0
Q ss_pred CCCCCccccccchHHHHH---HHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 251 NTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~e---L~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
-++.+++|++|++...-+ |...++.-. ..+++||||||||||++|+.||+..+.+|..+|..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~------------l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--- 82 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGH------------LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--- 82 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCC------------CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---
Confidence 356799999999987754 333333211 22699999999999999999999999999999973
Q ss_pred HHHhhhchHHHHHHHHHHHhcC----CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe-
Q 005003 328 EMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT- 402 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~----P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT- 402 (720)
-.+.+.+|.+++.|++.. ..||||||||.+-+. ....||-.++ ++.|++|+||
T Consensus 83 ----~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 ----TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred ----cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccC
Confidence 345678999999996533 479999999999321 2344666665 5678999887
Q ss_pred -CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC--CCCc------ccccHHHHHHhCCCCcHHHHHHHHH--
Q 005003 403 -NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFD------ADVSLDVIAMRTPGFSGADLANLLN-- 471 (720)
Q Consensus 403 -N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~--~~l~------~dvdl~~LA~~t~G~SgadL~~lv~-- 471 (720)
|..-.+.+||++ |. +++.+.+.+.++..++++..+.. ..+. ++...+.++..+.| |.+.++|
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHH
Confidence 445589999999 65 47789999999999998874322 2222 12235666776665 4554444
Q ss_pred -HHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 005003 472 -EAAILAGRRGKAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 472 -eAa~~A~r~~~~~It~~dl~~Al~~v~~ 499 (720)
.+...+ +.+. .++.+++++.+.+...
T Consensus 214 E~~~~~~-~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 214 ELAALSA-EPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHhc-CCCc-ccCHHHHHHHHhhhhh
Confidence 444433 2232 3447888887766433
No 58
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=1.7e-16 Score=179.33 Aligned_cols=296 Identities=19% Similarity=0.307 Sum_probs=182.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 325 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~ 325 (720)
.+..+|++.+..+........+.....+|. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 456789996533333333333333333331 123479999999999999999999987 56799999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
|...+.........+.|..... .+++|+|||+|.+..+ +..++.+..++ +....+...+||+++..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~---------~~~~~~l~~~~---n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK---------ERTQEEFFHTF---NALHEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC---------HHHHHHHHHHH---HHHHHCCCcEEEECCCCH
Confidence 8876654432212222332222 4679999999998432 11222222333 222223445666666666
Q ss_pred Cc---cchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 406 DI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 406 ~~---LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
.. +++.+.+ ||.. .+.+..||.++|.+|++..+....+. ++..++.+|....| +.++|..+++.....|..
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 54 6788888 8964 89999999999999999988754432 22237778887764 889999999999888766
Q ss_pred hCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccc----eeEEeecC
Q 005003 480 RGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR----GLTWFIPS 555 (720)
Q Consensus 480 ~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~----G~~~~~p~ 555 (720)
.+ ..||.+.+.+++...... .++.+...++-++|+.++--. ...+.-..|.+.. -..+|+-.
T Consensus 333 ~~-~~it~~~~~~~l~~~~~~----------~~~~~~~~~i~~~v~~~~~i~---~~~l~~~~R~~~~~~aR~iamyl~~ 398 (450)
T PRK00149 333 TG-KPITLELAKEALKDLLAA----------QKKKITIENIQKVVAEYYNIK---VSDLKSKSRTRNIARPRQIAMYLAK 398 (450)
T ss_pred hC-CCCCHHHHHHHHHHhhcc----------CCCCCCHHHHHHHHHHHcCCC---HHHHhCCCCCcccChHHHHHHHHHH
Confidence 55 459999999999875421 112355666777776654221 1121111122111 11122211
Q ss_pred CCCCCccHHHHHHHHHHhhchhhhhhhhcCCCC
Q 005003 556 DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPE 588 (720)
Q Consensus 556 ~~~~~~t~~~l~~~i~~~lgGraAEe~~fg~~~ 588 (720)
..+..| +.+|...+|||-.-.|+.+...
T Consensus 399 -~~~~~s----~~~Ig~~fg~rdhstV~~a~~~ 426 (450)
T PRK00149 399 -ELTDLS----LPEIGRAFGGRDHTTVLHAVRK 426 (450)
T ss_pred -HhcCCC----HHHHHHHcCCCCHhHHHHHHHH
Confidence 111112 3668888888888888776543
No 59
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.1e-16 Score=180.84 Aligned_cols=178 Identities=24% Similarity=0.399 Sum_probs=135.5
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
++.......+-=+|..|++++|+++.|.+.--+.. |-...+-++|+||||+|||+++|+||..+|..|+.+|..
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvG 472 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVG 472 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecc
Confidence 34444444555689999999999999977653322 112234689999999999999999999999999999976
Q ss_pred hhHH---------HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc----
Q 005003 325 EFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---- 391 (720)
Q Consensus 325 ~~~~---------~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---- 391 (720)
.+.+ .|+|..+.++-+.++..+-..| +++|||||.+|+.- .|+. -..||+.||.-.
T Consensus 473 G~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-----qGDP-----asALLElLDPEQNanF 541 (906)
T KOG2004|consen 473 GMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-----QGDP-----ASALLELLDPEQNANF 541 (906)
T ss_pred ccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-----CCCh-----HHHHHHhcChhhccch
Confidence 5543 5899999999999999887777 66699999997311 1121 133444444211
Q ss_pred ---------CCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC
Q 005003 392 ---------GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 392 ---------~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
.-.+|++|||.|..+.++++|+. |+. .|+++-+..++..+|.+.|+-.
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 12369999999999999999999 996 8999999999999999988743
No 60
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.68 E-value=2e-15 Score=168.27 Aligned_cols=242 Identities=19% Similarity=0.342 Sum_probs=159.9
Q ss_pred CCCCCccc-cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005003 251 NTGVTFDD-VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 324 (720)
Q Consensus 251 ~~~~~f~d-I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s 324 (720)
.+..+|++ ++|.+. ......+.....+|. ....+++||||||||||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 35678999 445433 222222333333331 224479999999999999999999876 6789999999
Q ss_pred hhHHHHhhhchH-HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 325 EFVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 325 ~~~~~~~G~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
+|...+...... ....+.+..+ .+.+|+|||+|.+.++ +..+..+..++..+ ..+...+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~~---~~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK---------ERTQEEFFHTFNAL---HENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC---------HHHHHHHHHHHHHH---HHCCCCEEEecCC
Confidence 987665433211 1222222222 3579999999998432 12222233333322 2234456666665
Q ss_pred CCCc---cchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 404 RADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 404 ~p~~---LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
.|.. +++.+.+ ||.. .+.++.||.++|.+|++..+....+. ++..++.+|.+..+ +.++|+.+++.....|
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 5653 5678888 8875 79999999999999999988765443 22336778887764 7899999999988888
Q ss_pred HHhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhh
Q 005003 478 GRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 528 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~ 528 (720)
...+ ..||.+.+.+++...... .++.+..+++-++|+.++
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLLRA----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhccc----------cCCCCCHHHHHHHHHHHc
Confidence 6554 569999999888764321 123467788888887654
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.67 E-value=1.3e-15 Score=173.40 Aligned_cols=212 Identities=23% Similarity=0.290 Sum_probs=151.2
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
.|.++..+.+|+|++|++++++.+.+++..+.+. .+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 4678889999999999999999999988765421 23679999999999999999999999999999999887
Q ss_pred hHHHHhhhchHHHHHHHHHHHh------cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEE
Q 005003 326 FVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 399 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVI 399 (720)
.... ..++.+...+.. ..+.+|+|||+|.+..+. ....++.|+..++. .+..+|
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iI 134 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPII 134 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEE
Confidence 5421 122333222221 246799999999984311 11234455555542 234566
Q ss_pred EEeCCCCccch-hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 400 AATNRADILDS-ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 400 aaTN~p~~LD~-ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
+++|.+..+++ .+.+ |+ ..|.|+.|+..+...+++..+....+. .+..++.|+..+.| |++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 67888887777 5554 44 589999999999999999887654433 22337777776654 7888888776644
Q ss_pred HHhCCCccCHHHHHHHH
Q 005003 478 GRRGKAAISSKEIDDSI 494 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al 494 (720)
.+...|+.+++....
T Consensus 208 --~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 --EGYGKLTLEDVKTLG 222 (482)
T ss_pred --cCCCCCcHHHHHHhh
Confidence 455678888887554
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.7e-15 Score=171.47 Aligned_cols=207 Identities=17% Similarity=0.281 Sum_probs=146.6
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC------------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 316 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~------------ 316 (720)
++.++.+|+|++|++.+++.|+..+..- +.|.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4667889999999999988887766421 34667999999999999999999998765
Q ss_pred ------------CEEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 317 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 317 ------------pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~ 134 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAF 134 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHH
Confidence 244444321 1223456666655532 234699999999982 2345
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~ 459 (720)
+.|+..++.. ...+++|++|+.++.+++++.+ |+. .+.+..|+.++...+++..+...... .+..+..|+..+.
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 7778777743 3567888888888899999999 774 89999999999999998877543332 2223677887765
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
| +.+++.+.++.+...+ + ..||.+++.+++..
T Consensus 210 G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS---E-GKITLETVHEALGL 241 (472)
T ss_pred C-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcC
Confidence 4 5556666665544332 2 34999999888743
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-15 Score=169.62 Aligned_cols=207 Identities=19% Similarity=0.273 Sum_probs=151.9
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 317 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p--------- 317 (720)
..++.++.+|+|++|++.+...|...+..- +.+..+||+||||||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 345678889999999999999888877532 345579999999999999999999998763
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
|+.++++ ...+...+|++.+.+. .....|+||||+|.+. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~ 136 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQ 136 (484)
T ss_pred CCcHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HH
Confidence 2222211 1123445666665553 2345699999999992 24
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~ 457 (720)
.+|.||..|+. +...+++|.+|+.++.+.+++++ |+. .+.+..++.++..+.++..+....+. .+..+..+++.
T Consensus 137 A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~ 211 (484)
T PRK14956 137 SFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK 211 (484)
T ss_pred HHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67888888874 45678999999999999999999 774 67888888888888888877654443 23347788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.| +.++..+++..+...+ ...||.+++.+.+
T Consensus 212 S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 212 GDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred cCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 876 6888888888776432 3358888886655
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.67 E-value=4.9e-15 Score=162.24 Aligned_cols=221 Identities=20% Similarity=0.286 Sum_probs=152.4
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---------CCEEEEech
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 324 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g---------~pf~~vs~s 324 (720)
...++++|.++..+++...+...... ..|.+++|+||||||||++++++++++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 44568999999999888887653221 2345799999999999999999987642 578888885
Q ss_pred hhHH----------HHh--hh-------c-hHHHHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHH
Q 005003 325 EFVE----------MFV--GV-------G-ASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 383 (720)
Q Consensus 325 ~~~~----------~~~--G~-------~-~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~L 383 (720)
...+ .+. +. . ......+++... ...+.||+|||+|.+... .+..+.++
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhH
Confidence 4321 111 11 0 122344555443 345789999999999521 11245556
Q ss_pred HhhhcC-ccCCCcEEEEEEeCCCC---ccchhhcCCCccc-ceeeecCCCHHHHHHHHHHhhcCC----CCcccccHHH-
Q 005003 384 LTEMDG-FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDV- 453 (720)
Q Consensus 384 L~~ldg-~~~~~~ViVIaaTN~p~---~LD~ALlrpgRFd-r~I~i~~Pd~~eR~~IL~~~l~~~----~l~~dvdl~~- 453 (720)
+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++... .+.++ .++.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i 229 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG-VIPLC 229 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh-HHHHH
Confidence 544221 12235789999999876 57888877 675 579999999999999999887521 12222 1223
Q ss_pred --HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 454 --IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 454 --LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
++..+.| ..+.+.++|+.|...|..++...|+.+|+.+|++.+
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3444445 466677899999999999898999999999999876
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.1e-15 Score=174.88 Aligned_cols=204 Identities=16% Similarity=0.243 Sum_probs=148.7
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 317 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------- 317 (720)
.+++++.+|+||+|++.+++.|.+.++. .++++.+||+||+|||||++|+++|+.+++.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 4567888999999999999988887752 2345678999999999999999999988752
Q ss_pred --------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 318 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 318 --------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
++.++.+ ...+...++++++.+.. ....|+||||+|.+. ...
T Consensus 76 C~sCr~I~~G~h~DviEIDAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A 135 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHA 135 (830)
T ss_pred cHHHHHHhcCCCceEEEeccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHH
Confidence 1222111 11234457777776542 234799999999982 235
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhC
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 458 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t 458 (720)
.|.||+.|+.. ..+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+....+. .+..+..|++.+
T Consensus 136 ~NALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 136 FNAMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHHHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67888888743 4578999999999999999999 77 488999999999988888877654443 233377788888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
.| +.++..+++.++..+. ...|+.+++..
T Consensus 211 ~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 211 QG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 76 6788888887776433 33466655543
No 66
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=3.4e-15 Score=168.05 Aligned_cols=244 Identities=16% Similarity=0.254 Sum_probs=161.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 325 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~ 325 (720)
.+..+|++.+-.+........+.....+|.. ..+++||||||+|||+|++++|+++ +..++++++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4678999988444444343444444433321 3469999999999999999999975 46789999999
Q ss_pred hHHHHhhhch-HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 326 FVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~-~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
|...+..... ..+.+ |.......+.+|+|||++.+.++. ..+.. ++..++.+......+||++.+.
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~e---lf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQTE---LFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHHHH---HHHHHHHHHHcCCeEEEECCCC
Confidence 8876543221 12222 333333467899999999884321 11222 2222222222344566666666
Q ss_pred CCc---cchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCC--CcccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 405 ADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 405 p~~---LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~--l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+.... +.+++ ++.|+....| +.++|+.+++.....+
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 664 5677888 775 4789999999999999998876433 33332 7778887764 8899999999887777
Q ss_pred HHhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhh
Q 005003 478 GRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 528 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~ 528 (720)
...+ ..||.+.+.+++....... ..+..+..+++-.+|+.++
T Consensus 314 ~~~~-~~it~~~a~~~L~~~~~~~--------~~~~~i~~~~I~~~V~~~~ 355 (440)
T PRK14088 314 ETTG-EEVDLKEAILLLKDFIKPN--------RVKAMDPIDELIEIVAKVT 355 (440)
T ss_pred HHhC-CCCCHHHHHHHHHHHhccc--------cccCCCCHHHHHHHHHHHc
Confidence 6655 5699999998887653221 1222356777777777653
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=2.6e-15 Score=167.89 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=146.2
Q ss_pred ccCCCCCccccccchHHHHH---HHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 249 EPNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~e---L~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
+..++.+|+|++|+++.... +.+++. .. .+.+++|+||||||||++|+++|+..+.+|+.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~---~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIE---AG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHH---cC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34566789999999999766 666653 21 1337999999999999999999999999999998753
Q ss_pred hHHHHhhhchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 326 FVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
. +...++.+++.+. .....||||||+|.+. .. ..+.|+..++ +..+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~---~q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KA---QQDALLPHVE----DGTITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HH---HHHHHHHHhh----cCcEEEEEe
Confidence 2 2345666666663 2356899999999982 12 2345555554 245777776
Q ss_pred eC--CCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC-----CCcccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005003 402 TN--RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-----KFDADVSLDVIAMRTPGFSGADLANLLNEAA 474 (720)
Q Consensus 402 TN--~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~-----~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa 474 (720)
|+ ....+++++++ |+ ..+.++.++.++...+++..+... .+. +..++.+++.+. .+.+.+.++++.+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~-Gd~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLAN-GDARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 53 34578999999 87 588999999999999998876432 222 222567777774 46777777777766
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHH
Q 005003 475 ILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 475 ~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
.. ...|+.+++.+++....
T Consensus 202 ~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhhh
Confidence 43 45799999999887643
No 68
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=7e-15 Score=158.86 Aligned_cols=213 Identities=19% Similarity=0.268 Sum_probs=140.4
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC-----CCEEE
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS 320 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g-----~pf~~ 320 (720)
+|.+++.+.+|++++|.+++++.+.+.+.. + . +.+++|+||||||||++|+++++++. .++++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 577888899999999999999988887752 1 1 12699999999999999999999873 46788
Q ss_pred EechhhHHHH-------------hhh-------chHHHHHHHHHHHh-----cCCeEEEEccchhcccccCCCCCCCChH
Q 005003 321 ISGSEFVEMF-------------VGV-------GASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 375 (720)
Q Consensus 321 vs~s~~~~~~-------------~G~-------~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e 375 (720)
++++++.... .+. ....++.+.+.... ..+.+|+|||+|.+. ..
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~ 140 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------ED 140 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HH
Confidence 8988764321 010 11223333333322 234699999999882 22
Q ss_pred HHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHH
Q 005003 376 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVI 454 (720)
Q Consensus 376 ~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~L 454 (720)
.+ +.|...++.... ...+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++..++++..+.+.... .+..++.+
T Consensus 141 ~~---~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l 212 (337)
T PRK12402 141 AQ---QALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELI 212 (337)
T ss_pred HH---HHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23 334444443322 24455566666677778877 65 478999999999999998887655443 23346777
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 455 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 455 A~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
+..+. .+ ++.+++.....+. +...||.+++.+++.
T Consensus 213 ~~~~~-gd---lr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 213 AYYAG-GD---LRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHcC-CC---HHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 77774 34 4444554444442 234799999887654
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.8e-15 Score=168.60 Aligned_cols=217 Identities=20% Similarity=0.294 Sum_probs=157.4
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------ 320 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~------ 320 (720)
+.++..+.+|+|++|++.+++.|...+..- +.|.++||+||||||||++|+++|+++++.-..
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 345678889999999999999888766422 346689999999999999999999998763210
Q ss_pred ------EechhhHHH----------HhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 321 ------ISGSEFVEM----------FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 321 ------vs~s~~~~~----------~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
-+|..+.+. -...+...++++++.+... ...|++|||+|.+. ...+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~ 145 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAF 145 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHH
Confidence 011111110 0112456678888777532 34699999999982 2456
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~ 459 (720)
+.|+..++. +...+++|.+|+.++.+++++.+ |+ ..+++..++.++...+++..+.......+ ..+..++..+.
T Consensus 146 naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888774 45578888888888999999998 77 47889999999999999988876554322 33677888877
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
| +.+++.++++.+..++... ...||.+++.+.+.
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 6 8899999999887765322 23688888876653
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.1e-15 Score=172.84 Aligned_cols=211 Identities=18% Similarity=0.245 Sum_probs=150.3
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 317 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------- 317 (720)
.+++.+.+|+||+|++.+++.|.+.+..- +++..+||+||+|||||++|+.+|+.+++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 35677889999999999999998888633 345578999999999999999999998761
Q ss_pred --EEEE-echh--------hHHH--HhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 318 --FFSI-SGSE--------FVEM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 318 --f~~v-s~s~--------~~~~--~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
.-.+ +|.. +++. -...+...+|++.+.+.. ....|++|||+|.+. ....
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~Aa 141 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHAF 141 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHHH
Confidence 1001 1111 1100 001234567777766532 335799999999992 2467
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~ 459 (720)
|.||+.|+. ...+++||.+||.++.|.+.+++ |+ .++.|..++.++..+.++..+....+..+ ..+..|++.+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 889998885 45678999999999999999999 77 48899999999988888877655444332 23567787777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
| +.++..+++.++... +...|+.+++.+.
T Consensus 217 G-s~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 217 G-SMRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred C-CHHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 5 788888888876643 2345766655543
No 71
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.5e-15 Score=162.08 Aligned_cols=213 Identities=23% Similarity=0.268 Sum_probs=148.7
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE-------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------- 320 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~------- 320 (720)
.++..|.+|+||+|++.+++.+...+..- +.|..+||+||||+|||++|+++|+++.+..-.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 35667889999999999999988777522 345678999999999999999999988642110
Q ss_pred -EechhhHHH-------H---hhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 321 -ISGSEFVEM-------F---VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 321 -vs~s~~~~~-------~---~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
.+|.++... + .......++++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLLk 141 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALLK 141 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHHH
Confidence 011111100 0 01223446666665432 224699999999982 235567888
Q ss_pred hhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHH
Q 005003 386 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 464 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~Sga 464 (720)
.++.. ...+.+|.+|+.++.+.+.+.+ |+ ..+++++|+.++..++++..+...... .+..+..++..+.| +++
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77753 4467777778888889999988 77 478999999999999998877654432 22346677877765 778
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 465 DLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
++.++++.+... +...|+.+++.+++.
T Consensus 216 ~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 216 DALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 888888776543 466799998877763
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.9e-15 Score=170.28 Aligned_cols=206 Identities=18% Similarity=0.277 Sum_probs=150.5
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++.++.+|+||+|++.+++.|...+.. .+++..+||+||||||||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456778999999999999998888762 2345689999999999999999999998762
Q ss_pred -------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 318 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 318 -------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
++.+++++ ..+...+|++...+.. ....|++|||+|.+. ....
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~ 135 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSF 135 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHH
Confidence 22332221 1234456777665532 335799999999982 2356
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~ 459 (720)
|.|+..++.. ..++.+|.+|+.+..+.+.+++ |+. ++++..++.++..+.++..+.+..... +..+..+++.+.
T Consensus 136 NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~ 210 (702)
T PRK14960 136 NALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQ 210 (702)
T ss_pred HHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7788887743 4567888888888888888887 774 889999999999888888776554432 233677888776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
| +.+++.+++..+... +...|+.+++...+.
T Consensus 211 G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 5 788888888776543 456799888876543
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.8e-15 Score=168.61 Aligned_cols=207 Identities=16% Similarity=0.243 Sum_probs=150.0
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 317 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p--------- 317 (720)
..++.++.+|+||+|++.+++.|...+..- +.|..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 345678889999999999999999888532 345579999999999999999999988763
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
++.++.++ ..+...+|++.+.+.. ....|++|||+|.+. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GH 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HH
Confidence 33333221 2234457777766532 234699999999982 23
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~ 457 (720)
..|.||..|+.. ...+++|.+|+.+..+.+.+++ |+ ..+++..++.++..+.++..+...... .+..+..+++.
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567888888753 4567888888888888888888 76 367888888888777777766554433 22336778877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.| +.+++.+++..+... +...||.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 764 788898988877543 34568888776554
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.63 E-value=6.8e-15 Score=177.13 Aligned_cols=217 Identities=21% Similarity=0.298 Sum_probs=150.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+-++++++|+++..+++.+++ .... ..+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l---~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDIL---LRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHH---hcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4568999999999755544443 2221 1278999999999999999999875 2457778
Q ss_pred echhhHH--HHhhhchHHHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 322 SGSEFVE--MFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 322 s~s~~~~--~~~G~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
+.+.+.. .+.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. ++.+ .-|.|+..+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHh----hCCCeEE
Confidence 8777653 5788889999999999865 468999999999997654321 1122 223333333 2577999
Q ss_pred EEEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-----ccccHHHHHHhCCCCc-----H
Q 005003 399 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-----ADVSLDVIAMRTPGFS-----G 463 (720)
Q Consensus 399 IaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-----~dvdl~~LA~~t~G~S-----g 463 (720)
|+||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+..... .+..+..++..+.+|- |
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99998754 48999999 996 89999999999999987665433221 2333666667666553 3
Q ss_pred HHHHHHHHHHHHHHHHh-CCCccCHHHHHHH
Q 005003 464 ADLANLLNEAAILAGRR-GKAAISSKEIDDS 493 (720)
Q Consensus 464 adL~~lv~eAa~~A~r~-~~~~It~~dl~~A 493 (720)
.-.-.++.+|+...... ....+..+++++.
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 34557788877655433 3334444444433
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.63 E-value=1.9e-14 Score=159.34 Aligned_cols=222 Identities=21% Similarity=0.254 Sum_probs=153.2
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechhhH-
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV- 327 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~~~- 327 (720)
...+.++|.++..+++...+...... ..|.+++|+||||||||++++.+++++ ++++++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35678999999999888877543221 224579999999999999999999876 5789999986432
Q ss_pred ---------HHHhhh-------c-hHHHHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC
Q 005003 328 ---------EMFVGV-------G-ASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 389 (720)
Q Consensus 328 ---------~~~~G~-------~-~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg 389 (720)
..+.+. . ......+.+... ...+.||+|||+|.+.... ..+.+..++..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhc
Confidence 111110 1 112223333333 2456899999999995211 12356666666654
Q ss_pred ccCCCcEEEEEEeCCCC---ccchhhcCCCccc-ceeeecCCCHHHHHHHHHHhhcCC----CCcccccHHHHHHhCCC-
Q 005003 390 FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRTPG- 460 (720)
Q Consensus 390 ~~~~~~ViVIaaTN~p~---~LD~ALlrpgRFd-r~I~i~~Pd~~eR~~IL~~~l~~~----~l~~dvdl~~LA~~t~G- 460 (720)
.. ..++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++... .+ .+..++.+++.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~-~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV-DDEVLDLIADLTARE 244 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC-CHhHHHHHHHHHHHh
Confidence 43 23688889888754 56777776 553 478999999999999999887532 12 22225666666632
Q ss_pred -CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 461 -FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 461 -~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
...+.+.++|..|...|..++...|+.+|+..|++++
T Consensus 245 ~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 245 HGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2345566889999999999999999999999999887
No 76
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=6e-15 Score=158.61 Aligned_cols=209 Identities=21% Similarity=0.314 Sum_probs=137.9
Q ss_pred cccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 244 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 244 ~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
..++.++.++.+|+|++|++++++.+.+.+.. ...|..+||+||||+|||++|++++++.+.+++.+++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 34677889999999999999999988887752 1345677789999999999999999999999999998
Q ss_pred hhhHHHHhhhchHHHHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
++ . . .......+.+...... ...+++|+|||+|.+. ....+..+..++ +.. ..++.+|.+|
T Consensus 77 ~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~l---e~~--~~~~~~Ilt~ 138 (316)
T PHA02544 77 SD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFM---EAY--SKNCSFIITA 138 (316)
T ss_pred Cc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHH---Hhc--CCCceEEEEc
Confidence 76 1 1 1111111222111111 1357899999999872 122333444444 332 3457888899
Q ss_pred CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC---------CCCcccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 403 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---------KKFDADVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 403 N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~---------~~l~~dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
|.++.+++++++ ||. .+.++.|+.+++.++++.+... ..+.++ .+..++....| |++.+++..
T Consensus 139 n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 139 NNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred CChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHH
Confidence 999999999999 885 7899999999998877654322 122111 24556655443 455555554
Q ss_pred HHHHHHhCCCccCHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~ 492 (720)
...+. ...++.+++..
T Consensus 211 ~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 211 QRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHc---cCCCCHHHHHH
Confidence 44432 24566666543
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=8.5e-15 Score=158.32 Aligned_cols=204 Identities=21% Similarity=0.221 Sum_probs=136.0
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-----CEEEE
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSI 321 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-----pf~~v 321 (720)
|.+++++.+|+|++|++++++.|+.++..- ..| ++||+||||||||++|+++|+++.. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 567788999999999999999888776521 122 5999999999999999999999732 35666
Q ss_pred echhhHHHHhhhchHHHHHHHHHHH-------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 322 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 322 s~s~~~~~~~G~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
+.++... ...+++..+... ...+.|++|||+|.+. ... .+.|+..|+.+. .
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~a---q~aL~~~lE~~~--~ 128 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGA---QQALRRTMEIYS--N 128 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHH---HHHHHHHHhccc--C
Confidence 6654321 123343333211 1235799999999982 222 344555555332 3
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
...+|.+||.++.+.+++++ |+. .++++.|+.++....++..+++..+. .+..+..++..+.| |++.+++..
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 35577788888888899998 664 78999999999999888877654433 22336777776654 444444444
Q ss_pred HHHHHHhCCCccCHHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~A 493 (720)
...+ .+...|+.+++.+.
T Consensus 202 q~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 202 QATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHH--hcCCCCCHHHHHHH
Confidence 3222 23456887777643
No 78
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=1.2e-14 Score=166.82 Aligned_cols=245 Identities=19% Similarity=0.264 Sum_probs=159.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 325 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~ 325 (720)
.+..+|++++..+........+.....++. ...+.++|||++|+|||+|++++|+++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356799999855443322222222222221 112359999999999999999999976 57899999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
|.+.+.........+.|.... ..+++|+||||+.+..+ +..+..+..+++.+. .+.+.+||++...|
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~---e~gk~IIITSd~~P 421 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLH---NANKQIVLSSDRPP 421 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHH---hcCCCEEEecCCCh
Confidence 987765443332223344322 34689999999998432 222333333443332 23344555443334
Q ss_pred C---ccchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 406 D---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 406 ~---~LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
. .+++.|.+ ||.. .+.+..||.+.|.+||+.++....+..+. -++.|+.+.. -+.++|+.+++.....+..
T Consensus 422 ~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~ 498 (617)
T PRK14086 422 KQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASL 498 (617)
T ss_pred HhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Confidence 3 57888998 8865 77999999999999999988766554332 2667777766 4789999999988777765
Q ss_pred hCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhh
Q 005003 480 RGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 528 (720)
Q Consensus 480 ~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~ 528 (720)
.+ ..||.+.+++++..+.... ++..+...++-++|+.++
T Consensus 499 ~~-~~itl~la~~vL~~~~~~~---------~~~~it~d~I~~~Va~~f 537 (617)
T PRK14086 499 NR-QPVDLGLTEIVLRDLIPED---------SAPEITAAAIMAATADYF 537 (617)
T ss_pred hC-CCCCHHHHHHHHHHhhccc---------cCCcCCHHHHHHHHHHHh
Confidence 54 5699999988887653321 122345566667776543
No 79
>PRK06893 DNA replication initiation factor; Validated
Probab=99.62 E-value=2.9e-14 Score=147.19 Aligned_cols=212 Identities=13% Similarity=0.107 Sum_probs=134.8
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
...+..+|++++|.+... .+..+...... .....++||||||||||+|++++|+++ +....+++..+
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKNFID---------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHHhhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 345678999999877532 12222211111 111258999999999999999999875 45666666643
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCc-EEEEEEeCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~-ViVIaaTN~ 404 (720)
.... ..+.++..+ ...+|+|||++.+.. ....+..+..+++.+. .+.+ +++++++..
T Consensus 78 ~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~---~~~~~illits~~~ 135 (229)
T PRK06893 78 SQYF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIK---EQGKTLLLISADCS 135 (229)
T ss_pred hhhh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 2211 112333332 347999999999842 2233444555555432 2333 445566666
Q ss_pred CCccc---hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 405 ADILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 405 p~~LD---~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
|..++ +.+.++.++...+.++.||.++|.+|++.++....+.. +.-++.|+++..| +.+.+.++++.....+..+
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~ 214 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA 214 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc
Confidence 76554 88988555567889999999999999998775444332 2236778887774 7888888888764333333
Q ss_pred CCCccCHHHHHHHH
Q 005003 481 GKAAISSKEIDDSI 494 (720)
Q Consensus 481 ~~~~It~~dl~~Al 494 (720)
+ ..||...+.+++
T Consensus 215 ~-~~it~~~v~~~L 227 (229)
T PRK06893 215 Q-RKLTIPFVKEIL 227 (229)
T ss_pred C-CCCCHHHHHHHh
Confidence 3 469988887765
No 80
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.7e-15 Score=170.85 Aligned_cols=178 Identities=27% Similarity=0.403 Sum_probs=136.9
Q ss_pred cccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 244 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 244 ~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
.+.+......+-=.|..|.+++|+++.|.+.-.+..... +- .-+||+||||+|||+|++.||+.+|.+|+.++.
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~-----kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL 383 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKL-----KG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISL 383 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccC-----CC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEec
Confidence 344444444555679999999999999877654333211 11 148899999999999999999999999999997
Q ss_pred hhhHH---------HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC--
Q 005003 324 SEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-- 392 (720)
Q Consensus 324 s~~~~---------~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-- 392 (720)
....+ .|+|..+.++-+-...|....| +++|||||.++..-. |+ .-..||+.+|.-++
T Consensus 384 GGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GD-----PaSALLEVLDPEQN~~ 452 (782)
T COG0466 384 GGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GD-----PASALLEVLDPEQNNT 452 (782)
T ss_pred CccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CC-----hHHHHHhhcCHhhcCc
Confidence 66543 5899999999999999988877 666999999964321 12 22445655553211
Q ss_pred -----------CCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 393 -----------NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 393 -----------~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
-++|+||||.|..+.++.+|+. |+. +|++.-+..++..+|.+.|+-
T Consensus 453 F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 453 FSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 1369999999999999999999 997 899999999999999998863
No 81
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.61 E-value=2.7e-14 Score=145.83 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=135.3
Q ss_pred CCCCCcccccc--chHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 251 NTGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 251 ~~~~~f~dI~G--~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
..+.+|+++++ .+.+.+.+++.+. ...+.+++|+||||||||++|+++++++ +.++++++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 34567888873 4445555555542 1234589999999999999999999876 57899999988
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+.... .+++.... .+.+|+|||+|.+.. ..+..+.+..++..+. .....+|++++..+
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~---~~~~~iIits~~~~ 134 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVR---EAGGRLLIAGRAAP 134 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 76432 23333332 245999999999832 1122334444444332 22233444444344
Q ss_pred Cccc---hhhcCCCcc--cceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 406 DILD---SALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 406 ~~LD---~ALlrpgRF--dr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
..++ +.+.+ |+ ..++.++.|+.+++..+++.++.+.... .+..+..++.. .+-+.+++.++++++...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 3332 66776 66 4688999999999999998876544332 22226777775 556999999999998876655
Q ss_pred hCCCccCHHHHHHHH
Q 005003 480 RGKAAISSKEIDDSI 494 (720)
Q Consensus 480 ~~~~~It~~dl~~Al 494 (720)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 569988877654
No 82
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.2e-14 Score=162.28 Aligned_cols=204 Identities=21% Similarity=0.315 Sum_probs=152.1
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-------------
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------- 316 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~------------- 316 (720)
++++.+|+|++|++.+++.|...+.. .++|.++||+||||+|||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 56778999999999999988876652 245668999999999999999999997643
Q ss_pred -----------CEEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHH
Q 005003 317 -----------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 381 (720)
Q Consensus 317 -----------pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln 381 (720)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+|
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~N 134 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFN 134 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHH
Confidence 233444321 1234567777777643 234699999999982 23678
Q ss_pred HHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCC
Q 005003 382 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPG 460 (720)
Q Consensus 382 ~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G 460 (720)
.||..++. +...+++|.+|+.++.+.+.+++ |+. .+++..++.++..+.++..+.+.... .+..+..+++.+.|
T Consensus 135 aLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888885 34568888888888899999998 774 68999999999888888877654433 22336778888865
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 461 FSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 461 ~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.+++.++++.+..++ ...||.+++.+.+
T Consensus 210 -slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred -CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 8888888888877654 2478988887654
No 83
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1.5e-14 Score=174.54 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=142.4
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+-++++++|.++..+.+.+++.. .. ..+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r---~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR---RT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc---CC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 456899999999865555554432 21 1269999999999999999999987 7889999
Q ss_pred echhhH--HHHhhhchHHHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 322 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 322 s~s~~~--~~~~G~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
+.+.++ .+|.|..+.+++.+|+.+.. ..|+||||||+|.+.+.+.. .++.+ .. +.|...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~d-~~---~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAMD-AG---NMLKPAL----ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccchh-HH---HHhcchh----hcCCCeE
Confidence 888876 45788889999999998644 57899999999999765432 11222 22 2232222 3678999
Q ss_pred EEEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-----cHHHHHHhCCC-----CcH
Q 005003 399 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-----SLDVIAMRTPG-----FSG 463 (720)
Q Consensus 399 IaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-----dl~~LA~~t~G-----~Sg 463 (720)
|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++...........+ .+...+..+.. +-+
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~p 387 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLP 387 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCC
Confidence 99999877 38999999 998 68899999999999998776554333221 12333333332 333
Q ss_pred HHHHHHHHHHHHHH
Q 005003 464 ADLANLLNEAAILA 477 (720)
Q Consensus 464 adL~~lv~eAa~~A 477 (720)
.....++.+++...
T Consensus 388 dkAi~LiD~aaa~~ 401 (857)
T PRK10865 388 DKAIDLIDEAASSI 401 (857)
T ss_pred hHHHHHHHHHhccc
Confidence 44556777766544
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.4e-14 Score=166.20 Aligned_cols=205 Identities=18% Similarity=0.293 Sum_probs=147.9
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++..+.+|+||+|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 4567789999999999999888877632 345578999999999999999999998763
Q ss_pred -------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 318 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 318 -------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
++.++.++ ..+...+|++.+.+.. ....|++|||+|.+. ....
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~ 136 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSF 136 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHH
Confidence 12222211 1233456666665532 234699999999982 3467
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~ 459 (720)
|.||+.|+. +...+++|.+|+.++.|.+.+++ |+ ..++|..++.++....++..+....+.. +..+..+++.+.
T Consensus 137 NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~ 211 (647)
T PRK07994 137 NALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAAD 211 (647)
T ss_pred HHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888884 45568888889889999999999 76 5889999999999988888775443332 233667887777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
| +.++..+++..|... +...|+.+++...+
T Consensus 212 G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 212 G-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 5 788888888776533 33456666665443
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3e-14 Score=168.07 Aligned_cols=208 Identities=18% Similarity=0.219 Sum_probs=144.9
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE-------EEE
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FSI 321 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf-------~~v 321 (720)
++.++.+|+||+|++.+++.|+..+..- ++|..+||+||||||||++|+++|+.+++.- ..+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4667889999999999999988777532 3456789999999999999999999987641 111
Q ss_pred -echhhHHH-------Hh---hhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh
Q 005003 322 -SGSEFVEM-------FV---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 386 (720)
Q Consensus 322 -s~s~~~~~-------~~---G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ 386 (720)
+|-.+.+. +. ..+...+|.+.+.+.. ....|+||||+|.+. ...+|.||..
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKt 142 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKT 142 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHH
Confidence 11111110 00 1223446666655532 234699999999992 3467888888
Q ss_pred hcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHH
Q 005003 387 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGAD 465 (720)
Q Consensus 387 ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~Sgad 465 (720)
|+. +..++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.++..+....+.. +..+..|++.+.| +.++
T Consensus 143 LEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ 216 (944)
T PRK14949 143 LEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRD 216 (944)
T ss_pred Hhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34567888888888889999998 76 4789999999999988888775543332 2236778877765 6888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 466 LANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 466 L~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
+.+++..+... +...++.+++.
T Consensus 217 ALnLLdQala~----~~~~It~~~V~ 238 (944)
T PRK14949 217 ALSLTDQAIAF----GGGQVMLTQVQ 238 (944)
T ss_pred HHHHHHHHHHh----cCCcccHHHHH
Confidence 88888877632 23345555443
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.9e-14 Score=166.72 Aligned_cols=213 Identities=18% Similarity=0.250 Sum_probs=152.1
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE--Eech-
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS--ISGS- 324 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~--vs~s- 324 (720)
.++.++.+|+||+|++.+++.|...+.. .++|+++||+||+|+|||++|+++|++++++-.. ..|.
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 3567788999999999999998888763 2456789999999999999999999987653110 0111
Q ss_pred -----hhHH----------HHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 325 -----EFVE----------MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 325 -----~~~~----------~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
.+.. .-...+...++++++.+.. ....|++|||+|.+. ...+|.||.
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLK 141 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLK 141 (709)
T ss_pred cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHH
Confidence 1100 0012234567777776532 234799999999872 235678888
Q ss_pred hhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHH
Q 005003 386 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGA 464 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~Sga 464 (720)
.|+.. ...+++|.+||.+..+.+.+++ |+ ..+.|..++.++....++..+....+.. +..+..|++.+. .+.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHH
Confidence 88753 4567888888888999989887 77 3678889999998888888877655432 223677888776 4788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 465 DLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
++.++++.+... +...|+.+++...+.
T Consensus 216 dAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 216 DALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 999999887654 345688887776653
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.59 E-value=1.5e-14 Score=174.47 Aligned_cols=163 Identities=24% Similarity=0.359 Sum_probs=127.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
..-.++.++|.++..+++.+++.. +.+++++|+||||||||++|+++|.+. +.+++.+
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345689999999999888777642 223479999999999999999999975 4789999
Q ss_pred echhhH--HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEE
Q 005003 322 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 399 (720)
Q Consensus 322 s~s~~~--~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVI 399 (720)
+.+.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+.++. .+... ..+-|...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~---~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAID---AANILKPAL----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCccc---HHHHhHHHH----hCCCcEEE
Confidence 998887 4678888999999999998888999999999999765432 11111 222222222 25679999
Q ss_pred EEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHh
Q 005003 400 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 439 (720)
Q Consensus 400 aaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~ 439 (720)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 9999764 47899999 997 6899999999998888754
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.1e-14 Score=161.44 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=147.0
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++..+.+|+||+|++.+++.|+..+..- ++|..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 4677889999999999999998888642 345578999999999999999999987541
Q ss_pred ------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHH
Q 005003 318 ------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 381 (720)
Q Consensus 318 ------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln 381 (720)
++.++.++ ..+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 33333321 1233456666554432 345799999999872 24577
Q ss_pred HHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCC
Q 005003 382 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPG 460 (720)
Q Consensus 382 ~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G 460 (720)
.|+..++.. ...+++|.+||.++.+.+.+.+ |+. .+++..|+.++....++..+.+..... +..+..++..+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888753 3467888888989999999998 764 789999999999999988876554432 2236777777765
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 461 FSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 461 ~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.+++.++++.+... ...||.+++.+.+
T Consensus 210 -dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 210 -AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred -CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 566677777665431 3368888877664
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=163.16 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=182.1
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechhhH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 327 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~~~ 327 (720)
..+|++.+-.+.....+..+......|. ....+++|||++|+|||+|++++++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4689998854433322322222233332 123479999999999999999999854 5788999999998
Q ss_pred HHHhhhchH---HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 328 EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 328 ~~~~G~~~~---~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
..+...... .+..+.+.. ..+.+|+|||++.+.. .+..+..+..+++.+. ...+.+|+++...
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~---~~~k~iIltsd~~ 249 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFI---ENDKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCcEEEECCCC
Confidence 776543221 222222222 3457999999999842 2233334444444332 2334455554444
Q ss_pred CC---ccchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCC---cccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005003 405 AD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKF---DADVSLDVIAMRTPGFSGADLANLLNEAAIL 476 (720)
Q Consensus 405 p~---~LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l---~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~ 476 (720)
|+ .+++.|.+ ||.. .+.+..|+.++|.+|++.++....+ -++..++.|+....| +++.|.++++.+...
T Consensus 250 P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 250 PELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 54 45788888 8864 8889999999999999998876442 122236778887775 899999999998866
Q ss_pred HHHhC-CCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCcccee----EE
Q 005003 477 AGRRG-KAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGL----TW 551 (720)
Q Consensus 477 A~r~~-~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~----~~ 551 (720)
+.... ...||.+.+.+++..+... .+..+...++-++|+.++--. +..+.-..|.+..-. ++
T Consensus 327 a~~~~~~~~it~~~v~~~l~~~~~~----------~~~~~t~~~I~~~Va~~~~i~---~~dl~s~~R~~~i~~~Rqiam 393 (450)
T PRK14087 327 SQQNPEEKIITIEIVSDLFRDIPTS----------KLGILNVKKIKEVVSEKYGIS---VNAIDGKARSKSIVTARHIAM 393 (450)
T ss_pred HhcccCCCCCCHHHHHHHHhhcccc----------ccCCCCHHHHHHHHHHHcCCC---HHHHhCCCCCccccHHHHHHH
Confidence 65542 3679999999988764111 112355667777777654321 222221222211111 12
Q ss_pred eecCCCCCCccHHHHHHHHHHhhchhhhhhhhcCCCCccc
Q 005003 552 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTT 591 (720)
Q Consensus 552 ~~p~~~~~~~t~~~l~~~i~~~lgGraAEe~~fg~~~~t~ 591 (720)
|+-.+ +|... +.+|...+|||-.-.|+.+...+..
T Consensus 394 yL~r~----~t~~s-l~~IG~~FggrdHsTV~~a~~ki~~ 428 (450)
T PRK14087 394 YLTKE----ILNHT-LAQIGEEFGGRDHTTVINAERKIEK 428 (450)
T ss_pred HHHHH----HcCCC-HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 22111 11111 4678999999999999987654433
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.6e-14 Score=163.18 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=151.6
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++..+.+|+|++|++.+++.|++.+..- +.++.+||+||+|||||++|+.+|+.++++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 5667889999999999999998887642 345679999999999999999999987542
Q ss_pred -------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 318 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 318 -------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
++.++++ .+.+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~ 136 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAF 136 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHH
Confidence 2222221 12344567777777653 234699999999982 2367
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~ 459 (720)
|.||..++. +...+++|.+|+.++.+.+.+++ |+. .+.|..|+.++....++..+.+..+..+ ..+..++..+.
T Consensus 137 naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 137 NALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888875 34567888888889999999998 775 6789999999998888887765544322 33667787776
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
| +.+++.+++..+...+ ...||.+++.+.+
T Consensus 212 G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 212 G-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 5 7888888888776543 4568888776543
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=6.5e-14 Score=143.82 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=134.1
Q ss_pred ccCCCCCccccccc--hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005003 249 EPNTGVTFDDVAGV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 323 (720)
Q Consensus 249 ~~~~~~~f~dI~G~--de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~ 323 (720)
...++.+|+++.+. ..+...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34556789998733 444444444443 12234589999999999999999999865 778999998
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
.++.+.. .. .....+|+|||+|.+. ...+..+..++..+ ..+...++|.+++
T Consensus 79 ~~~~~~~------------~~--~~~~~~liiDdi~~l~-----------~~~~~~L~~~~~~~---~~~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLAF------------DF--DPEAELYAVDDVERLD-----------DAQQIALFNLFNRV---RAHGQGALLVAGP 130 (227)
T ss_pred HHhHHHH------------hh--cccCCEEEEeChhhcC-----------chHHHHHHHHHHHH---HHcCCcEEEEeCC
Confidence 8765321 11 2235689999999872 12333444444433 2334433444444
Q ss_pred C-CC--ccchhhcCCCcc--cceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 404 R-AD--ILDSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 404 ~-p~--~LD~ALlrpgRF--dr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
. |. .+.+.+.+ || ...+++++|+.+++..+++.+.....+.-+ ..++.+++..+ -+.+++.++++.-...|
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 3 32 34567776 66 458899999998888888876654433322 23677777555 58999999999876666
Q ss_pred HHhCCCccCHHHHHHHHH
Q 005003 478 GRRGKAAISSKEIDDSID 495 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~ 495 (720)
... +..||...+.+++.
T Consensus 208 ~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHh-CCCCCHHHHHHHHh
Confidence 444 46899888887764
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.2e-14 Score=163.88 Aligned_cols=213 Identities=17% Similarity=0.235 Sum_probs=149.5
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE--------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------- 318 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf-------- 318 (720)
..++..+.+|+||+|++.+++.|.+.+..- +.|..+||+||+|||||++|+++|+.+++.-
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 345677889999999999999888887643 3455789999999999999999999886510
Q ss_pred ----EEE-echhh--------HHH--HhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 319 ----FSI-SGSEF--------VEM--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 319 ----~~v-s~s~~--------~~~--~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
-.+ +|..+ .+. ....+...+|++.+.+... ...|++|||+|.+. ...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 000 11111 100 0012344677777765432 23699999999982 235
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhC
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRT 458 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t 458 (720)
.|.||..++. ....+++|.+|+.+..+.+.+++ |+ .++++..++.++..+.++..+.+..+..+ ..+..|++.+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7788888875 34567888888888888888888 76 47899999999988888877765444322 2367788877
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
.| +.+++.+++..+... +...||.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 75 788888888766644 34568877766543
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.58 E-value=5e-14 Score=153.56 Aligned_cols=208 Identities=22% Similarity=0.347 Sum_probs=149.0
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 317 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p--------- 317 (720)
+.++.++.+|+|++|++++++.+.+.+.. .+.|..+||+||||+|||++|+++|+.+.++
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34566788999999999999998887752 1345679999999999999999999987543
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
++.+++.+ ..+...++++++.+... ...|++|||+|.+. ..
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KS 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HH
Confidence 22222211 12334567777776432 23599999999882 23
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~ 457 (720)
..+.|+..++.. ..++++|.+||.++.+.+++.+ |+. .++++.|+.++..++++.++.+....- +..+..++..
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567788888653 3467788888888888899988 774 789999999999999998876654432 2335667777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
+.| +.+.+.+.++.+...+ ...||.+++.+++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 654 6777777776666543 24599999987763
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=6e-14 Score=158.01 Aligned_cols=228 Identities=17% Similarity=0.228 Sum_probs=143.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 327 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~ 327 (720)
.+..+|++.+-.+........+....+.+.. ......++++||||||+|||+|++++++++ +.+++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 4667999998333333222222222222110 011123479999999999999999999875 7899999998887
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC-
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD- 406 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~- 406 (720)
..+.......-...|.... ..+++|+|||++.+.++ ...++.+-.+++.+ ......+|+++++.|.
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k---------~~~qeelf~l~N~l---~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK---------GATQEEFFHTFNSL---HTEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---------hhhHHHHHHHHHHH---HHCCCcEEEecCCCHHH
Confidence 6554332111122344432 34679999999998432 11222222333222 1123455555555554
Q ss_pred --ccchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHhCCCCcHHHHHHHHHHHHH---HHH
Q 005003 407 --ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEAAI---LAG 478 (720)
Q Consensus 407 --~LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~t~G~SgadL~~lv~eAa~---~A~ 478 (720)
.+++.|.+ ||. ..+.+..|+.++|.+|++..+....+.-+. .++.++....+ +.++|.++++..+. .+.
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 56789998 886 588999999999999999988765543222 25567776663 77888888888753 332
Q ss_pred HhCCCccCHHHHHHHHHHHH
Q 005003 479 RRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 479 r~~~~~It~~dl~~Al~~v~ 498 (720)
..+ ..||.+++++++....
T Consensus 326 ~~~-~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 326 LSH-QLLYVDDIKALLHDVL 344 (445)
T ss_pred hhC-CCCCHHHHHHHHHHhh
Confidence 233 5699999999987754
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=5.5e-14 Score=155.82 Aligned_cols=185 Identities=19% Similarity=0.316 Sum_probs=130.3
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE----------------
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---------------- 318 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf---------------- 318 (720)
.|++|+|++.+++.|++.+..-+. .+...+.+.|.++||+||||+|||++|+++|..+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999986443 23344566788999999999999999999999775531
Q ss_pred -------EEEechhhHHHHhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh
Q 005003 319 -------FSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 387 (720)
Q Consensus 319 -------~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l 387 (720)
..+.... ...+...+|++++.+... ...|+||||+|.+. ....|.||..|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHHh
Confidence 1111110 112345678888877542 34699999999992 22457788888
Q ss_pred cCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHH
Q 005003 388 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA 467 (720)
Q Consensus 388 dg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~ 467 (720)
+.. ..++++|.+|+.++.+.|.+++ |+ ..+.|+.|+.++..+.+.... ... ......++..+.|..+..+.
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 753 3445555556668999999999 77 489999999998888776432 222 23356788888887665544
Q ss_pred HH
Q 005003 468 NL 469 (720)
Q Consensus 468 ~l 469 (720)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 43
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.4e-14 Score=161.49 Aligned_cols=211 Identities=18% Similarity=0.241 Sum_probs=147.6
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE--Eec---
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS--ISG--- 323 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~--vs~--- 323 (720)
++..+.+|+||+|++.+++.+...+..- +.+..+||+||||+|||++|+++|+.+++..-. -.|
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4566789999999999999888887632 345578999999999999999999998663110 011
Q ss_pred hhhH--------HH-----HhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh
Q 005003 324 SEFV--------EM-----FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 386 (720)
Q Consensus 324 s~~~--------~~-----~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ 386 (720)
.... +. -...+...+|++.+.+.. ....|++|||+|.+. ....|.||..
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK~ 142 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLKT 142 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHHH
Confidence 1000 00 001234557777776643 224699999999982 2356888888
Q ss_pred hcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHHH
Q 005003 387 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGAD 465 (720)
Q Consensus 387 ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~Sgad 465 (720)
++. +...+++|.+|+.++.+.+.+++ |+ ..+++..++.++..+.+...+.......+ ..+..+++.+. .+.++
T Consensus 143 LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~ 216 (527)
T PRK14969 143 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRD 216 (527)
T ss_pred HhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHH
Confidence 885 34567888888888888888888 76 48899999999988888777654443322 23567777765 47888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 466 LANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 466 L~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.++++.+... +...|+.+++...+
T Consensus 217 al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 217 ALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 88888877654 45568877776654
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.57 E-value=3.5e-14 Score=150.68 Aligned_cols=209 Identities=29% Similarity=0.460 Sum_probs=137.7
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---EEEEechhh
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 326 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---f~~vs~s~~ 326 (720)
..++-+++|.+|+++...+ ..++..+-... ++| +++|+||||||||+|||.|+....-+ |+.+|..
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~-------~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-- 199 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------RIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-- 199 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcC-------CCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc--
Confidence 3456689999999988765 33333222211 122 69999999999999999999988766 7777663
Q ss_pred HHHHhhhchHHHHHHHHHHHh-----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 327 VEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
......+|++|+++++ ....|||||||+.+-+. . ...+|-..+ ++.|++|+|
T Consensus 200 -----~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-----------Q---QD~fLP~VE----~G~I~lIGA 256 (554)
T KOG2028|consen 200 -----NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-----------Q---QDTFLPHVE----NGDITLIGA 256 (554)
T ss_pred -----ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-----------h---hhcccceec----cCceEEEec
Confidence 3345678999999865 34579999999998321 1 223444333 567999988
Q ss_pred e--CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc---C--C---CCcc------cccHHHHHHhCCCCcHHH
Q 005003 402 T--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---N--K---KFDA------DVSLDVIAMRTPGFSGAD 465 (720)
Q Consensus 402 T--N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~---~--~---~l~~------dvdl~~LA~~t~G~Sgad 465 (720)
| |..-.|..+|++ |+ +++.+...+.+....||..... + . ++.. +--++.++..+.|-..+.
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 7 444478999999 55 4677888888888888876332 1 1 1111 112677888888755444
Q ss_pred HHHHHHHH-HHHHHHhC---CCccCHHHHHHHHHH
Q 005003 466 LANLLNEA-AILAGRRG---KAAISSKEIDDSIDR 496 (720)
Q Consensus 466 L~~lv~eA-a~~A~r~~---~~~It~~dl~~Al~~ 496 (720)
| |.++.+ .+...|.| +..++.+|+.+.+.+
T Consensus 334 L-N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 334 L-NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred H-HHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 4 333333 23333444 457888888888765
No 98
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.56 E-value=4.8e-14 Score=170.58 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=144.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+-.++.++|.++..+++.+++. ... ..+++|+||||||||++++++|... +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~---r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS---RRT---------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh---cCC---------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 45579999999996555555443 211 2368999999999999999999875 6788999
Q ss_pred echhhH--HHHhhhchHHHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 322 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 322 s~s~~~--~~~~G~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
+.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+.. .+. ....+.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~---~d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGA---MDAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cch---hHHHHHhchhh----hcCceEE
Confidence 888776 46788889999999999865 45899999999999754321 111 12233333222 3567999
Q ss_pred EEEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-----cHHHHHHhCCCCc-----H
Q 005003 399 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-----SLDVIAMRTPGFS-----G 463 (720)
Q Consensus 399 IaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-----dl~~LA~~t~G~S-----g 463 (720)
|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.....+.....+ .+...+..+.+|- |
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99999764 47999999 997 68999999999999998876655443332 2445555554442 3
Q ss_pred HHHHHHHHHHHHHHH
Q 005003 464 ADLANLLNEAAILAG 478 (720)
Q Consensus 464 adL~~lv~eAa~~A~ 478 (720)
.---.++++|+..+.
T Consensus 383 dkAidlld~a~a~~~ 397 (852)
T TIGR03346 383 DKAIDLIDEAAARIR 397 (852)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344567777776553
No 99
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=9.1e-14 Score=154.85 Aligned_cols=179 Identities=26% Similarity=0.341 Sum_probs=115.3
Q ss_pred cc-ccccchHHHHHHHHHHHH----hcCchhhhhccCc-CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-
Q 005003 256 FD-DVAGVDEAKQDFMEVVEF----LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE- 328 (720)
Q Consensus 256 f~-dI~G~de~k~eL~eiv~~----l~~p~~~~~~g~~-~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~- 328 (720)
++ .|+|++++|+.+...+.. +....... -... ...++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD-DDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccc-cccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 44 389999999998766532 21111000 0112 2358999999999999999999999999999999988764
Q ss_pred HHhhhchHH-HHHHHHHH----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------C
Q 005003 329 MFVGVGASR-VRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------G 392 (720)
Q Consensus 329 ~~~G~~~~~-vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~ 392 (720)
.|+|..... +..++..+ ....++||||||||.+..++.......+-..+.+++.||..||+-. .
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 567764433 34444332 2346799999999999766332111112222346667777776531 1
Q ss_pred CCcEEEEEEeCCCC----------------------------------------------------ccchhhcCCCcccc
Q 005003 393 NTGIIVIAATNRAD----------------------------------------------------ILDSALLRPGRFDR 420 (720)
Q Consensus 393 ~~~ViVIaaTN~p~----------------------------------------------------~LD~ALlrpgRFdr 420 (720)
..+.++|.|+|-.. -+.|+++- |+|.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCe
Confidence 12345555555300 02334443 8998
Q ss_pred eeeecCCCHHHHHHHHH
Q 005003 421 QVTVDVPDIRGRTEILK 437 (720)
Q Consensus 421 ~I~i~~Pd~~eR~~IL~ 437 (720)
.+.+...+.++..+|+.
T Consensus 306 iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 306 VATLEELDEEALVRILT 322 (412)
T ss_pred eeecCCCCHHHHHHHHH
Confidence 99999999999988886
No 100
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56 E-value=8.3e-14 Score=164.52 Aligned_cols=212 Identities=24% Similarity=0.275 Sum_probs=142.7
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.++.++.+|+|++|++....+...+...+... . ..+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~~--------~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD--------R-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 34566789999999999886433333323221 1 2279999999999999999999999999999887531
Q ss_pred HHHhhhchHHHHHHHHHHH-----hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 328 EMFVGVGASRVRDLFKKAK-----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
+...+++.++.+. .....+|||||+|.+. .. ..+.|+..++ +..+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~---qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KA---QQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HH---HHHHHHHHhc----CceEEEEEec
Confidence 1123344444432 1345799999999982 11 2344555554 3457788776
Q ss_pred CC--CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC-------CCCc-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005003 403 NR--ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-------KKFD-ADVSLDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 403 N~--p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~-------~~l~-~dvdl~~LA~~t~G~SgadL~~lv~e 472 (720)
+. ...+++++++ |. ..+.+++++.+++..+++..+.. ..+. ++..++.|++...| +.+++.++++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 43 3468899998 64 46899999999999999987752 1121 12236778887754 78888888888
Q ss_pred HHHHHHHhC--CCccCHHHHHHHHHHH
Q 005003 473 AAILAGRRG--KAAISSKEIDDSIDRI 497 (720)
Q Consensus 473 Aa~~A~r~~--~~~It~~dl~~Al~~v 497 (720)
|...+...+ ...|+.+++.+++.+.
T Consensus 221 a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 221 AVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHhcccCCCCceeccHHHHHHHHHHh
Confidence 775442222 2247888888887653
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=159.80 Aligned_cols=206 Identities=18% Similarity=0.212 Sum_probs=147.3
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++.++.+|+||+|++.+++.|+..+.. .++|..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 567788999999999999998888752 2356678999999999999999999987652
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
++.++++. ..+...+|++.+.+.. ....|++|||+|.+. ..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~ 133 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TA 133 (584)
T ss_pred HHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HH
Confidence 11121110 1133455665554432 234699999999982 23
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~ 457 (720)
..|.||..|+. ....+++|.+|+.++.+.+.+++ |. .+++|..++.++..+.++..+.+.....+ ..+..++..
T Consensus 134 A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~ 208 (584)
T PRK14952 134 GFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67888888884 45578888888888999999998 65 47899999999888888887765543322 235556665
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+. .+.+++.++++.+...+ +...||.+++...+
T Consensus 209 s~-GdlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 209 GG-GSPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred cC-CCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 54 57888888888775443 35578887776654
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9e-14 Score=160.35 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=145.5
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 317 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------- 317 (720)
.++..+.+|+||+|++.+++.|...+..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 45677889999999999999888887532 234579999999999999999999988763
Q ss_pred --------------EEEEechhhHHHHhhhchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 318 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 318 --------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
++.++++. ..+...++.+.+.+. .....||||||+|.+. ...
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a 135 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REA 135 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHH
Confidence 33333211 112233444433332 2335799999999982 234
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhC
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 458 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t 458 (720)
+|.|+..|+. ....+++|.+||.++.+.+.+++ |+. .++|+.++.++...+++..+...... .+..++.+++.+
T Consensus 136 ~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s 210 (624)
T PRK14959 136 FNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA 210 (624)
T ss_pred HHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6788888875 33568888889988888888888 774 78999999999998888776654432 222366777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
.| +.+++.++++.+. ..+...|+.+++.+++
T Consensus 211 ~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 211 AG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred CC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 64 5666667766543 2355689999888776
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=3.5e-13 Score=139.76 Aligned_cols=207 Identities=13% Similarity=0.144 Sum_probs=132.8
Q ss_pred cCCCCCccccc-c-chHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 250 PNTGVTFDDVA-G-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 250 ~~~~~~f~dI~-G-~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
-.+..+|++.+ | ...+...++++.. .+. +.+++||||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---QEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---CCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 45567899988 4 3344444444332 211 2379999999999999999999865 4557777776
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCc-EEEEEEeC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATN 403 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~-ViVIaaTN 403 (720)
+.... ..++.+.... ..+|+|||++.+.. ....++.+..++..+- .+++ .+++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCCC
Confidence 54321 1122222222 25899999999832 2334444444444332 1233 35555556
Q ss_pred CCCc---cchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 404 RADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 404 ~p~~---LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
.|.. +.|.|.+ |+. .++.+..|+.+++.++++.++....+.- +.-++.++++..| +.+.+.++++.....+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 6655 5789999 886 5889999999999999988665443332 2226778887775 7888999998864333
Q ss_pred HHhCCCccCHHHHHHHH
Q 005003 478 GRRGKAAISSKEIDDSI 494 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al 494 (720)
...+..||.+.+.+++
T Consensus 218 -l~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 -ITAQRKLTIPFVKEIL 233 (235)
T ss_pred -HhcCCCCCHHHHHHHH
Confidence 3334569988887765
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-13 Score=158.06 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=143.6
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++.++.+|+|++|++.+++.|...+..- +.+..+||+||||+|||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 4567789999999999999888777532 345579999999999999999999987641
Q ss_pred -------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 318 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 318 -------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
++.+++. ...+...++++.+.+.. ....|++|||+|.+. ....
T Consensus 77 ~sC~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~ 136 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSF 136 (546)
T ss_pred HHHHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHH
Confidence 2222211 01123345666655532 234699999999982 2356
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~ 459 (720)
|.||..|+. +...+++|.+|+.+..+.+.+++ |+ ..+++..++.++....++..+...... .+..+..++..+.
T Consensus 137 naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 137 NALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 778888874 34567777777778888888888 77 488999999999888887766554433 2233567777775
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
.+.+++.++++.+.... + ..|+.+++.++
T Consensus 212 -GdlR~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 212 -GSLRDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred -CCHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 47788888887776543 2 46777777764
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.2e-13 Score=165.07 Aligned_cols=213 Identities=19% Similarity=0.177 Sum_probs=147.0
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEE-----EEe
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-----SIS 322 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~-----~vs 322 (720)
.+++.+.+|+||+|++.+++.|+..+..- ++++.+||+||+|||||++|+.||+.++|.-- --.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 35678889999999999999988887632 34557999999999999999999999875210 001
Q ss_pred chhhHHHH------------hh---hchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHH
Q 005003 323 GSEFVEMF------------VG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 383 (720)
Q Consensus 323 ~s~~~~~~------------~G---~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~L 383 (720)
|....... .+ .+...+|++.+.+. .....|+||||+|.+. ....|.|
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~NaL 140 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNAL 140 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHHH
Confidence 11111100 00 12344555544432 2345799999999992 3467788
Q ss_pred HhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCc
Q 005003 384 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFS 462 (720)
Q Consensus 384 L~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~S 462 (720)
|+.|+.. ...+++|.+|+.++.|-+.|++ |+ .+++|..++.++..++|+..+.+..+..+ ..+..+++...| +
T Consensus 141 LK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888753 4567888888888889899988 66 47899999999988888887765544322 235666766655 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 463 GADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 463 gadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
.+++.++++..... .+...||.+++...+
T Consensus 215 lR~Al~eLEKLia~---~~~~~IT~e~V~all 243 (824)
T PRK07764 215 VRDSLSVLDQLLAG---AGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHHHhh---cCCCCCCHHHHHHHh
Confidence 77787777775533 245568888776544
No 106
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=3.5e-13 Score=141.99 Aligned_cols=187 Identities=25% Similarity=0.304 Sum_probs=118.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechh------hHHHHhhhchHHHHH--------------------HHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE------FVEMFVGVGASRVRD--------------------LFKKA 345 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~------~~~~~~G~~~~~vr~--------------------lF~~A 345 (720)
++||+||||||||++|+++|...|.|++.++|.. ++..+.+.....+.+ .+..|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 7999999999999999999999999999998754 222222211111111 11122
Q ss_pred HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc----Cc-------cCCCcEEEEEEeCCCC-----ccc
Q 005003 346 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----GF-------EGNTGIIVIAATNRAD-----ILD 409 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld----g~-------~~~~~ViVIaaTN~p~-----~LD 409 (720)
.. .+.+|+||||+.+ +.+.+..+..+|.+-. +. ..+.++.||+|+|... .++
T Consensus 103 ~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 103 VR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 22 2469999999997 3344444455443210 00 1224678999999753 568
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc--cHHHHHHh------CCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMR------TPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~LA~~------t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
+++++ || ..+.++.|+.++..+|++.+.. .+... .+-.++.. ....+ .+..+.-|...+....
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVATQQDI 241 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHHcCC
Confidence 99999 88 4899999999999999998752 22111 01112111 11223 4555555555555566
Q ss_pred CCccCHHHHHHHHHHHHc
Q 005003 482 KAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 482 ~~~It~~dl~~Al~~v~~ 499 (720)
+..++.+|+.+.+..++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 242 PVDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCCCcHHHHHHHHHHhc
Confidence 788999999988877654
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.6e-13 Score=160.33 Aligned_cols=213 Identities=22% Similarity=0.331 Sum_probs=152.4
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE---Eec
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---ISG 323 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~---vs~ 323 (720)
+.++.++.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|+.+.++-.. -.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 456778899999999999999988888632 345679999999999999999999988664211 122
Q ss_pred hhhHH-------HH--hh---hchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh
Q 005003 324 SEFVE-------MF--VG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 387 (720)
Q Consensus 324 s~~~~-------~~--~G---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l 387 (720)
..... .+ .+ .+...+|++.+.+.. ....|++|||+|.+. ...++.||..|
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtL 142 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTL 142 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHh
Confidence 22111 00 01 234557787777653 234799999999982 23678888888
Q ss_pred cCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHHHH
Q 005003 388 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADL 466 (720)
Q Consensus 388 dg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~SgadL 466 (720)
+. ++..+++|.+|+.++.|.+.+++ |+. ++.+..|+.++....++..+....+..+ ..+..++..+.| +.+++
T Consensus 143 EE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~A 216 (725)
T PRK07133 143 EE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDA 216 (725)
T ss_pred hc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 34568888888889999999998 775 7899999999998888876655443322 236677777764 67777
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 467 ANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 467 ~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
.++++.+...+ ...|+.+++.+.+
T Consensus 217 lslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 77777765442 3348888887654
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.6e-13 Score=159.36 Aligned_cols=204 Identities=20% Similarity=0.343 Sum_probs=148.1
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 317 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------- 317 (720)
++.++.+|+||+|++.+++.|...+..- +.|..+|||||+|+|||++|+++|+.++++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 4667889999999999999998877532 356679999999999999999999987653
Q ss_pred -------------EEEEechhhHHHHhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 318 -------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 318 -------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
++.+++.. ..+...++++.+.+... ...|++|||+|.+. ....
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~ 136 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAF 136 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHH
Confidence 22222211 12344677777666432 23599999999982 2356
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCC
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 459 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~ 459 (720)
|.||..|+. +...+++|.+||.++.|.+.+++ |+. .++|..++.++....+...+.+..+. .+..+..+++.+.
T Consensus 137 naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~ 211 (576)
T PRK14965 137 NALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGD 211 (576)
T ss_pred HHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 888888884 35578888888999999999998 764 78899899888888777766554433 2233677787777
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
| +.+++.+++..+..+. + ..|+.+|+...
T Consensus 212 G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred C-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 5 6777878877666544 2 35888887655
No 109
>PRK08727 hypothetical protein; Validated
Probab=99.53 E-value=4.4e-13 Score=138.84 Aligned_cols=210 Identities=18% Similarity=0.210 Sum_probs=132.9
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
..+..+|++.++.+... +..+...... .....++|+||+|||||+|++++++++ +..+.+++..++
T Consensus 12 ~~~~~~f~~f~~~~~n~--~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGL--LAQLQALAAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCcCChhhccCCcHHH--HHHHHHHHhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 45567999998766532 1111111111 122469999999999999999997754 677888887665
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
... +.+.++... ...+|+|||+|.+..+ ...+..+..+++... .+..-+|+++.+.|.
T Consensus 81 ~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 81 AGR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRAR---AAGITLLYTARQMPD 138 (233)
T ss_pred hhh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCChh
Confidence 432 233444433 3469999999988422 223334444554432 222234444444566
Q ss_pred cc---chhhcCCCcc--cceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 407 IL---DSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 407 ~L---D~ALlrpgRF--dr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
.+ ++.|.+ || ...+.++.|+.+++.++++.++....+. ++..++.|+.++.| +.+.+.++++.....+...
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 44 789998 87 3478999999999999999876543333 22236778887764 5666666677665445444
Q ss_pred CCCccCHHHHHHHHHH
Q 005003 481 GKAAISSKEIDDSIDR 496 (720)
Q Consensus 481 ~~~~It~~dl~~Al~~ 496 (720)
+ ..||...+.+.+.+
T Consensus 216 ~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 K-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CCCCHHHHHHHHhh
Confidence 4 47999888887753
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.9e-13 Score=150.40 Aligned_cols=214 Identities=20% Similarity=0.352 Sum_probs=144.6
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
+.++..+.+|+|++|++.+++.+.+.+.. ...|.++|||||||+|||++|+++|+...++.....+..+
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567889999999999999888877752 1346689999999999999999999987653211111100
Q ss_pred ------HHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcE
Q 005003 327 ------VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI 396 (720)
Q Consensus 327 ------~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~V 396 (720)
.+.....+...++.+++.+.. ..+.||+|||+|.+. ...++.++..++. +....
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~--~~~~~ 139 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEE--PPAHA 139 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhC--CCCce
Confidence 000011223567777776643 234699999999872 1245677777764 23446
Q ss_pred EEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005003 397 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAI 475 (720)
Q Consensus 397 iVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~ 475 (720)
++|.+|+.+..+.+++.+ |+. .++++.|+.++...++...+.+.... .+..++.++..+.| +.+.+.+.++....
T Consensus 140 ~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 140 IFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 666677778888999988 663 78999999999888888776655442 23346777777654 66666666665554
Q ss_pred HHHHhCCCccCHHHHHHHHH
Q 005003 476 LAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 476 ~A~r~~~~~It~~dl~~Al~ 495 (720)
.+ +.. ||.+++++.+.
T Consensus 216 y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 216 FC---GKN-ITRQAVTENLN 231 (367)
T ss_pred hc---CCC-CCHHHHHHHhC
Confidence 43 333 88888776653
No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.8e-13 Score=157.28 Aligned_cols=207 Identities=18% Similarity=0.281 Sum_probs=146.7
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 317 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p--------- 317 (720)
+.++.++.+|++++|++.+++.+.+.+.. .+.|+++||+||||+|||++|+++|..+.+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45677889999999999999988877642 2345689999999999999999999987541
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
++.++++. ..+...+|++.+.+... ...|++|||+|.+- ..
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~ 134 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TS 134 (605)
T ss_pred ccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HH
Confidence 12222110 12334577777665432 23599999999982 12
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~ 457 (720)
..+.|+..|+. ++..+++|.+|+.++.+.+.+++ |+. .+++..|+.++....++..+...... .+..+..++..
T Consensus 135 A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l 209 (605)
T PRK05896 135 AWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL 209 (605)
T ss_pred HHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45778887774 34568888888889999999998 775 78999999999988888776554322 22236677777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.| +.+++.++++.+...+ +. .|+.+++.+.+
T Consensus 210 S~G-dlR~AlnlLekL~~y~---~~-~It~e~V~ell 241 (605)
T PRK05896 210 ADG-SLRDGLSILDQLSTFK---NS-EIDIEDINKTF 241 (605)
T ss_pred cCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHHHh
Confidence 765 6777777777754433 32 38888777653
No 112
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=1.2e-13 Score=165.01 Aligned_cols=165 Identities=22% Similarity=0.368 Sum_probs=121.9
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-------
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------- 328 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~------- 328 (720)
=+|+.|++++|+++.+.+...+.... .....++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35699999999999887775443211 11226999999999999999999999999999998765432
Q ss_pred --HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC-----cc--------CC
Q 005003 329 --MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GN 393 (720)
Q Consensus 329 --~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg-----~~--------~~ 393 (720)
.|.|....++...+..+....| ||+|||||.+..... + .....|+..+|. |. .-
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g-----~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----G-----DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----C-----CHHHHHHHHhccccEEEEecccccccccC
Confidence 3556666666666666544444 889999999964321 1 123455555552 11 12
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
+++++|||+|.. .++++|++ |++ .|.+..++.++..+|.+.|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 679999999987 49999999 996 899999999999999988874
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3e-13 Score=156.94 Aligned_cols=214 Identities=20% Similarity=0.259 Sum_probs=152.7
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE-----
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----- 321 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v----- 321 (720)
..+++.+.+|+||+|++.+++.|...+..- ++|.++||+||+|+|||++|+++|+.+++.....
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 445678889999999999999988877632 4566899999999999999999999887642111
Q ss_pred --------echhhHH--------HH--hhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 322 --------SGSEFVE--------MF--VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 322 --------s~s~~~~--------~~--~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
+|..+.+ .- ...+...+|++.+.+... ...|++|||+|.+. ...
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a 148 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAA 148 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHH
Confidence 1111111 00 012345678887776432 24799999999982 235
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhC
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRT 458 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t 458 (720)
.|.||..|+.. ...+++|.+|+.++.+.+.+++ |+. .+++..|+.++....++..+.+.....+ ..++.++..+
T Consensus 149 ~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a 223 (598)
T PRK09111 149 FNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAA 223 (598)
T ss_pred HHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67888888753 4557777778888888888888 764 7899999999998888887765544322 3366677777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
.| +.+++.++++.+... +...||.+++.+.+.
T Consensus 224 ~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 224 EG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred CC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 65 788888888776544 335699988887653
No 114
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.52 E-value=5.3e-13 Score=143.02 Aligned_cols=208 Identities=22% Similarity=0.294 Sum_probs=138.4
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC-----CCEE
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 319 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g-----~pf~ 319 (720)
.+|.++..+.+|+|++|.+++++.+...+.. . ..| +++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------NMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4577888999999999999999988877742 1 112 589999999999999999999873 3455
Q ss_pred EEechhhHHHHhhhchHHHHHHHHHHHh------cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005003 320 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 393 (720)
Q Consensus 320 ~vs~s~~~~~~~G~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~ 393 (720)
.+++++-. +...+++.+..... ..+.+|+|||+|.+. ... .+.|+..++....
T Consensus 73 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~---~~~L~~~le~~~~- 131 (319)
T PRK00440 73 ELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDA---QQALRRTMEMYSQ- 131 (319)
T ss_pred Eecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHH---HHHHHHHHhcCCC-
Confidence 55544311 11112222222211 235699999999882 122 2345555554333
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~e 472 (720)
...+|.++|.+..+.+++.+ |+. .++++.|+.++...+++.++.+.... .+..++.++..+.| +.+.+.+.++.
T Consensus 132 -~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 132 -NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred -CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34566677777777778887 765 68999999999999999887655442 22347777777654 55555555554
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH
Q 005003 473 AAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 473 Aa~~A~r~~~~~It~~dl~~Al~ 495 (720)
+... ...||.+++..++.
T Consensus 207 ~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHc-----CCCCCHHHHHHHhC
Confidence 4332 35799999987763
No 115
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=1.3e-13 Score=149.51 Aligned_cols=218 Identities=23% Similarity=0.368 Sum_probs=134.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-------CCCEEEEe--
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS-- 322 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs-- 322 (720)
.+++|++|+|++++++.+.-.+- ++. -.++||+|+||||||++||++|+-+ ++|+-..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999999997764321 111 1279999999999999999999977 33221111
Q ss_pred c-hhh---------------HHHHhhhchHHHHH--HHHHH-------------HhcCCeEEEEccchhcccccCCCCCC
Q 005003 323 G-SEF---------------VEMFVGVGASRVRD--LFKKA-------------KENAPCIVFVDEIDAVGRQRGTGIGG 371 (720)
Q Consensus 323 ~-s~~---------------~~~~~G~~~~~vr~--lF~~A-------------~~~~P~ILfIDEID~l~~~r~~~~~~ 371 (720)
+ .++ ++...+.++.++-. .++.+ ......+||||||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 0 000 00000111111100 00100 00112599999999982
Q ss_pred CChHHHHHHHHHHhhhcCc-----------cCCCcEEEEEEeCCCC-ccchhhcCCCcccceeeecCCCH-HHHHHHHHH
Q 005003 372 GNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKV 438 (720)
Q Consensus 372 ~~~e~~~~ln~LL~~ldg~-----------~~~~~ViVIaaTN~p~-~LD~ALlrpgRFdr~I~i~~Pd~-~eR~~IL~~ 438 (720)
.. ++..|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.++++.
T Consensus 142 --~~---~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 --DH---IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred --HH---HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 22 444455555321 1234689999999755 68999999 9999999998876 889999987
Q ss_pred hhcCCC----C------cc---------------cc--c------HHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhCCCc
Q 005003 439 HGSNKK----F------DA---------------DV--S------LDVIAMRTP-GFSGADLANLLNEAAILAGRRGKAA 484 (720)
Q Consensus 439 ~l~~~~----l------~~---------------dv--d------l~~LA~~t~-G~SgadL~~lv~eAa~~A~r~~~~~ 484 (720)
...... . .. .+ + +..++..+. .-.-+++. +++.|...|..+|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCe
Confidence 432110 0 00 00 0 122222332 12445665 9999999999999999
Q ss_pred cCHHHHHHHHHHHH
Q 005003 485 ISSKEIDDSIDRIV 498 (720)
Q Consensus 485 It~~dl~~Al~~v~ 498 (720)
|+.+|+..+..-++
T Consensus 294 V~~~Di~~~~~~vl 307 (334)
T PRK13407 294 VGRSHLRSVATMAL 307 (334)
T ss_pred eCHHHHHHHHHHhh
Confidence 99999988875544
No 116
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.4e-13 Score=153.36 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=146.6
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-------EEE
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 320 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p-------f~~ 320 (720)
.++.++.+|+|++|++.+++.++..+..- +.+..+|||||||+|||++|+.+|..+++. .-.
T Consensus 7 ~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc
Confidence 34567789999999999999888877532 234578999999999999999999987641 111
Q ss_pred -EechhhHH-----HH-----hhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 321 -ISGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 321 -vs~s~~~~-----~~-----~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
.+|..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+. ....+.|+.
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLLk 141 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALLK 141 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHHH
Confidence 01111110 00 01223445666555532 235799999999882 234577787
Q ss_pred hhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHH
Q 005003 386 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGA 464 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~Sga 464 (720)
.++.. +..+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++....++.++....+..+ ..+..++..+.| +.+
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77743 4456777777778888889888 765 7899999999999999988776554432 236677777664 677
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 465 DLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
++.++++.+... +...||.+++.+++
T Consensus 216 ~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 216 DAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 888888777644 34468888888765
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.52 E-value=2.4e-13 Score=139.63 Aligned_cols=203 Identities=20% Similarity=0.320 Sum_probs=124.8
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 325 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~ 325 (720)
.+..||++.+-.+.-+..+.-+-....++.. .-..++||||+|+|||+|.+|++++. +..++++++.+
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 3567999997444333333322222333321 12369999999999999999998864 67899999999
Q ss_pred hHHHHhhhchH-HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 326 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
|...+...... .+.++.+..+ ...+|+||++|.+..+ ...+.. +...++.+..+++.+|+++...
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~---------~~~q~~---lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK---------QRTQEE---LFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH---------HHHHHH---HHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc---------hHHHHH---HHHHHHHHHhhCCeEEEEeCCC
Confidence 98776543222 1222222222 3468999999999422 223333 3344444444556677777666
Q ss_pred CCc---cchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 405 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 405 p~~---LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
|.. +++.|.+ ||.. .+.+..||.+.|.+|++..+....+.-+.+ .+.++++.+ -+.++|..+++.-...+
T Consensus 141 P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 141 PSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 664 5677888 8876 889999999999999999887665553332 566777765 48889999988876655
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.1e-13 Score=153.25 Aligned_cols=205 Identities=21% Similarity=0.277 Sum_probs=147.1
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 317 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------- 317 (720)
.++.++.+|+||+|++.+++.|+..+..- +.|..+|||||||+|||++|+++|+.+.++
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 35677889999999999999998887522 356678999999999999999999987431
Q ss_pred --------------EEEEechhhHHHHhhhchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 318 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 318 --------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
++.+++++ ..+...++++.+.+... ...|++|||+|.+. ...
T Consensus 74 C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A 133 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEA 133 (535)
T ss_pred cHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHH
Confidence 22222211 01234567766654321 23599999999982 346
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhC
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 458 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t 458 (720)
.|.||..|+.. ...+.+|.+|+.+..+.+++++ |. ..+++..++.++..+.++..+...+.. .+..+..++..+
T Consensus 134 ~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 134 FNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 67888888854 4457777777888999999999 75 488999999998888888776654433 223467777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
.| +.+++.+++..+...+ ...||.+++.+.
T Consensus 209 ~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 65 8888888888877655 345777777654
No 119
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.1e-13 Score=155.04 Aligned_cols=211 Identities=19% Similarity=0.271 Sum_probs=148.3
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-------EEEE
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 321 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p-------f~~v 321 (720)
.+.++.+|+||+|++.+++.|+..+.. .+.|+.+|||||||+|||++|+++|+.+.++ .-.+
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456788999999999999998888752 1345679999999999999999999988652 1111
Q ss_pred -echhhHHH-------Hhh---hchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh
Q 005003 322 -SGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 386 (720)
Q Consensus 322 -s~s~~~~~-------~~G---~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ 386 (720)
+|..+.+. +.| .+...++++.+.+. .....|++|||+|.+. ...+|.||..
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~ 142 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKT 142 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHh
Confidence 11111100 111 12345666655443 2345699999999982 2367888888
Q ss_pred hcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHH
Q 005003 387 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGAD 465 (720)
Q Consensus 387 ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~Sgad 465 (720)
++. +...+++|.+|+.++.+.+++++ |+. .+++..++.++..+.++..+...... .+..+..++..+.| +.++
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~ 216 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRD 216 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 45678888888888999999998 775 68999999999988888777554433 22336677777765 7888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 466 LANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 466 L~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.++++.+...+ ...|+.+++.+.+
T Consensus 217 alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 217 AYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 888887766543 2458888877654
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.51 E-value=6.3e-13 Score=154.88 Aligned_cols=219 Identities=17% Similarity=0.177 Sum_probs=144.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-------C---CCEEEEech
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------G---VPFFSISGS 324 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------g---~pf~~vs~s 324 (720)
.-+.|.|.++..++|..++...-. |..+...++|+|+||||||++++.+..++ + +.+++++|.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 346788888888888887765322 11122335799999999999999997755 2 567899995
Q ss_pred hhHHH----------Hhhh-------chHHHHHHHHHHH--hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 325 EFVEM----------FVGV-------GASRVRDLFKKAK--ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 325 ~~~~~----------~~G~-------~~~~vr~lF~~A~--~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
.+... +.+. ....+..+|.... ....+||+|||||.+..+ .+..+..|+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHH
Confidence 43321 1111 1234556666542 234579999999999532 2455666665
Q ss_pred hhcCccCCCcEEEEEEeCC---CCccchhhcCCCcccc-eeeecCCCHHHHHHHHHHhhcCCC-CcccccHHHHHHhCCC
Q 005003 386 EMDGFEGNTGIIVIAATNR---ADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPG 460 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~---p~~LD~ALlrpgRFdr-~I~i~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~LA~~t~G 460 (720)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+.... .-.+..++.+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 433 23457999999986 6678888888 6654 588899999999999999877532 1122225666664432
Q ss_pred C--cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 461 F--SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 461 ~--SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
. ..+..-.+|+.|+.. ++...|+.+|+.+|..++.
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 2 333444556666654 3456899999999998763
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.50 E-value=7.6e-13 Score=145.81 Aligned_cols=242 Identities=21% Similarity=0.293 Sum_probs=171.3
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 324 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s 324 (720)
-.+..+|++++.-+.......-....-..|.. .-..++||||.|.|||+|++|+++++ +..+++++.+
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 35678999998877766555544444444432 22369999999999999999998876 3468999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
+|...++......-.+-|+.-. .-.+++||+|+.+.++... ..+.-.++|.+.. +++.+|+.+...
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~~-------~~kqIvltsdr~ 218 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALLE-------NGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-----HHHHHHHHHHHHh-------cCCEEEEEcCCC
Confidence 9988877665544445566655 3468999999999643211 2233334444433 455677777667
Q ss_pred CCc---cchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 405 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 405 p~~---LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
|.. ++|.|.+ ||.+ .+.+.+||.+.|..||+.......+.-+. -...++.+.. -+.++|+.+++.....|.
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFAL 295 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH
Confidence 765 4588988 9987 78999999999999999976655544322 2566676655 588999999999998887
Q ss_pred HhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHh
Q 005003 479 RRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGT 527 (720)
Q Consensus 479 r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~ 527 (720)
..++ .||.+.+.+++........ + +...++-+.|+.+
T Consensus 296 ~~~~-~iTi~~v~e~L~~~~~~~~----------~-itie~I~~~Va~~ 332 (408)
T COG0593 296 FTKR-AITIDLVKEILKDLLRAGE----------K-ITIEDIQKIVAEY 332 (408)
T ss_pred hcCc-cCcHHHHHHHHHHhhcccc----------c-CCHHHHHHHHHHH
Confidence 7665 8999999999887654432 2 4555566666554
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.8e-13 Score=149.83 Aligned_cols=216 Identities=15% Similarity=0.245 Sum_probs=145.7
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEE--------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 319 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~-------- 319 (720)
.++.++.+|++|+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 3567788999999999999988877752 245668999999999999999999999876310
Q ss_pred --EEech------hhHH-------HHhh---hchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHH
Q 005003 320 --SISGS------EFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 377 (720)
Q Consensus 320 --~vs~s------~~~~-------~~~G---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~ 377 (720)
.-.|. .+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. .
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------------~ 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------------I 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------H
Confidence 00111 1110 0111 123456666555532 223699999999982 1
Q ss_pred HHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHH
Q 005003 378 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 456 (720)
Q Consensus 378 ~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~ 456 (720)
...+.|+..++. +....++|.+|+.++.+-+++.+ |.. .+++..++.++..+.++..+...... .+..++.++.
T Consensus 142 ~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 245667777764 33456666677777888888887 664 78899999888888887766544332 2223667777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 005003 457 RTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 494 (720)
Q Consensus 457 ~t~G~SgadL~~lv~eAa~~A~r-~~~~~It~~dl~~Al 494 (720)
.+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 217 ~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 7764 677777777777666532 234589998887776
No 123
>PRK06620 hypothetical protein; Validated
Probab=99.49 E-value=6.2e-13 Score=136.13 Aligned_cols=199 Identities=15% Similarity=0.214 Sum_probs=128.0
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCC--ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~p--rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
...+..+|++++-.+........+..+...| + ..| +.++||||||+|||+|++++++..+..++ +....
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~ 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF 78 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh
Confidence 3456678999887764443333333322222 1 123 57999999999999999999998875332 21111
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
. .+.+ + ...+|+|||||.+ . +..+-.+++.+ ..+++.++|+++..|.
T Consensus 79 ~-----------~~~~----~-~~d~lliDdi~~~-----------~---~~~lf~l~N~~---~e~g~~ilits~~~p~ 125 (214)
T PRK06620 79 N-----------EEIL----E-KYNAFIIEDIENW-----------Q---EPALLHIFNII---NEKQKYLLLTSSDKSR 125 (214)
T ss_pred c-----------hhHH----h-cCCEEEEeccccc-----------h---HHHHHHHHHHH---HhcCCEEEEEcCCCcc
Confidence 1 0111 1 2368999999954 0 11222333332 2345678888886665
Q ss_pred c--cchhhcCCCcccc--eeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 407 I--LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 407 ~--LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
. + ++|++ |+.. ++.+..||.+.+..+++.++....+.- +..++.|+.+..| +.+.+.++++.....+...+
T Consensus 126 ~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~ 201 (214)
T PRK06620 126 NFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK 201 (214)
T ss_pred ccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC
Confidence 4 5 78888 8864 789999999999999988876544332 2236777877764 78889999988654444433
Q ss_pred CCccCHHHHHHHH
Q 005003 482 KAAISSKEIDDSI 494 (720)
Q Consensus 482 ~~~It~~dl~~Al 494 (720)
..||...+.+++
T Consensus 202 -~~it~~~~~~~l 213 (214)
T PRK06620 202 -RKITISLVKEVL 213 (214)
T ss_pred -CCCCHHHHHHHh
Confidence 568988887764
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=99.49 E-value=1.3e-12 Score=135.55 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=136.0
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
...+..+|++.+.... ....+.+..+... .+.....+++|+||+|||||+|++++++++ +..+++++..+
T Consensus 11 ~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-----~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 11 RLRDDATFANYYPGAN--AAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCCcccccccCcCCh--HHHHHHHHHHhhc-----cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 3456678999883332 2233333222110 011123579999999999999999998754 67889999988
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+.... ..+.+..+.. .+|+|||++.+..+ ...++.+..+++. +..+++.++++++..|
T Consensus 84 ~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~---~~~~g~~ilits~~~p 141 (234)
T PRK05642 84 LLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNR---LRDSGRRLLLAASKSP 141 (234)
T ss_pred HHhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHH---HHhcCCEEEEeCCCCH
Confidence 77531 1233333222 58999999988322 2223334444433 3334566777777665
Q ss_pred Cc---cchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 406 DI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 406 ~~---LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
.. ..|.|.+ ||. ..+.+..|+.++|.++++..+....+. ++.-++.++++..+ +.+.+.++++.-...+..
T Consensus 142 ~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 142 RELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 43 3688888 884 477889999999999999655444332 22236777777764 888999998877654433
Q ss_pred hCCCccCHHHHHHHH
Q 005003 480 RGKAAISSKEIDDSI 494 (720)
Q Consensus 480 ~~~~~It~~dl~~Al 494 (720)
.+..||..-+.+++
T Consensus 219 -~~~~it~~~~~~~L 232 (234)
T PRK05642 219 -AQRKLTIPFLKETL 232 (234)
T ss_pred -cCCcCCHHHHHHHh
Confidence 34568887777665
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=4.5e-13 Score=140.30 Aligned_cols=195 Identities=23% Similarity=0.257 Sum_probs=131.1
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC------E
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------F 318 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p------f 318 (720)
..+.+++.+.+|+|++|++.+.+.|...+..-..| ++|||||||||||+.|+++|.++..| +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 44778889999999999999999999988752222 69999999999999999999998763 2
Q ss_pred EEEechhhHHHHhhhchHHHHHHHHHHHh---------cCC-eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc
Q 005003 319 FSISGSEFVEMFVGVGASRVRDLFKKAKE---------NAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 388 (720)
Q Consensus 319 ~~vs~s~~~~~~~G~~~~~vr~lF~~A~~---------~~P-~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld 388 (720)
...+.|+....- ....++. -|.+... ..| .|++|||.|.+. ....+.|..-|+
T Consensus 92 l~lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTME 154 (346)
T ss_pred hhhccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHh
Confidence 233444332211 1111111 1333221 112 699999999993 346677888888
Q ss_pred CccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHhCCCCcHHHHH
Q 005003 389 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLA 467 (720)
Q Consensus 389 g~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~t~G~SgadL~ 467 (720)
.+. ..+++|..||..+.+.+.+.+ |.. .+.|+..+.+.....|+..+.+..+.-+- .++.+++.+.| +-++..
T Consensus 155 ~~s--~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 DFS--RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 753 457888889999999999999 776 56676666666666666666555444332 26777877665 344444
Q ss_pred HHHHHHH
Q 005003 468 NLLNEAA 474 (720)
Q Consensus 468 ~lv~eAa 474 (720)
..++.+.
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 4444443
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.3e-12 Score=147.67 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=142.4
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 317 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------- 317 (720)
.++..+.+|+||+|++.+++.+...+..- +.|..+|||||||+|||++|+++|+.+.++
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 35567889999999999999888877531 346689999999999999999999987542
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
++.+++.. ..+...++.+-+... .....|++|||+|.+. ..
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~ 136 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KE 136 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HH
Confidence 22222211 012234444433332 2346799999999982 22
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~ 457 (720)
..+.|+..++.. ...+++|.+||.++.+.+++.+ |+. .+++..++.++....+...+.+.+.. .+..++.++..
T Consensus 137 ~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 137 AFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467788888753 4567788888888999999998 775 78999999999888888766544432 22336777877
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.| +.+++.+.++..... .+ ..|+.+++.+++
T Consensus 212 s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 212 AQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred cCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 764 556666666554433 23 348888887665
No 127
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=1.4e-12 Score=143.75 Aligned_cols=177 Identities=29% Similarity=0.446 Sum_probs=126.3
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhc-cCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-HHhh-
Q 005003 257 DDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG- 332 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~-l~~p~~~~~~-g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~~~G- 332 (720)
+-|+|++++|+.+...+.. ++.......+ .-..|+++||+||||||||++|+++|+.++.||+.+++..+.+ .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 3489999999998776653 2221111111 1235789999999999999999999999999999999887764 5666
Q ss_pred hchHHHHHHHHHH-------------------------------------------------------------------
Q 005003 333 VGASRVRDLFKKA------------------------------------------------------------------- 345 (720)
Q Consensus 333 ~~~~~vr~lF~~A------------------------------------------------------------------- 345 (720)
..+..++.+|+.|
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3445555555444
Q ss_pred ------------------------------------------------------------------------HhcCCeEE
Q 005003 346 ------------------------------------------------------------------------KENAPCIV 353 (720)
Q Consensus 346 ------------------------------------------------------------------------~~~~P~IL 353 (720)
+...-.||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 00134699
Q ss_pred EEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCcEEEEEEeC----CCCccchhhcCCCcccce
Q 005003 354 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQ 421 (720)
Q Consensus 354 fIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~~~ViVIaaTN----~p~~LD~ALlrpgRFdr~ 421 (720)
||||||.++.+... .+.+-..+-+...||..++|-. ...++++||+.- .|+.|=|.|.- ||-..
T Consensus 252 fiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 327 (441)
T TIGR00390 252 FIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIR 327 (441)
T ss_pred EEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 99999999865421 2233344557788888888742 245789998864 36666677775 99999
Q ss_pred eeecCCCHHHHHHHHH
Q 005003 422 VTVDVPDIRGRTEILK 437 (720)
Q Consensus 422 I~i~~Pd~~eR~~IL~ 437 (720)
+.+..++.++..+||.
T Consensus 328 v~L~~L~~edL~rILt 343 (441)
T TIGR00390 328 VELQALTTDDFERILT 343 (441)
T ss_pred EECCCCCHHHHHHHhc
Confidence 9999999999988883
No 128
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=1.5e-12 Score=143.41 Aligned_cols=176 Identities=30% Similarity=0.441 Sum_probs=128.3
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhccC-cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-HHhh-h
Q 005003 258 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGA-RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 333 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~-~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~~~G-~ 333 (720)
.|+|++++|+.+...+.. ++.......+.. ..|+++||+||||||||++|+++|+.++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999877743 211110001111 13689999999999999999999999999999999998886 5777 3
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 005003 334 GASRVRDLFKKAK------------------------------------------------------------------- 346 (720)
Q Consensus 334 ~~~~vr~lF~~A~------------------------------------------------------------------- 346 (720)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3556666666551
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 005003 347 -----------------------------------------------------------------------ENAPCIVFV 355 (720)
Q Consensus 347 -----------------------------------------------------------------------~~~P~ILfI 355 (720)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012369999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCcEEEEEEeC----CCCccchhhcCCCcccceee
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQVT 423 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~~~ViVIaaTN----~p~~LD~ALlrpgRFdr~I~ 423 (720)
||||.++.+.+. ++.+-..+.+...||..++|-. ...+|++||+.- .|+.|-|.|.- ||-.++.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999876432 2333344557788888888742 345789998864 36667788876 9999999
Q ss_pred ecCCCHHHHHHHHH
Q 005003 424 VDVPDIRGRTEILK 437 (720)
Q Consensus 424 i~~Pd~~eR~~IL~ 437 (720)
+..++.++..+||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999988883
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.47 E-value=1.2e-12 Score=145.33 Aligned_cols=180 Identities=26% Similarity=0.351 Sum_probs=114.7
Q ss_pred cccccchHHHHHHHHHHHH----hcCc-hhhhhccCcC-CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-H
Q 005003 257 DDVAGVDEAKQDFMEVVEF----LKKP-ERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-M 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~----l~~p-~~~~~~g~~~-prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~ 329 (720)
+-|+|++++++.+...+.. +... ..-...+... +.++||+||||||||++|+++|..++.||..++++.+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 3479999999998876632 2210 0000011112 358999999999999999999999999999999887653 4
Q ss_pred Hhhhch-HHHHHHHHHH----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-----------C
Q 005003 330 FVGVGA-SRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-----------N 393 (720)
Q Consensus 330 ~~G~~~-~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-----------~ 393 (720)
|+|... ..+..++..+ ....++||||||||.+.+++.......+-..+.+++.||..|+|... .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 666642 3333443322 23467899999999997654322111111122455666666665321 1
Q ss_pred CcEEEEEEeCCC---------------------------C-----------------------ccchhhcCCCcccceee
Q 005003 394 TGIIVIAATNRA---------------------------D-----------------------ILDSALLRPGRFDRQVT 423 (720)
Q Consensus 394 ~~ViVIaaTN~p---------------------------~-----------------------~LD~ALlrpgRFdr~I~ 423 (720)
.+.++|.|+|-. + .+.|+++- |+|..+.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEee
Confidence 246777777751 0 02344544 8888888
Q ss_pred ecCCCHHHHHHHHHH
Q 005003 424 VDVPDIRGRTEILKV 438 (720)
Q Consensus 424 i~~Pd~~eR~~IL~~ 438 (720)
+.+.+.++..+|+..
T Consensus 315 f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 315 LEKLDEEALIAILTK 329 (413)
T ss_pred cCCCCHHHHHHHHHH
Confidence 888899988888765
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.5e-12 Score=151.93 Aligned_cols=209 Identities=18% Similarity=0.274 Sum_probs=142.2
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE----Eech
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS----ISGS 324 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~----vs~s 324 (720)
++.++.+|++++|++++++.|...+..-+ .+.++||+||||+|||++|+++|+.+++.... -.|.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~r-----------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISNR-----------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 45677899999999999999988886422 34479999999999999999999998763110 0111
Q ss_pred ---h-----------hH--HHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHH
Q 005003 325 ---E-----------FV--EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 384 (720)
Q Consensus 325 ---~-----------~~--~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL 384 (720)
. +. +.....+...+|++.+.+.. ....|++|||+|.+. ....|.||
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLL 142 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALL 142 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHH
Confidence 0 00 01112345678888877643 224699999999982 23567888
Q ss_pred hhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcH
Q 005003 385 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 463 (720)
Q Consensus 385 ~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~Sg 463 (720)
..|+. ....+++|.+|+.++.+-+.+++ |+. .++|..++.++....+...+.+.... .+..+..+++.+.| +.
T Consensus 143 K~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~l 216 (620)
T PRK14948 143 KTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GL 216 (620)
T ss_pred HHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 88884 44567888888888889899988 774 67888888887777666655443322 12236777777765 45
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 464 ADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 464 adL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
+++.++++..... . ..|+.+++.+.
T Consensus 217 r~A~~lLeklsL~---~--~~It~e~V~~l 241 (620)
T PRK14948 217 RDAESLLDQLSLL---P--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHHHHHHhc---c--CCCCHHHHHHH
Confidence 6666666654333 1 24776665543
No 131
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.46 E-value=1.1e-12 Score=142.95 Aligned_cols=224 Identities=21% Similarity=0.269 Sum_probs=141.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-------CCCEEEE--
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI-- 321 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~v-- 321 (720)
.+...|++|+|++++|..|.-.+. +|. ..|+||.||+|||||++||+++.-+ +.||..-
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~---~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVI---DPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhcc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 456789999999999997765442 332 2489999999999999999997754 2344300
Q ss_pred ----echhhHHH-------------------HhhhchHHH------HHHHHHHH---------hcCCeEEEEccchhccc
Q 005003 322 ----SGSEFVEM-------------------FVGVGASRV------RDLFKKAK---------ENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 322 ----s~s~~~~~-------------------~~G~~~~~v------r~lF~~A~---------~~~P~ILfIDEID~l~~ 363 (720)
.|++.... -.+.++.++ ...|.... +....+||||||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 01111100 011122211 11121111 1123699999999982
Q ss_pred ccCCCCCCCChHHHHHHHHHHhhhcC---------c--cCCCcEEEEEEeCCCC-ccchhhcCCCcccceeeecCCC-HH
Q 005003 364 QRGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IR 430 (720)
Q Consensus 364 ~r~~~~~~~~~e~~~~ln~LL~~ldg---------~--~~~~~ViVIaaTN~p~-~LD~ALlrpgRFdr~I~i~~Pd-~~ 430 (720)
.. +...|+..|+. . ..+..+++|++.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 158 ----------~~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 ----------DH---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred ----------HH---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 22 33344544432 1 1234689999888755 69999999 999999999997 58
Q ss_pred HHHHHHHHhhcCC--CCc-----------------------cccc--------HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 431 GRTEILKVHGSNK--KFD-----------------------ADVS--------LDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 431 eR~~IL~~~l~~~--~l~-----------------------~dvd--------l~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
.+.+|++...... ... ..+. +..++..+.--|++--..+++-|..+|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 8999998753211 000 0000 223333343345666668889999999
Q ss_pred HHhCCCccCHHHHHHHHHHHHcCcc
Q 005003 478 GRRGKAAISSKEIDDSIDRIVAGME 502 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~~v~~~~~ 502 (720)
.-+|+..|+.+|+..+..-++....
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999887765543
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.46 E-value=2.8e-12 Score=149.94 Aligned_cols=218 Identities=22% Similarity=0.340 Sum_probs=136.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEE
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 320 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~ 320 (720)
..+.+|++++|++.+.+.+.+.+. .+ .|.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~~---------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---SP---------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---cC---------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999999987655442 11 24479999999999999999997654 468999
Q ss_pred EechhhH-------HHHhhhchH----HHHHHHHH----------HHhcCCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 321 ISGSEFV-------EMFVGVGAS----RVRDLFKK----------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 321 vs~s~~~-------~~~~G~~~~----~vr~lF~~----------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
++|..+. ..+.+.... ..+..+.. .......+|||||++.+ +...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHH
Confidence 9987642 111221110 01111110 01123469999999988 2333333
Q ss_pred HHHHHhhhc-----C-c-----------------cCCCcEEEEEEe-CCCCccchhhcCCCcccceeeecCCCHHHHHHH
Q 005003 380 LNQLLTEMD-----G-F-----------------EGNTGIIVIAAT-NRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 435 (720)
Q Consensus 380 ln~LL~~ld-----g-~-----------------~~~~~ViVIaaT-N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~I 435 (720)
+..++..-. + + ....++++|++| +.++.++++|++ ||. .+.+++++.++...|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 434443210 0 0 012346666655 568889999988 887 678888999999999
Q ss_pred HHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHH
Q 005003 436 LKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRR--------GKAAISSKEIDDSIDR 496 (720)
Q Consensus 436 L~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~--------~~~~It~~dl~~Al~~ 496 (720)
++..+......- +..++.++..+. .++...+++..+...+..+ +...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 999887644321 222555666554 4555556666555444222 2347899999988864
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.45 E-value=8.1e-13 Score=149.38 Aligned_cols=209 Identities=22% Similarity=0.324 Sum_probs=158.1
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE--EEEechh-
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--FSISGSE- 325 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf--~~vs~s~- 325 (720)
.++++.+|+|++|++.+...|.+.+..-+. +.+.||+||.|||||++||.+|+.+++.- ..-.|.+
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri-----------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRI-----------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcc-----------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 356788999999999999999999875443 34799999999999999999999987642 1111111
Q ss_pred -------------hHH--HHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh
Q 005003 326 -------------FVE--MFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 386 (720)
Q Consensus 326 -------------~~~--~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ 386 (720)
+++ .-...+...+|++.+.+.. ....|.+|||+|.+ ..+..|.||..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcc
Confidence 111 0112355678888887742 33479999999998 35688999999
Q ss_pred hcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHHhCCCCcHHH
Q 005003 387 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGAD 465 (720)
Q Consensus 387 ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~~t~G~Sgad 465 (720)
++ ++...|++|.||..++.+++.+++ |.. ++.+..-+.++....++..+.+..+..+.+ +..+++...| |.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 98 456789999999999999999999 664 567888888888888888887776664443 7778887776 7899
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 466 LANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 466 L~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
..++++.|..... ..|+.+++.+
T Consensus 217 alslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHHH
Confidence 9999999886652 4566655543
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.2e-12 Score=148.92 Aligned_cols=212 Identities=19% Similarity=0.255 Sum_probs=143.0
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE---Ee--
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---IS-- 322 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~---vs-- 322 (720)
.++..+.+|+||+|++.+++.|+..+..- +.+..+||+||||+|||++|+++|+.+++..-. ..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35678889999999999999988877532 235578999999999999999999987642210 01
Q ss_pred -ch---hhHHH----H------hhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHH
Q 005003 323 -GS---EFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 384 (720)
Q Consensus 323 -~s---~~~~~----~------~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL 384 (720)
|+ .+... + ...+...++++.+.+.. ....|++|||+|.+. ...+|.||
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 11 11000 0 01223345555544432 234699999999982 23567788
Q ss_pred hhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcH
Q 005003 385 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSG 463 (720)
Q Consensus 385 ~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~Sg 463 (720)
..++.. ...+++|.+|+..+.+.+.+.+ |+. .+.|..++..+...+++..+....... +..+..++..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888753 3456777777777888888887 665 688999999988888887765544322 2236677777765 77
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 464 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 464 adL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+++.+.++....+ +...|+.+++.+.+
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 7777777765432 34568888876644
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.5e-12 Score=149.52 Aligned_cols=215 Identities=15% Similarity=0.243 Sum_probs=144.7
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE--------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-------- 320 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~-------- 320 (720)
++.++.+|++|+|++.+++.|+..+.. .+.|.++||+||||||||++|+++|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456788999999999999998887652 2456689999999999999999999998763100
Q ss_pred --Eec------hhhHH-------HHhh---hchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 321 --ISG------SEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 321 --vs~------s~~~~-------~~~G---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
-.| ..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. ..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~~ 142 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------TA 142 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------HH
Confidence 111 11110 0111 123456666655532 234699999999982 23
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~ 457 (720)
..|.||..|+.. ...+++|.+|+.++.+-+.+.+ |. ..+++..++.++....+...+...... .+..++.++..
T Consensus 143 a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467788888753 3456666677777888889988 65 378999999998888777766543322 22336777777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r-~~~~~It~~dl~~Al 494 (720)
+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 218 s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 218 AQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred hCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 764 666676766665555421 224578888887765
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=5.1e-12 Score=134.41 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=93.1
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC------------CCccchhhcCCCc
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 417 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~------------p~~LD~ALlrpgR 417 (720)
|.||||||+|.+ +-+.-..+|.-++ +.+ .-++|.|||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlE--se~----aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALE--SEL----APIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhh--ccc----CcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 778888888887 3333344444443 112 2377778885 6667777777 6
Q ss_pred ccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 418 FDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 418 Fdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
+- .|...+.+.++.++|++..+....+..+ ..++.|+....--|-+=--+++.-|...|.++|+..|..+|+++|.+-
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 63 7778888999999999999877655433 236777776666666667788888999999999999999999999765
Q ss_pred H
Q 005003 497 I 497 (720)
Q Consensus 497 v 497 (720)
.
T Consensus 432 F 432 (450)
T COG1224 432 F 432 (450)
T ss_pred H
Confidence 4
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-11 Score=136.24 Aligned_cols=217 Identities=22% Similarity=0.333 Sum_probs=152.8
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----EEEEechhhHHHH
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSISGSEFVEMF 330 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p-----f~~vs~s~~~~~~ 330 (720)
-+.+.+.++..+++..++...-+. ..|.++++|||||||||..++.++.++.-+ +++++|-...+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 344999999999888876543222 235579999999999999999999987443 8999997654422
Q ss_pred h---------------hhchH-HHHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005003 331 V---------------GVGAS-RVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 393 (720)
Q Consensus 331 ~---------------G~~~~-~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~ 393 (720)
. |.... ....+++... ...+-||++||+|.+..+.+ ..+..|+...+.. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--c
Confidence 1 11111 1222333332 34567999999999964421 5777777766544 5
Q ss_pred CcEEEEEEeCCC---CccchhhcCCCccc-ceeeecCCCHHHHHHHHHHhhcCCC----CcccccHHHHH---HhCCCCc
Q 005003 394 TGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIA---MRTPGFS 462 (720)
Q Consensus 394 ~~ViVIaaTN~p---~~LD~ALlrpgRFd-r~I~i~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~LA---~~t~G~S 462 (720)
.++.+|+.+|.. +.+|+.+.+ +|. ..|.|++.+.++...|++....... +++++ ++.+| ....| +
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-D 230 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-D 230 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-c
Confidence 678999999975 478888888 544 3689999999999999998765432 22221 33333 33333 5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 463 GADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 463 gadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
.+-...+|+.|+..|.+++...++.+++.+|.+.+
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 56666899999999999999999999999995543
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.42 E-value=5.6e-12 Score=129.94 Aligned_cols=169 Identities=21% Similarity=0.359 Sum_probs=121.1
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
....++.+++++|++.+|+.+.+-...+-.. .+..++||+|++|||||+++|++.++. |..++.++..+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQG--------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3455789999999999999998876554332 356789999999999999999998865 78888888776
Q ss_pred hHHHHhhhchHHHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc--cCCCcEEEEEEe
Q 005003 326 FVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAAT 402 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~--~~~~~ViVIaaT 402 (720)
+.. +.++++..+. ..+-|||+|++.- ...+. ....|-..|||- ..+.+|++.||+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsF----------e~~d~---~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSF----------EEGDT---EYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCC----------CCCcH---HHHHHHHHhcCccccCCCcEEEEEec
Confidence 543 4555666543 3467999998642 11222 234444555553 235689999999
Q ss_pred CCCCccchhh---------------------cCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc
Q 005003 403 NRADILDSAL---------------------LRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA 447 (720)
Q Consensus 403 N~p~~LD~AL---------------------lrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~ 447 (720)
|+-+.+++.. --..||..++.|..||.++-.+|++.++....+..
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 9744332211 11239999999999999999999999997665543
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=1.6e-12 Score=154.31 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=115.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCcCC-ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-----HHh
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----MFV 331 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~p-rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-----~~~ 331 (720)
.|+|++++++.+.+.+...+..-. ....| .++||+||||||||.+|+++|..++.||+.++|+++.+ .+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999998876432110 01123 36999999999999999999999999999999998854 344
Q ss_pred hhchHHH-----HHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc--c-------CCCcEE
Q 005003 332 GVGASRV-----RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E-------GNTGII 397 (720)
Q Consensus 332 G~~~~~v-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~--~-------~~~~Vi 397 (720)
|.....+ ..+.+..+....|||||||||.+. . .+.+.|+..||.- . .-.+++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~---~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------P---DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----------H---HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 4321111 123334455666999999999982 2 3555566655521 1 113688
Q ss_pred EEEEeCCC-------------------------CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 398 VIAATNRA-------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 398 VIaaTN~p-------------------------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
+|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 124567776 9999999999999998888876654
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=6.3e-12 Score=150.14 Aligned_cols=165 Identities=23% Similarity=0.351 Sum_probs=117.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCc-eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH-----H
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-----F 330 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~pr-gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~-----~ 330 (720)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 4688999999988888765332100 011244 48999999999999999999999999999999998652 2
Q ss_pred hhhch-----HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------CCCcE
Q 005003 331 VGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGI 396 (720)
Q Consensus 331 ~G~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~~~V 396 (720)
.|... .....+.+..+....+||+|||||.+ +. ...+.|+..+|... .-.++
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~---~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HP---DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CH---HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 33221 12233445556677799999999987 22 34555666555321 12357
Q ss_pred EEEEEeCCCC-------------------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 397 IVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 397 iVIaaTN~p~-------------------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
++|+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+.
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 8999998631 24566766 9999999999999999999987765
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.40 E-value=4.1e-12 Score=138.19 Aligned_cols=216 Identities=22% Similarity=0.296 Sum_probs=136.9
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-------CCCEE--------
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 319 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~-------- 319 (720)
.|..|+|++++|..+.-.+- +|. ..+++|.|+||+|||++++++++-. ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 58999999999987643321 221 2379999999999999999999765 33322
Q ss_pred E-Eechh----------------hHHHHhhhchHHHH------------------HHHHHHHhcCCeEEEEccchhcccc
Q 005003 320 S-ISGSE----------------FVEMFVGVGASRVR------------------DLFKKAKENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 320 ~-vs~s~----------------~~~~~~G~~~~~vr------------------~lF~~A~~~~P~ILfIDEID~l~~~ 364 (720)
. .+|.. |.+.-.+.++.++- .++.+| ...+|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~-- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE-- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC--
Confidence 0 01110 01111111111111 112212 23699999999982
Q ss_pred cCCCCCCCChHHHHHHHHHHhhhcCc-----------cCCCcEEEEEEeCCCC-ccchhhcCCCcccceeeecCCCH-HH
Q 005003 365 RGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RG 431 (720)
Q Consensus 365 r~~~~~~~~~e~~~~ln~LL~~ldg~-----------~~~~~ViVIaaTN~p~-~LD~ALlrpgRFdr~I~i~~Pd~-~e 431 (720)
.. ++..|+..|+.- ..+..+++|+++|..+ .++++++. ||..++.++.|+. ++
T Consensus 145 ---------~~---~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 145 ---------DH---LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred ---------HH---HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 22 334444444321 1234689999998655 68999999 9999999999975 88
Q ss_pred HHHHHHHhhcCC-------------------------------CCcccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 432 RTEILKVHGSNK-------------------------------KFDADV--SLDVIAMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 432 R~~IL~~~l~~~-------------------------------~l~~dv--dl~~LA~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
|.+|++...... .+.+++ .+..++..+..-|.+--..+++-|...|.
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 889987743210 000000 02233344443356667789999999999
Q ss_pred HhCCCccCHHHHHHHHHHHHcCc
Q 005003 479 RRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 479 r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
.+|+..|+.+|+..+..-++...
T Consensus 291 l~GR~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 291 FEGRTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999987776543
No 142
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.2e-11 Score=144.27 Aligned_cols=211 Identities=19% Similarity=0.289 Sum_probs=143.5
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE-------
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI------- 321 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v------- 321 (720)
++.++.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|+.+.+.-...
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 456788999999999999988887752 23566799999999999999999999876421100
Q ss_pred --echhhHHH-------Hhh---hchHHHHHHHHHHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 322 --SGSEFVEM-------FVG---VGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 322 --s~s~~~~~-------~~G---~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
+|..+.+. +.+ .+...++++.+.+... ...|++|||+|.+. ....+.|+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naLLK 143 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAFLK 143 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHHHH
Confidence 11111110 011 1234577777666432 23599999999982 235677888
Q ss_pred hhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-ccHHHHHHhCCCCcHH
Q 005003 386 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGA 464 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~LA~~t~G~Sga 464 (720)
.|+.. ....++|.+|+.+..+-+.+++ |.. .+++..++.++....++..+....+..+ ..+..|+..+. .+.+
T Consensus 144 ~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdlr 217 (614)
T PRK14971 144 TLEEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-GGMR 217 (614)
T ss_pred HHhCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 88753 3456777777777889999998 764 7899999999988888877665554432 23677777775 4666
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 465 DLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
++.+.++....++ +.. |+.+++.+.+
T Consensus 218 ~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 218 DALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 6666666655444 333 7776665543
No 143
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=7.7e-13 Score=147.82 Aligned_cols=216 Identities=25% Similarity=0.379 Sum_probs=141.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
...+|+||+|.+++..++.+.+...... +-.|||.|.+||||.++|++|-+.. +-||+.+||..+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~t----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKT----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCC----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 4568999999999999999888766544 3389999999999999999997654 78999999987754
Q ss_pred HH-----hh--------hchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--CccC-
Q 005003 329 MF-----VG--------VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG- 392 (720)
Q Consensus 329 ~~-----~G--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~~- 392 (720)
.. +| .....-..+|+.|.. ..||+|||..+ ....+.-+...|++=+ ...+
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCC
Confidence 32 22 222114456766644 47999999887 3334444444444311 1111
Q ss_pred ---CCcEEEEEEeCCC--CccchhhcCCCcccc--eeeecCCCHHHHHHHHH----Hhhc----CCC-----CcccccHH
Q 005003 393 ---NTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEILK----VHGS----NKK-----FDADVSLD 452 (720)
Q Consensus 393 ---~~~ViVIaaTN~p--~~LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL~----~~l~----~~~-----l~~dvdl~ 452 (720)
.-+|.||||||+. +.+...-+|...|.| ++.+..|+.++|.+-+. .++. +.+ +.++. +.
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a-~~ 454 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA-LA 454 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH-HH
Confidence 2369999999973 223222233333333 88899999999976432 2222 211 22222 44
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH-HHH
Q 005003 453 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID-DSI 494 (720)
Q Consensus 453 ~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~-~Al 494 (720)
.|.+..+--+.++|+|++..+...+ .....|+.+|+. .++
T Consensus 455 ~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 455 LLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred HHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhh
Confidence 5555555568999999999998855 344458888877 444
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=2.1e-12 Score=138.88 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=102.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH--HhhhchHH----------HHHHHHHHHhcCCeEEEEcc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGASR----------VRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~--~~G~~~~~----------vr~lF~~A~~~~P~ILfIDE 357 (720)
.++|||.||||||||++|+.+|.+++.|++.++++...+. ++|...-. ....+..|. ..++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 3479999999999999999999999999999998876654 44432110 112344443 3468999999
Q ss_pred chhcccccCCCCCCCChHHHHHHHHHHhh-----hc----CccCCCcEEEEEEeCCCC------------ccchhhcCCC
Q 005003 358 IDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD----GFEGNTGIIVIAATNRAD------------ILDSALLRPG 416 (720)
Q Consensus 358 ID~l~~~r~~~~~~~~~e~~~~ln~LL~~-----ld----g~~~~~~ViVIaaTN~p~------------~LD~ALlrpg 416 (720)
||.. .......++.+|+. +. .+...+.+.||||+|..+ .+++|++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 33445566667663 11 122445799999999854 46889999
Q ss_pred cccceeeecCCCHHHHHHHHHHhhcC
Q 005003 417 RFDRQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 417 RFdr~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
||-.++.++.|+.++-.+|+......
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99878899999999999999876543
No 145
>PRK09087 hypothetical protein; Validated
Probab=99.36 E-value=2.4e-11 Score=125.44 Aligned_cols=205 Identities=18% Similarity=0.180 Sum_probs=130.9
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
....+..+|++.+..+.-...+ ..+..+..+ ....++|+||+|+|||||+++++...++. +++..++.
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~a~-~~l~~~~~~---------~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~ 79 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRAAV-SLVDHWPNW---------PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG 79 (226)
T ss_pred CCCCCCCChhceeecCchHHHH-HHHHhcccC---------CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc
Confidence 3445667999999644332222 222221111 12249999999999999999999887654 55554444
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
..+. ..... .+|+|||+|.+.. . +..+-.+++. ...+++.+||+++..|..
T Consensus 80 ~~~~-----------~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~---~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 80 SDAA-----------NAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINS---VRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred hHHH-----------Hhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHH---HHhCCCeEEEECCCChHH
Confidence 3322 11111 3788999998621 1 1123333332 223455677777665542
Q ss_pred ---cchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 408 ---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 408 ---LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
..+.|++ ||. ..+++..|+.++|.++++.++....+.- +..++.|+++..+ +.+.+..+++.....+...+
T Consensus 131 ~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~ 207 (226)
T PRK09087 131 WNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK 207 (226)
T ss_pred hccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC
Confidence 3678888 886 4899999999999999999887654432 2236778887774 67777777777766665544
Q ss_pred CCccCHHHHHHHHHHH
Q 005003 482 KAAISSKEIDDSIDRI 497 (720)
Q Consensus 482 ~~~It~~dl~~Al~~v 497 (720)
..||...+.+++..+
T Consensus 208 -~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 -SRITRALAAEVLNEM 222 (226)
T ss_pred -CCCCHHHHHHHHHhh
Confidence 568999998888754
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=8.3e-12 Score=146.68 Aligned_cols=213 Identities=21% Similarity=0.316 Sum_probs=138.1
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc--------------------
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 314 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------------------- 314 (720)
.|.+|+|++.+|..+.-.. .+|. ..||||+|+||||||++|++++.-+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5899999999997664333 2221 1279999999999999999999876
Q ss_pred ---------------CCCEEEEechhhHHHHhhhch--HHH--------HHHHHHHHhcCCeEEEEccchhcccccCCCC
Q 005003 315 ---------------GVPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 369 (720)
Q Consensus 315 ---------------g~pf~~vs~s~~~~~~~G~~~--~~v--------r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 369 (720)
..||+.+.++...+.++|... ..+ ..++..| ...|||||||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC-------
Confidence 357777766544444444210 000 1112111 23599999999982
Q ss_pred CCCChHHHHHHHHHHhhhcCc-----------cCCCcEEEEEEeCCC-CccchhhcCCCcccceeeecCCC-HHHHHHHH
Q 005003 370 GGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA-DILDSALLRPGRFDRQVTVDVPD-IRGRTEIL 436 (720)
Q Consensus 370 ~~~~~e~~~~ln~LL~~ldg~-----------~~~~~ViVIaaTN~p-~~LD~ALlrpgRFdr~I~i~~Pd-~~eR~~IL 436 (720)
. .+++.|+..|+.- ....++++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.+++
T Consensus 140 ----~---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 140 ----D---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ----H---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 2 3445555555421 112458999999964 368889999 999888888774 56677777
Q ss_pred HHhhcC-------------------------------CCCcccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHhCC
Q 005003 437 KVHGSN-------------------------------KKFDADVSLDVIAMRT--PGF-SGADLANLLNEAAILAGRRGK 482 (720)
Q Consensus 437 ~~~l~~-------------------------------~~l~~dvdl~~LA~~t--~G~-SgadL~~lv~eAa~~A~r~~~ 482 (720)
+..... ..+..+ .++.++..+ .|. +.+-...+++-|..+|..+|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 643210 001100 122222221 234 355566788999999999999
Q ss_pred CccCHHHHHHHHHHHHc
Q 005003 483 AAISSKEIDDSIDRIVA 499 (720)
Q Consensus 483 ~~It~~dl~~Al~~v~~ 499 (720)
..|+.+|+..|+.-++.
T Consensus 290 ~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 290 RRVTAEDVREAAELVLP 306 (633)
T ss_pred CcCCHHHHHHHHHHHhh
Confidence 99999999999988763
No 147
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.35 E-value=1.4e-11 Score=114.30 Aligned_cols=123 Identities=40% Similarity=0.629 Sum_probs=82.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhhchHH---HHHHHHHHHhcCCeEEEEccchhccc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASR---VRDLFKKAKENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~~~~~---vr~lF~~A~~~~P~ILfIDEID~l~~ 363 (720)
.++++++||||||||++++.+++.. +.+++++++.+............ ....+.......+++|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3479999999999999999999998 89999999988765433222111 1222333445668999999999872
Q ss_pred ccCCCCCCCChHHHHHHHHHHhhhcCc-cCCCcEEEEEEeCCCC--ccchhhcCCCcccceeeec
Q 005003 364 QRGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVD 425 (720)
Q Consensus 364 ~r~~~~~~~~~e~~~~ln~LL~~ldg~-~~~~~ViVIaaTN~p~--~LD~ALlrpgRFdr~I~i~ 425 (720)
......+.+++...... ....++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11222233333322111 1246788999998876 67778877 898666654
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.1e-11 Score=137.98 Aligned_cols=168 Identities=26% Similarity=0.382 Sum_probs=127.1
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEE
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 319 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~ 319 (720)
....-.++-++|.++.++++.+++..-. ..+-+|.|+||+|||.++..+|.+. +..++
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR~------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRRT------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhccC------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 3456689999999998887777664311 2257899999999999999999854 45678
Q ss_pred EEechhhHH--HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEE
Q 005003 320 SISGSEFVE--MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 397 (720)
Q Consensus 320 ~vs~s~~~~--~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~Vi 397 (720)
.++.+.++. +|.|+.+.+++.+.+..++..+.||||||||.+.+..++..+ ..+ ....+.-.|. ++.+.
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~D-AaNiLKPaLA-------RGeL~ 301 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD-AANLLKPALA-------RGELR 301 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccc-hhhhhHHHHh-------cCCeE
Confidence 888888874 789999999999999999888999999999999654332111 111 2223333332 56789
Q ss_pred EEEEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 398 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 398 VIaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
+|+||+.-+ .=|+||-| ||. .|.+.-|+.++-..||+-.-.
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHH
Confidence 999997533 34899999 997 899999999999999975433
No 149
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=6.5e-12 Score=144.13 Aligned_cols=210 Identities=22% Similarity=0.326 Sum_probs=131.4
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh-----------cCCCEEEEe
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSIS 322 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e-----------~g~pf~~vs 322 (720)
.+|++++|.+.+.+++.+.+..+.... .+|||+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~----------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS----------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC----------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 579999999999999999887655432 37999999999999999999776 467999999
Q ss_pred chhhHHH-----Hhhhc------h--HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc-
Q 005003 323 GSEFVEM-----FVGVG------A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD- 388 (720)
Q Consensus 323 ~s~~~~~-----~~G~~------~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld- 388 (720)
|+.+.+. ..|.. + ..-..+|+.|. ...||||||+.+ ....+..+..+|++-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 9876432 22211 1 01123565553 358999999998 2333444444443211
Q ss_pred -Ccc----CCCcEEEEEEeCCCCccchhhcCCCccc-----c--eeeecCCCHHHHHHHH----HHhhcC----C--CCc
Q 005003 389 -GFE----GNTGIIVIAATNRADILDSALLRPGRFD-----R--QVTVDVPDIRGRTEIL----KVHGSN----K--KFD 446 (720)
Q Consensus 389 -g~~----~~~~ViVIaaTN~p~~LD~ALlrpgRFd-----r--~I~i~~Pd~~eR~~IL----~~~l~~----~--~l~ 446 (720)
... ...++.+|++||.. +. .+...|+|. + .+.+.+|++.+|.+-+ +.++.+ . .+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 001 12357899999863 11 222223332 1 6788999999997633 333322 1 122
Q ss_pred cccc------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 005003 447 ADVS------LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 490 (720)
Q Consensus 447 ~dvd------l~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl 490 (720)
.+.- +..|....+-.+.++|+|++++++..+.......|+.+++
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 2110 1345555566689999999999988653222245565554
No 150
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.31 E-value=4.3e-12 Score=141.81 Aligned_cols=213 Identities=24% Similarity=0.329 Sum_probs=137.7
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 329 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~ 329 (720)
...+.+++|.+.+.+++.+.+..+...+. .|||+|++||||.++||+|-... +.||+.+||..+-+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35789999999999999999998876654 79999999999999999996654 669999999876543
Q ss_pred -----Hhhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh--hcCccC---
Q 005003 330 -----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFEG--- 392 (720)
Q Consensus 330 -----~~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~--ldg~~~--- 392 (720)
+.|... .+-...|+.|.. .+||||||..+ .-+.+.-+...|++ +....+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 233111 122345666644 48999999888 22333333333332 111111
Q ss_pred -CCcEEEEEEeCCC--CccchhhcCCCcccc--eeeecCCCHHHHHHHH----HHhh----cCCCC-ccccc---HHHHH
Q 005003 393 -NTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHG----SNKKF-DADVS---LDVIA 455 (720)
Q Consensus 393 -~~~ViVIaaTN~p--~~LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL----~~~l----~~~~l-~~dvd---l~~LA 455 (720)
+-+|.||+|||+. +.+...-+|...|.| ++.+..|...+|.+-+ ++++ ..... ...++ +..+.
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 2368999999972 222222233332333 8899999999997733 2332 22211 12222 45555
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 456 MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 456 ~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
...+--+.++|+|+++.++..+ ....|+.+++..
T Consensus 353 ~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~~ 386 (464)
T COG2204 353 AYDWPGNVRELENVVERAVILS---EGPEIEVEDLPL 386 (464)
T ss_pred hCCCChHHHHHHHHHHHHHhcC---Cccccchhhccc
Confidence 5555568889999999988777 445666666543
No 151
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.31 E-value=1.5e-11 Score=142.13 Aligned_cols=211 Identities=24% Similarity=0.325 Sum_probs=133.2
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 327 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~ 327 (720)
.+..+|++++|.+...+++.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34568999999999999999888776543 2379999999999999999998764 6799999998764
Q ss_pred HHH-----hhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC---
Q 005003 328 EMF-----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--- 392 (720)
Q Consensus 328 ~~~-----~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~--- 392 (720)
+.. .|... ......|+.+ ...+|||||||.+ ....+..+..++..-. +..
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~-~~~~~~ 324 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGE-FERVGG 324 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCc-EEECCC
Confidence 322 12110 0001123333 3468999999998 2333444444443211 111
Q ss_pred ----CCcEEEEEEeCCCC-------ccchhhcCCCcccceeeecCCCHHHHHH----HHHHhhcC----CCCcccc---c
Q 005003 393 ----NTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN----KKFDADV---S 450 (720)
Q Consensus 393 ----~~~ViVIaaTN~p~-------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~----IL~~~l~~----~~l~~dv---d 450 (720)
..++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +++.++.. ......+ .
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 12588999987631 12222222 332 56778888888754 33333322 1111112 2
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 451 LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 451 l~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
+..|....+.-+.++|+++++.|+..+ ....|+.+|+..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 566777766678999999999998765 345788888753
No 152
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.29 E-value=2.4e-11 Score=139.48 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=134.9
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 329 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~ 329 (720)
..+|++++|.+++.+++.+.+..+.... .+|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~----------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSD----------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCC----------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3679999999999999999887654432 37999999999999999999765 4679999999876432
Q ss_pred -----Hhhhc------h--HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Ccc---
Q 005003 330 -----FVGVG------A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE--- 391 (720)
Q Consensus 330 -----~~G~~------~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~--- 391 (720)
+.|.. + ..-..+|+.|. ...||||||+.+ +...+..+..+|.+-. ...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 22211 0 01234555553 358999999998 3334444444444311 011
Q ss_pred -CCCcEEEEEEeCCCC--ccchhhcCCCcccc--eeeecCCCHHHHHHHH----HHhhcCC------CCcccccHHH---
Q 005003 392 -GNTGIIVIAATNRAD--ILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHGSNK------KFDADVSLDV--- 453 (720)
Q Consensus 392 -~~~~ViVIaaTN~p~--~LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL----~~~l~~~------~l~~dvdl~~--- 453 (720)
...++.+|++||..- .+....+|+..|.+ .+.+..|++.+|.+-+ ..++... .+.++ .+..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~~~~~~ 422 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AAQVLAG 422 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HHHHhHH
Confidence 122468999998632 22222222212222 5788899999987633 3333221 12211 1222
Q ss_pred ----HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 454 ----IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 454 ----LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
|....+-.+.++|++++++++..+.......|+.+++..
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 556666678999999999998876432345788887654
No 153
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-11 Score=136.05 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=131.8
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 329 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~ 329 (720)
...+.+|+|.+.+..++.+.|+.....+. .|||.|.+||||..+||+|-.. .+.||+++||+.+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 56789999999999999999998776654 7999999999999999999664 4789999999887654
Q ss_pred Hhhh-chHHHHHHHHHHHhc--------CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh--hcCccCC----C
Q 005003 330 FVGV-GASRVRDLFKKAKEN--------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFEGN----T 394 (720)
Q Consensus 330 ~~G~-~~~~vr~lF~~A~~~--------~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~--ldg~~~~----~ 394 (720)
.... --...+..|.-|... ....||+|||..+ .-..+..+...|++ ++....+ -
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 3211 011122333333221 1358999999887 23344444444433 2222222 2
Q ss_pred cEEEEEEeCCCCccchhhcCCCcc-----cc--eeeecCCCHHHHHHHH----HHhh----cCCCC-----cccccHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRF-----DR--QVTVDVPDIRGRTEIL----KVHG----SNKKF-----DADVSLDVI 454 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRF-----dr--~I~i~~Pd~~eR~~IL----~~~l----~~~~l-----~~dvdl~~L 454 (720)
+|.||||||+- |..+. +.|+| .| ++.+..|+..+|..-+ ++++ .+... +.+ .++.+
T Consensus 358 DVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~-Al~~L 433 (550)
T COG3604 358 DVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE-ALELL 433 (550)
T ss_pred EEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-HHHHH
Confidence 59999999972 22222 22333 23 7788899999996522 2222 22222 222 25666
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 005003 455 AMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 455 A~~t~G~SgadL~~lv~eAa~~A 477 (720)
.+...--+.++|+|+++.|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 66666668999999999999988
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=7.3e-11 Score=142.58 Aligned_cols=195 Identities=23% Similarity=0.312 Sum_probs=126.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCce-EEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH---
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prg-VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~--- 329 (720)
+.|+|++++.+.+.+.+...+..-.+ ...|.| +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 47899999999888887653221100 123555 7999999999999999999988 458899999998653
Q ss_pred ---------HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------
Q 005003 330 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------- 391 (720)
Q Consensus 330 ---------~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------- 391 (720)
|+|.... ..+.+..+++.++||+|||||.. +.. +.+.|+..+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~---v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPD---VLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHH---HHHHHHHHhhcceeecCCCcEE
Confidence 2332221 12344556677899999999976 233 4455555554321
Q ss_pred CCCcEEEEEEeCCCC-----------------------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC
Q 005003 392 GNTGIIVIAATNRAD-----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 392 ~~~~ViVIaaTN~p~-----------------------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
.-.+.++|.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 114589999998411 14466777 887 8899999999999998776543
Q ss_pred C--------CCccccc---HHHHHHhCCC--CcHHHHHHHHHHHH
Q 005003 443 K--------KFDADVS---LDVIAMRTPG--FSGADLANLLNEAA 474 (720)
Q Consensus 443 ~--------~l~~dvd---l~~LA~~t~G--~SgadL~~lv~eAa 474 (720)
. .+.-.++ .+.|+....+ +-.+.|.++++.-.
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 2222222 3445554432 34566666665533
No 155
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=9e-11 Score=127.60 Aligned_cols=132 Identities=36% Similarity=0.447 Sum_probs=88.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHH------HHHHHh--cCC--eEEEEccchhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDL------FKKAKE--NAP--CIVFVDEIDAV 361 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~l------F~~A~~--~~P--~ILfIDEID~l 361 (720)
++||.||||||||++|+.+|..++.+|+.++|......-...+....... |..... ... +|+++|||+..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra 124 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA 124 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC
Confidence 69999999999999999999999999999999865532111111111111 000000 001 49999999886
Q ss_pred ccccCCCCCCCChHHHHHHHHHHhhhcC----------ccCCCcEEEEEEeC-----CCCccchhhcCCCcccceeeecC
Q 005003 362 GRQRGTGIGGGNDEREQTLNQLLTEMDG----------FEGNTGIIVIAATN-----RADILDSALLRPGRFDRQVTVDV 426 (720)
Q Consensus 362 ~~~r~~~~~~~~~e~~~~ln~LL~~ldg----------~~~~~~ViVIaaTN-----~p~~LD~ALlrpgRFdr~I~i~~ 426 (720)
... +.+.||..|+. +.-+..++||+|+| ....+++|+++ ||...+.++.
T Consensus 125 -----------~p~---~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~y 188 (329)
T COG0714 125 -----------PPE---VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDY 188 (329)
T ss_pred -----------CHH---HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCC
Confidence 233 45555555544 33456789999999 44578999999 9988999999
Q ss_pred CCHHH-HHHHHHHh
Q 005003 427 PDIRG-RTEILKVH 439 (720)
Q Consensus 427 Pd~~e-R~~IL~~~ 439 (720)
|+.++ ...+....
T Consensus 189 p~~~~e~~~i~~~~ 202 (329)
T COG0714 189 PDSEEEERIILARV 202 (329)
T ss_pred CCchHHHHHHHHhC
Confidence 95554 44444433
No 156
>PHA02244 ATPase-like protein
Probab=99.28 E-value=1.1e-10 Score=127.05 Aligned_cols=148 Identities=23% Similarity=0.359 Sum_probs=94.7
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH--h
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF--V 331 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~--~ 331 (720)
+++.-+.+..........+..++... .+|||+||||||||++|+++|..++.||+.+++. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~-----------~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN-----------IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 34444444444545555555555443 3799999999999999999999999999999853 2211 1
Q ss_pred hh--chHHHH-HHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh-----hcC-ccCCCcEEEEEEe
Q 005003 332 GV--GASRVR-DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDG-FEGNTGIIVIAAT 402 (720)
Q Consensus 332 G~--~~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~-----ldg-~~~~~~ViVIaaT 402 (720)
|. ...... .-|-.|. ...++|+|||++.+ .......++.++.. .++ .....++.+|+|+
T Consensus 161 G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a-----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 161 GFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS-----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAG 228 (383)
T ss_pred ccccccccccchHHHHHh-hcCCEEEEeCcCcC-----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEee
Confidence 10 000111 1222332 23579999999987 23344455555532 111 1234679999999
Q ss_pred CCC-----------CccchhhcCCCcccceeeecCCCH
Q 005003 403 NRA-----------DILDSALLRPGRFDRQVTVDVPDI 429 (720)
Q Consensus 403 N~p-----------~~LD~ALlrpgRFdr~I~i~~Pd~ 429 (720)
|.+ ..+++++++ ||- .|+++.|+.
T Consensus 229 N~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 229 NTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred CCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 973 578999999 995 799999983
No 157
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.26 E-value=9.8e-11 Score=133.58 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=133.8
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc------------------
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 314 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~------------------ 314 (720)
..+|+||.|++.+++.+.-.+. ...+++|.||||||||++|+++++-+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3589999999999776554331 12379999999999999999998622
Q ss_pred ----------CCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHH
Q 005003 315 ----------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 384 (720)
Q Consensus 315 ----------g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL 384 (720)
..||...+++......+|.+...-...+..|. ..+|||||++.+ ....+..+.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 23555544443333334433222223444442 369999999998 233344444444
Q ss_pred hhhc----C----ccCCCcEEEEEEeCCC------C-----------------ccchhhcCCCcccceeeecCCCHHH--
Q 005003 385 TEMD----G----FEGNTGIIVIAATNRA------D-----------------ILDSALLRPGRFDRQVTVDVPDIRG-- 431 (720)
Q Consensus 385 ~~ld----g----~~~~~~ViVIaaTN~p------~-----------------~LD~ALlrpgRFdr~I~i~~Pd~~e-- 431 (720)
+.-. . .....++.+|+++|.- + .+...|++ |||.++.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 3210 0 0113468999999952 1 47888888 999999998764432
Q ss_pred -----------HHHHHHH------hhcCC---CCccccc-------------HHH---HHHhCCCCcHHHHHHHHHHHHH
Q 005003 432 -----------RTEILKV------HGSNK---KFDADVS-------------LDV---IAMRTPGFSGADLANLLNEAAI 475 (720)
Q Consensus 432 -----------R~~IL~~------~l~~~---~l~~dvd-------------l~~---LA~~t~G~SgadL~~lv~eAa~ 475 (720)
|.++.+. ..... .++..+. ... -+....++|.+....+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2223221 11111 1111111 111 1222346899999999999999
Q ss_pred HHHHhCCCccCHHHHHHHHH
Q 005003 476 LAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 476 ~A~r~~~~~It~~dl~~Al~ 495 (720)
+|.-++.+.|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999974
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.26 E-value=1.2e-10 Score=141.39 Aligned_cols=202 Identities=22% Similarity=0.292 Sum_probs=129.9
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH----
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~---- 329 (720)
..|+|++++.+.+.+.+...+..-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5799999999999998876432100 001233468999999999999999999976 568999999987542
Q ss_pred -HhhhchH-----HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------CCC
Q 005003 330 -FVGVGAS-----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNT 394 (720)
Q Consensus 330 -~~G~~~~-----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~~ 394 (720)
+.|.... ....+....+....+||+||||+.+ +.. +.+.|+..++.-. .-.
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~---v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPD---VFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHH---HHHHHHHHHhcCceecCCCeEEecC
Confidence 2221111 1123444445566689999999987 333 4455555543211 113
Q ss_pred cEEEEEEeCCCC-------------------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC-------
Q 005003 395 GIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------- 442 (720)
Q Consensus 395 ~ViVIaaTN~p~-------------------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~------- 442 (720)
+.+||+|||... .+.|.|+. |+|.++.+.+++.+...+|+...+..
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999721 12355665 99999999999999999988766532
Q ss_pred CCCccccc---HHHHHHhCC--CCcHHHHHHHHHHHHHHH
Q 005003 443 KKFDADVS---LDVIAMRTP--GFSGADLANLLNEAAILA 477 (720)
Q Consensus 443 ~~l~~dvd---l~~LA~~t~--G~SgadL~~lv~eAa~~A 477 (720)
..+...++ .+.|+.... .+..++|+++++......
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 11111222 445555422 466777877777665443
No 159
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.25 E-value=5.7e-11 Score=129.26 Aligned_cols=191 Identities=20% Similarity=0.259 Sum_probs=120.6
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH-----
Q 005003 259 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----- 330 (720)
Q Consensus 259 I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~----- 330 (720)
++|.+.+.+++.+.+..+... ..+|||+|++||||+++|++|.... +.||+.++|+.+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 578888888888888776543 2379999999999999999996644 5799999998654321
Q ss_pred hhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Cc----cCCCcEE
Q 005003 331 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGNTGII 397 (720)
Q Consensus 331 ~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~----~~~~~Vi 397 (720)
.|... .....+|+.| ...+|||||||.+ ....+..+..+|..-. .. ....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 12110 0112234444 3469999999998 3334444444443211 00 1124689
Q ss_pred EEEEeCCC-------CccchhhcCCCcccceeeecCCCHHHHHHHH----HHhhc----CC------CCcccccHHHHHH
Q 005003 398 VIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHGS----NK------KFDADVSLDVIAM 456 (720)
Q Consensus 398 VIaaTN~p-------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL----~~~l~----~~------~l~~dvdl~~LA~ 456 (720)
+|++||.. ..+.+.|.. |+. .+.+..|+..+|.+-+ +.++. +. .+.+ ..+..|..
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~-~a~~~L~~ 212 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTP-QAREQLLE 212 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCH-HHHHHHHh
Confidence 99999863 123344444 554 5678889999987633 22221 11 1221 22566666
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 005003 457 RTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 457 ~t~G~SgadL~~lv~eAa~~A 477 (720)
..+--+.++|+++++.|+..+
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC
Confidence 666678899999999988765
No 160
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.25 E-value=6.8e-11 Score=128.53 Aligned_cols=195 Identities=21% Similarity=0.264 Sum_probs=124.7
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH--
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 329 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~-- 329 (720)
-+++++|.+...+++.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3788999999999999888776543 2379999999999999999996644 579999999876432
Q ss_pred ---Hhhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-------
Q 005003 330 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------- 392 (720)
Q Consensus 330 ---~~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~------- 392 (720)
+.|... ......|+.+ ...+|||||||.+ ....+..+..++..-. +..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMLVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----------CHHHHHHHHHHHhcCc-EEeCCCCcee
Confidence 222110 0112234443 2468999999998 2333444444443211 111
Q ss_pred CCcEEEEEEeCCC-------CccchhhcCCCcccceeeecCCCHHHHHHH----HHHhh----cCCCCc--cccc---HH
Q 005003 393 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHG----SNKKFD--ADVS---LD 452 (720)
Q Consensus 393 ~~~ViVIaaTN~p-------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~I----L~~~l----~~~~l~--~dvd---l~ 452 (720)
+.++.+|++|+.. ..+.+.|.. ||. .+.+..|+..+|.+- ++.++ .+.... ..++ +.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 1258899998763 234455555 554 567888999998663 23332 221111 1122 55
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 453 VIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 453 ~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
.|....+--+.++|+++++.|...+
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 6666666678899999999988654
No 161
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.25 E-value=6e-11 Score=136.32 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=127.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH--
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 329 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~-- 329 (720)
++++++|.+...+++.+.+..+... +.+|||+|++||||+++|++|.... +.||+.++|+.+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999999999988876543 3389999999999999999997764 679999999877432
Q ss_pred ---Hhhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Cc----cCC
Q 005003 330 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGN 393 (720)
Q Consensus 330 ---~~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~----~~~ 393 (720)
+.|... ......|+.| ...+|||||||.+. .+.+..+..++..-. .. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 122110 0111235444 24589999999992 333444444443211 00 012
Q ss_pred CcEEEEEEeCCCC-------ccchhhcCCCcccceeeecCCCHHHHHHHH----HHhhcC----C-----CCcccccHHH
Q 005003 394 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHGSN----K-----KFDADVSLDV 453 (720)
Q Consensus 394 ~~ViVIaaTN~p~-------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL----~~~l~~----~-----~l~~dvdl~~ 453 (720)
.++.+|++||..- .+.+.|.. |+. .+.|..|+..+|.+-+ ++++.+ . .+.+ ..+..
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~-~a~~~ 396 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSP-AAQAA 396 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCH-HHHHH
Confidence 3689999998631 12233333 332 5778899999997633 222221 1 1111 12566
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 454 IAMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 454 LA~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
|....+-.+.++|+++++.|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 6677766799999999999998874
No 162
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.24 E-value=5.5e-11 Score=140.22 Aligned_cols=211 Identities=21% Similarity=0.301 Sum_probs=133.2
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE- 328 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~- 328 (720)
..+|++++|.+.+.+++.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999999888877765443 2369999999999999999998754 57999999987642
Q ss_pred ----HHhhhc--h--HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--CccC----CC
Q 005003 329 ----MFVGVG--A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 394 (720)
Q Consensus 329 ----~~~G~~--~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~~----~~ 394 (720)
.+.|.. . ......|+.| ...+||||||+.+ ....+..+..+|+.-. .... +.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 223311 0 0011123333 3468999999998 2334444444443210 0011 12
Q ss_pred cEEEEEEeCCCCccchhhcCCCccc-----c--eeeecCCCHHHHHHH----HHHhhcC--------CCCcccccHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFD-----R--QVTVDVPDIRGRTEI----LKVHGSN--------KKFDADVSLDVIA 455 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFd-----r--~I~i~~Pd~~eR~~I----L~~~l~~--------~~l~~dvdl~~LA 455 (720)
++.+|+|||..- ..+...|+|. + .+.+.+|+..+|.+- ++.++.. ..+.+ ..+..|.
T Consensus 457 ~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~-~a~~~L~ 532 (638)
T PRK11388 457 DVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDD-DALARLV 532 (638)
T ss_pred eEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCH-HHHHHHH
Confidence 578999998631 1222223332 1 678889999999642 2232221 11222 2256666
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 456 MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 456 ~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
...+.-+.++|+++++.|...+ ....|+.+|+...+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 7776678999999999988654 34578888876554
No 163
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=6.6e-11 Score=136.26 Aligned_cols=208 Identities=21% Similarity=0.287 Sum_probs=131.5
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
...+|++++|.+...+++.+.+..+... ..+|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4568999999999988888777655432 2369999999999999999986543 57999999987643
Q ss_pred H-----Hhhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh--cCc----
Q 005003 329 M-----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGF---- 390 (720)
Q Consensus 329 ~-----~~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l--dg~---- 390 (720)
. +.|... .....+|+.|. ..+|||||||.+ ....+..+..++..- ...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 2 222111 11123455543 358999999998 233444444444421 001
Q ss_pred cCCCcEEEEEEeCCCC-------ccchhhcCCCcccceeeecCCCHHHHHHHH--------HHhhcCC-----CCccccc
Q 005003 391 EGNTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEIL--------KVHGSNK-----KFDADVS 450 (720)
Q Consensus 391 ~~~~~ViVIaaTN~p~-------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL--------~~~l~~~-----~l~~dvd 450 (720)
....++.||+||+.+- .+.+.|.. |+. .+.+..|+..+|.+-+ +.+..+. .+.++ .
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~-a 410 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD-L 410 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH-H
Confidence 1123578999987631 12333444 444 5788899999987532 2222222 12222 2
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 005003 451 LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 490 (720)
Q Consensus 451 l~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl 490 (720)
+..|....+.-+.++|++++..|...+ ....|+.+|+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 455666655668899999999888765 3456777775
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=2.1e-10 Score=138.86 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=111.5
Q ss_pred ccccccchHHHHHHHHHHHHhc----CchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLK----KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~----~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
++.|+|++++.+.+.+.+...+ +|. ++...+||+||||||||++|+++|..+ +.+++.++|+++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 4579999999999999887643 222 111358999999999999999999876 56899999998865
Q ss_pred H-----Hhhhch-----HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc--c-----
Q 005003 329 M-----FVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E----- 391 (720)
Q Consensus 329 ~-----~~G~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~--~----- 391 (720)
. +.|... ..-..+.+..+....++|+|||++.+ +.. +.+.|+..++.- .
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~---v~~~Ll~ile~g~l~d~~gr 705 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPD---VFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHH---HHHHHHHHHhhCceecCCce
Confidence 3 222111 11111223334444589999999987 333 344455544321 1
Q ss_pred --CCCcEEEEEEeCCCC-------------------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC
Q 005003 392 --GNTGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 392 --~~~~ViVIaaTN~p~-------------------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
.-.+.++|+|||... .+.|+++. |+|..+.+.+++.+....|++.++..
T Consensus 706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 112467899999621 24467777 99999999999999998888776643
No 165
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.23 E-value=4.3e-11 Score=131.72 Aligned_cols=201 Identities=26% Similarity=0.358 Sum_probs=128.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHH---h-cCCCEEEEechhhH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---E-AGVPFFSISGSEFV 327 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~---e-~g~pf~~vs~s~~~ 327 (720)
....+++++|.+...+++++.+..+... ..+||++|++||||+++|++|.. . .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~----------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPS----------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCC----------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3457999999999999988888763322 23799999999999999999954 3 46799999999886
Q ss_pred HHHh-----hh-------chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh-----cCc
Q 005003 328 EMFV-----GV-------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----DGF 390 (720)
Q Consensus 328 ~~~~-----G~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l-----dg~ 390 (720)
+... |. ....-..+|+.|.. .+||+|||+.+ ..+.+..+-.+|+.- .+-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 5322 11 12233456666644 48999999998 334444555555431 111
Q ss_pred -cCCCcEEEEEEeCCCCccchhhcC-CCcccc--eeeecCCCHHHHHHHH--------HHhhcCCCCccccc----HHHH
Q 005003 391 -EGNTGIIVIAATNRADILDSALLR-PGRFDR--QVTVDVPDIRGRTEIL--------KVHGSNKKFDADVS----LDVI 454 (720)
Q Consensus 391 -~~~~~ViVIaaTN~p~~LD~ALlr-pgRFdr--~I~i~~Pd~~eR~~IL--------~~~l~~~~l~~dvd----l~~L 454 (720)
....+|.+|+|||. .++.+++. ..-+.| .+.|.+|+.++|+.-+ +.++++.......+ ...+
T Consensus 209 ~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 209 QPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 12346999999984 23333332 112221 5677889999986522 23333333332221 3344
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 455 AMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 455 A~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
-....--+.++|+|+|..++..+.
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhc
Confidence 444444588999999999998874
No 166
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.22 E-value=1.5e-10 Score=133.08 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=131.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE----echhhHHHHhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----SGSEFVEMFVG 332 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v----s~s~~~~~~~G 332 (720)
-+|.|.+.+|..+.-.+---..+..-.....+-..+|||+|+||||||++|+++++......+.. ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 35788888877654333211111100011122234799999999999999999999765432221 22222110000
Q ss_pred h---chHHH-HHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCcEE
Q 005003 333 V---GASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGII 397 (720)
Q Consensus 333 ~---~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~~~Vi 397 (720)
. +...+ ...+..| ...+++|||+|.+- +..+.. |++.|+.-. -+..+.
T Consensus 283 ~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----------~~~q~~---L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 283 DPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----------DSDRTA---IHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred ccCcceEEecCccEEec---CCCEEEEechhhCC-----------HHHHHH---HHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 0 00000 0011112 24699999999982 223333 444443211 134689
Q ss_pred EEEEeCCCC-------------ccchhhcCCCccccee-eecCCCHHHHHHHHHHhhcCCC-------------------
Q 005003 398 VIAATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEILKVHGSNKK------------------- 444 (720)
Q Consensus 398 VIaaTN~p~-------------~LD~ALlrpgRFdr~I-~i~~Pd~~eR~~IL~~~l~~~~------------------- 444 (720)
||||+|..+ .|++++++ |||..+ ..+.|+.+...+|.++.+....
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999742 58999999 999854 4578999988888876332100
Q ss_pred ----------Cccccc---HHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 445 ----------FDADVS---LDVIA-----MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 445 ----------l~~dvd---l~~LA-----~~----------t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
+.+.++ .+.+. .+ ..+.|++.++.+++-|...|+-+++..|+.+|+.+|+.-
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 000111 11111 01 235689999999999999999999999999999999865
Q ss_pred H
Q 005003 497 I 497 (720)
Q Consensus 497 v 497 (720)
+
T Consensus 504 ~ 504 (509)
T smart00350 504 L 504 (509)
T ss_pred H
Confidence 4
No 167
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.4e-10 Score=125.27 Aligned_cols=190 Identities=18% Similarity=0.211 Sum_probs=125.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-------CEEEE--
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI-- 321 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-------pf~~v-- 321 (720)
..+..+++|+|++++++.+...+..- +.|..+||+||+|+|||++|+++|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 34678999999999999999888633 34568999999999999999999998755 21111
Q ss_pred --echhhHHH-------H--h-------------hhchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCC
Q 005003 322 --SGSEFVEM-------F--V-------------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGN 373 (720)
Q Consensus 322 --s~s~~~~~-------~--~-------------G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~ 373 (720)
.|..+... + + ..+...+|++-+... .....|++|||+|.+-
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 11111100 0 0 011234454443332 2345799999999982
Q ss_pred hHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHH
Q 005003 374 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDV 453 (720)
Q Consensus 374 ~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~ 453 (720)
....|.||..++.. ..+.++|..|+.++.+.|.+++ |+ +.+.+++|+.++-.++++.......++ +..+..
T Consensus 155 ---~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~ 225 (351)
T PRK09112 155 ---RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEA 225 (351)
T ss_pred ---HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHH
Confidence 33567788888753 3455666667888988899988 77 589999999999999998753322221 222455
Q ss_pred HHHhCCCCcHHHHHHHHHH
Q 005003 454 IAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 454 LA~~t~G~SgadL~~lv~e 472 (720)
++..+.| +++...++++.
T Consensus 226 i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 226 LLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHcCC-CHHHHHHHHhc
Confidence 6666654 55555555443
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.20 E-value=4.2e-10 Score=126.50 Aligned_cols=214 Identities=18% Similarity=0.166 Sum_probs=127.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechh-hHHHHhhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE-FVEMFVGV 333 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~-~~~~~~G~ 333 (720)
..++|.+++.+.+...+. . ..++||+||||||||++|++++...+. ||....+.- ..+...|.
T Consensus 20 ~~i~gre~vI~lll~aal--a------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--S------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--c------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 356777777765544431 1 227999999999999999999987643 566554431 12222332
Q ss_pred c-hHHH--HHHHHHHHhc---CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--C------CCcEEEE
Q 005003 334 G-ASRV--RDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--G------NTGIIVI 399 (720)
Q Consensus 334 ~-~~~v--r~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--~------~~~ViVI 399 (720)
. .... ..-|...... ...+||+|||..+. ..+.+.||..|+.-. . -+..+++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 1 0110 1223222111 23499999998662 345666777663211 1 0113455
Q ss_pred EEeCCCC---ccchhhcCCCcccceeeecCCC-HHHHHHHHHHhhcC--CCC--ccccc---------------------
Q 005003 400 AATNRAD---ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSN--KKF--DADVS--------------------- 450 (720)
Q Consensus 400 aaTN~p~---~LD~ALlrpgRFdr~I~i~~Pd-~~eR~~IL~~~l~~--~~l--~~dvd--------------------- 450 (720)
+|||... ...+++.. ||-..+.+++|+ .++..+++...... ... ..-++
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5567422 23358888 997788999997 45557788654221 111 00010
Q ss_pred --HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCc
Q 005003 451 --LDVIAMR---T---PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 451 --l~~LA~~---t---~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
+..+... + ...|++--..+++-|...|.-.|+..|+++|+. .+..+++..
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 1223321 2 237888888999999999999999999999999 666665543
No 169
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.19 E-value=8.1e-10 Score=117.28 Aligned_cols=218 Identities=22% Similarity=0.335 Sum_probs=137.9
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEech--
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS-- 324 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s-- 324 (720)
=+.-+|++.+++.+..+-+.+..|.. .++| ++||+|++|.|||++++.++... .+|++++.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 34568899999999888888888864 2333 69999999999999999998643 3688888652
Q ss_pred ----hhHHHH---hh------h-chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc
Q 005003 325 ----EFVEMF---VG------V-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 390 (720)
Q Consensus 325 ----~~~~~~---~G------~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~ 390 (720)
.|.... .| . ..+.-.......+...+-+|+|||++.+.. +.......++|.| +.+- -
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~qr~~Ln~L-K~L~-N 177 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRKQREFLNAL-KFLG-N 177 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHHHHHHHHHH-HHHh-h
Confidence 222211 11 1 112223334555677888999999999742 1223334444433 3331 1
Q ss_pred cCCCcEEEEEEeCCCC--ccchhhcCCCcccceeeecCCCH-HHHHHHHHHhhcCCCCcc--ccc----HHHHHHhCCCC
Q 005003 391 EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSNKKFDA--DVS----LDVIAMRTPGF 461 (720)
Q Consensus 391 ~~~~~ViVIaaTN~p~--~LD~ALlrpgRFdr~I~i~~Pd~-~eR~~IL~~~l~~~~l~~--dvd----l~~LA~~t~G~ 461 (720)
.-.-.++.+|+-.-.. .-|+.+-+ ||+ .+.++.... ++-..++..+-...++.. ++. ...+-..+.|.
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~ 254 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL 254 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc
Confidence 1122345455432222 34778887 998 445554432 344556666554444332 222 24555677776
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 462 SGADLANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 462 SgadL~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
.| ++.++++.|+..|++.|++.||.+.++.
T Consensus 255 iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 255 IG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred hH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 54 7999999999999999999999998875
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.19 E-value=5.7e-10 Score=135.00 Aligned_cols=166 Identities=22% Similarity=0.309 Sum_probs=114.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCc-eEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH----
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE---- 328 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~pr-gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~---- 328 (720)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..+ +.+++.+++++|.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 6789999999999888765322100 011233 47999999999999999999987 46899999988753
Q ss_pred -HHhhhch-----HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------CC
Q 005003 329 -MFVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 393 (720)
Q Consensus 329 -~~~G~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~ 393 (720)
.+.|..+ .....+.+..+....+||+|||+|.+ +. .+.+.|+..+|.-. .-
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~---~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HP---DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CH---HHHHHHHHHhccCceecCCCcEEec
Confidence 2222211 11234555666666699999999987 22 34555666555311 12
Q ss_pred CcEEEEEEeCCCCc-------------------------------------cchhhcCCCcccceeeecCCCHHHHHHHH
Q 005003 394 TGIIVIAATNRADI-------------------------------------LDSALLRPGRFDRQVTVDVPDIRGRTEIL 436 (720)
Q Consensus 394 ~~ViVIaaTN~p~~-------------------------------------LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL 436 (720)
.+.++|.|||.... +.|.++. |+|.+|.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 46899999985311 2245666 99999999999999999998
Q ss_pred HHhhcC
Q 005003 437 KVHGSN 442 (720)
Q Consensus 437 ~~~l~~ 442 (720)
+..+.+
T Consensus 729 ~~~l~~ 734 (821)
T CHL00095 729 EIMLKN 734 (821)
T ss_pred HHHHHH
Confidence 776643
No 171
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.18 E-value=4.6e-10 Score=131.22 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=66.7
Q ss_pred cEEEEEEeCCC--CccchhhcCCCccc---ceeeec--CCC-HHHHHHHHHHh---hcCCCCccccc---HHHHH---Hh
Q 005003 395 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VPD-IRGRTEILKVH---GSNKKFDADVS---LDVIA---MR 457 (720)
Q Consensus 395 ~ViVIaaTN~p--~~LD~ALlrpgRFd---r~I~i~--~Pd-~~eR~~IL~~~---l~~~~l~~dvd---l~~LA---~~ 457 (720)
++.+|+++|.. ..+||.+++ ||+ ..+.++ .|+ .+.|.++.+.. +++....+.++ +..+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999974 578999999 998 555553 354 44454444332 22221111222 22222 11
Q ss_pred ------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 458 ------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 458 ------t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
.-..+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11246799999999999899888889999999999987543
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-10 Score=136.63 Aligned_cols=162 Identities=25% Similarity=0.361 Sum_probs=117.0
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhHHH
Q 005003 257 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~----l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~~~ 329 (720)
..|+|++++...+...+.. +++|.+ |-..+||.||+|+|||-||+++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r-------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR-------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC-------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5799999999999988876 444432 223578899999999999999999996 89999999999874
Q ss_pred H-----hhhchHHH-----HHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-------
Q 005003 330 F-----VGVGASRV-----RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------- 392 (720)
Q Consensus 330 ~-----~G~~~~~v-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~------- 392 (720)
+ .|..+..+ ..+-+..++++.|||++|||+.. + ..++|-||+-||.-.-
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------H---pdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------H---PDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------C---HHHHHHHHHHhcCCeeecCCCCE
Confidence 2 33222221 23445556677799999999986 2 3477777777764211
Q ss_pred --CCcEEEEEEeCCCC----------------------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 393 --NTGIIVIAATNRAD----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 393 --~~~ViVIaaTN~p~----------------------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
-.+.++|.|||--. ...|+++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 12589999998411 12355555 8888888888888888888876654
No 173
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=1.8e-09 Score=113.14 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=117.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC-CEEE---Ee----chhhHHHH---hhhc---h------HHHHHHH-HHHHhcCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV-PFFS---IS----GSEFVEMF---VGVG---A------SRVRDLF-KKAKENAP 350 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~-pf~~---vs----~s~~~~~~---~G~~---~------~~vr~lF-~~A~~~~P 350 (720)
.++|+||+|+|||++++.+++++.. .+.. ++ ..++.... .|.. . ..+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 2221 11 11222111 1211 1 1122222 22335667
Q ss_pred eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC---ccc----hhhcCCCcccceee
Q 005003 351 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD---ILD----SALLRPGRFDRQVT 423 (720)
Q Consensus 351 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~---~LD----~ALlrpgRFdr~I~ 423 (720)
++|+|||+|.+. ......+..+..... .....+.|+.+ ..++ .+. ..+.+ |+...++
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeee
Confidence 899999999972 122223333322211 11222333333 2222 221 12444 7777889
Q ss_pred ecCCCHHHHHHHHHHhhcCCCC-----cccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 424 VDVPDIRGRTEILKVHGSNKKF-----DADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 424 i~~Pd~~eR~~IL~~~l~~~~l-----~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
+++.+.++..+++...+..... -.+..++.+.+.+.|. ++.|..+|+.+...|..++...|+.+++++++..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999999887754321 1223477888889886 56699999999999999999999999999998764
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.17 E-value=2.2e-10 Score=104.87 Aligned_cols=126 Identities=34% Similarity=0.504 Sum_probs=83.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC---EEEEechhhHHH--------------HhhhchHHHHHHHHHHHhcCCeE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEFVEM--------------FVGVGASRVRDLFKKAKENAPCI 352 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~p---f~~vs~s~~~~~--------------~~G~~~~~vr~lF~~A~~~~P~I 352 (720)
+..++|+||||||||++++.+|..+..+ +++++++..... .........+..++.++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3479999999999999999999999775 888888754432 11234556778888888877899
Q ss_pred EEEccchhcccccCCCCCCCChHHHHHHHHH--HhhhcCccCCCcEEEEEEeCC-CCccchhhcCCCcccceeeecCC
Q 005003 353 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVP 427 (720)
Q Consensus 353 LfIDEID~l~~~r~~~~~~~~~e~~~~ln~L--L~~ldg~~~~~~ViVIaaTN~-p~~LD~ALlrpgRFdr~I~i~~P 427 (720)
|+|||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999984321 11111100 000111123456788999986 3334444444 88888877654
No 175
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.17 E-value=6.1e-10 Score=127.46 Aligned_cols=216 Identities=21% Similarity=0.272 Sum_probs=137.4
Q ss_pred ccccccccCCCCCccccccchHHHHHHHHHHHHhcC---chhhhh-------------------ccCcCCceEEEEccCC
Q 005003 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKK---PERFTA-------------------IGARIPKGVLLVGPPG 300 (720)
Q Consensus 243 ~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~---p~~~~~-------------------~g~~~prgVLL~GPPG 300 (720)
..++|+++..+..|.|+.|-+..-+.+...+..+.- .+++.+ .+.+.-|-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 567999999999999999999888876665543110 000111 1222235689999999
Q ss_pred ChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHH--------hcCCeEEEEccchhcccccCCCCCCC
Q 005003 301 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK--------ENAPCIVFVDEIDAVGRQRGTGIGGG 372 (720)
Q Consensus 301 TGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~--------~~~P~ILfIDEID~l~~~r~~~~~~~ 372 (720)
.|||+||+.+|+.+|+.++.+++|+-.. +..++..+..|- ...|..|+|||||--
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------- 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------- 399 (877)
T ss_pred CChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------
Confidence 9999999999999999999999987432 333444343332 245778889999874
Q ss_pred ChHHHHHHHHHHhh----hcCccCC---------C---cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHH
Q 005003 373 NDEREQTLNQLLTE----MDGFEGN---------T---GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 436 (720)
Q Consensus 373 ~~e~~~~ln~LL~~----ldg~~~~---------~---~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL 436 (720)
....-.++..++.. ..|-... . .--|||.+|... -|+|+.=--|-.+|.|..|...-..+-|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHH
Confidence 12222333333331 1111110 0 135788888643 4555421137778999999887777777
Q ss_pred HHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 437 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 437 ~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
+..+.+..+..+ ...|...++ ++-.||++.+|....+|.+.
T Consensus 478 ~~IC~rE~mr~d--~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 478 NEICHRENMRAD--SKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHhhhcCCCC--HHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 766666555433 444554444 44569999999988888653
No 176
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=8.4e-10 Score=121.63 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=123.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEE-----------
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF----------- 319 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~----------- 319 (720)
..+.++++|+|++++++.|.+.+..- +.|..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35678999999999999999877642 45668999999999999999999997632100
Q ss_pred --E--Eechhh--HH-----------H-Hhh--------hchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCC
Q 005003 320 --S--ISGSEF--VE-----------M-FVG--------VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGI 369 (720)
Q Consensus 320 --~--vs~s~~--~~-----------~-~~G--------~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~ 369 (720)
. -.|... +. . +.+ .....+|++-+.+. ...|.|++|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0 011111 00 0 001 12344666555442 3457899999999982
Q ss_pred CCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc
Q 005003 370 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV 449 (720)
Q Consensus 370 ~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv 449 (720)
....|.||..++. +..+.++|.+|+.++.+.+.+++ |+. .+.++.|+.++-.+++....... .+.
T Consensus 155 -------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~~---~~~ 219 (365)
T PRK07471 155 -------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPDL---PDD 219 (365)
T ss_pred -------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhcccC---CHH
Confidence 3467788888874 34567888889999999988888 774 88999999999999888764221 111
Q ss_pred cHHHHHHhCCCCcHHHHHHH
Q 005003 450 SLDVIAMRTPGFSGADLANL 469 (720)
Q Consensus 450 dl~~LA~~t~G~SgadL~~l 469 (720)
.+..++..+.| ++....++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~l 238 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRL 238 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHH
Confidence 12456666655 44433333
No 177
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.15 E-value=1.1e-09 Score=114.03 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=89.5
Q ss_pred CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC-------------CCccchhhcCC
Q 005003 349 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-------------ADILDSALLRP 415 (720)
Q Consensus 349 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~-------------p~~LD~ALlrp 415 (720)
-|.+|||||++.+ +-+ .+..|-..++. +-.-+||.|||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhML-----------DiE---cFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIE---CFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhH---HHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 4889999999988 222 33333333332 223477777875 4556667776
Q ss_pred CcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 416 GRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 416 gRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
|+- .|..-+.+.++.++|++.......+.-+. .+..++.....-|-+-.-+++.-|...|...|+..|+.+|++++-
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 553 56666778888999999887766554332 356666665555666666777788889999999999999999887
Q ss_pred HHHHc
Q 005003 495 DRIVA 499 (720)
Q Consensus 495 ~~v~~ 499 (720)
+-.+.
T Consensus 436 ~Lf~D 440 (456)
T KOG1942|consen 436 ELFLD 440 (456)
T ss_pred HHHHh
Confidence 65443
No 178
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.15 E-value=2e-09 Score=109.80 Aligned_cols=168 Identities=22% Similarity=0.331 Sum_probs=122.0
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
...++.+.+++|+|.+|+.|.+-...+... .+..+|||+|..|||||+|+||+-++. +..++.|+-+++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 445689999999999999988766654332 344589999999999999999997765 677889988876
Q ss_pred HHHHhhhchHHHHHHHHHHHhc-CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--CCCcEEEEEEeC
Q 005003 327 VEMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATN 403 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--~~~~ViVIaaTN 403 (720)
.. +..+++..+.. ..-|||+|++-.= ..+ .....|-..|||-. ...+|+|.||+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd---~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSFE----------EGD---DAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCc---hHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 54 45566666543 3579999987321 122 23344455556532 245799999999
Q ss_pred CCCccchh--------------------hcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc
Q 005003 404 RADILDSA--------------------LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA 447 (720)
Q Consensus 404 ~p~~LD~A--------------------LlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~ 447 (720)
+-+.++.. +--+.||...+.|.+++.++-..|+..++....++.
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 86655421 112359999999999999999999999988776654
No 179
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.15 E-value=5.7e-10 Score=111.41 Aligned_cols=144 Identities=18% Similarity=0.273 Sum_probs=98.8
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHHHhhhchHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 343 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~p------------------------f~~vs~s~~~~~~~G~~~~~vr~lF~ 343 (720)
+.|..+||+||+|+|||++|++++++.... +..++... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456789999999999999999999987432 22221110 0112345666666
Q ss_pred HHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 005003 344 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419 (720)
Q Consensus 344 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFd 419 (720)
.+.. ....|++|||+|.+. ....+.||..|+.. +...++|.+||.++.+.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE
Confidence 6543 335799999999982 22456788888753 3456677777778999999998 664
Q ss_pred ceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCC
Q 005003 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 460 (720)
Q Consensus 420 r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G 460 (720)
.+++++|+.++..++++.. .+. +..+..++..+.|
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999999998876 222 2235555655554
No 180
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.15 E-value=8.3e-10 Score=131.32 Aligned_cols=200 Identities=23% Similarity=0.334 Sum_probs=126.6
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 329 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~ 329 (720)
+.+|++++|.+.+.+.+.+.+..+.... .+|||+|++|||||++|++|.... +.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~----------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSD----------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4679999999999999988887764432 379999999999999999997754 679999999876432
Q ss_pred -----Hhhhc-------hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Cc----c
Q 005003 330 -----FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----E 391 (720)
Q Consensus 330 -----~~G~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~----~ 391 (720)
+.|.. .......|+.+ ...+||||||+.+ ....+..+..++..-. .. .
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 22210 01122345444 2469999999998 2333334444443211 00 1
Q ss_pred CCCcEEEEEEeCCCC--ccchhhcCCC---cccceeeecCCCHHHHHHHH----HHhhcC----CCCc----ccccHHHH
Q 005003 392 GNTGIIVIAATNRAD--ILDSALLRPG---RFDRQVTVDVPDIRGRTEIL----KVHGSN----KKFD----ADVSLDVI 454 (720)
Q Consensus 392 ~~~~ViVIaaTN~p~--~LD~ALlrpg---RFdr~I~i~~Pd~~eR~~IL----~~~l~~----~~l~----~dvdl~~L 454 (720)
...++.+|++|+..- .+....+++. |+. .+.+..|+..+|.+-+ +.++.+ .... ....+..|
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 124688999998631 1222222221 232 6788999999997633 332221 1111 12225666
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 005003 455 AMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 455 A~~t~G~SgadL~~lv~eAa~~A 477 (720)
....+-.+.++|+++++.|+..+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 66666678999999999998765
No 181
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.14 E-value=4.6e-11 Score=120.75 Aligned_cols=142 Identities=28% Similarity=0.422 Sum_probs=69.3
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc--------------------
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 314 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------------------- 314 (720)
+|+||+|++.+|+.+.-.+. | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998876554 1 2389999999999999999998732
Q ss_pred --------CCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh
Q 005003 315 --------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 386 (720)
Q Consensus 315 --------g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ 386 (720)
..||....-+.-....+|.+....-..+..|. ..|||+||+-.+ ...+++.|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 12444433332222333332211112233332 259999999877 34566666666
Q ss_pred hcCc-----------cCCCcEEEEEEeCC-----------------------CCccchhhcCCCcccceeeecCCCH
Q 005003 387 MDGF-----------EGNTGIIVIAATNR-----------------------ADILDSALLRPGRFDRQVTVDVPDI 429 (720)
Q Consensus 387 ldg~-----------~~~~~ViVIaaTN~-----------------------p~~LD~ALlrpgRFdr~I~i~~Pd~ 429 (720)
|+.- ....++++|+|+|. ...+...++. |||-++.++..+.
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 6431 12336899999984 1245556666 7777666665544
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.13 E-value=9.2e-10 Score=128.38 Aligned_cols=188 Identities=22% Similarity=0.323 Sum_probs=123.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC--CCEEEEechhhHHHHhhhchHHHHHHHHHH---------HhcCCeEEEEccchh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDA 360 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A---------~~~~P~ILfIDEID~ 360 (720)
||||.|+||||||++|++++..+. .||+.+..+...+...|.. .+...+... .+....+||||||+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 799999999999999999999764 4788887643333333321 011101000 011225999999999
Q ss_pred cccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCcEEEEEEeCCCC---ccchhhcCCCcccceeeec-
Q 005003 361 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVD- 425 (720)
Q Consensus 361 l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~~~ViVIaaTN~p~---~LD~ALlrpgRFdr~I~i~- 425 (720)
+. . .+++.|+..|+.-. ...++.||+|+|..+ .+.++|+. ||+.++.+.
T Consensus 96 l~-----------~---~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 96 LD-----------D---GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred CC-----------H---HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 82 2 34455555554211 124689999999865 78999999 999877775
Q ss_pred CCCHHHHHHHHHHhhcCC-------------------------CCcccccHHHHHHh--CCCCc-HHHHHHHHHHHHHHH
Q 005003 426 VPDIRGRTEILKVHGSNK-------------------------KFDADVSLDVIAMR--TPGFS-GADLANLLNEAAILA 477 (720)
Q Consensus 426 ~Pd~~eR~~IL~~~l~~~-------------------------~l~~dvdl~~LA~~--t~G~S-gadL~~lv~eAa~~A 477 (720)
.|+.++|.+|++.+.... .+.++ .+..++.. ..|.+ .+--..+++-|...|
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 457778888887754211 11111 12222221 12333 455567889999999
Q ss_pred HHhCCCccCHHHHHHHHHHHH
Q 005003 478 GRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~~v~ 498 (720)
..+|+..|+.+|+..|+.-++
T Consensus 239 al~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 239 ALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHhCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998776
No 183
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.12 E-value=7.2e-11 Score=111.78 Aligned_cols=113 Identities=35% Similarity=0.416 Sum_probs=71.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH--HHhhhchHH------HHHHHHHHHhcCCeEEEEccchhccc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGVGASR------VRDLFKKAKENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~--~~~G~~~~~------vr~lF~~A~~~~P~ILfIDEID~l~~ 363 (720)
+|+|+||||||||++|+.+|..++.+++.++++...+ .+.|.-.-. ....+..+. ..+++++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 5899999999999999999999999999999876543 222211100 000000111 14689999999987
Q ss_pred ccCCCCCCCChHHHHHHHHHHhhhcCc-------c-CCC------cEEEEEEeCCCC----ccchhhcCCCcc
Q 005003 364 QRGTGIGGGNDEREQTLNQLLTEMDGF-------E-GNT------GIIVIAATNRAD----ILDSALLRPGRF 418 (720)
Q Consensus 364 ~r~~~~~~~~~e~~~~ln~LL~~ldg~-------~-~~~------~ViVIaaTN~p~----~LD~ALlrpgRF 418 (720)
+.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 344455555555431100 1 111 489999999988 89999999 87
No 184
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=8.7e-10 Score=119.07 Aligned_cols=169 Identities=15% Similarity=0.266 Sum_probs=116.7
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC--------EEEEechhh
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEF 326 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p--------f~~vs~s~~ 326 (720)
+|+||+|++.+++.+...+.. .+.|+.+||+||+|+|||++|+++|..+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999988887742 2456689999999999999999999976432 22222110
Q ss_pred HHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 327 VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
. ...+...+|++.+.+.. ....|++||++|.+. ....|.||..++. ++.++++|.+|
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 0 11233457776665432 234699999999982 3356788888884 45566777777
Q ss_pred CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCC
Q 005003 403 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 460 (720)
Q Consensus 403 N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G 460 (720)
+.++.+.|.+++ |.. .+++..|+.++....+...... .. +...+.++..+.|
T Consensus 131 ~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 131 ENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred CChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 888999999999 664 8899999999888877765432 11 2224455555554
No 185
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=7.8e-10 Score=123.41 Aligned_cols=141 Identities=24% Similarity=0.436 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-----C--EEEEe----ch
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----P--FFSIS----GS 324 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-----p--f~~vs----~s 324 (720)
++++.+.++..+.+...+ .. .++++|+||||||||++|+.+|..+.. + .+.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---TI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---hc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 677777777666554443 32 237999999999999999999987742 1 22232 23
Q ss_pred hhHHHH--hhhchH----HHHHHHHHHHhc--CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh---------
Q 005003 325 EFVEMF--VGVGAS----RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--------- 387 (720)
Q Consensus 325 ~~~~~~--~G~~~~----~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l--------- 387 (720)
+++..+ .+.+-. .+.++...|+.. .|++||||||+.....+ .+..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 444332 111211 233445666543 58999999999863222 111111111
Q ss_pred -----------cCccCCCcEEEEEEeCCCC----ccchhhcCCCcccceeeecC
Q 005003 388 -----------DGFEGNTGIIVIAATNRAD----ILDSALLRPGRFDRQVTVDV 426 (720)
Q Consensus 388 -----------dg~~~~~~ViVIaaTN~p~----~LD~ALlrpgRFdr~I~i~~ 426 (720)
+.+....++.||||+|..+ .+|.|++| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2355567899999999987 79999999 996 566654
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=1.4e-09 Score=126.91 Aligned_cols=262 Identities=12% Similarity=0.138 Sum_probs=146.8
Q ss_pred cccccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE-
Q 005003 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS- 320 (720)
Q Consensus 242 s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~- 320 (720)
+....|.++..+.+++|++|+++..++++.++.....+ ....+.++|+||||||||++++.+|++++..+..
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 33456788899999999999999999888877654322 2223459999999999999999999998765433
Q ss_pred Ee---chhhH----------HHH--hhhchHHHHHHHHHHHh----------cCCeEEEEccchhcccccCCCCCCCChH
Q 005003 321 IS---GSEFV----------EMF--VGVGASRVRDLFKKAKE----------NAPCIVFVDEIDAVGRQRGTGIGGGNDE 375 (720)
Q Consensus 321 vs---~s~~~----------~~~--~G~~~~~vr~lF~~A~~----------~~P~ILfIDEID~l~~~r~~~~~~~~~e 375 (720)
.+ |.... +.+ .......++.++..+.. ....|||||||+.+...
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------- 210 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------- 210 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------
Confidence 11 11000 000 01122334455555432 24579999999987421
Q ss_pred HHHHHHHHHh-hhcCccCCCcEEEEEEeC-CCC--------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHh
Q 005003 376 REQTLNQLLT-EMDGFEGNTGIIVIAATN-RAD--------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 439 (720)
Q Consensus 376 ~~~~ln~LL~-~ldg~~~~~~ViVIaaTN-~p~--------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~ 439 (720)
....+..+|. ... ....+.+|++++ .+. .|.++++...|.. +|.|.+.......+.|+..
T Consensus 211 ~~~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rI 286 (637)
T TIGR00602 211 DTRALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRI 286 (637)
T ss_pred hHHHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHH
Confidence 1123444444 211 123333444333 121 1336777433553 7899999999866666655
Q ss_pred hcCCC--C------cccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-------hCCCccCHHHHHHHHHHHHcCccC-
Q 005003 440 GSNKK--F------DADVSLDVIAMRTPGFSGADLANLLNEAAILAGR-------RGKAAISSKEIDDSIDRIVAGMEG- 503 (720)
Q Consensus 440 l~~~~--l------~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r-------~~~~~It~~dl~~Al~~v~~~~~~- 503 (720)
+.... . .....+..|+.. +.+|++.+++.-...+.+ .+...++..++..+..+.......
T Consensus 287 l~~E~~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e 362 (637)
T TIGR00602 287 VTIEAKKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNE 362 (637)
T ss_pred HHhhhhccccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchh
Confidence 54321 1 111235566654 445888888776665432 223445555555444332110000
Q ss_pred -cc--cccCCccchhhHHHHHHHHHHhhc
Q 005003 504 -TV--MTDGKSKSLVAYHEVGHAICGTLT 529 (720)
Q Consensus 504 -~~--~~~~~~k~~vA~hEaGhAvv~~~l 529 (720)
.. .....+..+..+|-.|..+....-
T Consensus 363 ~~~l~~~~~rd~sl~lfhalgkily~Kr~ 391 (637)
T TIGR00602 363 NQEIQALGGKDVSLFLFRALGKILYCKRA 391 (637)
T ss_pred HHHHHhhccccchhHHHHHhChhhccccc
Confidence 00 112234456778888888765443
No 187
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.09 E-value=1.7e-09 Score=123.16 Aligned_cols=209 Identities=24% Similarity=0.322 Sum_probs=128.5
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC------------------
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------ 315 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g------------------ 315 (720)
.+|.++.|+..+++.+.-.+ .....++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 48999999988776543111 1224799999999999999999987431
Q ss_pred ----------CCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 316 ----------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 316 ----------~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
.||..-+.+.-....+|.+...-...+..|.. .+|||||++.+ +.. ++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~---~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERR---TLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHH---HHHHHHH
Confidence 12221111111112334333222345666544 49999999887 222 3444444
Q ss_pred hhcCcc-----------CCCcEEEEEEeCCCC---------------------ccchhhcCCCcccceeeecCCCHHH--
Q 005003 386 EMDGFE-----------GNTGIIVIAATNRAD---------------------ILDSALLRPGRFDRQVTVDVPDIRG-- 431 (720)
Q Consensus 386 ~ldg~~-----------~~~~ViVIaaTN~p~---------------------~LD~ALlrpgRFdr~I~i~~Pd~~e-- 431 (720)
.|+.-. ...++.+|+|+|... .++.+++. |||.++.++.|+.++
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 442211 234689999999742 47778998 999999999885321
Q ss_pred --------HHHHHHH----h----hcCCCCccccc-------------HH---HHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 432 --------RTEILKV----H----GSNKKFDADVS-------------LD---VIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 432 --------R~~IL~~----~----l~~~~l~~dvd-------------l~---~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
...+-+. . .+...+...+. .. .-+....|.|.+....+++-|...|.-
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1111100 0 00001111110 11 112234578999999999999999999
Q ss_pred hCCCccCHHHHHHHHH
Q 005003 480 RGKAAISSKEIDDSID 495 (720)
Q Consensus 480 ~~~~~It~~dl~~Al~ 495 (720)
++++.|+.+|+.+|+.
T Consensus 475 ~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 475 DQSDIITRQHLQEAVS 490 (506)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999999999985
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.07 E-value=8.8e-10 Score=111.74 Aligned_cols=207 Identities=21% Similarity=0.302 Sum_probs=127.4
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-C----CCEE
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-G----VPFF 319 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-g----~pf~ 319 (720)
..|++++++..+.||+|.++..+.+.-+...-..| +++|.||||||||+-+.++|+++ | --++
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 34889999999999999999999998888766655 59999999999999999999987 2 2355
Q ss_pred EEechhhHHHHhhhchHHHH---HHHHHHHhcC-C---eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC
Q 005003 320 SISGSEFVEMFVGVGASRVR---DLFKKAKENA-P---CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 392 (720)
Q Consensus 320 ~vs~s~~~~~~~G~~~~~vr---~lF~~A~~~~-P---~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~ 392 (720)
.++.|+-. +-..+| ..|.+-+-.- | .||++||.|.+ ....+|.+..-.+. +.
T Consensus 83 ELNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEi---yS- 141 (333)
T KOG0991|consen 83 ELNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEI---YS- 141 (333)
T ss_pred hccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHH---Hc-
Confidence 66665422 222333 3455443222 2 59999999998 23344554443332 22
Q ss_pred CCcEEEEEEeCCCCccchhhcCCCcccceeeecCC-CHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHH
Q 005003 393 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP-DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLN 471 (720)
Q Consensus 393 ~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~P-d~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~ 471 (720)
....+..++|..+.+-+.+.+ |.- .+.+... |..-..++++..-.+.-.-.+.-++.+.-...| |.++.+|
T Consensus 142 -~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 142 -NTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred -ccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 334677778888877777777 443 2233333 333333444433222221222235655554444 6777776
Q ss_pred HHHHHHHHhCCCccCHHHHHHHH
Q 005003 472 EAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 472 eAa~~A~r~~~~~It~~dl~~Al 494 (720)
..... -.|-..|+.+.+-+.+
T Consensus 214 nLQst--~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 214 NLQST--VNGFGLVNQENVFKVC 234 (333)
T ss_pred HHHHH--hccccccchhhhhhcc
Confidence 64433 3456667766655443
No 189
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.06 E-value=3.3e-09 Score=114.90 Aligned_cols=66 Identities=45% Similarity=0.704 Sum_probs=53.0
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechhhH
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFV 327 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~~~ 327 (720)
..+.++|+.++++..--+++.++..+ -..|++||.||||||||.||-++|+++| +||..++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 46799999999999998898887654 2346999999999999999999999996 899999998875
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.04 E-value=4.2e-09 Score=112.95 Aligned_cols=149 Identities=25% Similarity=0.341 Sum_probs=101.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---------------------
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--------------------- 315 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g--------------------- 315 (720)
++++|.+++...+...+.... +.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367777777777776665322 3344799999999999999999999886
Q ss_pred ---CCEEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc
Q 005003 316 ---VPFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 388 (720)
Q Consensus 316 ---~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld 388 (720)
-.++.++.++-... ......++++-+.... ...-|++|||+|.+- ....|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------------~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------------EDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhc
Confidence 35566666543321 0123345554444322 235799999999992 356788888887
Q ss_pred CccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHH
Q 005003 389 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 436 (720)
Q Consensus 389 g~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL 436 (720)
. +..+..+|.+||.++.+-+.+.+ |.. .+.|++|+...+....
T Consensus 135 e--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 135 E--PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWL 177 (325)
T ss_pred c--CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHh
Confidence 4 45567888899999999888888 664 6677665544443333
No 191
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.04 E-value=8.7e-10 Score=124.25 Aligned_cols=207 Identities=20% Similarity=0.273 Sum_probs=128.3
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 331 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~ 331 (720)
.+.+++|.+...+.+.+.+..+... ..+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 5678999998888888777654332 2379999999999999999997754 57999999987643321
Q ss_pred -----hhc-------hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Ccc----CC
Q 005003 332 -----GVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 393 (720)
Q Consensus 332 -----G~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~----~~ 393 (720)
|.. .......|+.| ...+||||||+.+ ..+.+..+.+++..-. ... ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceee
Confidence 110 00111123222 3468999999998 2334444444443211 000 12
Q ss_pred CcEEEEEEeCCCC-------ccchhhcCCCcccceeeecCCCHHHHHHH----HHHhhcC----CCCc----ccccHHHH
Q 005003 394 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHGSN----KKFD----ADVSLDVI 454 (720)
Q Consensus 394 ~~ViVIaaTN~p~-------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~I----L~~~l~~----~~l~----~dvdl~~L 454 (720)
.++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+- ++.++.. .... .+..+..|
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3688999988641 23333333 443 578889999999763 2333221 1111 12225667
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 455 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 455 A~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
....+-.+.++|+++++.|+..+ ....|+.+++.
T Consensus 350 ~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 77776678999999999998765 33467766653
No 192
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=5.5e-09 Score=113.04 Aligned_cols=183 Identities=15% Similarity=0.207 Sum_probs=123.1
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------------
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 317 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------------- 317 (720)
.|++|+|++++++.+.+.+..- +.|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999999888643 345589999999999999999999876321
Q ss_pred -EEEEechhhH------HH---Hhh--------hchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChH
Q 005003 318 -FFSISGSEFV------EM---FVG--------VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 375 (720)
Q Consensus 318 -f~~vs~s~~~------~~---~~G--------~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e 375 (720)
+..+...... .. ..| .....+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 1222111000 00 000 112346666555432 335799999999982
Q ss_pred HHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHH
Q 005003 376 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA 455 (720)
Q Consensus 376 ~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA 455 (720)
....|.||..|+... +.++|..|+.++.|-|.+++ |.. .+.|+.|+.++..++++........ +.+...++
T Consensus 138 -~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 346688888888643 34677777889999999999 774 8899999999999988876432211 12245677
Q ss_pred HhCCCCcHHHHHHHHH
Q 005003 456 MRTPGFSGADLANLLN 471 (720)
Q Consensus 456 ~~t~G~SgadL~~lv~ 471 (720)
....| +++...++++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 66665 4555544444
No 193
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.1e-09 Score=117.89 Aligned_cols=159 Identities=26% Similarity=0.367 Sum_probs=110.8
Q ss_pred HHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE-echhhHHHHhhhchHHHHHHHHHHH
Q 005003 268 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLFKKAK 346 (720)
Q Consensus 268 eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v-s~s~~~~~~~G~~~~~vr~lF~~A~ 346 (720)
+-.-++...++++++ +-..+||+||||+|||.||..+|...+.||+.+ |..+.+.......-..++..|+.|+
T Consensus 522 ~G~llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 522 DGKLLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred hHHHHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh
Confidence 333456667777653 234899999999999999999999999999975 4445443333333456899999999
Q ss_pred hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC-cEEEEEEeCCCCccch-hhcCCCcccceeee
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDS-ALLRPGRFDRQVTV 424 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~-~ViVIaaTN~p~~LD~-ALlrpgRFdr~I~i 424 (720)
+..-+||++|+|+.+..-- .-+.....-++..|+..+....+.+ +.+|++||.+.+.|.. .++. .|+..+++
T Consensus 596 kS~lsiivvDdiErLiD~v----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred cCcceEEEEcchhhhhccc----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 9988999999999986432 1245556667777777777655544 5777888877665543 3445 78888887
Q ss_pred cCCCH-HHHHHHHHH
Q 005003 425 DVPDI-RGRTEILKV 438 (720)
Q Consensus 425 ~~Pd~-~eR~~IL~~ 438 (720)
|.-.. ++..+++..
T Consensus 670 pnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEE 684 (744)
T ss_pred CccCchHHHHHHHHH
Confidence 65543 444555543
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.9e-10 Score=117.44 Aligned_cols=132 Identities=29% Similarity=0.439 Sum_probs=86.7
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhccCcCCc-eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-HH
Q 005003 257 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 330 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~----l~~p~~~~~~g~~~pr-gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~~ 330 (720)
+=|+|++.+|+.|.-.|-. +.+.. .+-.....+ +|||.||.|+|||+||+.+|+.+++||...++..+.+ .|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~--~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGY 138 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKE--DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGY 138 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccC--CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccc
Confidence 3478999999876543321 11111 001122333 6999999999999999999999999999999998876 58
Q ss_pred hhhchHHH-HHHHHHH----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc
Q 005003 331 VGVGASRV-RDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 390 (720)
Q Consensus 331 ~G~~~~~v-r~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~ 390 (720)
+|+....+ ..++..| .+....||+|||||.+.++..+.+-.-+-..+-+...||..++|-
T Consensus 139 VGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 139 VGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88765543 3444433 122347999999999987654332222222344556677777764
No 195
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.1e-10 Score=124.08 Aligned_cols=210 Identities=25% Similarity=0.348 Sum_probs=124.5
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC-----------------
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG----------------- 315 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g----------------- 315 (720)
..+|.||.|++.+|+.+.....- .+++|++||||||||++|+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999988766542 23799999999999999999866220
Q ss_pred ------------CCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHH
Q 005003 316 ------------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 383 (720)
Q Consensus 316 ------------~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~L 383 (720)
.||..-..+.-....+|.+..---.-...| ...|||+||+-.+ ..++++.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh--------------hHHHHHHH
Confidence 112111111111112222210000001111 1269999998766 33677777
Q ss_pred HhhhcCc-----------cCCCcEEEEEEeCCC-----------------------CccchhhcCCCcccceeeecCCCH
Q 005003 384 LTEMDGF-----------EGNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 429 (720)
Q Consensus 384 L~~ldg~-----------~~~~~ViVIaaTN~p-----------------------~~LD~ALlrpgRFdr~I~i~~Pd~ 429 (720)
-+-|+.- ....++.+|+|+|.. +.+...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 7666532 122357889999841 134556777 9999999988764
Q ss_pred HHH--------------HHHHHHh----hcCCCC--ccc----------------ccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 430 RGR--------------TEILKVH----GSNKKF--DAD----------------VSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 430 ~eR--------------~~IL~~~----l~~~~l--~~d----------------vdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
.++ ..+++.+ .+.... +.. .++-..+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 333 1222111 111111 111 1122223345567778888888888
Q ss_pred HHHHHHhCCCccCHHHHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~Al~ 495 (720)
..+|--.+...|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 8888888888888888888774
No 196
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=1.7e-09 Score=106.84 Aligned_cols=134 Identities=29% Similarity=0.448 Sum_probs=83.8
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH-----H
Q 005003 259 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 330 (720)
Q Consensus 259 I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~-----~ 330 (720)
|+|.+.+.+++.+.+..+... |.+|||+|++||||+++|++|-+.. +.||+.++|+.+.+. +
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578889999888888765543 3489999999999999999998754 579999999876532 3
Q ss_pred hhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Ccc----CCCcEE
Q 005003 331 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGII 397 (720)
Q Consensus 331 ~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~----~~~~Vi 397 (720)
.|... .....+|+.|... +||||||+.+ ....+..+.++|+.-. ... ...++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 33211 1123677777554 8999999999 3344555555554311 011 123699
Q ss_pred EEEEeCCCCccchhhcCCCccc
Q 005003 398 VIAATNRADILDSALLRPGRFD 419 (720)
Q Consensus 398 VIaaTN~p~~LD~ALlrpgRFd 419 (720)
+|++|+.+ +.. +...|+|.
T Consensus 137 iI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 137 IIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp EEEEESS---HHH-HHHTTSS-
T ss_pred EEeecCcC--HHH-HHHcCCCh
Confidence 99999963 332 33345554
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.99 E-value=1e-09 Score=108.68 Aligned_cols=110 Identities=35% Similarity=0.431 Sum_probs=72.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC----CEEEEechhhHHHHhhhchHHHHHHHHHH----HhcCCeEEEEccchhccc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~----pf~~vs~s~~~~~~~G~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~ 363 (720)
.+||+||+|+|||.+|+++|..+.. |++.++++++.+. +.....+..++..+ ......||||||||.+..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 6899999999999999999999996 9999999998761 11111122222111 011113999999999965
Q ss_pred ccCCCCCCCChHHHHHHHHHHhhhcCcc---------CCCcEEEEEEeCCCC
Q 005003 364 QRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGIIVIAATNRAD 406 (720)
Q Consensus 364 ~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~~~ViVIaaTN~p~ 406 (720)
. ...+.+-....+.+.||..+|+-. .-.++++|+|+|.-.
T Consensus 83 ~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 4 122233445567777777775421 124699999999744
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=7.3e-09 Score=123.86 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=122.4
Q ss_pred eEEEEc--cCCChHHHHHHHHHHhc-----CCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcC------CeEEEEccc
Q 005003 292 GVLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA------PCIVFVDEI 358 (720)
Q Consensus 292 gVLL~G--PPGTGKT~LArAlA~e~-----g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~------P~ILfIDEI 358 (720)
.-+..| |++.|||++|+++|+++ +.+++.+|+++.. +...+|++.+.+.... ..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 346678 99999999999999997 5689999999742 2235666665543322 269999999
Q ss_pred hhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHH
Q 005003 359 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 438 (720)
Q Consensus 359 D~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~ 438 (720)
|.+- ....+.|+..|+.. ..++.+|.+||.+..+.+++++ |+ ..+.|+.|+.++....++.
T Consensus 640 D~Lt--------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DALT--------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccCC--------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 9992 23567777777743 4568899999999999999998 77 4889999999888888877
Q ss_pred hhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 439 HGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 439 ~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
.+.+..+. ++..+..++..+.| +.+...++++.++.. ...|+.+++...
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 66543332 23357788887776 445555555554322 235777766544
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=9.8e-09 Score=111.85 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=107.5
Q ss_pred Ccccccc-chHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------------
Q 005003 255 TFDDVAG-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------- 317 (720)
Q Consensus 255 ~f~dI~G-~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------------- 317 (720)
.|++|.| ++.+++.+...+.. .+.|..+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788999 88899988887752 2456689999999999999999999986432
Q ss_pred --------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 318 --------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 318 --------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
+..+... . ...+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLK 132 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHH
Confidence 1111110 0 01123456666655432 234699999999982 346688999
Q ss_pred hhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHH
Q 005003 386 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 438 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~ 438 (720)
.++. ++.++++|.+|+.++.+.|.+++ |.. .+++..|+.++..+.++.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 8885 45567888888888999999999 664 789999999888777764
No 200
>PRK08116 hypothetical protein; Validated
Probab=98.97 E-value=5e-09 Score=111.00 Aligned_cols=123 Identities=21% Similarity=0.332 Sum_probs=76.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhh----chHHHHHHHHHHHhcCCeEEEEccchhcc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 362 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 362 (720)
+.|++|+|+||||||+||.++|+++ +.++++++.+++...+... ......++++... ...+|+|||++.-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4589999999999999999999975 8899999999887654321 1112223444332 3359999999653
Q ss_pred cccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC-Cc----cchhhcCCCcc---cceeeecCCCH
Q 005003 363 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-DI----LDSALLRPGRF---DRQVTVDVPDI 429 (720)
Q Consensus 363 ~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p-~~----LD~ALlrpgRF---dr~I~i~~Pd~ 429 (720)
...++....+..++... . ..+..+|.|||.+ +. ++..+.+ |+ ...|.+.-||.
T Consensus 191 --------~~t~~~~~~l~~iin~r---~-~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 --------RDTEWAREKVYNIIDSR---Y-RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred --------CCCHHHHHHHHHHHHHH---H-HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 12344444455555432 1 2334577788863 33 4556666 53 22455555554
No 201
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.96 E-value=7.3e-09 Score=117.64 Aligned_cols=209 Identities=20% Similarity=0.289 Sum_probs=132.2
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH-
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF- 330 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~- 330 (720)
.+.+++|.+...+++.+.+..+... ..++++.|++|||||++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999999888888777654433 2379999999999999999998765 5799999998764321
Q ss_pred ----hhhchH-------HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc-----Cc-cCC
Q 005003 331 ----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GF-EGN 393 (720)
Q Consensus 331 ----~G~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld-----g~-~~~ 393 (720)
.|.... .....|+.+ ....|||||||.+. ...+..+..++..-. +. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 121100 001123222 24589999999982 333444444443211 00 012
Q ss_pred CcEEEEEEeCCCC-------ccchhhcCCCcccceeeecCCCHHHHHHH----HHHhhcC----CC-----CcccccHHH
Q 005003 394 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHGSN----KK-----FDADVSLDV 453 (720)
Q Consensus 394 ~~ViVIaaTN~p~-------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~I----L~~~l~~----~~-----l~~dvdl~~ 453 (720)
.++.+|+||+..- .+.+.|.. ||. .+.+..|+..+|.+- ++.++.. .. +. +..+..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~ 347 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLH-PETEAA 347 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcC-HHHHHH
Confidence 3578999987631 23344444 553 578888998888763 3333321 11 12 223666
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 454 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 454 LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
|....+-.+.++|+++++.|...+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 777777779999999999998766 34578888875443
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.94 E-value=7.2e-09 Score=112.99 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=62.8
Q ss_pred Ccc-ccccchHHHHHHHHHHHHhcCchhhhhccCc-CCceEEEEccCCChHHHHHHHHHHhcCC-------CEEEEec--
Q 005003 255 TFD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSISG-- 323 (720)
Q Consensus 255 ~f~-dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~-~prgVLL~GPPGTGKT~LArAlA~e~g~-------pf~~vs~-- 323 (720)
-|+ ++.|++++++++.+.+..... |.. ..+.++|+||||+|||++|++||+.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~-------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ-------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 466 999999998866655443321 222 2467899999999999999999999976 9999988
Q ss_pred --hhhHHHHhhhchHHHHHHHHHH
Q 005003 324 --SEFVEMFVGVGASRVRDLFKKA 345 (720)
Q Consensus 324 --s~~~~~~~G~~~~~vr~lF~~A 345 (720)
+.+.+..++..+..+|+.|.+.
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHH
Confidence 7777766666666666666443
No 203
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=9.7e-09 Score=111.75 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=104.1
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHHHhhhchHHHHHHH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLF 342 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~p------------------------f~~vs~s~~~~~~~G~~~~~vr~lF 342 (720)
.+.|.++||+||+|+|||++|+++|+.+.+. ++.+...+- -...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 3567789999999999999999999987541 222211000 0012345677776
Q ss_pred HHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcc
Q 005003 343 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418 (720)
Q Consensus 343 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRF 418 (720)
+.+.. ....|++|||+|.+ .....|.||+.++. +..++++|.+|+.++.+.|.+++ |.
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc
Confidence 66543 33568999999998 23577889998885 44678999999999999999999 77
Q ss_pred cceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCC
Q 005003 419 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 460 (720)
Q Consensus 419 dr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G 460 (720)
. .+.+++|+.++-.+.+...... ..+.+...++....|
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 5 6899999999888888765421 112223445555555
No 204
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.89 E-value=2.9e-08 Score=112.13 Aligned_cols=209 Identities=22% Similarity=0.327 Sum_probs=128.4
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH-
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF- 330 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~- 330 (720)
.+.+++|.+....++.+.+..+.... .+++++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQ----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCC----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45678998888887777666554432 379999999999999999997654 5799999998764322
Q ss_pred ----hhhchH-------HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Ccc----CC
Q 005003 331 ----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 393 (720)
Q Consensus 331 ----~G~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~----~~ 393 (720)
.|.... .....|..| ...+|||||||.+. ...+..+..++..-. ... ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 121100 001123222 24689999999982 233333333433211 000 12
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccc-------eeeecCCCHHHHHHHHH----HhhcCC---------CCcccccHHH
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTEILK----VHGSNK---------KFDADVSLDV 453 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr-------~I~i~~Pd~~eR~~IL~----~~l~~~---------~l~~dvdl~~ 453 (720)
.++.+|++||..- ..+.+.|+|.. .+.+..|+..+|.+-+. .++.+. .+. +..++.
T Consensus 277 ~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~ 352 (457)
T PRK11361 277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDID-PMAMSL 352 (457)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC-HHHHHH
Confidence 3588999998631 12233333332 57788999999865332 222211 111 122566
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 454 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 454 LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+....+..+.++|+++++.|...+ ....|+.+|+...+
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 666666678999999999988654 34578888876443
No 205
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.3e-08 Score=108.27 Aligned_cols=83 Identities=31% Similarity=0.452 Sum_probs=63.4
Q ss_pred eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCcEEEEEEeC----CCCccchhhcCCCcc
Q 005003 351 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRF 418 (720)
Q Consensus 351 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~~~ViVIaaTN----~p~~LD~ALlrpgRF 418 (720)
.|+||||||.++.+.+. ++.+-.++.+...||-.++|.. ..+.+++||+.. .|..|=|.|.- ||
T Consensus 252 GIvFIDEIDKIa~~~~~--g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--Rf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGS--GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RF 327 (444)
T ss_pred CeEEEehhhHHHhcCCC--CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CC
Confidence 69999999999876543 2224456667778888777653 234689998874 57788888875 99
Q ss_pred cceeeecCCCHHHHHHHHH
Q 005003 419 DRQVTVDVPDIRGRTEILK 437 (720)
Q Consensus 419 dr~I~i~~Pd~~eR~~IL~ 437 (720)
--.+++...+.++-.+||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999998888874
No 206
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.86 E-value=1.6e-08 Score=114.50 Aligned_cols=208 Identities=19% Similarity=0.282 Sum_probs=127.7
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH--
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 330 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~-- 330 (720)
..+++|.+....++.+.+..+... +.++++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456889988888887777654433 2379999999999999999997754 6799999998764322
Q ss_pred ---hhhchH-------HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC--cc----CCC
Q 005003 331 ---VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FE----GNT 394 (720)
Q Consensus 331 ---~G~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg--~~----~~~ 394 (720)
.|.... .....|.. ...++|||||||.+ ..+.+..+..++..-.. .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 121000 00111222 23578999999998 23344444444442110 00 122
Q ss_pred cEEEEEEeCCCC-------ccchhhcCCCcccceeeecCCCHHHHHHHH----HHhhcC----C-----CCcccccHHHH
Q 005003 395 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHGSN----K-----KFDADVSLDVI 454 (720)
Q Consensus 395 ~ViVIaaTN~p~-------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL----~~~l~~----~-----~l~~dvdl~~L 454 (720)
++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+-+ +.++.. . .+. +..+..|
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L 344 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLD-PEALERL 344 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcC-HHHHHHH
Confidence 578899987531 22233333 333 4678888888776533 332221 1 111 2225566
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 455 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 455 A~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
....+--+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 66666668899999999998766 34578888887554
No 207
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.86 E-value=2e-08 Score=110.24 Aligned_cols=160 Identities=27% Similarity=0.445 Sum_probs=102.2
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-------CCCEEE-----
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFS----- 320 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~----- 320 (720)
.+.|.-++|++..|..|.-- .-+|+ -.|+||.|+.|||||+++|+||.-+ |+||-.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 57899999999999865432 22332 2389999999999999999999855 332210
Q ss_pred -Eechh-------------------hHHHHhhhchHHHH------HHHHH----------HHhcCCeEEEEccchhcccc
Q 005003 321 -ISGSE-------------------FVEMFVGVGASRVR------DLFKK----------AKENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 321 -vs~s~-------------------~~~~~~G~~~~~vr------~lF~~----------A~~~~P~ILfIDEID~l~~~ 364 (720)
-.|.. |++.-.|.++.++- ...+. |+. ...|+++||+..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc---
Confidence 01111 11111233333221 11110 111 1269999999888
Q ss_pred cCCCCCCCChHHHHHHHHHHhhhcC---------c--cCCCcEEEEEEeCCCC-ccchhhcCCCcccceeeecCC-CHHH
Q 005003 365 RGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRG 431 (720)
Q Consensus 365 r~~~~~~~~~e~~~~ln~LL~~ldg---------~--~~~~~ViVIaaTN~p~-~LD~ALlrpgRFdr~I~i~~P-d~~e 431 (720)
+ .+.++.||..+.. + ....++++|+|+|..+ .|-|.|+. ||...|.+..| +.++
T Consensus 157 --------~---d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 --------D---DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred --------c---HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 2 3455666655432 1 2234699999999754 78889999 99999999877 6888
Q ss_pred HHHHHHHhhc
Q 005003 432 RTEILKVHGS 441 (720)
Q Consensus 432 R~~IL~~~l~ 441 (720)
|.+|.+..+.
T Consensus 224 rv~Ii~r~~~ 233 (423)
T COG1239 224 RVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHH
Confidence 9888876543
No 208
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.85 E-value=3.7e-08 Score=117.51 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=88.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhh-----------hhccCcCCceEEEEccCCChHHHHHHHHHHhcC-------CCE
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERF-----------TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPF 318 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~-----------~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g-------~pf 318 (720)
-.|.|.+.+|..+. +..+....+. .....+-.-+|||+|+||||||.+|+++++-.. .++
T Consensus 450 P~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~ 527 (915)
T PTZ00111 450 PSIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSS 527 (915)
T ss_pred CeEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCC
Confidence 35778888887653 2222221110 001123344799999999999999999987542 355
Q ss_pred EEEechhhHHHHh-hhchHHH-HHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc------
Q 005003 319 FSISGSEFVEMFV-GVGASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------ 390 (720)
Q Consensus 319 ~~vs~s~~~~~~~-G~~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~------ 390 (720)
..+.+..+..... ..+...+ ...+..| ...+++|||+|.+. ...+.. |++.|+.-
T Consensus 528 s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms-----------~~~Q~a---LlEaMEqqtIsI~K 590 (915)
T PTZ00111 528 SSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCH-----------NESRLS---LYEVMEQQTVTIAK 590 (915)
T ss_pred ccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhCC-----------HHHHHH---HHHHHhCCEEEEec
Confidence 5554443321000 0000000 0111112 23599999999982 223333 44444321
Q ss_pred -----cCCCcEEEEEEeCCCC-------------ccchhhcCCCccccee-eecCCCHHHHHHH
Q 005003 391 -----EGNTGIIVIAATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEI 435 (720)
Q Consensus 391 -----~~~~~ViVIaaTN~p~-------------~LD~ALlrpgRFdr~I-~i~~Pd~~eR~~I 435 (720)
.-+..+.||||+|... .|+++|++ |||..+ .++.|+.+.=..|
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 1134689999999732 57899999 999754 4566765544443
No 209
>PRK15115 response regulator GlrR; Provisional
Probab=98.83 E-value=2.1e-08 Score=113.05 Aligned_cols=205 Identities=23% Similarity=0.362 Sum_probs=123.8
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh---
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV--- 331 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~--- 331 (720)
.++|.+.....+.+.+..+... ...++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 5677776666655555444322 2269999999999999999997764 57999999987643221
Q ss_pred --hhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--CccC----CCcE
Q 005003 332 --GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 396 (720)
Q Consensus 332 --G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~~----~~~V 396 (720)
|... .....+|+.+ ...+|||||||.+ ....+..+..++..-. .... ..++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 1100 0001122222 3468999999998 2333444444443211 0111 1268
Q ss_pred EEEEEeCCCCccchhhcCCCcccc-------eeeecCCCHHHHHHHH----HHhhcCC----C-----CcccccHHHHHH
Q 005003 397 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTEIL----KVHGSNK----K-----FDADVSLDVIAM 456 (720)
Q Consensus 397 iVIaaTN~p~~LD~ALlrpgRFdr-------~I~i~~Pd~~eR~~IL----~~~l~~~----~-----l~~dvdl~~LA~ 456 (720)
.+|+||+.. ++..+ ..|+|.. .+.+..|+..+|.+-+ +.++... . +. +..+..|..
T Consensus 271 rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~ 346 (444)
T PRK15115 271 RIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFS-TDAMKRLMT 346 (444)
T ss_pred EEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcC-HHHHHHHHh
Confidence 999999863 33332 2344421 5678889999996522 3333211 1 22 223667777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 457 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 457 ~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
..+..+.++|+++++.|...+ ....|+.+++...
T Consensus 347 ~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 347 ASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 776779999999999988654 3457888777544
No 210
>PRK12377 putative replication protein; Provisional
Probab=98.83 E-value=3.1e-08 Score=103.77 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=66.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhhch--HHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~~~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
.+++|+||||||||+||.|+|+++ +.++++++..++...+...-. ....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 489999999999999999999876 788999999888875432110 1122334433 345799999997652
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
.++.....+.+++..-- ....-+|.|||..
T Consensus 177 ------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred ------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 23445566666666432 1223467778863
No 211
>PRK08181 transposase; Validated
Probab=98.82 E-value=3.7e-08 Score=104.34 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=77.7
Q ss_pred CCccccccchHHHHHHHHHH-HHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH
Q 005003 254 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 329 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv-~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~ 329 (720)
+.|+...+.+.....-.... +|+.. ..+++|+||||||||+||.+++.++ |..+++++..++++.
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~~-----------~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLAK-----------GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHhc-----------CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 44555555554444333333 34432 2389999999999999999998754 788999999998876
Q ss_pred Hhhh-chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 330 FVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 330 ~~G~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
+... ........++.. ..+.+|+|||++... ..+.....+.+++....+ + + -+|.|||.+
T Consensus 149 l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~---------~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~~ 209 (269)
T PRK08181 149 LQVARRELQLESAIAKL--DKFDLLILDDLAYVT---------KDQAETSVLFELISARYE---R-R-SILITANQP 209 (269)
T ss_pred HHHHHhCCcHHHHHHHH--hcCCEEEEecccccc---------CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCCC
Confidence 5322 112233344443 245799999998763 233444556666654322 1 2 367777763
No 212
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.82 E-value=6.7e-09 Score=98.77 Aligned_cols=127 Identities=28% Similarity=0.490 Sum_probs=81.3
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhHHHHhhhchH
Q 005003 260 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMFVGVGAS 336 (720)
Q Consensus 260 ~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~~~~~G~~~~ 336 (720)
+|.+.+.+++++-+..+.... .+|||+|+|||||+++|+++....+ .||+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477888888888888766443 3799999999999999999988664 477777776533
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC-C-C-----ccc
Q 005003 337 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-A-D-----ILD 409 (720)
Q Consensus 337 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~-p-~-----~LD 409 (720)
.++++.+ .+.+|||+|+|.+ +.+.+..+.+++...+ +.++.+|+++.. + + .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccchh
Confidence 3355554 5569999999999 3444555555555432 345566666654 2 2 355
Q ss_pred hhhcCCCcccceeeecCCC
Q 005003 410 SALLRPGRFDRQVTVDVPD 428 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd 428 (720)
+.|.. ||. .+.+..|+
T Consensus 122 ~~L~~--~l~-~~~i~lPp 137 (138)
T PF14532_consen 122 PDLYY--RLS-QLEIHLPP 137 (138)
T ss_dssp HHHHH--HCS-TCEEEE--
T ss_pred HHHHH--HhC-CCEEeCCC
Confidence 55655 555 34555554
No 213
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.81 E-value=2.5e-08 Score=116.69 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=63.3
Q ss_pred cEEEEEEeCCC--CccchhhcCCCccc---ceeeec--CC-CHHHHHHHHHHhhcCCC---Cccccc---HHHHHH---h
Q 005003 395 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VP-DIRGRTEILKVHGSNKK---FDADVS---LDVIAM---R 457 (720)
Q Consensus 395 ~ViVIaaTN~p--~~LD~ALlrpgRFd---r~I~i~--~P-d~~eR~~IL~~~l~~~~---l~~dvd---l~~LA~---~ 457 (720)
++.||+++|+. ..+||+|.. ||. ..+.++ .+ +.+.+..+++...+... ....++ +..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999874 467899988 775 334443 22 24445555554332211 111222 222221 1
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 458 TPG------FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 458 t~G------~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
..| ...++|.+++++|...|..+++..|+.+|+.+|..+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 346899999999999999999999999999988754
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.80 E-value=4.6e-08 Score=102.18 Aligned_cols=130 Identities=17% Similarity=0.260 Sum_probs=81.4
Q ss_pred CCCccccccc-hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 253 GVTFDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 253 ~~~f~dI~G~-de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
+.+|++..-. +..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +.++++++.+++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 4577776533 333333334444433211 012489999999999999999999987 78999999999887
Q ss_pred HHhhh---chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 329 MFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 329 ~~~G~---~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
.+... ......++++... ..++|+|||++... ..+.....+.+++..-- ..+-.+|.+||.
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl 204 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCC
Confidence 54332 1112234454443 45799999998862 23455567777766421 223457778886
No 215
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.80 E-value=4.5e-08 Score=103.72 Aligned_cols=200 Identities=19% Similarity=0.183 Sum_probs=127.4
Q ss_pred ccccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 243 ~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
...-+++++++-+++|+++.++....+.+..+.-+.| +.|+|||||||||+...+.|..+..|.-+-
T Consensus 27 ~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP------------h~L~YgPPGtGktsti~a~a~~ly~~~~~~- 93 (360)
T KOG0990|consen 27 YPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP------------HLLFYGPPGTGKTSTILANARDFYSPHPTT- 93 (360)
T ss_pred cCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC------------cccccCCCCCCCCCchhhhhhhhcCCCCch-
Confidence 3344678889999999999999999888774433332 799999999999999999999987761111
Q ss_pred chhhHHHH----hhhch-HHHHHHHHHHHh-------cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc
Q 005003 323 GSEFVEMF----VGVGA-SRVRDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 390 (720)
Q Consensus 323 ~s~~~~~~----~G~~~-~~vr~lF~~A~~-------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~ 390 (720)
+-+.+.. .|... +.--..|..++. ..+..+++||.|++. ....|+|-..++.+
T Consensus 94 -~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek~ 158 (360)
T KOG0990|consen 94 -SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEKY 158 (360)
T ss_pred -hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHHh
Confidence 1111111 11111 112234555543 267899999999983 23445555566655
Q ss_pred cCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHHhCCCCcHHHHHHH
Q 005003 391 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANL 469 (720)
Q Consensus 391 ~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~~t~G~SgadL~~l 469 (720)
..+ +.++.-+|++..+.|++++ |+. .+.+..-+...-...+.+++.........+ ...+++ .+..|.+..
T Consensus 159 t~n--~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a 229 (360)
T KOG0990|consen 159 TAN--TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVA 229 (360)
T ss_pred ccc--eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHH
Confidence 554 4555667999999999998 776 445555566666667777665544432222 222333 344577777
Q ss_pred HHHHHHHHHH
Q 005003 470 LNEAAILAGR 479 (720)
Q Consensus 470 v~eAa~~A~r 479 (720)
+|.....+..
T Consensus 230 ~n~Lqs~~~~ 239 (360)
T KOG0990|consen 230 LNYLQSILKK 239 (360)
T ss_pred HHHHHHHHHH
Confidence 7765555543
No 216
>PRK06526 transposase; Provisional
Probab=98.76 E-value=3.4e-08 Score=103.81 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=65.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhhc-hHHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
+.+++|+||||||||+||.+++.++ |..+.+++..++.+...... .......+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 3489999999999999999998865 78888888888877653211 11222333332 346799999998862
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
.+.+....+.+++....+ + + .+|.|||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 233444556666654321 1 2 367778864
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=4.4e-08 Score=106.99 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=97.1
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCE-------------------------EEEechhhH--------------
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------------------------FSISGSEFV-------------- 327 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf-------------------------~~vs~s~~~-------------- 327 (720)
.+.|.++||+||+|+||+++|+++|..+.+.- ..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 36788999999999999999999998775421 111110000
Q ss_pred --HH------H-hhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 328 --EM------F-VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 328 --~~------~-~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
+. . ...+...+|++.+.+.. ....|++||++|.+ .....|.||+.++ ++..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCc
Confidence 00 0 01123566776665532 22369999999998 2457789999998 4667
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHh
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 439 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~ 439 (720)
++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 89999999999999999999 77 48999999999888888764
No 218
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=2.3e-07 Score=97.38 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=90.7
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC------------CCccchhhcCCCc
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 417 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~------------p~~LD~ALlrpgR 417 (720)
|.+|||||+|.+ +-+.-..+|.-|+. ++. -++|.+||+ |+-++-.++. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~~----PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DMA----PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--ccC----cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 778888888877 33444555555541 222 255555663 5567777776 5
Q ss_pred ccceeeecCCCHHHHHHHHHHhhcCCCCccccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 418 FDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 418 Fdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
.- .|...+.+.++.++||+..+......-+.+ ++.|......-|-+--.+++..|.+.|.++....++.+|+..+..-
T Consensus 350 ~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 ML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred hh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 53 677778899999999999987755443322 4555555555566666789999999999999999999999999876
Q ss_pred HHcC
Q 005003 497 IVAG 500 (720)
Q Consensus 497 v~~~ 500 (720)
.+..
T Consensus 429 FlD~ 432 (454)
T KOG2680|consen 429 FLDE 432 (454)
T ss_pred Hhhh
Confidence 5543
No 219
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.74 E-value=3.5e-08 Score=96.80 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=87.6
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------------------
Q 005003 261 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------------- 317 (720)
Q Consensus 261 G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p----------------------- 317 (720)
|++++++.|.+.+..- +.|..+||+||+|+||+++|+++|..+-+.
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 6777888777777532 456689999999999999999999976321
Q ss_pred EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005003 318 FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 393 (720)
Q Consensus 318 f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~ 393 (720)
++.++..... .......++++.+.+.. ...-|++|||+|.+ .....|.||..|+. +.
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TT
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcC--CC
Confidence 2222221100 01134566666665532 33569999999998 34577889998884 45
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccceeeecC
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~ 426 (720)
.++++|.+|+.++.+-|.+++ |.- .+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 678999999999999999999 653 455543
No 220
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.73 E-value=1.3e-08 Score=95.56 Aligned_cols=111 Identities=32% Similarity=0.392 Sum_probs=59.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEech-hhH-HHHhhhchHHHH-HHHHHHHh-cCCeEEEEccchhcccccCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV-EMFVGVGASRVR-DLFKKAKE-NAPCIVFVDEIDAVGRQRGT 367 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s-~~~-~~~~G~~~~~vr-~lF~~A~~-~~P~ILfIDEID~l~~~r~~ 367 (720)
+|||.|+||+|||++|+++|+..+..|..+.+. ++. +...|...-... ..|+..+. --..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999999874 332 222332100000 00000000 00259999999886
Q ss_pred CCCCCChHHHHHHHHHHhhhcCc---------cCCCcEEEEEEeCCCC-----ccchhhcCCCcc
Q 005003 368 GIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD-----ILDSALLRPGRF 418 (720)
Q Consensus 368 ~~~~~~~e~~~~ln~LL~~ldg~---------~~~~~ViVIaaTN~p~-----~LD~ALlrpgRF 418 (720)
..++...||+.|.+- .-...+.||||-|..+ .|+++++. ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 234556666665432 2234689999999866 68888888 77
No 221
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.2e-08 Score=107.13 Aligned_cols=98 Identities=32% Similarity=0.516 Sum_probs=69.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-HHhhhc-hHHHHHHHHHHH----hcCCeEEEEccchhccccc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~~~G~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r 365 (720)
+|||.||+|+|||+||+.+|+-+++||..++|..+.. .|+|+. +..+..++..|. +....|+||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999998865 588864 344566666552 2345799999999997443
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDG 389 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg 389 (720)
..-...-+-..+-+...||..++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 221111111123344556666655
No 222
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.72 E-value=9.7e-08 Score=102.21 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=136.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 327 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~ 327 (720)
.....|+.+++.+...+.+.+-...+..-+ .++||.|..||||-++||+.-... ..||+.+||..+-
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlD----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLD----------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhccC----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 345679999999888887766555444332 269999999999999999985433 6899999998775
Q ss_pred HH-----Hhhhch--HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------C
Q 005003 328 EM-----FVGVGA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------G 392 (720)
Q Consensus 328 ~~-----~~G~~~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~ 392 (720)
+. ..|..+ +.-..+|++|... .+|+|||..+ +...+..+..+|+ ||-- -
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~--DGtFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLN--DGTFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhc--CCceeecCCcceE
Confidence 42 233322 4456788888654 7899999887 3344444444444 2211 1
Q ss_pred CCcEEEEEEeCCC--CccchhhcCCCcccc--eeeecCCCHHHHHHHH--------HHhhcCCCCc-cccc---HHHHHH
Q 005003 393 NTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL--------KVHGSNKKFD-ADVS---LDVIAM 456 (720)
Q Consensus 393 ~~~ViVIaaTN~p--~~LD~ALlrpgRFdr--~I~i~~Pd~~eR~~IL--------~~~l~~~~l~-~dvd---l~~LA~ 456 (720)
.-+|.|||||..+ +..+..-.|...|.| +..+..|...+|..-+ ..+..+.... +..+ +..+.+
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 1259999999753 333444444444444 7888999999886532 2333332221 1222 455566
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 457 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 457 ~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
..+--+.++|.|++-.|+... ....++.+|+.
T Consensus 412 y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 412 YAWPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred cCCCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 656668899999999998776 23455555553
No 223
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.71 E-value=6.9e-08 Score=108.53 Aligned_cols=205 Identities=24% Similarity=0.339 Sum_probs=122.7
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh---
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV--- 331 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~--- 331 (720)
.++|.+.....+.+.+..+... ...++++|++||||+++|+++.... +.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~----------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS----------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC----------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 4677777777666655544322 2479999999999999999996543 57999999987643321
Q ss_pred --hhchH-------HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Ccc----CCCcE
Q 005003 332 --GVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGI 396 (720)
Q Consensus 332 --G~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~----~~~~V 396 (720)
|.... ....+|.. ..+++|||||||.+. ...+..+..++..-. ... ...++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 11000 00111222 246799999999993 233333333332211 000 11257
Q ss_pred EEEEEeCCCCccchhhcCCCcccc-------eeeecCCCHHHHHH----HHHHhhcCC---------CCcccccHHHHHH
Q 005003 397 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSNK---------KFDADVSLDVIAM 456 (720)
Q Consensus 397 iVIaaTN~p~~LD~ALlrpgRFdr-------~I~i~~Pd~~eR~~----IL~~~l~~~---------~l~~dvdl~~LA~ 456 (720)
.+|++|+.+- .....+|+|.+ .+.+..|+..+|.+ +++.++... .+. +..+..|..
T Consensus 276 rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~-~~a~~~L~~ 351 (441)
T PRK10365 276 RLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFT-PQAMDLLIH 351 (441)
T ss_pred EEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcC-HHHHHHHHh
Confidence 7888887632 12334445533 67888899998865 233333221 112 223566666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 005003 457 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 493 (720)
Q Consensus 457 ~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~A 493 (720)
..+.-+.++|+++++.|...+ ....|+.+++...
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 666668899999999987654 3456888777544
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1.4e-07 Score=102.77 Aligned_cols=111 Identities=19% Similarity=0.295 Sum_probs=70.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhh---chHHHHHHHHHHHhcCCeEEEEccchhcccc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~---~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 364 (720)
.+++|+||||||||+||.|+|+++ |..+++++..++...+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 589999999999999999999986 7899999999988765321 1111122233333 34699999997752
Q ss_pred cCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC-CCc----cchhhcCCCcc
Q 005003 365 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLRPGRF 418 (720)
Q Consensus 365 r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~-p~~----LD~ALlrpgRF 418 (720)
.++.....+..++...- .+ +--+|.|||. ++. +++.+.+ |+
T Consensus 260 -------~t~~~~~~Lf~iin~R~---~~-~k~tIiTSNl~~~el~~~~~eri~S--RL 305 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRL---LR-QKKMIISTNLSLEELLKTYSERISS--RL 305 (329)
T ss_pred -------CCHHHHHHHHHHHHHHH---HC-CCCEEEECCCCHHHHHHHHhHHHHH--HH
Confidence 23444445555555431 11 2236667775 332 4556665 55
No 225
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.67 E-value=4.2e-07 Score=104.51 Aligned_cols=196 Identities=19% Similarity=0.295 Sum_probs=123.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----------CCCEEEEechhhHH---HH-------hhhc------hHHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE---MF-------VGVG------ASRVRDLFKKA 345 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~----------g~pf~~vs~s~~~~---~~-------~G~~------~~~vr~lF~~A 345 (720)
.++++|-||||||.+++.+-.++ ..+++.+++-.+.+ -| .|.. ...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68999999999999999997744 35677787755542 11 2221 11222233311
Q ss_pred -HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcC---CCcccc-
Q 005003 346 -KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR---PGRFDR- 420 (720)
Q Consensus 346 -~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlr---pgRFdr- 420 (720)
-+..+|||+|||+|.+..+. +.++..++...- .++.+++||+..|.-+. +..++- +-|++.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccC-HHHHhccchhhhccce
Confidence 23457999999999997542 446666555332 23567888888887553 223321 115553
Q ss_pred eeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcH--HHHHHHHHHHHHHHHHhCC-------CccCHHHHH
Q 005003 421 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG--ADLANLLNEAAILAGRRGK-------AAISSKEID 491 (720)
Q Consensus 421 ~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~Sg--adL~~lv~eAa~~A~r~~~-------~~It~~dl~ 491 (720)
.+.|.+.+..+..+|+...+.....-.+-..+.+|+.-...|| +-...+|+.|...|..+.. ..|++.|+.
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~ 649 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVM 649 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHH
Confidence 7899999999999999998877632222223444444433333 3445788888888876654 557788888
Q ss_pred HHHHHHHcCc
Q 005003 492 DSIDRIVAGM 501 (720)
Q Consensus 492 ~Al~~v~~~~ 501 (720)
+|+..+....
T Consensus 650 ~Ai~em~~~~ 659 (767)
T KOG1514|consen 650 EAINEMLASP 659 (767)
T ss_pred HHHHHHhhhh
Confidence 8887765443
No 226
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.66 E-value=1.1e-07 Score=102.76 Aligned_cols=101 Identities=25% Similarity=0.304 Sum_probs=67.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhh-chHHHHHHHHHHHhcCCeEEEEccchhcccc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 364 (720)
..+|++|+||||||||+||.|+|+++ |.++.+++.++|+..+... ......+.++..+ ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35799999999999999999999987 7899999999887654322 1112334444443 34699999997641
Q ss_pred cCCCCCCCChHHH-HHHHHHHhh-hcCccCCCcEEEEEEeCCC
Q 005003 365 RGTGIGGGNDERE-QTLNQLLTE-MDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 365 r~~~~~~~~~e~~-~~ln~LL~~-ldg~~~~~~ViVIaaTN~p 405 (720)
.+++.. .++..++.. +. .+.-.|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 123332 344555442 22 234678888863
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.64 E-value=1.9e-07 Score=108.63 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=128.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechhhHHHHhhhch--H--------HHHHHHHHHHhcCCeEEEEccc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA--S--------RVRDLFKKAKENAPCIVFVDEI 358 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~~~~~~~G~~~--~--------~vr~lF~~A~~~~P~ILfIDEI 358 (720)
.||+|.|++|||||+++++++.-+. .||..+..+--.+..+|... . .-..++..|. ..|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 4899999999999999999999874 58887766554555555431 0 0112233222 259999999
Q ss_pred hhcccccCCCCCCCChHHHHHHHHHHhhhcCc-----------cCCCcEEEEEEeCCC---CccchhhcCCCcccceeee
Q 005003 359 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTV 424 (720)
Q Consensus 359 D~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~-----------~~~~~ViVIaaTN~p---~~LD~ALlrpgRFdr~I~i 424 (720)
..+ ...++..|++-|+.- .....+++|++-|.. ..|+++++. ||+.++.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 887 234777777777532 123468889975432 458999999 99999999
Q ss_pred cCCCHHHH-------HHHHHH--hhcCCCCcccccHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 005003 425 DVPDIRGR-------TEILKV--HGSNKKFDADVSLDVIAMR--TPGF-SGADLANLLNEAAILAGRRGKAAISSKEIDD 492 (720)
Q Consensus 425 ~~Pd~~eR-------~~IL~~--~l~~~~l~~dvdl~~LA~~--t~G~-SgadL~~lv~eAa~~A~r~~~~~It~~dl~~ 492 (720)
+.|+..+. .+|.+. .+.+..+... .+..++.. ..|. |.+--..+++-|..+|..+|+..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 98875542 123322 2233333222 12332221 2455 7777788999999999999999999999999
Q ss_pred HHHHHHc
Q 005003 493 SIDRIVA 499 (720)
Q Consensus 493 Al~~v~~ 499 (720)
|+.-++.
T Consensus 246 Aa~lvL~ 252 (584)
T PRK13406 246 AARLVLA 252 (584)
T ss_pred HHHHHHH
Confidence 9987763
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=5.8e-07 Score=97.48 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=100.3
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCE--E--EEechhhHH-------HHh-------h------hchHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF--F--SISGSEFVE-------MFV-------G------VGASRVRDLFK 343 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf--~--~vs~s~~~~-------~~~-------G------~~~~~vr~lF~ 343 (720)
+.|..+||+||+|+||+++|.++|..+-+.- - ...|..+.. .++ | .+...+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 5677899999999999999999998663310 0 011111110 000 1 12445677666
Q ss_pred HHHhc----CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 005003 344 KAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419 (720)
Q Consensus 344 ~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFd 419 (720)
.+... .-.|++||++|.+ .....|.||+-++. +..++++|..|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 55332 2369999999998 24467889998885 45577888889999999999999 775
Q ss_pred ceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcH
Q 005003 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463 (720)
Q Consensus 420 r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~Sg 463 (720)
.+.++.|+.++-.+.+... ..+ ..+...++..+.|..+
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 7889999988877777643 122 1123345555655433
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.63 E-value=4.2e-07 Score=104.41 Aligned_cols=212 Identities=18% Similarity=0.211 Sum_probs=122.8
Q ss_pred ccccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 243 ~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
....|.++..+.+.+||+-...-.++++..++....+ ....+-+||+||||||||++++.+|++++..+..-.
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 4567889999999999999988777777777643221 222346888999999999999999999987766542
Q ss_pred -chhhH------HHHhhhc------hHH---HHHH-HHHHHh-----------cCCeEEEEccchhcccccCCCCCCCCh
Q 005003 323 -GSEFV------EMFVGVG------ASR---VRDL-FKKAKE-----------NAPCIVFVDEIDAVGRQRGTGIGGGND 374 (720)
Q Consensus 323 -~s~~~------~~~~G~~------~~~---vr~l-F~~A~~-----------~~P~ILfIDEID~l~~~r~~~~~~~~~ 374 (720)
...+. ..+.+.. ..+ ..++ +..++. ..+.||+|||+-.+... ...
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHH
Confidence 22211 1111110 011 1111 111121 24679999999876421 112
Q ss_pred HHHHHHHHHHhhhcCccCCC-cEEEEEE-eC------CC--------CccchhhcCCCcccceeeecCCCHHHHHHHHHH
Q 005003 375 EREQTLNQLLTEMDGFEGNT-GIIVIAA-TN------RA--------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 438 (720)
Q Consensus 375 e~~~~ln~LL~~ldg~~~~~-~ViVIaa-TN------~p--------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~ 438 (720)
.....+.+++.. ... .+|+|.+ ++ .. ..+++.++...++. +|.|.+-...-.++-|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHH
Confidence 333344444331 122 5666666 11 11 13566666543454 788877666555444443
Q ss_pred hhcCC--------CCccccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 439 HGSNK--------KFDADVS-LDVIAMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 439 ~l~~~--------~l~~dvd-l~~LA~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
.+... ......+ ++.|+..+. +||+.+++.-...+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 33211 1111222 667776544 599999999888886
No 230
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=6e-07 Score=97.54 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=95.0
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHHHhhhchHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 343 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~p------------------------f~~vs~s~~~~~~~G~~~~~vr~lF~ 343 (720)
+.|.++||+||+|+||+++|+++|..+-+. |+.+...+ . ...+...+|++-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHHH
Confidence 557789999999999999999999976431 11111100 0 0124556777666
Q ss_pred HHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 005003 344 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419 (720)
Q Consensus 344 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFd 419 (720)
.+.. ....|++||++|.+ .....|.||+.++. +..++++|.+|+.++.+.|.+++ |..
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL--------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce
Confidence 5532 33469999999998 24577889999984 56678999999999999999999 774
Q ss_pred ceeeecCCCHHHHHHHHHHh
Q 005003 420 RQVTVDVPDIRGRTEILKVH 439 (720)
Q Consensus 420 r~I~i~~Pd~~eR~~IL~~~ 439 (720)
.+.+++|+.++..+.+...
T Consensus 160 -~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHH
Confidence 7889999998888777765
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=4.3e-07 Score=99.23 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=102.0
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHHHhhhchHHHHHHH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLF 342 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~p------------------------f~~vs~s~~~~~~~G~~~~~vr~lF 342 (720)
.+.|..+||+||+|+||+++|+++|..+-+. +..+.... .-...+...+|++-
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---GKSSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---ccccCCHHHHHHHH
Confidence 3567799999999999999999999876331 11111100 00012345677766
Q ss_pred HHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcc
Q 005003 343 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418 (720)
Q Consensus 343 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRF 418 (720)
+.+.. ....|++||++|.+ ..+..|.||+.++. +..+.++|..|+.++.|.|.+++ |.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc
Confidence 65532 33469999999998 24577899999984 56788999999999999999999 77
Q ss_pred cceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCC
Q 005003 419 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 461 (720)
Q Consensus 419 dr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~ 461 (720)
. .+.++.|+.++..+.+.... ..+. .+...+++.+.|-
T Consensus 160 q-~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G~ 197 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAGA 197 (334)
T ss_pred c-cccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCCC
Confidence 6 67999999888777775431 2221 1234455555553
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=98.60 E-value=2.9e-07 Score=97.08 Aligned_cols=100 Identities=23% Similarity=0.358 Sum_probs=64.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHHHhhh-chHHHHHHHHHHHhcCCeEEEEccchhcccccC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 366 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 366 (720)
.+++|+||||||||+||.+++.+ .|..+.++++.++...+... ....+...+... ...+++++|||++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~---- 177 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP---- 177 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC----
Confidence 47999999999999999999765 47788889988887554321 112244455443 2456799999998752
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 367 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 367 ~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
.+.+....+.+++....+ +. -+|.|||.+
T Consensus 178 -----~~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 178 -----FSQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -----CChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 122333345555544321 22 256678863
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.59 E-value=4e-07 Score=95.85 Aligned_cols=70 Identities=26% Similarity=0.474 Sum_probs=50.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhhchH-HHHHHHHH-HHhcCCeEEEEccchhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGAS-RVRDLFKK-AKENAPCIVFVDEIDAV 361 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~~~~-~vr~lF~~-A~~~~P~ILfIDEID~l 361 (720)
+.+++|+||||||||+||-|+++++ |.++++++..+++......-.. ....-+.. . ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4489999999999999999998876 8999999999998764332111 11111222 2 23469999999775
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.57 E-value=5.4e-07 Score=91.14 Aligned_cols=182 Identities=23% Similarity=0.294 Sum_probs=93.3
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC---CEEEEec-hhh----HHHH-
Q 005003 260 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SEF----VEMF- 330 (720)
Q Consensus 260 ~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~---pf~~vs~-s~~----~~~~- 330 (720)
+|.++..+.|.+.+..- ....++|+||+|+|||+|++.+.....- ..++++. ... ...+
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 45666666666555421 1237999999999999999999998732 2222221 100 0000
Q ss_pred ------------h-----------------hhchHHHHHHHHHHHhcC-CeEEEEccchhcc-cccCCCCCCCChHHHHH
Q 005003 331 ------------V-----------------GVGASRVRDLFKKAKENA-PCIVFVDEIDAVG-RQRGTGIGGGNDEREQT 379 (720)
Q Consensus 331 ------------~-----------------G~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~-~~r~~~~~~~~~e~~~~ 379 (720)
. ......+..+++...+.. ..||+|||++.+. .. .+....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~---------~~~~~~ 140 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS---------EEDKDF 140 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT---------TTTHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc---------cchHHH
Confidence 0 112334556666665433 4899999999995 11 122344
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCcc------chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC-CC-cccccH
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADIL------DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-KF-DADVSL 451 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~L------D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~-~l-~~dvdl 451 (720)
+..+...++......++.+|.++...... ...+.. |+.. +.+++-+.++..++++...... .+ ..+.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 44555555543344455444444332211 122333 6765 8999999999999999876655 11 244557
Q ss_pred HHHHHhCCCCcHHHH
Q 005003 452 DVIAMRTPGFSGADL 466 (720)
Q Consensus 452 ~~LA~~t~G~SgadL 466 (720)
+.+...+.|. |+-|
T Consensus 218 ~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 218 EEIYSLTGGN-PRYL 231 (234)
T ss_dssp HHHHHHHTT--HHHH
T ss_pred HHHHHHhCCC-HHHH
Confidence 7777777764 4444
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.55 E-value=2.8e-06 Score=88.74 Aligned_cols=228 Identities=17% Similarity=0.189 Sum_probs=141.6
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---CCEEE--
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFS-- 320 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~-- 320 (720)
+|.++..+-+++.+.+.++....++.+...-..| ++++|||+|+||-|.+.++-+++. ++=..
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 3566777889999999999998888777522223 699999999999999999988762 21111
Q ss_pred ----------------EechhhHH---HHhhhch-HHHHHHHHHHHhcCC---------eEEEEccchhcccccCCCCCC
Q 005003 321 ----------------ISGSEFVE---MFVGVGA-SRVRDLFKKAKENAP---------CIVFVDEIDAVGRQRGTGIGG 371 (720)
Q Consensus 321 ----------------vs~s~~~~---~~~G~~~-~~vr~lF~~A~~~~P---------~ILfIDEID~l~~~r~~~~~~ 371 (720)
++....++ .-.|.-. --++++.++..+..| .+++|.|.|.+-+
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-------- 141 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-------- 141 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH--------
Confidence 11111111 0012111 235566666544332 5888999999932
Q ss_pred CChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc-cc
Q 005003 372 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VS 450 (720)
Q Consensus 372 ~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d-vd 450 (720)
+ ....|-.-|+.+. .++.+|..+|....+-+++++ |.- .|.++.|+.++...++...+.+..+... .-
T Consensus 142 ---d---AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 142 ---D---AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred ---H---HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 2 2334445555443 456777778998889999998 553 6899999999999999888877665433 22
Q ss_pred HHHHHHhCCCCcHHHHHHHH--HHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHHHHHHHhh
Q 005003 451 LDVIAMRTPGFSGADLANLL--NEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 528 (720)
Q Consensus 451 l~~LA~~t~G~SgadL~~lv--~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaGhAvv~~~ 528 (720)
+..++..+.| +++..+ -||.... +.. ........+...|.+.+||.+..++..-
T Consensus 211 l~rIa~kS~~----nLRrAllmlE~~~~~---n~~-----------------~~a~~~~i~~~dWe~~i~e~a~~i~~eQ 266 (351)
T KOG2035|consen 211 LKRIAEKSNR----NLRRALLMLEAVRVN---NEP-----------------FTANSQVIPKPDWEIYIQEIARVILKEQ 266 (351)
T ss_pred HHHHHHHhcc----cHHHHHHHHHHHHhc---ccc-----------------ccccCCCCCCccHHHHHHHHHHHHHhcc
Confidence 5667766654 343322 2222111 100 0111122244568899999999988653
No 236
>PF13173 AAA_14: AAA domain
Probab=98.53 E-value=6e-07 Score=84.26 Aligned_cols=120 Identities=23% Similarity=0.286 Sum_probs=71.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG 368 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 368 (720)
+.++|+||+|+|||++++.++.... -.++++++.+....-.... . +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 3689999999999999999999876 7888888877654221111 0 223333222235689999999997
Q ss_pred CCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch--hhcCCCcccceeeecCCCHHH
Q 005003 369 IGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS--ALLRPGRFDRQVTVDVPDIRG 431 (720)
Q Consensus 369 ~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~--ALlrpgRFdr~I~i~~Pd~~e 431 (720)
+.....+..+...- .++-+|.|+.....+.. +-.-+||.. .+++.+.+..|
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 12445555555421 23344444433222211 112245765 66777766654
No 237
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=2.9e-07 Score=91.82 Aligned_cols=99 Identities=27% Similarity=0.395 Sum_probs=61.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhh-chHHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
..|++|+||||||||+||.+++.++ |.++.+++.+++++.+... ......+.++.... ..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee---
Confidence 4589999999999999999998865 8999999999998765322 11223344554433 3688899986531
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
..++....+.+++..-- .+ + -.|.|||.
T Consensus 122 ------~~~~~~~~l~~ii~~R~---~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 122 ------LSEWEAELLFEIIDERY---ER-K-PTIITSNL 149 (178)
T ss_dssp --------HHHHHCTHHHHHHHH---HT---EEEEEESS
T ss_pred ------ecccccccchhhhhHhh---cc-c-CeEeeCCC
Confidence 23334444445554322 22 2 35558886
No 238
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.48 E-value=2.2e-07 Score=106.28 Aligned_cols=206 Identities=27% Similarity=0.412 Sum_probs=124.9
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHH--hcCCCEEEEechhhHHH-----Hhh
Q 005003 260 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEM-----FVG 332 (720)
Q Consensus 260 ~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~--e~g~pf~~vs~s~~~~~-----~~G 332 (720)
++.+...+.+...++.+..... .+|+.|.|||||-.+||++-. +..-||+.++|..+-+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~----------pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDL----------PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCC----------CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 4666666666666655544432 699999999999999999954 35679999999876543 233
Q ss_pred hc--------hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh-----hcCccCCCcEEEE
Q 005003 333 VG--------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDGFEGNTGIIVI 399 (720)
Q Consensus 333 ~~--------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~-----ldg~~~~~~ViVI 399 (720)
.. .+..+..+++|.. ..+|+|||..+ .-..+.-+.+.|.+ +.+-...-+|.||
T Consensus 386 y~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi 451 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVI 451 (606)
T ss_pred cCccccccchhccccccceecCC---CccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEE
Confidence 21 1222333444433 48999999887 22333344444443 2222223368999
Q ss_pred EEeCCCCccchhhcCCCcccc-------eeeecCCCHHHHHH---HHHHh-hcCC----CCcccccHHHHHHhCCCCcHH
Q 005003 400 AATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE---ILKVH-GSNK----KFDADVSLDVIAMRTPGFSGA 464 (720)
Q Consensus 400 aaTN~p~~LD~ALlrpgRFdr-------~I~i~~Pd~~eR~~---IL~~~-l~~~----~l~~dvdl~~LA~~t~G~Sga 464 (720)
+||+++= ..|.+-|||-. ...|.+|+..+|.+ ++..+ .+.. .++++.-...++...+| +.+
T Consensus 452 ~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nir 527 (606)
T COG3284 452 AATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIR 527 (606)
T ss_pred eccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHH
Confidence 9999742 35666777643 56778899888864 22222 2221 22222212334444554 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 465 DLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
+|.|+++.++.++ ....|...|+...+-.
T Consensus 528 el~~v~~~~~~l~---~~g~~~~~dlp~~l~~ 556 (606)
T COG3284 528 ELDNVIERLAALS---DGGRIRVSDLPPELLE 556 (606)
T ss_pred HHHHHHHHHHHcC---CCCeeEcccCCHHHHh
Confidence 9999999888776 4445666666555543
No 239
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.1e-06 Score=91.84 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=93.7
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCC-----------------------EEEEechhhHHHHhhhchHHHHHHHH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----------------------FFSISGSEFVEMFVGVGASRVRDLFK 343 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~p-----------------------f~~vs~s~~~~~~~G~~~~~vr~lF~ 343 (720)
.+.|.++||+||.|+||+.+|+++|..+-+. |+.+.... .. ...+...+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHH
Confidence 3567789999999999999999999866321 22221110 00 0013345666655
Q ss_pred HHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 005003 344 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419 (720)
Q Consensus 344 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFd 419 (720)
.+.. ....|++||++|.+ .....|.||+.++. +..++++|..|+.++.+-|.+++ |..
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce
Confidence 5432 23469999999998 24577889999985 56678999999999999999999 775
Q ss_pred ceeeecCCCHHHHHHHHHH
Q 005003 420 RQVTVDVPDIRGRTEILKV 438 (720)
Q Consensus 420 r~I~i~~Pd~~eR~~IL~~ 438 (720)
.+.++.|+.++..+.+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 -QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eEeCCCCCHHHHHHHHHH
Confidence 789999998888877765
No 240
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-06 Score=105.36 Aligned_cols=128 Identities=29% Similarity=0.334 Sum_probs=92.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-----
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 328 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~----- 328 (720)
+.|+|++++...+-+.|...+..-. +. +++-.++|.||.|+|||-||+++|... .-.++.+++++|.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4689999999999988876543211 00 355679999999999999999999976 45799999998765
Q ss_pred ----HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC---------CCc
Q 005003 329 ----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTG 395 (720)
Q Consensus 329 ----~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~---------~~~ 395 (720)
.|+|. .....+.+..++...|||+|||||.. + ...+|.|+..+|...- -.+
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA-----------h---~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA-----------H---PDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc-----------C---HHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 12322 23446777777788899999999986 2 3356666666654322 136
Q ss_pred EEEEEEeCC
Q 005003 396 IIVIAATNR 404 (720)
Q Consensus 396 ViVIaaTN~ 404 (720)
+|||.|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 899999986
No 241
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=4.7e-06 Score=92.45 Aligned_cols=205 Identities=21% Similarity=0.225 Sum_probs=130.2
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----C-CCEEEEechhhHH--
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFVE-- 328 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----g-~pf~~vs~s~~~~-- 328 (720)
-..+.|.+..+..+++++..... ..-+.++.+.|-||||||.+...+-... . ...++++|..+.+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45678888888888877764322 2335579999999999999888664332 2 2447888875321
Q ss_pred --------HH----hhhc-hHHHHHHHHHH-Hhc-CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005003 329 --------MF----VGVG-ASRVRDLFKKA-KEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 393 (720)
Q Consensus 329 --------~~----~G~~-~~~vr~lF~~A-~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~ 393 (720)
.+ .+.+ .......|+.- .+. .+-++++||+|.++.+.. .++..+. ++..+ ++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lF-ewp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLF-EWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeeeh-hcccC-Cc
Confidence 11 1111 11222333332 233 378999999999974321 1332222 23322 35
Q ss_pred CcEEEEEEeCCCCccchhhcC----CCcccceeeecCCCHHHHHHHHHHhhcCCCCccc--ccHHHHHHhCCCCcHHHHH
Q 005003 394 TGIIVIAATNRADILDSALLR----PGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD--VSLDVIAMRTPGFSGADLA 467 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlr----pgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d--vdl~~LA~~t~G~SgadL~ 467 (720)
..+++|+..|..|.-|..|-| .+.--..+.|++++.++..+|++..+........ ..++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 679999999998866655543 1122348899999999999999999887665433 347778888888887 555
Q ss_pred ---HHHHHHHHHHHHhCC
Q 005003 468 ---NLLNEAAILAGRRGK 482 (720)
Q Consensus 468 ---~lv~eAa~~A~r~~~ 482 (720)
.+|+.|..+|....+
T Consensus 367 kaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKR 384 (529)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666655443
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=1.3e-06 Score=92.62 Aligned_cols=68 Identities=25% Similarity=0.355 Sum_probs=47.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~ 360 (720)
..+++|+||||||||+|+.|+|+++ +..+++++..++...+... .......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 4589999999999999999999975 6788899887776543221 11122223332 2357999999954
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.3e-06 Score=95.17 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=90.7
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCC-------------------------EEEEechhhHHHHhh-----hchHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------------------------FFSISGSEFVEMFVG-----VGASR 337 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~p-------------------------f~~vs~s~~~~~~~G-----~~~~~ 337 (720)
+.|.++||+||+|+|||++|+++|+.+.+. |++++...-. .-.| .+...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 678899999999999999999999976431 2223221000 0001 23456
Q ss_pred HHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhc
Q 005003 338 VRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL 413 (720)
Q Consensus 338 vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALl 413 (720)
+|++.+.+.. ....|++||++|.+ + .+..|.++..++... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d---~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------N---LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------C---HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 7887777643 23469999999998 2 234566666666543 34667778898999999999
Q ss_pred CCCcccceeeecCCCHHHHHHHHHH
Q 005003 414 RPGRFDRQVTVDVPDIRGRTEILKV 438 (720)
Q Consensus 414 rpgRFdr~I~i~~Pd~~eR~~IL~~ 438 (720)
+ |. ..+.+++|+.++..+.+..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 66 4788999998887777754
No 244
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.37 E-value=1e-06 Score=97.14 Aligned_cols=140 Identities=19% Similarity=0.275 Sum_probs=82.1
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCC-CEEEEechhhHHHHhhh------chHHHHHHHHHHHhcCCeEEEEccch
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFVEMFVGV------GASRVRDLFKKAKENAPCIVFVDEID 359 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~-pf~~vs~s~~~~~~~G~------~~~~vr~lF~~A~~~~P~ILfIDEID 359 (720)
...|+|++||||+|+|||+|...+...+.. .-..++-.+|....-.. ...-+..+-+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999887754 22233333443221110 1111222222222 223599999987
Q ss_pred hcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC-CCccchhhcCCCcccceeeecCCCHHHHHHHHHH
Q 005003 360 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 438 (720)
Q Consensus 360 ~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~-p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~ 438 (720)
-- +-.....+..|+..+- ..|+++|+|+|+ |+.|- ++.+.+....| -.++|+.
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly-----~~gl~r~~Flp------~I~~l~~ 191 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLY-----KNGLQRERFLP------FIDLLKR 191 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHc-----CCcccHHHHHH------HHHHHHh
Confidence 63 1223345666666653 468999999997 33332 23333322221 1356777
Q ss_pred hhcCCCCcccccHHH
Q 005003 439 HGSNKKFDADVSLDV 453 (720)
Q Consensus 439 ~l~~~~l~~dvdl~~ 453 (720)
++.-..++...|...
T Consensus 192 ~~~vv~ld~~~DyR~ 206 (362)
T PF03969_consen 192 RCDVVELDGGVDYRR 206 (362)
T ss_pred ceEEEEecCCCchhh
Confidence 777777776666654
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=1.3e-06 Score=81.12 Aligned_cols=71 Identities=23% Similarity=0.411 Sum_probs=46.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCEEEEechhhH------HHH---hh------hchHHHHH-HHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGSEFV------EMF---VG------VGASRVRD-LFKKAK 346 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~--------g~pf~~vs~s~~~------~~~---~G------~~~~~vr~-lF~~A~ 346 (720)
+.++++||||+|||++++.++... ..+++.+++.... ... .+ .....+.+ +.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999977 7888888876543 111 01 11222323 333344
Q ss_pred hcCCeEEEEccchhc
Q 005003 347 ENAPCIVFVDEIDAV 361 (720)
Q Consensus 347 ~~~P~ILfIDEID~l 361 (720)
.....+|+|||+|.+
T Consensus 85 ~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 85 RRRVVLLVIDEADHL 99 (131)
T ss_dssp HCTEEEEEEETTHHH
T ss_pred hcCCeEEEEeChHhc
Confidence 444459999999998
No 246
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.29 E-value=1.8e-06 Score=101.13 Aligned_cols=221 Identities=25% Similarity=0.312 Sum_probs=124.1
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhcc--CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE-echhhHHHHhh
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIG--ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVG 332 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g--~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v-s~s~~~~~~~G 332 (720)
.-.|.|.+.+|+.+.= ..+.-..+...-| .+-.-+|||.|.||||||.|.+.+++-+-..++.- .++. -+|
T Consensus 285 aPsIyG~e~VKkAilL--qLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILL--QLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHHH--HhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 3456777777765432 2222222211111 22234799999999999999999998875544432 1111 123
Q ss_pred hchHHHHHHH--H---HH---HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CC
Q 005003 333 VGASRVRDLF--K---KA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GN 393 (720)
Q Consensus 333 ~~~~~vr~lF--~---~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~ 393 (720)
-++..+++-+ + .| .-..+.|.+|||+|.+- ++ -.+.+.+.|+... -+
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~-----------~~---dr~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN-----------EE---DRVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC-----------hH---HHHHHHHHHHhcEeeecccceeeecc
Confidence 3333333322 0 11 01235799999999982 22 2234444454321 12
Q ss_pred CcEEEEEEeCCCC-------------ccchhhcCCCcccceeee-cCCCHHHHH----HHHHHhhcCCC-----------
Q 005003 394 TGIIVIAATNRAD-------------ILDSALLRPGRFDRQVTV-DVPDIRGRT----EILKVHGSNKK----------- 444 (720)
Q Consensus 394 ~~ViVIaaTN~p~-------------~LD~ALlrpgRFdr~I~i-~~Pd~~eR~----~IL~~~l~~~~----------- 444 (720)
...-|+||+|... .|+++|++ |||..+.+ +.||.+.=. .++..|.....
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 2356788888643 57889999 99975433 566654322 34444421110
Q ss_pred -------------------Cccccc---HHHHH-----H----------hCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 005003 445 -------------------FDADVS---LDVIA-----M----------RTPGFSGADLANLLNEAAILAGRRGKAAISS 487 (720)
Q Consensus 445 -------------------l~~dvd---l~~LA-----~----------~t~G~SgadL~~lv~eAa~~A~r~~~~~It~ 487 (720)
..+-+. .+.|. . .+...|.++|+.+++-|-..|.-+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 001100 11111 0 1123678899999999999998888889999
Q ss_pred HHHHHHHHHHH
Q 005003 488 KEIDDSIDRIV 498 (720)
Q Consensus 488 ~dl~~Al~~v~ 498 (720)
+|+++|+.-+.
T Consensus 583 eD~~eAi~lv~ 593 (682)
T COG1241 583 EDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHH
Confidence 99999887553
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=3.9e-06 Score=79.87 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=64.0
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh----------------------hh-ch-HHHHHHHHHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV----------------------GV-GA-SRVRDLFKKA 345 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~----------------------G~-~~-~~vr~lF~~A 345 (720)
++|+||||+|||++++.++..+ +.++++++......... .. .. ...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 57788877654332110 00 00 1111234445
Q ss_pred HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 346 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
....|.+++|||+..+.........+......+.+..++..+. ..++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6677899999999998643211001112223344444444433 34566666666543
No 248
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.25 E-value=9.6e-07 Score=79.50 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCCeE--------EEEEecCcccCCce
Q 005003 91 LKKLVGNVGVGTALLGSG-KAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI--------AIVEAISPELGNRV 161 (720)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~ 161 (720)
++|++++++++++++.+. .. ...+..+++||+|+++|++|+|++|.+.++... ..............
T Consensus 2 ~~~ili~~vi~~l~~~~~~~~----~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (110)
T PF06480_consen 2 ILYILIILVILLLFNFFFFNS----NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYT 77 (110)
T ss_dssp -----------------S----------SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT
T ss_pred cceehhHHHHHHHHHHHHhhc----ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccE
Confidence 567777777777665553 21 234677999999999999999999999866544 11111111111122
Q ss_pred eEEEEEcCC---CcHHHHHHHHhcCcceeecc
Q 005003 162 QRVRVQLPG---LSQELLQKFREKNIDFAAHN 190 (720)
Q Consensus 162 ~~~~~~~~~---~~~~~~~~l~~~~v~~~~~~ 190 (720)
.......+. ..+.+.+.+.++|+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~~ 109 (110)
T PF06480_consen 78 TFYTPSIPSVDSFDEFLIEALVEKGVKYESVP 109 (110)
T ss_dssp --EEEE-S-HHHHHHHHHHHHHHTT--TTT--
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHCCCccceec
Confidence 222223221 23457777788888776543
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.24 E-value=4.3e-06 Score=88.89 Aligned_cols=164 Identities=20% Similarity=0.335 Sum_probs=82.7
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-C--EEEEechhhHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-P--FFSISGSEFVEM 329 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-p--f~~vs~s~~~~~ 329 (720)
++.|.++.=.-..-.....+++.+-.. .+++||+||+|||||.+++..-.+..- . ...++++....
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt- 74 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSN----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT- 74 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHC----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHc----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-
Confidence 455666555444444455555543222 238999999999999999988765532 2 23344443221
Q ss_pred HhhhchHHHHHHHHHH-----------HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC-----
Q 005003 330 FVGVGASRVRDLFKKA-----------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----- 393 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A-----------~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~----- 393 (720)
...++.+.+.. .....+|+||||+..-....- +.....+.+.|++.. .|+-..
T Consensus 75 -----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~y-----gtq~~iElLRQ~i~~-~g~yd~~~~~~ 143 (272)
T PF12775_consen 75 -----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKY-----GTQPPIELLRQLIDY-GGFYDRKKLEW 143 (272)
T ss_dssp -----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TT-----S--HHHHHHHHHHHC-SEEECTTTTEE
T ss_pred -----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCC-----CCcCHHHHHHHHHHh-cCcccCCCcEE
Confidence 12222222111 112348999999987632210 111122344444432 122221
Q ss_pred ---CcEEEEEEeCCCC---ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 394 ---TGIIVIAATNRAD---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 394 ---~~ViVIaaTN~p~---~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
.++.+|||.|.+. .+++.++| .|. .+.++.|+.+....|+...+.
T Consensus 144 ~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 144 KSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE----TCCHHHHHHHHHHH
T ss_pred EEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCChHHHHHHHHHHHh
Confidence 3588899988643 47888888 664 889999999998887766543
No 250
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.23 E-value=8.8e-06 Score=92.82 Aligned_cols=222 Identities=17% Similarity=0.218 Sum_probs=126.4
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhh--ccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTA--IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~--~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G 332 (720)
-|-.|.|.+.+|.-+.- ..+..-.++.. ..++-.-+|++.|.||||||-+.++.++-+-..++ +++..- .-.|
T Consensus 343 l~PsIyGhe~VK~GilL--~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaS--SaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILL--SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKAS--SAAG 417 (764)
T ss_pred hCccccchHHHHhhHHH--HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccc--cccc
Confidence 36788999999986542 22222222222 22333457999999999999999999987655443 222110 0011
Q ss_pred hchHHHHHH--HHHHH------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CC
Q 005003 333 VGASRVRDL--FKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GN 393 (720)
Q Consensus 333 ~~~~~vr~l--F~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~ 393 (720)
-++.-+++- ++.+. -....|-+|||+|.+..+ .+ ..+++.|+.-. -+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-----------dq---vAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-----------DQ---VAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH-----------hH---HHHHHHHHhheehheecceEEeec
Confidence 111111110 00000 012358899999998321 11 23444454311 12
Q ss_pred CcEEEEEEeCCCC-------------ccchhhcCCCcccc-eeeecCCCHHHHHHHHHHhhcCCCC--------------
Q 005003 394 TGIIVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKKF-------------- 445 (720)
Q Consensus 394 ~~ViVIaaTN~p~-------------~LD~ALlrpgRFdr-~I~i~~Pd~~eR~~IL~~~l~~~~l-------------- 445 (720)
...-||||+|+.. .+++++++ |||. -|-++-|+...-..|-++.+.....
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 2345788888633 57899999 9997 3456777766554444332211100
Q ss_pred ------------ccccc---HHHH---------------HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 446 ------------DADVS---LDVI---------------AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 446 ------------~~dvd---l~~L---------------A~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
.+-+. -+.+ .+.+.+.|.++|+.+++-+-.+|+-.-++.||.+|+++|.+
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 00000 0001 01134678899999999888888888888999999999886
Q ss_pred HH
Q 005003 496 RI 497 (720)
Q Consensus 496 ~v 497 (720)
-+
T Consensus 642 Ll 643 (764)
T KOG0480|consen 642 LL 643 (764)
T ss_pred HH
Confidence 54
No 251
>PF05729 NACHT: NACHT domain
Probab=98.22 E-value=1.7e-05 Score=76.09 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=73.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc------C--CC-EEEEechhhHHH---------H---hhhchHHHHH-HHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA------G--VP-FFSISGSEFVEM---------F---VGVGASRVRD-LFKKAKENA 349 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~------g--~p-f~~vs~s~~~~~---------~---~G~~~~~vr~-lF~~A~~~~ 349 (720)
-++|+|+||+|||++++.++... + .+ ++++++.+.... . .......... +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999998754 1 12 234444333221 0 1111111222 122334566
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC--CCccchhhcCCCcccceeeecCC
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR--ADILDSALLRPGRFDRQVTVDVP 427 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~--p~~LD~ALlrpgRFdr~I~i~~P 427 (720)
+++|+||.+|.+...... .........+.+++.. ....++.+|.++.. ...+...+.. . ..+.+..-
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCC
Confidence 789999999999542211 0001122223333332 11233444444432 1122222222 1 46788888
Q ss_pred CHHHHHHHHHHhhcC
Q 005003 428 DIRGRTEILKVHGSN 442 (720)
Q Consensus 428 d~~eR~~IL~~~l~~ 442 (720)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999888754
No 252
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.20 E-value=6.3e-07 Score=97.84 Aligned_cols=218 Identities=23% Similarity=0.281 Sum_probs=110.5
Q ss_pred cccccchHHHHHHHH-HHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhch
Q 005003 257 DDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 335 (720)
Q Consensus 257 ~dI~G~de~k~eL~e-iv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~ 335 (720)
-+|.|.+.+|..+.= ++........ .....+-.-++||.|.||||||.|.+.++.-+...+ ++++..-.. .|-++
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~--~gLta 99 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSA--AGLTA 99 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTC--CCCCE
T ss_pred CcCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCccc--CCccc
Confidence 357788888775431 1111110000 000122334799999999999999998866543333 333322110 00000
Q ss_pred H----------HH-HHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CC
Q 005003 336 S----------RV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GN 393 (720)
Q Consensus 336 ~----------~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~ 393 (720)
. .+ -..+-.| ...|++|||+|.+- +. ....|++.|+.-. -+
T Consensus 100 ~~~~d~~~~~~~leaGalvla---d~GiccIDe~dk~~-----------~~---~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 100 SVSRDPVTGEWVLEAGALVLA---DGGICCIDEFDKMK-----------ED---DRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp EECCCGGTSSECEEE-HHHHC---TTSEEEECTTTT-------------CH---HHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eeccccccceeEEeCCchhcc---cCceeeeccccccc-----------ch---HHHHHHHHHHcCeeccchhhhccccc
Confidence 0 00 0122233 23699999999982 11 2344555554311 12
Q ss_pred CcEEEEEEeCCCC-------------ccchhhcCCCcccceeee-cCCCHHHHHHHHHHhhcCCC---------------
Q 005003 394 TGIIVIAATNRAD-------------ILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNKK--------------- 444 (720)
Q Consensus 394 ~~ViVIaaTN~p~-------------~LD~ALlrpgRFdr~I~i-~~Pd~~eR~~IL~~~l~~~~--------------- 444 (720)
...-|+||+|... .+++.|++ |||..+.+ +.|+.+.-..+.++.+....
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 3578999999644 47889999 99986554 66775544444443322211
Q ss_pred -Ccccc-------------------cHHHHHH-------------hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 445 -FDADV-------------------SLDVIAM-------------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 445 -l~~dv-------------------dl~~LA~-------------~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
+..+. ..+.|.. .....|.+.|+.+++-|...|.-+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 11000 0111111 11235677889999999999999999999999999
Q ss_pred HHHHHH
Q 005003 492 DSIDRI 497 (720)
Q Consensus 492 ~Al~~v 497 (720)
.|+.-+
T Consensus 321 ~Ai~L~ 326 (331)
T PF00493_consen 321 EAIRLF 326 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 253
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.18 E-value=4.4e-05 Score=86.24 Aligned_cols=210 Identities=15% Similarity=0.220 Sum_probs=112.8
Q ss_pred cccccccCCCCCccccccchHHHHHHHHHHHHh--cCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 244 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL--KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 244 ~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l--~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
...|.++..+-+.++++-...-..++++.+..+ ..|. +| .+-+||+||+|||||+.++.+++++|+.+..-
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 356788888999999988766555555554421 1221 11 23588999999999999999999999877755
Q ss_pred ec-------h------hhHHHHhhhchHHHHHHHHHHH------------hcCCeEEEEccchhcccccCCCCCCCChHH
Q 005003 322 SG-------S------EFVEMFVGVGASRVRDLFKKAK------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDER 376 (720)
Q Consensus 322 s~-------s------~~~~~~~G~~~~~vr~lF~~A~------------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~ 376 (720)
+- . .+..................+. ...|.+|+|||+-..... + .
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d--~ 211 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------D--D 211 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------h--h
Confidence 41 1 1111111111111222222221 134679999999776422 1 1
Q ss_pred HHHHHHHHhhhcCccCCCcEEEEEEeC--CCCccchhhcC------CCcccceeeecCCCHHHHHHHHHHhhcCCC----
Q 005003 377 EQTLNQLLTEMDGFEGNTGIIVIAATN--RADILDSALLR------PGRFDRQVTVDVPDIRGRTEILKVHGSNKK---- 444 (720)
Q Consensus 377 ~~~ln~LL~~ldg~~~~~~ViVIaaTN--~p~~LD~ALlr------pgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~---- 444 (720)
...+...|.++-.... -. +|++.|+ .++..++..+. ..|++ .|.|.+-...--++.|+..++...
T Consensus 212 ~~~f~evL~~y~s~g~-~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s 288 (634)
T KOG1970|consen 212 SETFREVLRLYVSIGR-CP-LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKS 288 (634)
T ss_pred HHHHHHHHHHHHhcCC-Cc-EEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhccccc
Confidence 2223333332221111 12 3333343 33333332222 12554 677776666655565555443211
Q ss_pred ---CcccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 445 ---FDADVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 445 ---l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
......++.++.. +++||+.+++...+.+
T Consensus 289 ~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 289 GIKVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred CCcCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 1223334555544 3459999999988886
No 254
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.18 E-value=3.3e-05 Score=88.92 Aligned_cols=156 Identities=26% Similarity=0.313 Sum_probs=81.0
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhcc-CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchH
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 336 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g-~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~ 336 (720)
.|.|.|.+|.-+.=.+--- ..+.+...| .+-.-+|||+|.||||||.+.+.+++-+..-.+ .|+-. +.-+|.++.
T Consensus 430 sIye~edvKkglLLqLfGG-t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG-TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcC-CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceee
Confidence 4556666666443222111 111222222 233347999999999999999999886644332 22210 000111111
Q ss_pred H-----HHHHHHHH---HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc------Cc--cCCCcEEEEE
Q 005003 337 R-----VRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVIA 400 (720)
Q Consensus 337 ~-----vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld------g~--~~~~~ViVIa 400 (720)
. -+++.-+. --....|-+|||+|.+. +..+.+|.+.+++-. |. .-+...-|+|
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~-----------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS-----------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhhh-----------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 0 11111111 01223588899999982 223334333333210 11 1133456899
Q ss_pred EeCCCC-------------ccchhhcCCCccccee-eecCCCHH
Q 005003 401 ATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIR 430 (720)
Q Consensus 401 aTN~p~-------------~LD~ALlrpgRFdr~I-~i~~Pd~~ 430 (720)
+.|..+ .|+|.|++ |||.++ -++.||..
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 999422 58899999 999743 55777766
No 255
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.16 E-value=2e-05 Score=81.84 Aligned_cols=124 Identities=25% Similarity=0.311 Sum_probs=74.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 371 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 371 (720)
|..++||+|||||..+|++|..+|.+++.++|++-.+. ..+..+|.-+... .+.+++||++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl---------- 96 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL---------- 96 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS----------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh----------
Confidence 77899999999999999999999999999999975542 4566777666443 479999999998
Q ss_pred CChHHHHHHHHHHhhh----cC-----------ccCCCcEEEEEEeCC----CCccchhhcCCCcccceeeecCCCHHHH
Q 005003 372 GNDEREQTLNQLLTEM----DG-----------FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRGR 432 (720)
Q Consensus 372 ~~~e~~~~ln~LL~~l----dg-----------~~~~~~ViVIaaTN~----p~~LD~ALlrpgRFdr~I~i~~Pd~~eR 432 (720)
+.+.-.++.+.+..+ .. ..-+.+.-+..|.|. ...||+.|+. +-|.+.+..||.+..
T Consensus 97 -~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 97 -SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLI 172 (231)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHH
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHH
Confidence 233333333333332 11 011223444455563 3468888876 447999999998755
Q ss_pred HHHH
Q 005003 433 TEIL 436 (720)
Q Consensus 433 ~~IL 436 (720)
.+++
T Consensus 173 ~ei~ 176 (231)
T PF12774_consen 173 AEIL 176 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 256
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.10 E-value=1.2e-05 Score=81.31 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=66.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhH-HHHhhh----------------------chHHHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFV-EMFVGV----------------------GASRVR 339 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~-~~~~G~----------------------~~~~vr 339 (720)
|.+...-++++||||+|||+++..++.+ .+.++++++..++. +.+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 3444456899999999999999998754 36788888886521 111100 011133
Q ss_pred HHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 340 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 340 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
.+.+.+....|++|+||-+.++...... .......+.+..++..|..+....++.+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~---~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELS---DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhC---CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3344445557899999999998542111 011122333444444444444455677776644
No 257
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.10 E-value=1.4e-05 Score=86.48 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=80.6
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCE-EEEechhhHHH-------HhhhchHHHHHHHHHHHhcCCeEEEEccc
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSISGSEFVEM-------FVGVGASRVRDLFKKAKENAPCIVFVDEI 358 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf-~~vs~s~~~~~-------~~G~~~~~vr~lF~~A~~~~P~ILfIDEI 358 (720)
..+|+|+.|||+-|.|||+|...+-..+..+- ..+.-..|... ..|...- +..+-+.. ...-.+|+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP-LPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHH-HhcCCEEEeeee
Confidence 34789999999999999999999988775433 33443444321 2232211 11111111 112259999998
Q ss_pred hhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC-CCccchhhcCCCcccceeeecCCCHHHHHHHHH
Q 005003 359 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 437 (720)
Q Consensus 359 D~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~-p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~ 437 (720)
.-= +-...-++..|+.+|- ..||++++|+|. |+.|-+.=+.++||-.. .++++
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~-----------I~li~ 193 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFLPA-----------IDLIK 193 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhHHH-----------HHHHH
Confidence 542 1122346667777664 458999999997 44443332222333221 25777
Q ss_pred HhhcCCCCcccccHH
Q 005003 438 VHGSNKKFDADVSLD 452 (720)
Q Consensus 438 ~~l~~~~l~~dvdl~ 452 (720)
.++.-..++...|..
T Consensus 194 ~~~~v~~vD~~~DYR 208 (367)
T COG1485 194 SHFEVVNVDGPVDYR 208 (367)
T ss_pred HheEEEEecCCcccc
Confidence 777766666665543
No 258
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.0001 Score=76.72 Aligned_cols=183 Identities=22% Similarity=0.253 Sum_probs=113.4
Q ss_pred EEEEccCCChHHHHHHHHHHhcC---CCEEEEec-----hhhHHHHhhh------------chHHHHHHHHHHHh-cCCe
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-----SEFVEMFVGV------------GASRVRDLFKKAKE-NAPC 351 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~-----s~~~~~~~G~------------~~~~vr~lF~~A~~-~~P~ 351 (720)
+.++|+.|+|||.+.|++....+ +-.++++. +.+.+.++-+ ....-+.+.+..++ ..|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 77899999999999998876653 22334432 2333322211 12222334444433 4568
Q ss_pred EEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCC------Ccccceeeec
Q 005003 352 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP------GRFDRQVTVD 425 (720)
Q Consensus 352 ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrp------gRFdr~I~i~ 425 (720)
++++||.+.+. ......+.-|.+.-++....-.++.|+-.. |.+.+++| -|++-.|+++
T Consensus 134 ~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecC
Confidence 99999999983 222233333333333333334566666432 23322211 1777667888
Q ss_pred CCCHHHHHHHHHHhhcCCCCc----ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 426 VPDIRGRTEILKVHGSNKKFD----ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 426 ~Pd~~eR~~IL~~~l~~~~l~----~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
+.+.++-...++.++...... .+-.+..+...+.| .|.-+.++|..|...|...|+..|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 888887888888887665433 33346677788887 688899999999999999999888876654
No 259
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=5.5e-05 Score=95.44 Aligned_cols=178 Identities=19% Similarity=0.294 Sum_probs=101.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE---EEEech----
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSISGS---- 324 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf---~~vs~s---- 324 (720)
+...+++++|.++..+++.+.+.. +....+-+-|+||+|+||||||+++++....+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 445789999999999888877642 122345689999999999999999988764332 111110
Q ss_pred ---hh--------------HHHHh----hhc---hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHH
Q 005003 325 ---EF--------------VEMFV----GVG---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 380 (720)
Q Consensus 325 ---~~--------------~~~~~----G~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~l 380 (720)
.+ ...+. +.. .... ...+..-...+.+|++|+++.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 00 00000 000 0000 1122222456789999998653 123
Q ss_pred HHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc--c-HHHHHHh
Q 005003 381 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--S-LDVIAMR 457 (720)
Q Consensus 381 n~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv--d-l~~LA~~ 457 (720)
..+....+.+ ..+-.||.||... .+++....++.++++.|+.++..+++..++-+....++. + ...+++.
T Consensus 312 ~~L~~~~~~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 312 DALAGQTQWF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhhCccC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3333333322 2344556666643 333333467789999999999999998887543322110 1 2345666
Q ss_pred CCCCcH
Q 005003 458 TPGFSG 463 (720)
Q Consensus 458 t~G~Sg 463 (720)
+.|..-
T Consensus 385 c~GLPL 390 (1153)
T PLN03210 385 AGNLPL 390 (1153)
T ss_pred hCCCcH
Confidence 666543
No 260
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.99 E-value=5.3e-05 Score=82.87 Aligned_cols=160 Identities=20% Similarity=0.276 Sum_probs=91.1
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCEE---EEechhhHHHH-------h-hhch-----------HHHHHHHHH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISGSEFVEMF-------V-GVGA-----------SRVRDLFKK 344 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~---~vs~s~~~~~~-------~-G~~~-----------~~vr~lF~~ 344 (720)
..+|||++|||.-|||||+|...+-..+.. .. .++..+|.... . ..++ .-+.-+-++
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH
Confidence 456999999999999999999988765422 11 12223332110 0 0000 000001111
Q ss_pred HHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC-CCccchhhcCCCcccceee
Q 005003 345 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVT 423 (720)
Q Consensus 345 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~-p~~LD~ALlrpgRFdr~I~ 423 (720)
.....++|++||+..- +-...-+|+.|...+- +.||+++||+|+ |+.|-..=+. |...
T Consensus 190 -Ia~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F 248 (467)
T KOG2383|consen 190 -IAEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENF 248 (467)
T ss_pred -Hhhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhh
Confidence 1122479999998653 1122346666666553 458999999998 5555443333 2222
Q ss_pred ecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCC-C--Cc-HHHHHHHHHHHH
Q 005003 424 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTP-G--FS-GADLANLLNEAA 474 (720)
Q Consensus 424 i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~-G--~S-gadL~~lv~eAa 474 (720)
+| -..+|+.++.-..+...+|....++... + |. ..|...++++-.
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 22 2367888888888888888884433221 1 23 337777777665
No 261
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.94 E-value=1.6e-05 Score=77.95 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---EEEEechhh
Q 005003 259 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 326 (720)
Q Consensus 259 I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---f~~vs~s~~ 326 (720)
++|.++..+++...+. ... ...++.++|+|++|+|||++.+++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888887777775 222 2235689999999999999999987655322 777766655
No 262
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=6.1e-05 Score=80.62 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=82.0
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH-------H--hh----hchHHHHHHHHHHHh----cCC
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-------F--VG----VGASRVRDLFKKAKE----NAP 350 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~-------~--~G----~~~~~vr~lF~~A~~----~~P 350 (720)
+.|..+||+||+|+||+.+|.++|..+-+.--.-+|..+... . .+ .+...+|++.+.+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 567789999999999999999999977442100112111000 0 11 134456666666532 223
Q ss_pred eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCC
Q 005003 351 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 427 (720)
Q Consensus 351 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~P 427 (720)
.|++||++|.+ ..+..|.||+-++. +..++++|..|+.++.+.|.+++ |.. .+.|+.+
T Consensus 97 kv~ii~~ad~m--------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRM--------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhc--------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 69999999998 24467888988885 56678899999999999999999 664 4555443
No 263
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.93 E-value=2.8e-05 Score=86.72 Aligned_cols=227 Identities=22% Similarity=0.273 Sum_probs=129.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe-chhhHHHHhhhchH
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEFVEMFVGVGAS 336 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs-~s~~~~~~~G~~~~ 336 (720)
+|.|.+++|+.|.-++----+...-..+.++-.-+|+|.|.||+.||-|.+.+.+-+-..++..- +|. -+|-++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccchh
Confidence 78999999998876554322222112233344457999999999999999999887765555431 111 1333444
Q ss_pred HHHHHHHHH---Hh-----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--Ccc--CCCcEEEEEEeCC
Q 005003 337 RVRDLFKKA---KE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE--GNTGIIVIAATNR 404 (720)
Q Consensus 337 ~vr~lF~~A---~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~--~~~~ViVIaaTN~ 404 (720)
-+++-...- .. ....|-+|||+|.+...... ...++..|--..+. |+. -+...-|+||.|.
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt-------AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANP 491 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT-------AIHEVMEQQTISIAKAGINTTLNARTSILAAANP 491 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH-------HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCc
Confidence 333311100 00 11358899999998421100 01111111111111 111 1234678888885
Q ss_pred CC-------------ccchhhcCCCcccce-eeecCCCHHHHHHHHHH----hhcCCCCccc---ccHH------HHHHh
Q 005003 405 AD-------------ILDSALLRPGRFDRQ-VTVDVPDIRGRTEILKV----HGSNKKFDAD---VSLD------VIAMR 457 (720)
Q Consensus 405 p~-------------~LD~ALlrpgRFdr~-I~i~~Pd~~eR~~IL~~----~l~~~~l~~d---vdl~------~LA~~ 457 (720)
.. .|+.||++ |||.. +-.+.||.+.-..+.++ |..+.....+ ++.+ .+++.
T Consensus 492 ayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~ 569 (721)
T KOG0482|consen 492 AYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR 569 (721)
T ss_pred cccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 22 58999999 99973 44567876655554443 2222111100 1100 00110
Q ss_pred -----------------------------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 458 -----------------------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 458 -----------------------------t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
..-.|++-|-.+++.+..+|+.|-...|..+|+++|+.-+
T Consensus 570 ~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 570 KNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 1134778899999999999998988999999999998654
No 264
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=0.00012 Score=77.27 Aligned_cols=172 Identities=19% Similarity=0.294 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh--cCCC---EEEEechh------hHHHH---hhh
Q 005003 268 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP---FFSISGSE------FVEMF---VGV 333 (720)
Q Consensus 268 eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e--~g~p---f~~vs~s~------~~~~~---~G~ 333 (720)
++.++.+.|.... ...+-|.|+|++|+|||+||+.+++. .... ++.++.+. +.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4445555554421 23456999999999999999999987 3222 22333221 11111 111
Q ss_pred ---------chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 334 ---------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 334 ---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
......+.+...-...+++|++|+++... .+..+...+... ..+..||.||..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~ 138 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRD 138 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc----------------cccccccccccc--cccccccccccc
Confidence 11223333334444559999999987751 222222222221 224566667765
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC----CcccccHHHHHHhCCCCcHHHHHHH
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSGADLANL 469 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~LA~~t~G~SgadL~~l 469 (720)
..... ..-. -+..++++..+.++-.+++........ ...+.....+++.+.|. |--|.-+
T Consensus 139 ~~v~~-~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 139 RSVAG-SLGG---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp GGGGT-THHS---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 33221 1111 145788998999999999998876544 11122357888888775 4334333
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.92 E-value=7.7e-05 Score=73.69 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=59.5
Q ss_pred EEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHHHh------hh-----------------------chH----
Q 005003 293 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV-----------------------GAS---- 336 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~~~------G~-----------------------~~~---- 336 (720)
+|++||||||||+++..++.+ .|.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988664 377888887643222110 10 000
Q ss_pred -HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 337 -RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 337 -~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
....+...+....|.+++||++..+... ........+..++..+.. .++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 0133344445667999999999987431 112223344445555432 245556556543
No 266
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.87 E-value=8.1e-05 Score=84.59 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=56.8
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh------hh--------chHHHHHHHHHHHhc
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 348 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~------G~--------~~~~vr~lF~~A~~~ 348 (720)
|.....-++|+|+||+|||+|+..+|... +.++++++..+-.+... |. ....+..+++..++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34444568999999999999999998754 67899998866544321 11 112355666777777
Q ss_pred CCeEEEEccchhccc
Q 005003 349 APCIVFVDEIDAVGR 363 (720)
Q Consensus 349 ~P~ILfIDEID~l~~ 363 (720)
.|.+|+||++..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 899999999999864
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.80 E-value=0.00025 Score=79.12 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh----cCCCEEEEechhhHHHHhhhchHHH
Q 005003 263 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMFVGVGASRV 338 (720)
Q Consensus 263 de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e----~g~pf~~vs~s~~~~~~~G~~~~~v 338 (720)
......|...+.++.... ++++.||||||||+++.+++.. .| -.++.++++.....
T Consensus 193 r~k~~~L~rl~~fve~~~-----------Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------ 252 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNY-----------NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------ 252 (449)
T ss_pred HHHHHHHHhhHHHHhcCC-----------cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH------
Confidence 334445555556665543 7999999999999999999776 24 33444555433211
Q ss_pred HHHHHHHHhcCCeEEEEccchhc
Q 005003 339 RDLFKKAKENAPCIVFVDEIDAV 361 (720)
Q Consensus 339 r~lF~~A~~~~P~ILfIDEID~l 361 (720)
..+... ....+|+|||+..+
T Consensus 253 -~~lg~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 253 -RQIGLV--GRWDVVAFDEVATL 272 (449)
T ss_pred -HHHhhh--ccCCEEEEEcCCCC
Confidence 111111 33579999999886
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00078 Score=72.69 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=88.1
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCC-----------C--EEEEechhhHHHHhhhchHHHHHHHHHHHh-----cC
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSISGSEFVEMFVGVGASRVRDLFKKAKE-----NA 349 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~-----------p--f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~-----~~ 349 (720)
+.+...||+|+.|.||+.+|++++..+-+ | +..++... ...+...++++.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 34557899999999999999999988622 2 22222000 01123456666555522 24
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCH
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~ 429 (720)
..|++||++|.+. ....|.||..++. ++.++++|..|+.++.+-+.+++ |.. .+++.+|+.
T Consensus 91 ~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 5799999998872 3466788888885 45567777777788999999988 664 789999988
Q ss_pred HHHHHHHHH
Q 005003 430 RGRTEILKV 438 (720)
Q Consensus 430 ~eR~~IL~~ 438 (720)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 877766654
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.79 E-value=0.00012 Score=81.35 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=55.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh------hh--------chHHHHHHHHHHHhc
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 348 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~------G~--------~~~~vr~lF~~A~~~ 348 (720)
|+.+..-++|+|+||+|||+++..+|... +.++++++..+-.+... |. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34444568999999999999999998754 46888888754333211 11 122345667777778
Q ss_pred CCeEEEEccchhccc
Q 005003 349 APCIVFVDEIDAVGR 363 (720)
Q Consensus 349 ~P~ILfIDEID~l~~ 363 (720)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999854
No 270
>PHA00729 NTP-binding motif containing protein
Probab=97.78 E-value=8e-05 Score=76.92 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g 315 (720)
.++|+|+||||||++|.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.75 E-value=0.00014 Score=74.64 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=64.0
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH----HHHhhh-------------------chHHHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVR 339 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~----~~~~G~-------------------~~~~vr 339 (720)
|.+...-++++||||+|||+++..+|.+. +.+++++++..+. ....+. ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 44444568999999999999999998744 7888888887221 111110 001112
Q ss_pred HHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 340 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 340 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
.+....+ ..+++|+||-+.++....-.. .....+..+.+.+++..+..+....++.+|.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222122 578999999999886431110 0112223334444444443333345566666543
No 272
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00017 Score=75.80 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=81.1
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEech------hhHH------HH-----hhhchHHHHHHHHHHHh---
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS------EFVE------MF-----VGVGASRVRDLFKKAKE--- 347 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s------~~~~------~~-----~G~~~~~vr~lF~~A~~--- 347 (720)
.+|..+||+||+|+||..+|.++|...-+.=-.-.|. .+.. .+ ..-+...+|++-+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3577899999999999999999998653210000111 1110 00 01234456666554421
Q ss_pred --cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeec
Q 005003 348 --NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425 (720)
Q Consensus 348 --~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~ 425 (720)
....|++||++|.+ .....|.||..++. +..++++|..|+.++.+.|.+++ |.. .+.++
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23479999999998 24577899999884 56778999999999999999999 664 34555
Q ss_pred CC
Q 005003 426 VP 427 (720)
Q Consensus 426 ~P 427 (720)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 44
No 273
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.73 E-value=7e-05 Score=68.33 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.4
Q ss_pred EEEEccCCChHHHHHHHHHHhcC
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g 315 (720)
|+|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 274
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00059 Score=73.25 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=84.3
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEE-------EE-echhhHH------HH---hh--hchHHHHHHHHHHHh-
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------SI-SGSEFVE------MF---VG--VGASRVRDLFKKAKE- 347 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~-------~v-s~s~~~~------~~---~G--~~~~~vr~lF~~A~~- 347 (720)
+.|..+||+|| +||+++|+++|..+-+.-- .+ +|..+.. .+ .| .....+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 55678999996 6899999999986633210 00 1111110 00 01 134567777666543
Q ss_pred ---cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeee
Q 005003 348 ---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 424 (720)
Q Consensus 348 ---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i 424 (720)
....|++||++|.+ .....|.||+.++. +..++++|..|+.++.+-|.+++ |.. .+.|
T Consensus 100 p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM--------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 23369999999998 24567899999985 45668888889989999999999 764 6777
Q ss_pred cCCCHHHHHHHHH
Q 005003 425 DVPDIRGRTEILK 437 (720)
Q Consensus 425 ~~Pd~~eR~~IL~ 437 (720)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 54 4454445554
No 275
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.67 E-value=9.3e-05 Score=76.33 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=41.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh------------hchHHHHHHHHHHH--hcCCeEEE
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG------------VGASRVRDLFKKAK--ENAPCIVF 354 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G------------~~~~~vr~lF~~A~--~~~P~ILf 354 (720)
.|.-+|+||+||+|||++|+.+++. ..++..+++. ..+.| .....+.+.+..+. .....+|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~--~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSS--KVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccc--hhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 3567999999999999999999732 2222222211 00000 11122333333332 23467999
Q ss_pred Eccchhccc
Q 005003 355 VDEIDAVGR 363 (720)
Q Consensus 355 IDEID~l~~ 363 (720)
||.|+.+..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999999854
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00025 Score=73.39 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=31.6
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechh
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 325 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~ 325 (720)
|.+....++++|+||||||+++..++.+ .+.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4555567999999999999999999654 377888887643
No 277
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.64 E-value=0.00017 Score=70.22 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=32.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
++..|+|+|+||||||++|+++|..++.+++. ..++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d--~d~~~~~ 41 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID--TDHLIEA 41 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 45689999999999999999999999998885 4444443
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.64 E-value=0.00029 Score=76.54 Aligned_cols=118 Identities=21% Similarity=0.239 Sum_probs=68.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH----hhh------------chHHHHHHHHHHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV------------GASRVRDLFKKAK 346 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~----~G~------------~~~~vr~lF~~A~ 346 (720)
|.+..+-++|+||||||||+||..++.++ +.++++++..+..+.. .|. .+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 34444568999999999999988875543 6788888765433210 111 1112222223345
Q ss_pred hcCCeEEEEccchhcccccCCC-C-CCC-ChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTG-I-GGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~-~-~~~-~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
...+++|+||-+.++.++..-. . +.. .....+.+.+.+..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999987532111 0 001 1122344456666666555566777777643
No 279
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.63 E-value=0.00018 Score=86.98 Aligned_cols=211 Identities=17% Similarity=0.211 Sum_probs=128.3
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCch--hhhhccCcCC-c-eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPE--RFTAIGARIP-K-GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~--~~~~~g~~~p-r-gVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
..+.+++.+....++.|....-..+.+.++..++++ .|...+.... + .++++||||+|||+.+.++|.+.|..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 456677777888888888777766666555554432 1222211111 1 36999999999999999999999999999
Q ss_pred EechhhHHHHh-----hh--chHHHHHHH---HHHHh-cCC-eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc
Q 005003 321 ISGSEFVEMFV-----GV--GASRVRDLF---KKAKE-NAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 388 (720)
Q Consensus 321 vs~s~~~~~~~-----G~--~~~~vr~lF---~~A~~-~~P-~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld 388 (720)
.+.++..+... +. +...+...| ..... +.. -||++||+|.+.. . +...-..+.++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH---
Confidence 99886654321 11 112223333 11100 112 3899999999853 1 1112233444444
Q ss_pred CccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHH
Q 005003 389 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 467 (720)
Q Consensus 389 g~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~ 467 (720)
....-+|+++|..+......+. |...-++|+.|+...+..-+...+...... .+-.++.+.+.+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2334577888876554443333 433568999999998877666665443322 222366666655 66888
Q ss_pred HHHHHHHHH
Q 005003 468 NLLNEAAIL 476 (720)
Q Consensus 468 ~lv~eAa~~ 476 (720)
+.++.-...
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 888776655
No 280
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.63 E-value=0.0029 Score=67.43 Aligned_cols=125 Identities=23% Similarity=0.233 Sum_probs=75.1
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH------
Q 005003 257 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM------ 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~------ 329 (720)
..+.|+.-+++.+...+.. +.++. .+.|--+=|+|++||||.+.++.||+.....- .-|.++..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~h 152 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLH 152 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhcc
Confidence 3578888888887776654 54443 23355567889999999999999999762211 11233333
Q ss_pred ---------HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhh---hcCccCCCcEE
Q 005003 330 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE---MDGFEGNTGII 397 (720)
Q Consensus 330 ---------~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~---ldg~~~~~~Vi 397 (720)
|-.+-..++ -..+.....+|.++||+|.+ +...-+++.-+|.. .+|.. ..+-|
T Consensus 153 FP~~~~ie~Yk~eL~~~v---~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~-frkaI 217 (344)
T KOG2170|consen 153 FPHASKIEDYKEELKNRV---RGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVD-FRKAI 217 (344)
T ss_pred CCChHHHHHHHHHHHHHH---HHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhcccccccccc-ccceE
Confidence 222222333 33445566789999999998 33344444444442 22222 23467
Q ss_pred EEEEeCCC
Q 005003 398 VIAATNRA 405 (720)
Q Consensus 398 VIaaTN~p 405 (720)
+|.-+|.-
T Consensus 218 FIfLSN~g 225 (344)
T KOG2170|consen 218 FIFLSNAG 225 (344)
T ss_pred EEEEcCCc
Confidence 77777753
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.60 E-value=0.00043 Score=71.87 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHHHh------hh------------------------
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV------------------------ 333 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~~~------G~------------------------ 333 (720)
.+...-++++||||||||+++..++.. .|.+.++++..+-.+.+. |.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 333446999999999999997655442 266777777543221110 00
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEccchhcc
Q 005003 334 -GASRVRDLFKKAKENAPCIVFVDEIDAVG 362 (720)
Q Consensus 334 -~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 362 (720)
....+..+.+......|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344445455578999999998864
No 282
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.59 E-value=0.00011 Score=73.96 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=60.9
Q ss_pred EEEEccCCChHHHHHHHH-HH---hcCCCEEEEechhhH-HHHhh---hchH-------------HHHHHHHHHHhcCCe
Q 005003 293 VLLVGPPGTGKTLLAKAI-AG---EAGVPFFSISGSEFV-EMFVG---VGAS-------------RVRDLFKKAKENAPC 351 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAl-A~---e~g~pf~~vs~s~~~-~~~~G---~~~~-------------~vr~lF~~A~~~~P~ 351 (720)
.+++|.||+|||+.|-.. .. ..|.+++. +...+. +.+.. .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988655 33 33777765 543222 11100 0000 001111111112468
Q ss_pred EEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCC
Q 005003 352 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 428 (720)
Q Consensus 352 ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd 428 (720)
+|+|||++.+.+.|... .......+ +.+.+.. ..++-+|.+|..+..+|+.+++ +.+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998876531 11122333 4444332 4567899999999999999987 888777776553
No 283
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.57 E-value=0.00023 Score=87.82 Aligned_cols=135 Identities=32% Similarity=0.400 Sum_probs=93.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH--Hhhh-------chHHHHH-HHHHHHhcCCeEEEEccch
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGV-------GASRVRD-LFKKAKENAPCIVFVDEID 359 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~--~~G~-------~~~~vr~-lF~~A~~~~P~ILfIDEID 359 (720)
.|++||.|.||+|||+|..|+|+..|-.++.++.|+-.+- .+|. ++-+.++ -|-.|.+.. ..+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 4589999999999999999999999999999998765431 1221 2222222 243443332 577899996
Q ss_pred hcccccCCCCCCCChHHHHHHHHHHhhhcC------------ccCCCcEEEEEEeCCCC------ccchhhcCCCcccce
Q 005003 360 AVGRQRGTGIGGGNDEREQTLNQLLTEMDG------------FEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQ 421 (720)
Q Consensus 360 ~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg------------~~~~~~ViVIaaTN~p~------~LD~ALlrpgRFdr~ 421 (720)
-. .+.++..|-.++|. |.-.+++.|.||-|..+ .|+..++. ||. +
T Consensus 1622 La--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-v 1684 (4600)
T COG5271 1622 LA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-V 1684 (4600)
T ss_pred hh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-e
Confidence 64 23344444444442 33456789999998643 68999998 997 7
Q ss_pred eeecCCCHHHHHHHHHHhhcC
Q 005003 422 VTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 422 I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
|.++....++...|.......
T Consensus 1685 V~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1685 VKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EEecccccchHHHHHHhhCCc
Confidence 888888888888887776543
No 284
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.56 E-value=0.00034 Score=71.35 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=62.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH----HHhhh-------------------chHHHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV-------------------GASRVR 339 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~----~~~G~-------------------~~~~vr 339 (720)
|+....-++++|+||+|||+++..+|.+. +.++++++...... ...+. ....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 34444559999999999999999998754 67888887642111 11110 011112
Q ss_pred HHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 340 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 340 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
.+..... ..+++|+||-+..+....... ..........+..++..|..+....++.||.+...
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGD-DDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcC-ccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 2222222 348899999999985321110 00111222233344444444434456677766543
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=0.00013 Score=71.98 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=30.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
-|+++||||+||||+|+.|++.++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999999987753
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.0005 Score=67.12 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=22.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+.-++++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999865
No 287
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00018 Score=74.82 Aligned_cols=27 Identities=44% Similarity=0.817 Sum_probs=22.5
Q ss_pred cCcCCce--EEEEccCCChHHHHHHHHHH
Q 005003 286 GARIPKG--VLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 286 g~~~prg--VLL~GPPGTGKT~LArAlA~ 312 (720)
....++| |-|.||+|||||||.+.+|+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444444 88999999999999999998
No 288
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.0004 Score=70.50 Aligned_cols=104 Identities=26% Similarity=0.411 Sum_probs=60.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHh-----cCCCE-------------EEEechhhHH----HHhhhchHHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE-----AGVPF-------------FSISGSEFVE----MFVGVGASRVRDLFKKAKEN 348 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e-----~g~pf-------------~~vs~s~~~~----~~~G~~~~~vr~lF~~A~~~ 348 (720)
+-++|.||+|+|||++.|.++.. .|.++ ...+..+-.. .+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 46899999999999999999853 34432 1111111110 11 11224567777776555
Q ss_pred CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 349 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 349 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
.|.++++||.-.-. ...........++..+.. .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 78999999974421 112223334455655531 245677788876644
No 289
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.52 E-value=0.00041 Score=79.30 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=40.9
Q ss_pred ccccchHHHHHHHHHHHH--hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 258 DVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~--l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.|.|.+.+|..+.-.+-- -+++.. +...+-.-+|||+|.||||||-+.|.+++-....++..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 577888888765433321 222221 11122234799999999999999999999887766654
No 290
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.52 E-value=7.1e-05 Score=68.74 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=26.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
|+|.||||+||||+|+.+|+.+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998776443
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.50 E-value=0.00012 Score=84.36 Aligned_cols=63 Identities=22% Similarity=0.459 Sum_probs=44.8
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-CCCEEEEec
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 323 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~ 323 (720)
-|+|+.|++++++.+.+.+..... .++. ..+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~-----gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ-----GLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH-----hcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 588999999999987766522100 0111 12368999999999999999999866 346666544
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00035 Score=77.43 Aligned_cols=111 Identities=19% Similarity=0.364 Sum_probs=64.1
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc----C-CCEEEEechhhH-------HH---Hhhh------chHHHHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFV-------EM---FVGV------GASRVRDLFKKAK 346 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~----g-~pf~~vs~s~~~-------~~---~~G~------~~~~vr~lF~~A~ 346 (720)
.....++|+||+|+|||+++..+|..+ | ..+..+++..+. .. ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 334579999999999999999998753 3 355555554431 11 1121 111222333322
Q ss_pred hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-CCcEEEEEEeCCCCccchhhc
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALL 413 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-~~~ViVIaaTN~p~~LD~ALl 413 (720)
...++|+||.....- ....+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 -~~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred -cCCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 345789998874321 12234445555544332 245788888888877765543
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.49 E-value=0.00032 Score=74.63 Aligned_cols=113 Identities=25% Similarity=0.436 Sum_probs=66.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC----------CCEEEEe-chhhHHHHhh-------------hchHHHHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSIS-GSEFVEMFVG-------------VGASRVRDLFKKAK 346 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g----------~pf~~vs-~s~~~~~~~G-------------~~~~~vr~lF~~A~ 346 (720)
+++++.||||+|||++.+++++... .++..++ ..++...+.+ ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4899999999999999999998763 2232222 1233211111 11122345666777
Q ss_pred hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchh--------hcCCCcc
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA--------LLRPGRF 418 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~A--------LlrpgRF 418 (720)
...|.+|++||+.. ...+..++..+. .+..+|++|+.++ +... |+..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCce
Confidence 78999999999621 123444444442 3567888888643 2223 2334457
Q ss_pred cceeeec
Q 005003 419 DRQVTVD 425 (720)
Q Consensus 419 dr~I~i~ 425 (720)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7666553
No 294
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.00088 Score=75.16 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=75.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 371 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 371 (720)
-++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999988888775556666655544322111 12222233333334579999999997
Q ss_pred CChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHH
Q 005003 372 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434 (720)
Q Consensus 372 ~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~ 434 (720)
+.....+..+..... .++++.+++...-....+-.=+||.. .+.+.+-+..+...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~~-~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRGK-DLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCce-eEEECCCCHHHHHh
Confidence 235666666655321 13455544433333333444467854 77787888888754
No 295
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.47 E-value=0.00056 Score=74.47 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=66.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH-H---hhh------------chHHHHHHHHHHHh
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 347 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~-~---~G~------------~~~~vr~lF~~A~~ 347 (720)
.+..+-+.++||||||||+||-.++.++ +.+.++++..+-.+. + .|. .+..+..+-...+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3444468899999999999999886543 778888877442221 1 011 11112222222355
Q ss_pred cCCeEEEEccchhcccccCC-CCCCCC--hHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 348 NAPCIVFVDEIDAVGRQRGT-GIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~~r~~-~~~~~~--~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
..+++|+||-+.++.++... +..+.. ....+.+.+.|..+...-...++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67899999999998753211 111111 112334455555555554556667776533
No 296
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.45 E-value=0.00073 Score=77.03 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=54.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh------hh--------chHHHHHHHHHHHhc
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 348 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~------G~--------~~~~vr~lF~~A~~~ 348 (720)
|+....-++|+|+||+|||+|+..+|... +.++++++..+-.+... |. .+..+..+.+.+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34444568999999999999999997754 46888888765443221 11 112345566666777
Q ss_pred CCeEEEEccchhccc
Q 005003 349 APCIVFVDEIDAVGR 363 (720)
Q Consensus 349 ~P~ILfIDEID~l~~ 363 (720)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999853
No 297
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00078 Score=81.26 Aligned_cols=163 Identities=25% Similarity=0.350 Sum_probs=107.2
Q ss_pred Cccccccc-hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEEec
Q 005003 255 TFDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISG 323 (720)
Q Consensus 255 ~f~dI~G~-de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~vs~ 323 (720)
.++-++|. ++..+. +++-|.... .++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~deeirR---vi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRR---VIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHH---HHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36677776 544443 444333322 2468999999999999999998854 334566666
Q ss_pred hhhH--HHHhhhchHHHHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEE
Q 005003 324 SEFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 400 (720)
Q Consensus 324 s~~~--~~~~G~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIa 400 (720)
..+. .++.|+.+.+++++.+.+. ....-||||||++.+...... .......|-|-..+ .++++-+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~nlLkp~L----~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAANLLKPLL----ARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHHhhHHHH----hcCCeEEEe
Confidence 5443 3567788889999999887 445679999999999654322 11222333222222 245588998
Q ss_pred EeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC
Q 005003 401 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 401 aTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
||...+ .-||++-| ||+ .+.++.|+.+.-..||......
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 886322 35899999 998 6788999987766666554333
No 298
>PRK13949 shikimate kinase; Provisional
Probab=97.41 E-value=0.00097 Score=65.95 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=28.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988765
No 299
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.40 E-value=0.0005 Score=64.81 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=30.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHh
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~ 331 (720)
|+++||||+|||++|+.++...+ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 55677777665443
No 300
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.39 E-value=0.0022 Score=65.14 Aligned_cols=186 Identities=11% Similarity=0.102 Sum_probs=86.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH----hhhchHHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF----VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~----~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
|+-+++.|+||+|||++|+.+|.+++.++ +..+++.... .+..+......|+.-+...+. ..+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~-----~~~~~~~~- 74 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSM-----TDENIVKG- 74 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCc-----chhHHHHH-
Confidence 44689999999999999999999998765 3444433211 111101111111111111100 00011000
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC-CCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 444 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN-~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~ 444 (720)
-.+..+.+...+-...+.+-..+.-+|+-++. .++.++..... . ...+.+..++.+..++=+........
T Consensus 75 ------y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~ 145 (197)
T PRK12339 75 ------YLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTN--N-IRAFYLYIRDAELHRSRLADRINYTH 145 (197)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhc--C-eEEEEEEeCCHHHHHHHHHHHhhccc
Confidence 00001111111111111111122234444444 34444432221 2 23556666666654333333332211
Q ss_pred CcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 005003 445 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 445 l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~ 499 (720)
.+...+...+. -.+++.+=+.....|...+-..|+..++++++++.+.
T Consensus 146 --~~~p~~~~~~~-----~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~ 193 (197)
T PRK12339 146 --KNSPGKRLAEH-----LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLD 193 (197)
T ss_pred --CCCcHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 11112333332 2355556566667777888899999999999988754
No 301
>PRK04296 thymidine kinase; Provisional
Probab=97.39 E-value=0.00059 Score=68.72 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=42.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEec--h--hhHH---HHhhhc-----hHHHHHHHHHHH--hcCCeEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG--S--EFVE---MFVGVG-----ASRVRDLFKKAK--ENAPCIVF 354 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~--s--~~~~---~~~G~~-----~~~vr~lF~~A~--~~~P~ILf 354 (720)
-.+++||||+|||+++..++.++ +..++.+.. . .... ...|.. .....++++.++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 566665543 1 1100 011110 112344444443 34567999
Q ss_pred Eccchhc
Q 005003 355 VDEIDAV 361 (720)
Q Consensus 355 IDEID~l 361 (720)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999766
No 302
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.37 E-value=0.0048 Score=66.52 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=47.4
Q ss_pred cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhh---------------
Q 005003 348 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL--------------- 412 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~AL--------------- 412 (720)
..+-||||||+|++- .++ +.+++..+..+-...++++|.+.++ +.+..++
T Consensus 171 ~~~iViiIDdLDR~~----------~~~----i~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCS----------PEE----IVELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCC----------cHH----HHHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHH
Confidence 346799999999982 222 3334444433334478888888874 2222222
Q ss_pred -cCCCcccceeeecCCCHHHHHHHHHHhh
Q 005003 413 -LRPGRFDRQVTVDVPDIRGRTEILKVHG 440 (720)
Q Consensus 413 -lrpgRFdr~I~i~~Pd~~eR~~IL~~~l 440 (720)
+.. -|+..+.+|.|+..+....+...+
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHH
Confidence 210 456678888899888887777664
No 303
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.35 E-value=0.0017 Score=70.04 Aligned_cols=160 Identities=21% Similarity=0.365 Sum_probs=92.0
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHH---HHhcCCCEEEEechhhHH--H--
Q 005003 258 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI---AGEAGVPFFSISGSEFVE--M-- 329 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAl---A~e~g~pf~~vs~s~~~~--~-- 329 (720)
.+.|..+..+.+.+++.. .-..+ ...+++.||.|+|||.+.... +.+.|-.|+.+....+.. +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456666666677777654 11111 237999999999999765544 336677777765433221 1
Q ss_pred -----------------HhhhchHHHHHHHHHHHh-----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh
Q 005003 330 -----------------FVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 387 (720)
Q Consensus 330 -----------------~~G~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l 387 (720)
..|.....+..++...+. ..+.|.++||||.+.+. .++-.+..++..-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 112223333344444332 12345556799998532 2333344444322
Q ss_pred cCccCCCcEEEEEEeCCCC---ccchhhcCCCcccce-eeecCC-CHHHHHHHHHHhh
Q 005003 388 DGFEGNTGIIVIAATNRAD---ILDSALLRPGRFDRQ-VTVDVP-DIRGRTEILKVHG 440 (720)
Q Consensus 388 dg~~~~~~ViVIaaTN~p~---~LD~ALlrpgRFdr~-I~i~~P-d~~eR~~IL~~~l 440 (720)
+ .....+.||+.|.+.+ .|.....+ ||... |++.+| +..+-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 2245799999998866 45567777 99864 666544 4666677777665
No 304
>PRK07261 topology modulation protein; Provisional
Probab=97.34 E-value=0.0003 Score=69.59 Aligned_cols=32 Identities=22% Similarity=0.517 Sum_probs=28.9
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
|+++|+||+||||+|+.++...+.|++..+.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 89999999999999999999999998876543
No 305
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.34 E-value=0.00076 Score=74.84 Aligned_cols=72 Identities=26% Similarity=0.374 Sum_probs=43.8
Q ss_pred EEEEccCCChHHHHHHHHHHhcC-----CCEEEEechhh-------HHHHh---------hhchHHHH---HHHHHHH--
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF-------VEMFV---------GVGASRVR---DLFKKAK-- 346 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g-----~pf~~vs~s~~-------~~~~~---------G~~~~~vr---~lF~~A~-- 346 (720)
.+|+||||+|||+|++.|++... +..+.+-..+. ..... .....+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998663 33232222222 11111 11222333 3344443
Q ss_pred --hcCCeEEEEccchhcccc
Q 005003 347 --ENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 347 --~~~P~ILfIDEID~l~~~ 364 (720)
.....+||||||+.+.+.
T Consensus 252 ~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHcCCCEEEEEEChHHHHHH
Confidence 245689999999999653
No 306
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.0014 Score=67.31 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=61.5
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---c-CCCEEEEechhhHHH--------------Hhh---------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---A-GVPFFSISGSEFVEM--------------FVG--------------- 332 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~-g~pf~~vs~s~~~~~--------------~~G--------------- 332 (720)
|.+....+|++||||||||+++..++.+ . |-++++++..+-.+. +..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 4555567999999999999999987543 2 888888875432221 100
Q ss_pred ----hchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 333 ----VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 333 ----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
........+-+..+...+++++||-+..+. ... ........+..+...+. ..++.++.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 001112333334455677999999999982 211 22334455666666553 33444454444
No 307
>PRK14532 adenylate kinase; Provisional
Probab=97.34 E-value=0.0006 Score=67.94 Aligned_cols=36 Identities=31% Similarity=0.573 Sum_probs=29.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
.++|.||||+|||++|+.+|+..|+++ ++.+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999998655 555566544
No 308
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.32 E-value=0.00073 Score=69.10 Aligned_cols=116 Identities=24% Similarity=0.279 Sum_probs=66.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---C------CCEEEEechhhH--HHHh------h---------------h
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSISGSEFV--EMFV------G---------------V 333 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g------~pf~~vs~s~~~--~~~~------G---------------~ 333 (720)
|.+...-+.|+||||+|||+++..+|... + ..+++++..+-. +.+. + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 34444568999999999999999997653 3 667777765421 1100 0 0
Q ss_pred chHHHHHHHHHH----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 334 GASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 334 ~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
....+...+... ....+++|+||-+..+....... .+...++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111122222222 24567899999999885432110 001124445666676666666555566666654
No 309
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.32 E-value=0.00098 Score=68.60 Aligned_cols=116 Identities=24% Similarity=0.268 Sum_probs=66.3
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhhH--HHHh------h---------------h
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--EMFV------G---------------V 333 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~~--~~~~------G---------------~ 333 (720)
|.+...-+.|+||||+|||+++..+|... +..+++++..+-. +.+. + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34445568999999999999999997543 2577888765411 1000 0 0
Q ss_pred chHHH----HHHHHHHHhc-CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 334 GASRV----RDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 334 ~~~~v----r~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
....+ ..+-...... .+++|+||-+.++......+ .+...+..+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 00111 2222223344 78999999999875321110 001134455666666666655555566666654
No 310
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.31 E-value=0.0017 Score=73.06 Aligned_cols=141 Identities=28% Similarity=0.344 Sum_probs=69.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHH-----H--H-HhcCCeEEEEccchhcc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFK-----K--A-KENAPCIVFVDEIDAVG 362 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~-----~--A-~~~~P~ILfIDEID~l~ 362 (720)
-+|||.|.|||.||-|.|.+-.-+-+-++. |+.. +.-.|-+++-+|+--. + | --....|++|||+|.+-
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 479999999999999999996655443332 2210 0011222222221100 0 0 00123699999999982
Q ss_pred cccCCCCCCCChHHHHHHHHHHhhhcCcc--CCCcEEEEEEeCCC----C-------cc--chhhcCCCcccceeeecCC
Q 005003 363 RQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRA----D-------IL--DSALLRPGRFDRQVTVDVP 427 (720)
Q Consensus 363 ~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--~~~~ViVIaaTN~p----~-------~L--D~ALlrpgRFdr~I~i~~P 427 (720)
....-.-++..+|.--.+-. -|.. -|...-|+||.|.+ | .+ -+.+++ |||..+-+.--
T Consensus 442 ---e~DRVAIHEAMEQQTISIAK--AGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~ 514 (729)
T KOG0481|consen 442 ---EDDRVAIHEAMEQQTISIAK--AGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDE 514 (729)
T ss_pred ---chhhhHHHHHHHhhhHHHhh--hcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEecc
Confidence 11000011111111111111 1111 13456688888852 1 23 367888 99976666533
Q ss_pred CHHHH-----HHHHHHhhc
Q 005003 428 DIRGR-----TEILKVHGS 441 (720)
Q Consensus 428 d~~eR-----~~IL~~~l~ 441 (720)
-.++| +.++..|..
T Consensus 515 h~~~~D~~lAkHVI~vH~~ 533 (729)
T KOG0481|consen 515 HDEERDITLAKHVINVHVS 533 (729)
T ss_pred CcchhhhHHHHHhhhhhcc
Confidence 22333 345556654
No 311
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.31 E-value=0.0016 Score=59.20 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
++++++||+|+|||+.+-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888887655
No 312
>PRK06762 hypothetical protein; Provisional
Probab=97.27 E-value=0.00098 Score=64.98 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=34.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
|+-++|+|+||+|||++|+.++..++..+..++...+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 56789999999999999999999987677778877766543
No 313
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.26 E-value=0.0022 Score=67.50 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV 316 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~ 316 (720)
-++|.||+|+|||++++.+++....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 4999999999999999999987643
No 314
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.26 E-value=0.0052 Score=69.68 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=31.6
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
..|..++++|++|+|||+++..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357789999999999999999998765 567777776544
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0024 Score=71.38 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc-------CCCEEEEechhhHH-------HH---hh------hchHHHHHHHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVE-------MF---VG------VGASRVRDLFKKA 345 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs~s~~~~-------~~---~G------~~~~~vr~lF~~A 345 (720)
.|+.++|+||+|+|||+.+..+|..+ +..+..+++..+.. .| .| .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 36689999999999999999998754 34555555544321 11 11 1222333333333
Q ss_pred HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC-CcEEEEEEeCCCCccchhhcCCC--ccccee
Q 005003 346 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPG--RFDRQV 422 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~-~~ViVIaaTN~p~~LD~ALlrpg--RFdr~I 422 (720)
....+|+||+..... .+.. .+.++...++..... ..++|+.+|.....+...+.+-. .++ .+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~ 317 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TV 317 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EE
Confidence 345799999986651 1111 244444444433322 45788888887776664443311 123 44
Q ss_pred eecCCCHHHHH
Q 005003 423 TVDVPDIRGRT 433 (720)
Q Consensus 423 ~i~~Pd~~eR~ 433 (720)
-+..-|...+.
T Consensus 318 I~TKlDet~~~ 328 (388)
T PRK12723 318 IFTKLDETTCV 328 (388)
T ss_pred EEEeccCCCcc
Confidence 45555555443
No 316
>PF14516 AAA_35: AAA-like domain
Probab=97.22 E-value=0.023 Score=62.29 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=85.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------HHh-----------h-------------hchHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MFV-----------G-------------VGASR 337 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~-------~~~-----------G-------------~~~~~ 337 (720)
-+.+.||..+|||++...+.+.+ |...+++++..+-. .+. + .....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 58999999999999998886544 77888887755321 000 0 01112
Q ss_pred HHHHHHHH---HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---CCCcEEEEEEeCC-CCccch
Q 005003 338 VRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTGIIVIAATNR-ADILDS 410 (720)
Q Consensus 338 vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---~~~~ViVIaaTN~-p~~LD~ 410 (720)
....|+.. ....|-||+|||||.+... .......+..|-...+.-. .-..+.+|.+... +.....
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~--------~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEY--------PQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccC--------cchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 23334431 2256899999999999532 1111222222211111111 1122333333222 222211
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCc
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 462 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~S 462 (720)
.-.+|=-+...+.++.-+.++-..+++.|-.. ..... ++.+-..+.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCCH
Confidence 22343333446667767888888888877433 22222 777777787753
No 317
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0013 Score=69.31 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=32.9
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e 313 (720)
..+..+.+.......+...+. +.+ -+++.||+|||||+||.++|-+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~~-----------lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SKQ-----------LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cCC-----------eEEEECCCCCCHHHHHHHHHHH
Confidence 345556666666665555443 221 5999999999999999999885
No 318
>PRK05973 replicative DNA helicase; Provisional
Probab=97.21 E-value=0.0024 Score=66.71 Aligned_cols=40 Identities=35% Similarity=0.277 Sum_probs=30.6
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
|..+..-++|.|+||+|||+++-.++.+. |.++++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 44444568999999999999998886644 78888887653
No 319
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.21 E-value=0.0018 Score=67.43 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=31.1
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechh
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 325 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~ 325 (720)
|.+....+|++||||+|||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5555667999999999999999876543 477888887654
No 320
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.20 E-value=0.00034 Score=73.93 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=63.4
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC---CEEEEe-chh
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSIS-GSE 325 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~---pf~~vs-~s~ 325 (720)
.....+++++.-.....+++.+++...-. ..+++++.||+|+|||++++++..+..- .++.+. ..+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 44567899998877777777666655311 1237999999999999999999987743 333332 112
Q ss_pred hHHH------Hhh-hchHHHHHHHHHHHhcCCeEEEEccchh
Q 005003 326 FVEM------FVG-VGASRVRDLFKKAKENAPCIVFVDEIDA 360 (720)
Q Consensus 326 ~~~~------~~G-~~~~~vr~lF~~A~~~~P~ILfIDEID~ 360 (720)
+.-. +.. .......+++..+.+..|++|+++||..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 2100 001 1334567788888889999999999954
No 321
>PRK13948 shikimate kinase; Provisional
Probab=97.19 E-value=0.0013 Score=66.11 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=34.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G 332 (720)
+|..|+|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 4578999999999999999999999999998554 44444333
No 322
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.17 E-value=0.0023 Score=65.63 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=58.9
Q ss_pred CceEEEEccCCChHHHHHHHHHH-----hcCCCEEE--------------EechhhHHHHhhhchHHHHHHHHH-HHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFS--------------ISGSEFVEMFVGVGASRVRDLFKK-AKENA 349 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~-----e~g~pf~~--------------vs~s~~~~~~~G~~~~~vr~lF~~-A~~~~ 349 (720)
++.++|+||.|+|||++.|.++. ..|.++.. +...+-...........++.+-.. +....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999983 33443221 111110111111111222222221 22356
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhh
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 412 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~AL 412 (720)
|++++|||+..-. ...+....+..++..+-. ....+..+|.+|+..+......
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8999999985521 112233444455555422 1112347777888777655444
No 323
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.16 E-value=0.0021 Score=67.74 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=30.3
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
|.....-++|.||||+|||+++..+|... +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 44444568999999999999999886653 7788888763
No 324
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.14 E-value=0.0079 Score=66.02 Aligned_cols=161 Identities=18% Similarity=0.247 Sum_probs=93.0
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH------H
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------M 329 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~------~ 329 (720)
-..+.+.+.+.+.+..++- +.. -..|..+.|||-.|||||.+.|.+-+..+.|.+.++|-+... .
T Consensus 5 ~~~v~~Re~qi~~L~~Llg---~~~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLG---NNS------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhC---CCC------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 3456666777776665552 211 145778899999999999999999999999999999866542 1
Q ss_pred H---h------hh----chHHHH---HHHHH--HHhc--CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC
Q 005003 330 F---V------GV----GASRVR---DLFKK--AKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 389 (720)
Q Consensus 330 ~---~------G~----~~~~vr---~lF~~--A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg 389 (720)
. + |. ....+. .+|.+ +..+ ..-.|++|.+|.+- +.....++.++..-+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-----------D~~a~ll~~l~~L~e- 143 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-----------DMDAILLQCLFRLYE- 143 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-----------ccchHHHHHHHHHHH-
Confidence 1 0 10 011122 23333 2112 24578899999993 122234444433222
Q ss_pred ccCCCcEEEEEEeCCCCccchhhcCCCcccc-eeeecCCCHHHHHHHHHHh
Q 005003 390 FEGNTGIIVIAATNRADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVH 439 (720)
Q Consensus 390 ~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr-~I~i~~Pd~~eR~~IL~~~ 439 (720)
.-....+.+|...-.++ +.-+.+-|-++- .+++|.|+.++.+.|+..-
T Consensus 144 l~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 144 LLNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HhCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22223333333332222 112222344443 6789999999999988654
No 325
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.13 E-value=0.0027 Score=65.65 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=31.1
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
|..+..-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 55555679999999999999999886543 7888888853
No 326
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.12 E-value=0.00081 Score=66.57 Aligned_cols=27 Identities=44% Similarity=0.882 Sum_probs=22.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPF 318 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf 318 (720)
.++|+|+||+||||+++.+...+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999998877 5553
No 327
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0015 Score=65.42 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=28.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.|+|.||||+||||+|+.||+. .++..+|..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4899999999999999999999 5555666555543
No 328
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.12 E-value=0.0018 Score=65.56 Aligned_cols=97 Identities=26% Similarity=0.383 Sum_probs=51.9
Q ss_pred eEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHH----HhhhchHHHHHHHHHHH---------hcCCeEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM----FVGVGASRVRDLFKKAK---------ENAPCIVFV 355 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~----~~G~~~~~vr~lF~~A~---------~~~P~ILfI 355 (720)
-.++.||||||||++++.++.. .+..++.+..+.-... -.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 5788999999999999998653 3677777765432211 11111122222221111 123479999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
||+..+. ...+..++..... ...++++++=.+.
T Consensus 100 DEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9998872 2345566665543 2345777775554
No 329
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.12 E-value=0.0058 Score=64.76 Aligned_cols=133 Identities=27% Similarity=0.428 Sum_probs=75.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHH------hcCCCEEEEechhhHHHH-hhhchHHHHHHHHHHH--------hcCCe
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSISGSEFVEMF-VGVGASRVRDLFKKAK--------ENAPC 351 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~------e~g~pf~~vs~s~~~~~~-~G~~~~~vr~lF~~A~--------~~~P~ 351 (720)
++...++||.||.|.|||.||+.+.. .+.-+|+.++|..+...- ...--..++..|.-|+ .....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 33444799999999999999999954 457899999998764210 0000111222332222 22346
Q ss_pred EEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC--c-------cCCCcEEEEEEeCCC--C-----ccchhhcCC
Q 005003 352 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F-------EGNTGIIVIAATNRA--D-----ILDSALLRP 415 (720)
Q Consensus 352 ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg--~-------~~~~~ViVIaaTN~p--~-----~LD~ALlrp 415 (720)
.+|+|||..+|. ++.. .||+.++. | ....++-+|+.|.+. . ..-+.|.-
T Consensus 285 mlfldeigelga----------deqa----mllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a- 349 (531)
T COG4650 285 MLFLDEIGELGA----------DEQA----MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA- 349 (531)
T ss_pred eEehHhhhhcCc----------cHHH----HHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH-
Confidence 999999999852 2222 23333331 1 112346667666541 1 12222222
Q ss_pred CcccceeeecCCCHHHHHHHH
Q 005003 416 GRFDRQVTVDVPDIRGRTEIL 436 (720)
Q Consensus 416 gRFdr~I~i~~Pd~~eR~~IL 436 (720)
|+. ...+.+|...+|.+-+
T Consensus 350 -rin-lwtf~lpgl~qr~edi 368 (531)
T COG4650 350 -RIN-LWTFTLPGLRQRQEDI 368 (531)
T ss_pred -hhh-eeeeeccccccCcccc
Confidence 333 5577888888886643
No 330
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.11 E-value=0.00082 Score=64.20 Aligned_cols=39 Identities=33% Similarity=0.691 Sum_probs=31.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G 332 (720)
+|+|+|+||+|||++|+.+|..++.+++.. ..+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 389999999999999999999999987744 455444333
No 331
>PRK09354 recA recombinase A; Provisional
Probab=97.11 E-value=0.0022 Score=70.54 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=63.7
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHH-H---hhh------------chHHHHHHHHHHHh
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 347 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~-~---~G~------------~~~~vr~lF~~A~~ 347 (720)
.+..+-++++||||||||+|+-.++.+ .|.+.++++...-.+. + .|. .+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 344446889999999999999987654 3778888876543221 1 010 11111112222345
Q ss_pred cCCeEEEEccchhcccccCC-CCCCC--ChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 348 NAPCIVFVDEIDAVGRQRGT-GIGGG--NDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~~r~~-~~~~~--~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
..+.+|+||-+-++.++..- +..+. .....+.+.+.|..+-..-...++.+|.+
T Consensus 137 ~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 137 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 67899999999998652111 10011 11223344454444444444556667665
No 332
>PRK04040 adenylate kinase; Provisional
Probab=97.10 E-value=0.0059 Score=61.53 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=28.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc--CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~--g~pf~~vs~s~~ 326 (720)
|+-++++|+||+|||++++.++..+ +.+++ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchH
Confidence 5679999999999999999999998 55554 44443
No 333
>PRK13947 shikimate kinase; Provisional
Probab=97.09 E-value=0.00047 Score=67.39 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
+|+|.|+||+|||++++.+|+.++.||+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987644
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=97.08 E-value=0.0036 Score=68.64 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------HH---hhh----------chHHHHHHHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VGV----------GASRVRDLFKKA 345 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~-------~~---~G~----------~~~~vr~lF~~A 345 (720)
.|+-++|+||||+|||+++..+|..+ +..+..+++..+.. .+ .|. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36779999999999999888887654 55666666543321 11 110 012233444555
Q ss_pred HhcCCeEEEEccchhc
Q 005003 346 KENAPCIVFVDEIDAV 361 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l 361 (720)
+.....+|+||.....
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555578999987655
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.07 E-value=0.0044 Score=61.16 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~ 312 (720)
-.++|+||+|||||+|.|++|.
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 3599999999999999999998
No 336
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.07 E-value=0.0032 Score=64.01 Aligned_cols=125 Identities=26% Similarity=0.398 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHH
Q 005003 266 KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA 345 (720)
Q Consensus 266 k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A 345 (720)
+..+...|....+| |.+....++|.|+.|+|||++.+.|+.+ ++.-+.... ....... ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHH----HH
Confidence 55566666655555 4455567899999999999999999666 221111100 0011111 11
Q ss_pred HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh-cCccC---------CCcEEEEEEeCCCCcc-chhhcC
Q 005003 346 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFEG---------NTGIIVIAATNRADIL-DSALLR 414 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l-dg~~~---------~~~ViVIaaTN~p~~L-D~ALlr 414 (720)
... -|+.+||++.+.++ ....+..++..- +.+.. ....++|||||..+.| |+.--|
T Consensus 94 ~~~--~iveldEl~~~~k~-----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR 160 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR 160 (198)
T ss_pred HHh--HheeHHHHhhcchh-----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe
Confidence 122 48899999998421 123455555432 22211 1247899999998755 444555
Q ss_pred CCcccceeeecC
Q 005003 415 PGRFDRQVTVDV 426 (720)
Q Consensus 415 pgRFdr~I~i~~ 426 (720)
||- .|++..
T Consensus 161 --Rf~-~v~v~~ 169 (198)
T PF05272_consen 161 --RFW-PVEVSK 169 (198)
T ss_pred --EEE-EEEEcC
Confidence 774 555544
No 337
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.07 E-value=0.0013 Score=64.47 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=60.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechhh--------HHHHhhh-----chHHHHHHHHHHHhcCCeEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEMFVGV-----GASRVRDLFKKAKENAPCIVF 354 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~~--------~~~~~G~-----~~~~vr~lF~~A~~~~P~ILf 354 (720)
...+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++. +-.+.+-.+..|--..|.+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 346899999999999999999986421 0122222111 1111111 122344456666678899999
Q ss_pred EccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 355 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 355 IDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
+||-..- -+....+.+.+++.++. .. +..+|.+|+.++
T Consensus 106 lDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 106 LDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred EECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 9997543 24445556666666553 12 445666676644
No 338
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.06 E-value=0.0096 Score=73.10 Aligned_cols=150 Identities=18% Similarity=0.245 Sum_probs=82.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechh-------hHHHH---h-----hh---c------------hHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE-------FVEMF---V-----GV---G------------ASRVRDL 341 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~-------~~~~~---~-----G~---~------------~~~vr~l 341 (720)
-++++||+|.|||+++...+...+ ++..++... |...+ + +. . ...+..+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 589999999999999999887776 766665531 11110 0 00 0 0112223
Q ss_pred HHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch-hhcCCCccc
Q 005003 342 FKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS-ALLRPGRFD 419 (720)
Q Consensus 342 F~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~-ALlrpgRFd 419 (720)
+..... ..|.+|+|||+|.+- +....+.+..|+..+ ..++.+|.++.....++- .+... +
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~---~ 174 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR---D 174 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---C
Confidence 333332 678999999999982 233344556666543 234444445543211211 11111 1
Q ss_pred ceeeec----CCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCc
Q 005003 420 RQVTVD----VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFS 462 (720)
Q Consensus 420 r~I~i~----~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~S 462 (720)
..+.+. .-+.++-.+++...+... + ...+...+...|.|..
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWA 219 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChH
Confidence 234454 457778888887654432 2 2233567777787753
No 339
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.05 E-value=0.00057 Score=73.81 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=46.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEec-hhhH-------HHHhhhchHHHHHHHHHHHhcCCeEEEEcc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG-SEFV-------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~-s~~~-------~~~~G~~~~~vr~lF~~A~~~~P~ILfIDE 357 (720)
++++++||+|+|||++++++++.. +..++.+.- .++. ............++++.+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 379999999999999999998875 223333321 1111 000111222567788888899999999999
Q ss_pred ch
Q 005003 358 ID 359 (720)
Q Consensus 358 ID 359 (720)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 83
No 340
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0041 Score=64.10 Aligned_cols=70 Identities=27% Similarity=0.414 Sum_probs=45.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc--------CCCEEEEech-hhHHHHhhh-------------chHHHHHHHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS-EFVEMFVGV-------------GASRVRDLFKKAKENA 349 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~--------g~pf~~vs~s-~~~~~~~G~-------------~~~~vr~lF~~A~~~~ 349 (720)
+.|+.||||||||++.|-+|.-+ ...+..++-+ +...-..|. ..-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999998854 2334444432 222111111 1122344566678899
Q ss_pred CeEEEEccchhc
Q 005003 350 PCIVFVDEIDAV 361 (720)
Q Consensus 350 P~ILfIDEID~l 361 (720)
|.|+++|||..-
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999553
No 341
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.04 E-value=0.0058 Score=62.72 Aligned_cols=109 Identities=24% Similarity=0.265 Sum_probs=61.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHHHh------h--------h-------chHH----
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------G--------V-------GASR---- 337 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~~~------G--------~-------~~~~---- 337 (720)
|.+...-+++.|+||+|||+++..++.+ .+.++++++..+-.+.+. | . ....
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 4444556899999999999999988754 377888887654332110 0 0 0000
Q ss_pred HHH----HHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 338 VRD----LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 338 vr~----lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
+.. +.....+..++.++||-+..+... .+...+..+.+..++..+. ..++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEc
Confidence 111 112234456788999998877211 1122334455666776664 23445555554
No 342
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.03 E-value=0.0034 Score=59.23 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=40.3
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 257 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
+.|.|+.-+++.+...+.. +.++. .+.|--+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5789999999988887765 44432 2334456689999999999999999975
No 343
>PRK13946 shikimate kinase; Provisional
Probab=97.03 E-value=0.0016 Score=65.15 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=30.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
.++.|+|.|+||+|||++++.+|+.+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3468999999999999999999999999988665
No 344
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0016 Score=64.55 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
++++|.|++|+|||++.+++|+.++.||+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998654
No 345
>PRK03839 putative kinase; Provisional
Probab=97.01 E-value=0.00055 Score=67.79 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=27.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
-|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 346
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.98 E-value=0.032 Score=60.63 Aligned_cols=130 Identities=17% Similarity=0.192 Sum_probs=67.9
Q ss_pred HHHHHHHHHh--c-CCeEEEEccchhcccccCCCC---CCCChHHHHHHHHHHhhhcCccC-CCcEEE--EEEeCC---C
Q 005003 338 VRDLFKKAKE--N-APCIVFVDEIDAVGRQRGTGI---GGGNDEREQTLNQLLTEMDGFEG-NTGIIV--IAATNR---A 405 (720)
Q Consensus 338 vr~lF~~A~~--~-~P~ILfIDEID~l~~~r~~~~---~~~~~e~~~~ln~LL~~ldg~~~-~~~ViV--IaaTN~---p 405 (720)
+..++++.+. . .|.++-||++..+...-.... ..-+...-.....++..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3344444432 2 578888999999976522111 11122233444555554333222 334444 565532 2
Q ss_pred C--ccchhhcCCCc------cc-------------ceeeecCCCHHHHHHHHHHhhcCCCCccccc----HHHHHHhCCC
Q 005003 406 D--ILDSALLRPGR------FD-------------RQVTVDVPDIRGRTEILKVHGSNKKFDADVS----LDVIAMRTPG 460 (720)
Q Consensus 406 ~--~LD~ALlrpgR------Fd-------------r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd----l~~LA~~t~G 460 (720)
. .++.++....- |. ..|+++..+.+|-..+++.+....-+....+ .+.+.. +.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~-~s~ 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFL-SSN 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHH-hcC
Confidence 2 45655554211 11 1578888889999999998876654443111 222222 335
Q ss_pred CcHHHHHH
Q 005003 461 FSGADLAN 468 (720)
Q Consensus 461 ~SgadL~~ 468 (720)
.+++++..
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 57777653
No 347
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.98 E-value=0.0038 Score=61.92 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=54.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH-Hhhh----------------chHHHHHHHHHHHhcCCeEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGV----------------GASRVRDLFKKAKENAPCIVF 354 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~-~~G~----------------~~~~vr~lF~~A~~~~P~ILf 354 (720)
-+|+.|+||+|||++|..++.+.+.+++++......+. .... ....+..+++.. ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998888887765432211 0000 011233333221 13356889
Q ss_pred EccchhcccccCCCCCCCChHHHHHHHHHHhhhcC
Q 005003 355 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 389 (720)
Q Consensus 355 IDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg 389 (720)
||-+..+..+.-.. ...+.....+.+++..+..
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHc
Confidence 99998885433210 0002233445566666553
No 348
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.98 E-value=0.00099 Score=66.68 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=44.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEech-hhHH---HH----------hhhchHHHHHHHHHHHhcCCeEEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFVE---MF----------VGVGASRVRDLFKKAKENAPCIVF 354 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s-~~~~---~~----------~G~~~~~vr~lF~~A~~~~P~ILf 354 (720)
..++|.||+|+|||++++++++... ...+.+... ++.. .. .+.......++++.+.+..|.+++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 3799999999999999999998653 122222111 1100 00 011123456777777788899999
Q ss_pred Eccch
Q 005003 355 VDEID 359 (720)
Q Consensus 355 IDEID 359 (720)
++|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99983
No 349
>PLN02200 adenylate kinase family protein
Probab=96.97 E-value=0.00096 Score=69.54 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=34.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
+.+.|.-+++.||||+|||++|+.+|...|++ .+++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 44566779999999999999999999998865 5677776643
No 350
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.96 E-value=0.0027 Score=69.00 Aligned_cols=114 Identities=23% Similarity=0.233 Sum_probs=65.5
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHh---------cCCCEEEEechh-hH-HHH------hhh---------------c
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGE---------AGVPFFSISGSE-FV-EMF------VGV---------------G 334 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e---------~g~pf~~vs~s~-~~-~~~------~G~---------------~ 334 (720)
++...-+.|+||||+|||.++..+|-. .+..+++++... |. +.+ .+. .
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 444456889999999999999887642 245778887654 11 100 011 0
Q ss_pred h----HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 335 A----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 335 ~----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
. ..+..+-.......+.+|+||-|-++.+..-.+ .+...++++.+++++..|..+....++.||.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 1 111222222234568899999999886532211 11233445557777766666655556666665
No 351
>PRK00625 shikimate kinase; Provisional
Probab=96.96 E-value=0.00071 Score=67.29 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
.|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998764
No 352
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.94 E-value=0.00079 Score=66.53 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=33.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
+-++|.|+||+|||++|+.++...+.+++.++...+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 368999999999999999999999888887776665543
No 353
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.0044 Score=63.69 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=29.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEec
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISG 323 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~ 323 (720)
|......++++||||+|||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4455567999999999999999987643 3667777775
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.93 E-value=0.0018 Score=65.64 Aligned_cols=108 Identities=27% Similarity=0.410 Sum_probs=59.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH-------HHH---hhh----------chHHHHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKAK 346 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~-------~~~---~G~----------~~~~vr~lF~~A~ 346 (720)
|+-++|.||+|+|||+.+-.+|..+ +..+..+++..+. ..| .+. .....++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6779999999999999888887644 5566666654442 111 111 1123445566665
Q ss_pred hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
...-.+|+||-...- ..+.+..+-+..++..+ .+..-.+|+.+|-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 555578888875332 11222333444444444 2333456666666666555
No 355
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.92 E-value=0.0037 Score=67.61 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=64.8
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechh-hHH-H---H---hhhchH------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-FVE-M---F---VGVGAS------------ 336 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~-~~~-~---~---~G~~~~------------ 336 (720)
|++...-++++||||+|||+++-.+|..+ +...++++..+ |.. . . .|....
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34445568999999999999999998663 33788888655 110 0 0 011000
Q ss_pred -------HHHHHHHHHHhc--CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 337 -------RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 337 -------~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
.+..+.+..... .+++|+||-|-.+.+..-.+ .+...++++.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~-~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG-RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 112222333333 36799999998875432111 111223445566666655555445566666654
No 356
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.013 Score=65.97 Aligned_cols=115 Identities=16% Similarity=0.263 Sum_probs=60.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhHH-------HH---hhh---chHHHHHHHHHHHhcCCeE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE-------MF---VGV---GASRVRDLFKKAKENAPCI 352 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~~-------~~---~G~---~~~~vr~lF~~A~~~~P~I 352 (720)
++-+++.||+|+|||+++..+|... |..+..+++..+.. .| .+. ....+.++.+.++.....+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999998754 44566666554322 11 111 1122344444444445678
Q ss_pred EEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhc
Q 005003 353 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL 413 (720)
Q Consensus 353 LfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALl 413 (720)
|+||=.... ..+...-..+..++...........++|+.+|...+.+.....
T Consensus 303 VLIDTaGr~---------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 303 ILIDTAGYS---------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEeCCCCC---------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 887753221 0111222222333332221122345777777777665554443
No 357
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.91 E-value=0.0033 Score=68.34 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=66.3
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhhH--HHH------hhhch-------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--EMF------VGVGA------------- 335 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~~--~~~------~G~~~------------- 335 (720)
|++...-++|+||||+|||+++-.+|-.+ +..+++++..+-. +.+ .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 44555568999999999999999998653 3478888765511 100 01000
Q ss_pred ------HHHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 336 ------SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 336 ------~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
..+..+...... ..+++|+||=|-++......+ .+...++++.+++++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001112222233 466899999999986432111 1112234555666666665554455666666643
No 358
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.91 E-value=0.0024 Score=60.22 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=28.0
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
|.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 359
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.91 E-value=0.0013 Score=66.66 Aligned_cols=67 Identities=28% Similarity=0.440 Sum_probs=42.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC----CEEEEec-hhhHH---------HHhhhchHHHHHHHHHHHhcCCeEEEEcc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISG-SEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~----pf~~vs~-s~~~~---------~~~G~~~~~vr~lF~~A~~~~P~ILfIDE 357 (720)
-+++.||+|+|||++++++++.... .++.+.. .++.. .-++.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 00122222345556666677899999999
Q ss_pred c
Q 005003 358 I 358 (720)
Q Consensus 358 I 358 (720)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 360
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.90 E-value=0.0045 Score=65.43 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.1
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s 324 (720)
|.+...-++++||||||||+++..+|.+ .|-++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4455566999999999999999988653 36688877754
No 361
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.89 E-value=0.0048 Score=61.70 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=53.2
Q ss_pred EEEEccCCChHHHHHHHHHH-----hcCCCEE--------------EEechhhHHHHhhhchHHHHHHHHHHH-hcCCeE
Q 005003 293 VLLVGPPGTGKTLLAKAIAG-----EAGVPFF--------------SISGSEFVEMFVGVGASRVRDLFKKAK-ENAPCI 352 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~-----e~g~pf~--------------~vs~s~~~~~~~G~~~~~vr~lF~~A~-~~~P~I 352 (720)
++|+||.|.|||++.|.++- ..|.++. .+...+....-.+.....++.+-..+. ...|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999973 3344321 111222121111111222333222222 236899
Q ss_pred EEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 353 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 353 LfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
+++||+..-. ...........++..+.. ..+..+|.+|+..+
T Consensus 82 lllDEp~~g~---------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT---------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC---------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 9999985531 122233444555555432 12445677777655
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.88 E-value=0.0054 Score=64.13 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.7
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
|+|+|+||+|||++|+.++..+ +.++..++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777655543
No 363
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.00076 Score=65.01 Aligned_cols=34 Identities=41% Similarity=0.827 Sum_probs=29.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
+||++|.||||||+++..+|...+.+++.+ ++++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 699999999999999999999999887765 4444
No 364
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.86 E-value=0.00089 Score=66.18 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=28.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
|+++||||+|||++|+.+|...+++ .++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999864 5566665543
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.84 E-value=0.0023 Score=74.42 Aligned_cols=54 Identities=31% Similarity=0.363 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 338 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 338 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
-|-.|....-++|.++||||.-.-. +++.+..+.++++.- -+++.||..+.++.
T Consensus 522 QRlafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 522 QRLAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHhh-----CCCCEEEEeccchh
Confidence 3456666777899999999985542 445566666666531 14567888777654
No 366
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.83 E-value=0.0037 Score=68.76 Aligned_cols=115 Identities=24% Similarity=0.234 Sum_probs=65.5
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechh-h-----HHHH--hhhc--------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-F-----VEMF--VGVG-------------- 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~-~-----~~~~--~G~~-------------- 334 (720)
|+....-..|+||||||||.|+..+|-.. +..+++++... | .+.. .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 33444457899999999999999886432 24677777643 1 1100 0110
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 335 -A----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 335 -~----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
. ..+..+-.......+.+|+||-|-++.+....+. +...++++.+++++..|..+....++.||.+
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0 1112222223345688999999999865422211 1223456667777776655544556666665
No 367
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.82 E-value=0.0024 Score=70.19 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=44.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC----CEEEEe-chhhHH---------HHhhhchHHHHHHHHHHHhcCCeEEEEcc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSIS-GSEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~----pf~~vs-~s~~~~---------~~~G~~~~~vr~lF~~A~~~~P~ILfIDE 357 (720)
.++++||+|+|||++.+++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999886542 233331 112110 00122222355667777788999999999
Q ss_pred ch
Q 005003 358 ID 359 (720)
Q Consensus 358 ID 359 (720)
+.
T Consensus 204 ir 205 (343)
T TIGR01420 204 MR 205 (343)
T ss_pred CC
Confidence 83
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.81 E-value=0.0043 Score=59.98 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=30.7
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
++++|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 77778787766654
No 369
>PRK04328 hypothetical protein; Provisional
Probab=96.81 E-value=0.011 Score=62.02 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=29.5
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s 324 (720)
|.+....+|++||||||||+++..++.+ .|-+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 4444557999999999999998877543 36788887763
No 370
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.81 E-value=0.0062 Score=73.18 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=66.2
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHH---hcCCCEEEEechhhHH-HH---hhh------------chHHHHHHHHHHHh
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE-MF---VGV------------GASRVRDLFKKAKE 347 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~---e~g~pf~~vs~s~~~~-~~---~G~------------~~~~vr~lF~~A~~ 347 (720)
.+..+-++++||||||||+|+..++. ..|.+.++++..+-.. .+ .|. .+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 44445689999999999999976544 3466777777654222 00 111 11111111122345
Q ss_pred cCCeEEEEccchhcccccCC-CCCCCC--hHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 348 NAPCIVFVDEIDAVGRQRGT-GIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~~r~~-~~~~~~--~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
..+.+|+||-+.++..+... +..+.. ...++.++++|..|..+....++.+|.|-
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 67899999999999752211 111111 22344456667666666556677777663
No 371
>PTZ00035 Rad51 protein; Provisional
Probab=96.80 E-value=0.0056 Score=67.30 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhh------HHHH--hhhc--------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VGVG-------------- 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~------~~~~--~G~~-------------- 334 (720)
|+....-+.|+||||+|||+++..++... +..+++++...- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 44444568899999999999999997533 345667765431 1100 0000
Q ss_pred -----hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 335 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 335 -----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
...+..+........+.+|+||-|-++.+..-.+. +...++++.+.+++..|..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01111122222345678999999999865321111 1223455667777776665554556666654
No 372
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.0096 Score=59.42 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=63.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-------------CEEEEechhhHHHHh-h-----h------chHHHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSISGSEFVEMFV-G-----V------GASRVRDLFKKA 345 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~-------------pf~~vs~s~~~~~~~-G-----~------~~~~vr~lF~~A 345 (720)
.-+.|.||+|+|||||.+++....|- ++.++...++.+.+- + . +-.+.+-.+..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 34889999999999999999743321 233332222222210 0 0 112334445555
Q ss_pred HhcC--CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceee
Q 005003 346 KENA--PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 423 (720)
Q Consensus 346 ~~~~--P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~ 423 (720)
.... |.++++||-..- -+....+.+.+++..+. . .+..||.+|+.++. .+ ..|+.+.
T Consensus 102 l~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~-----~~--~~d~i~~ 160 (176)
T cd03238 102 LFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV-----LS--SADWIID 160 (176)
T ss_pred HhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH-----HH--hCCEEEE
Confidence 5667 899999997553 23344445555555442 1 24456667776542 23 4566666
Q ss_pred ec
Q 005003 424 VD 425 (720)
Q Consensus 424 i~ 425 (720)
+.
T Consensus 161 l~ 162 (176)
T cd03238 161 FG 162 (176)
T ss_pred EC
Confidence 64
No 373
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.79 E-value=0.006 Score=63.41 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=25.9
Q ss_pred EEEEccCCChHHHHHHHHHHh---------------cCCCEEEEechh
Q 005003 293 VLLVGPPGTGKTLLAKAIAGE---------------AGVPFFSISGSE 325 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e---------------~g~pf~~vs~s~ 325 (720)
.+|+||||+|||+|+..+|-. -+.++++++..+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 589999999999999999753 134677887654
No 374
>PRK14531 adenylate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=65.65 Aligned_cols=36 Identities=28% Similarity=0.622 Sum_probs=29.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+-++++||||+|||++++.+|...|++++ +++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 35999999999999999999999987765 4545543
No 375
>PLN02674 adenylate kinase
Probab=96.78 E-value=0.0057 Score=64.18 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=30.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
+..++|.||||+||||+++.+|...+++ .++..+++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHHHH
Confidence 4569999999999999999999998865 4556666543
No 376
>PRK06217 hypothetical protein; Validated
Probab=96.77 E-value=0.0012 Score=65.79 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
.|+|.|+||+|||++|++|+..+++|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999977654
No 377
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.77 E-value=0.0018 Score=70.60 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=45.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEe-chhhH---H---HHhhhchHHHHHHHHHHHhcCCeEEEEccc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFV---E---MFVGVGASRVRDLFKKAKENAPCIVFVDEI 358 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs-~s~~~---~---~~~G~~~~~vr~lF~~A~~~~P~ILfIDEI 358 (720)
++++++|++|+|||+++++++.+. ...++.+. ..++. . .+.....-...++++.+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 479999999999999999999863 12233221 11111 0 011111234678888898999999999998
Q ss_pred h
Q 005003 359 D 359 (720)
Q Consensus 359 D 359 (720)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 378
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.76 E-value=0.0048 Score=71.06 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=53.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhh----------------------------c
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----------------------------G 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~----------------------------~ 334 (720)
|......+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+... .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 34444569999999999999999997754 6688888765544322110 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccchhcc
Q 005003 335 ASRVRDLFKKAKENAPCIVFVDEIDAVG 362 (720)
Q Consensus 335 ~~~vr~lF~~A~~~~P~ILfIDEID~l~ 362 (720)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 2344555666667788999999999874
No 379
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.76 E-value=0.0063 Score=58.41 Aligned_cols=98 Identities=27% Similarity=0.329 Sum_probs=54.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CEEEEech---hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS---EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s---~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 364 (720)
...+.|.||+|+|||+|++++++.... --+.++.. .++..+.+ + .+.+-.+..|-...|.++++||-..-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~-G-~~~rv~laral~~~p~illlDEP~~~L-- 101 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-G-EKMRLALAKLLLENPNLLLLDEPTNHL-- 101 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH-H-HHHHHHHHHHHhcCCCEEEEeCCccCC--
Confidence 346889999999999999999986521 00111110 00000111 1 223334555566788999999975532
Q ss_pred cCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 365 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 365 r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
+......+.+++.++. ..+|.+|+.++
T Consensus 102 --------D~~~~~~l~~~l~~~~-------~til~~th~~~ 128 (144)
T cd03221 102 --------DLESIEALEEALKEYP-------GTVILVSHDRY 128 (144)
T ss_pred --------CHHHHHHHHHHHHHcC-------CEEEEEECCHH
Confidence 3334445555555441 25666677644
No 380
>PRK13695 putative NTPase; Provisional
Probab=96.72 E-value=0.018 Score=56.79 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 381
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.72 E-value=0.014 Score=56.54 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred ceEEEEccCCChHHH-HHHHHHHhcC----CCEEEEec
Q 005003 291 KGVLLVGPPGTGKTL-LAKAIAGEAG----VPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~-LArAlA~e~g----~pf~~vs~ 323 (720)
+.+++.||+|+|||. ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 379999999999999 5555544432 34555554
No 382
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.72 E-value=0.0013 Score=62.89 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=27.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
++|+|+||+|||++|+.++...+.+++ +.+.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887655 455443
No 383
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.017 Score=64.45 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH----HH---H-
Q 005003 263 DEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EM---F- 330 (720)
Q Consensus 263 de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~----~~---~- 330 (720)
++.++.+.+.+.. +..+..+ ...|+-++|.||+|+|||+++..||..+ +..+..+++..+. +. |
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4455555554433 3222111 2236789999999999999999998765 4566666664332 11 1
Q ss_pred --------hhhchHHHHHHHHHHHh-cCCeEEEEccchh
Q 005003 331 --------VGVGASRVRDLFKKAKE-NAPCIVFVDEIDA 360 (720)
Q Consensus 331 --------~G~~~~~vr~lF~~A~~-~~P~ILfIDEID~ 360 (720)
.......+.+.+..++. ....+||||-...
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 11234445555555543 2346888886544
No 384
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.012 Score=65.23 Aligned_cols=147 Identities=19% Similarity=0.310 Sum_probs=86.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc--CCCEEEEechhhHHHHh------h--------hchHHHHHHHHHHHhcCCeEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEMFV------G--------VGASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~--g~pf~~vs~s~~~~~~~------G--------~~~~~vr~lF~~A~~~~P~ILfI 355 (720)
-+|+-|.||.|||||.-.+|..+ ..+++|+++.+-....- + ..+..+.++.+.+....|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 47888999999999888876654 23899999987654321 1 12345778888888999999999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCc--EEEEEEeCCCC-ccchhhcCCCcccceeeecCCCHHHH
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDIRGR 432 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~--ViVIaaTN~p~-~LD~ALlrpgRFdr~I~i~~Pd~~eR 432 (720)
|-|..+....-.+..++-....+.-++|... ....+ +++++-..... .--|.++- +-.|-+++|.- |....
T Consensus 175 DSIQT~~s~~~~SapGsVsQVRe~t~~L~~~----AK~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~ 248 (456)
T COG1066 175 DSIQTLYSEEITSAPGSVSQVREVAAELMRL----AKTKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSR 248 (456)
T ss_pred eccceeecccccCCCCcHHHHHHHHHHHHHH----HHHcCCeEEEEEEEcccccccCchhee-eeeeEEEEEec-cCCCc
Confidence 9999997655333333333333333333332 22333 44444433322 22233333 24555556542 33455
Q ss_pred HHHHHHhhcCCC
Q 005003 433 TEILKVHGSNKK 444 (720)
Q Consensus 433 ~~IL~~~l~~~~ 444 (720)
.+|++.+-++..
T Consensus 249 ~RiLR~vKNRFG 260 (456)
T COG1066 249 YRILRSVKNRFG 260 (456)
T ss_pred eeeeehhcccCC
Confidence 567766544443
No 385
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.71 E-value=0.0092 Score=59.17 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=54.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH-----HH---Hh---------hhchHHHHHHHHHHHhcCCeEEEE
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-----EM---FV---------GVGASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~-----~~---~~---------G~~~~~vr~lF~~A~~~~P~ILfI 355 (720)
+|+.|+||+|||++|..++.+.+.+++++....-. .. +. .+....+.+.++.. ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998878788887654321 11 10 01122333333222 14678999
Q ss_pred ccchhcccccCCCCCCC-ChHHHHHHHHHHhhhc
Q 005003 356 DEIDAVGRQRGTGIGGG-NDEREQTLNQLLTEMD 388 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~-~~e~~~~ln~LL~~ld 388 (720)
|-+..+..+--...... .+...+.+..|+..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 99988765432210000 0122344555666655
No 386
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.71 E-value=0.0051 Score=66.73 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=30.0
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
.++..|+|+|+||+|||++++.+|..+|+||+.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 445689999999999999999999999999994
No 387
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.70 E-value=0.0014 Score=65.27 Aligned_cols=35 Identities=40% Similarity=0.771 Sum_probs=28.8
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
|+|+||||+|||++|+.||...++++ ++.++++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHH
Confidence 79999999999999999999988765 455555543
No 388
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.69 E-value=0.0022 Score=69.88 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=45.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEe-chhhHH------HHhhhchHHHHHHHHHHHhcCCeEEEEccc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFVE------MFVGVGASRVRDLFKKAKENAPCIVFVDEI 358 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs-~s~~~~------~~~G~~~~~vr~lF~~A~~~~P~ILfIDEI 358 (720)
+++|++|++|+|||+++++++... +..++.+- ..++.- .+.....-...++++.+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999998875 22333322 112110 001111224667888888899999999998
No 389
>PTZ00202 tuzin; Provisional
Probab=96.68 E-value=0.049 Score=61.52 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=51.5
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
+-...+++|.++...++.+++.... ...|+-+.|.||+|+|||++++.++..++.+.++++...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3457799999999999988886422 224557899999999999999999999998888777653
No 390
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.68 E-value=0.0033 Score=68.91 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=46.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CEEEEe-chhhHH--------HH-----hhhchHHHHHHHHHHHhcCCeEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE--------MF-----VGVGASRVRDLFKKAKENAPCIV 353 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs-~s~~~~--------~~-----~G~~~~~vr~lF~~A~~~~P~IL 353 (720)
.++++++|++|+|||++++++.....- .++.+- ..++.- .+ .+...-...++++.+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 458999999999999999999886632 222221 111110 00 11122345778888889999999
Q ss_pred EEccch
Q 005003 354 FVDEID 359 (720)
Q Consensus 354 fIDEID 359 (720)
++.|+.
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999984
No 391
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.67 E-value=0.0043 Score=65.82 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=57.5
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---CCEEEEe-chhhHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFVE 328 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs-~s~~~~ 328 (720)
..+++++.-.++..+.+++++. .+. ..+++.||+|+|||++++++..+.. ..++.+. ..++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~---~~~----------GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE---KPH----------GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---cCC----------CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3467777655555555544442 211 1489999999999999999977653 2344432 111110
Q ss_pred ------HHhhhchHHHHHHHHHHHhcCCeEEEEccchh
Q 005003 329 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360 (720)
Q Consensus 329 ------~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~ 360 (720)
...........+....+.+..|++|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00011112356677777788999999999944
No 392
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.67 E-value=0.0052 Score=62.21 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.6
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~ 312 (720)
-++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 599999999999999999983
No 393
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.66 E-value=0.0052 Score=66.94 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=64.5
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhcC---------CCEEEEechhh------HHHH--hhhc--------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSEF------VEMF--VGVG-------------- 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~g---------~pf~~vs~s~~------~~~~--~G~~-------------- 334 (720)
|.....-+.++||||+|||+++..+|..+. ..+++++..+- .... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 344445688999999999999999876321 35677776551 1100 0100
Q ss_pred -hH----HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 335 -AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 335 -~~----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
.. .+..+........+.+|+||-|-++.+....+. +....++..+.+++..|..+....++.|+.+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 01 111222222345688999999999864321111 1112344556677776665555556666665
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.66 E-value=0.0018 Score=67.27 Aligned_cols=38 Identities=21% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.|.-++|.||||+||||+|+.+|+..+++++.+ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 344599999999999999999999999876654 44443
No 395
>PRK06696 uridine kinase; Validated
Probab=96.66 E-value=0.0034 Score=64.69 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=34.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 5568999999999999999999988 78888888887753
No 396
>PRK13808 adenylate kinase; Provisional
Probab=96.61 E-value=0.011 Score=64.82 Aligned_cols=34 Identities=29% Similarity=0.640 Sum_probs=28.2
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|+|+||||+|||++++.||...+++.+ +..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 899999999999999999999887554 4455553
No 397
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.61 E-value=0.0026 Score=64.97 Aligned_cols=132 Identities=25% Similarity=0.375 Sum_probs=61.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH-hhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF-VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 370 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~-~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 370 (720)
-++|+||+|||||.+|-++|++.|.|++..+.-...... +|.+ +....-++ ..+ =+++||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el~----~~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSELK----GTR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGGT----T-E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHHc----ccc-eeeecccccc---------
Confidence 378999999999999999999999999998865554432 2322 21111111 112 2777864332
Q ss_pred CCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCC---Ccccc-eeeecCCCHHHHHHHHHHhh
Q 005003 371 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP---GRFDR-QVTVDVPDIRGRTEILKVHG 440 (720)
Q Consensus 371 ~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrp---gRFdr-~I~i~~Pd~~eR~~IL~~~l 440 (720)
.|.-...+....|+..++......++|+=+-+.. .+..-..++ -.|.. +..++.||.+.-..-.+...
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv 139 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRV 139 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHH
Confidence 1223344566667777777777555555554432 111111110 12333 45667888776544444333
No 398
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.61 E-value=0.015 Score=67.06 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=31.3
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh----cCCCEEEEechh
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSE 325 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e----~g~pf~~vs~s~ 325 (720)
|....+.+|++||||||||++|..++.+ .|-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4555678999999999999999988442 267888887653
No 399
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.60 E-value=0.0038 Score=67.62 Aligned_cols=72 Identities=22% Similarity=0.415 Sum_probs=46.3
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCC--CEEEEe-chhhH-------HHH-----hhhchHHHHHHHHHHHhcCCeE
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFV-------EMF-----VGVGASRVRDLFKKAKENAPCI 352 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs-~s~~~-------~~~-----~G~~~~~vr~lF~~A~~~~P~I 352 (720)
+...++++.||+|+|||++++++++...- ..+.+. ..++. ... .+...-.+.+++..+.+..|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34458999999999999999999986631 222221 01110 000 0111234567788888899999
Q ss_pred EEEccch
Q 005003 353 VFVDEID 359 (720)
Q Consensus 353 LfIDEID 359 (720)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999984
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.60 E-value=0.01 Score=60.05 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.1
Q ss_pred eEEEEccCCChHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIA 311 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA 311 (720)
-++|+||.|+|||++.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 401
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.60 E-value=0.0016 Score=63.32 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=26.6
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986664 55444
No 402
>PRK13764 ATPase; Provisional
Probab=96.58 E-value=0.003 Score=74.05 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=41.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---CCEEEE-echhhH-----HHHhhhchHHHHHHHHHHHhcCCeEEEEccchh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSI-SGSEFV-----EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~v-s~s~~~-----~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~ 360 (720)
.+++|++||||+||||++++++.... ..+.++ +..++. ..+... ........+.+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 34899999999999999999998763 223232 111211 111100 01122333333567899999999843
No 403
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.57 E-value=0.0022 Score=62.84 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=28.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
+.++|+|+||+|||++++.+|..+|.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3689999999999999999999999998754
No 404
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.57 E-value=0.0022 Score=63.46 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=30.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999887654
No 405
>PRK06547 hypothetical protein; Provisional
Probab=96.57 E-value=0.0022 Score=63.76 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=28.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.+.-|++.|++|+|||++|+.+++..+++++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 355789999999999999999999998887754
No 406
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0081 Score=61.03 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=21.0
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~ 314 (720)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 407
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.56 E-value=0.0072 Score=64.73 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc----C-CCEEEEechhh
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF 326 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~----g-~pf~~vs~s~~ 326 (720)
.++.++|+||+|+|||+++..+|..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45679999999999999999998754 3 67777777654
No 408
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.56 E-value=0.0072 Score=66.49 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=66.6
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechh------hHHHH--hhh---------------c
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGV---------------G 334 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~------~~~~~--~G~---------------~ 334 (720)
.....-+.++|+||+|||.++..+|-.+ +.++++++... +.+.. .+. .
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 3444458899999999999999887432 23678887655 11110 000 0
Q ss_pred hHHHHHHH----HHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 335 ASRVRDLF----KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 335 ~~~vr~lF----~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
......++ .......+.+|+||-|-++.+....+. +....+++.+.+++..|..+....++.||.+.
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 01111122 223445789999999999865321111 12234555677777777666555666666653
No 409
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.55 E-value=0.011 Score=65.28 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=21.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 410
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.55 E-value=0.0065 Score=60.37 Aligned_cols=73 Identities=26% Similarity=0.317 Sum_probs=41.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhc-------------CCCEEEEechhhH----HHHh---h-h-----------------
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSEFV----EMFV---G-V----------------- 333 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~-------------g~pf~~vs~s~~~----~~~~---G-~----------------- 333 (720)
-++++||||+|||+++..+|... +.++++++...-. ..+. + .
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38999999999999999987643 3477788654322 1110 0 0
Q ss_pred -----------chHHHHHHHHHHHh-cCCeEEEEccchhcccc
Q 005003 334 -----------GASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 334 -----------~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~ 364 (720)
....+..+.+.++. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123445555555 56899999999999643
No 411
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0078 Score=59.24 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=58.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechhhH--------H---------HH---------hhhchHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV--------E---------MF---------VGVGASRVRDL 341 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~~~--------~---------~~---------~G~~~~~vr~l 341 (720)
..-+.|.||+|+|||+|.+.+++.... --+.+++.+.. . .+ ...+ .+.+-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G-~~~rl~ 106 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGG-QRQRIA 106 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHH-HHHHHH
Confidence 346899999999999999999986421 00112211110 0 00 0001 122333
Q ss_pred HHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 342 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 342 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
+..+-...|.++++||-.+- -+....+.+.+++.++. . +..+|.+|+.++.+
T Consensus 107 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 55555678999999996543 23344455566666553 1 24666777765544
No 412
>PRK14530 adenylate kinase; Provisional
Probab=96.55 E-value=0.0021 Score=65.73 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=28.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.|+|.||||+|||++++.||...+++++. ..+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHH
Confidence 59999999999999999999999877664 445443
No 413
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.55 E-value=0.028 Score=61.37 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=29.5
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
..|.-++|.||+|+||||++..+|..+ +..+..+++.-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 346679999999999999999998865 45566666543
No 414
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.55 E-value=0.0066 Score=64.93 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=31.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
++-+++.|+||||||++|+.++.+.. .+..++..++....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHh
Confidence 44689999999999999999999983 35566666665543
No 415
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.061 Score=56.30 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=100.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH---HHhh--hchH---HHHHHHHHHHhc---CC-eEEE
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE---MFVG--VGAS---RVRDLFKKAKEN---AP-CIVF 354 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~---~~~G--~~~~---~vr~lF~~A~~~---~P-~ILf 354 (720)
.+.|.-+||=|+||+|||++|.-+|.++|.+-+. +...+.+ ..++ ..+. -.-+.++..+.. .| +.=|
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 3457789999999999999999999999987653 3222222 2211 0011 111222222211 11 0012
Q ss_pred EccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHH
Q 005003 355 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434 (720)
Q Consensus 355 IDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~ 434 (720)
.|....+. ...+.++..-++ ...++++=+.-=-|..+++..+.. -...+.+-.+|.+.-+.
T Consensus 165 ~dqa~~V~-----------~GI~~VI~RAi~------eG~~lIIEGvHlVPg~i~~~~~~~--n~~~~~l~i~dee~Hr~ 225 (299)
T COG2074 165 EDQASAVM-----------VGIEAVIERAIE------EGEDLIIEGVHLVPGLIKEEALGN--NVFMFMLYIADEELHRE 225 (299)
T ss_pred HHHhHHHH-----------HHHHHHHHHHHh------cCcceEEEeeeeccccccHhhhcc--ceEEEEEEeCCHHHHHH
Confidence 22222220 011222222222 122333333333478888777732 22355666777776555
Q ss_pred HHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCc
Q 005003 435 ILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 435 IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
-|-...+....+.. ....++. -.+++.+-+.....|...|-..|+.+|+++++++++...
T Consensus 226 RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i 285 (299)
T COG2074 226 RFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDI 285 (299)
T ss_pred HHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHH
Confidence 44433332211111 1222222 136778888888888889999999999999999886543
No 416
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.014 Score=59.70 Aligned_cols=125 Identities=23% Similarity=0.328 Sum_probs=75.1
Q ss_pred CchhhhhccCcCCce--EEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh---------------------
Q 005003 278 KPERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV--------------------- 331 (720)
Q Consensus 278 ~p~~~~~~g~~~prg--VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~--------------------- 331 (720)
+.+.-+++|.-+|.| +++.|+.|||||.|.+.++--. +..+.+++...-...|.
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 344455676655544 8889999999999999997532 45555554321111000
Q ss_pred ------------hhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEE
Q 005003 332 ------------GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 399 (720)
Q Consensus 332 ------------G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVI 399 (720)
......+..+.+.-+.....+++||-+..+... + ..+.+++++..+..+...++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~---------~-~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY---------D-SEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc---------c-cHHHHHHHHHHHHHHHhCCCEEEE
Confidence 111223344444445556689999999988532 1 234556666766666666655554
Q ss_pred EEeCCCCccchhhcC
Q 005003 400 AATNRADILDSALLR 414 (720)
Q Consensus 400 aaTN~p~~LD~ALlr 414 (720)
|-+|+.+|++.+.
T Consensus 164 --Tvhp~~l~e~~~~ 176 (235)
T COG2874 164 --TVHPSALDEDVLT 176 (235)
T ss_pred --EeChhhcCHHHHH
Confidence 4467888888776
No 417
>PHA02624 large T antigen; Provisional
Probab=96.52 E-value=0.0042 Score=72.18 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=68.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
|.+.-+.++|+||||||||+++.+|++.++...+.++++.-...| .+.-+... -+.+||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F----------wL~pl~D~--~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF----------ELGCAIDQ--FMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH----------Hhhhhhhc--eEEEeeecccccccc
Confidence 334445899999999999999999999996667778755422211 11112111 377788875432211
Q ss_pred -CCCCCCCChHHHHHHHHHHhhhcCc-cC------CCc-----EEEEEEeCCCCccchhhcCCCcccceeeec
Q 005003 366 -GTGIGGGNDEREQTLNQLLTEMDGF-EG------NTG-----IIVIAATNRADILDSALLRPGRFDRQVTVD 425 (720)
Q Consensus 366 -~~~~~~~~~e~~~~ln~LL~~ldg~-~~------~~~-----ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~ 425 (720)
.-..|.+-+ -+..|-..+||. .- ... --.|.|||. ..++..+.- ||-+++.|.
T Consensus 495 ~~Lp~G~~~d----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 495 KDLPSGQGMN----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred ccCCcccccc----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 000111111 122344556654 10 001 135667775 457777777 898888775
No 418
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0089 Score=57.79 Aligned_cols=104 Identities=29% Similarity=0.382 Sum_probs=58.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC--EEEEechhhHH-------HH------hhhchHHHHHHHHHHHhcCCeEEEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFVE-------MF------VGVGASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~p--f~~vs~s~~~~-------~~------~G~~~~~vr~lF~~A~~~~P~ILfI 355 (720)
.-+.|.||+|+|||+|.+++++..... -+++++.+... .. ...+ .+.+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999865321 12233221110 00 1112 22333455555667899999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
||...=. +......+.+++.++- .. +..+|.+|+..+.++
T Consensus 105 DEp~~~l----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSGL----------DPASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 9986532 2333445555555442 22 345666777655433
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.49 E-value=0.012 Score=58.86 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=55.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC--CEEEEechhh--H-HH-HhhhchHHHHHHHHHHHhcCCeEEEEccchhccccc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--V-EM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 365 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~~--~-~~-~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 365 (720)
-+.|.||+|+|||||.+.+++.... --+.+++..+ . .. ....+ .+.+-.+..+-...|.++++||-..-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts~L--- 102 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSAYL--- 102 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCcccC---
Confidence 5889999999999999999985421 0111111100 0 00 01111 233444555666789999999975432
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 366 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 366 ~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
+....+.+..++.++. ...+..+|.+|+..+
T Consensus 103 -------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 103 -------DIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred -------CHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 3334444444554432 122245556666544
No 420
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.48 E-value=0.0071 Score=59.63 Aligned_cols=101 Identities=26% Similarity=0.416 Sum_probs=57.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC--CEEEEechh--------hHHH--Hh---------------hhchHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEM--FV---------------GVGASRVRDLFKK 344 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~--------~~~~--~~---------------G~~~~~vr~lF~~ 344 (720)
-+.|.||+|+|||+|.+.+++.... --+.+++.+ +... |+ -.+-.+.|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 4899999999999999999986421 011111111 0000 00 0111223445566
Q ss_pred HHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 345 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 345 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
|-...|.++++||--+- -+....+.+.+++..+.. .+..+|.+|+..+
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 66678999999997553 233445556666665531 2445666677644
No 421
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.48 E-value=0.012 Score=62.54 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=93.5
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchH
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 336 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~ 336 (720)
-+++=.+++.+.+..+..-+..|.- +.||.|.+|+||++++|..|.-++..++.+..+.-.+ ..+-..
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~G----------h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPRG----------HALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKE 75 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTTE----------EEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHcCCCC----------CeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHH
Confidence 4566678888888888888887642 7999999999999999999999999999887543111 112234
Q ss_pred HHHHHHHHHH-hcCCeEEEEccchhc-----------ccccCCCCCCCChHHHHHHHHHHhhhc--CccC----------
Q 005003 337 RVRDLFKKAK-ENAPCIVFVDEIDAV-----------GRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG---------- 392 (720)
Q Consensus 337 ~vr~lF~~A~-~~~P~ILfIDEID~l-----------~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~~---------- 392 (720)
.++.++..|- ++.|.+++++|-+-. .....-..--..+|.+..+..+-.... +...
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 4666666553 566888888774332 111110001123455555555543322 1110
Q ss_pred ---CCcEEEEEEeC-CCCc------cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC
Q 005003 393 ---NTGIIVIAATN-RADI------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 444 (720)
Q Consensus 393 ---~~~ViVIaaTN-~p~~------LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~ 444 (720)
+.+.-||.+-+ ..+. --|+|+. +. ....+...+.+....+-..++.+..
T Consensus 156 ~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~~ 214 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDIE 214 (268)
T ss_dssp HHHCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHHH
T ss_pred HHHHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhhc
Confidence 12332322222 2222 2355655 22 2456667778888888887776543
No 422
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.48 E-value=0.017 Score=57.15 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=58.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechhhH------HH---H----------------hhh--chHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV------EM---F----------------VGV--GASRVR 339 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~~~------~~---~----------------~G~--~~~~vr 339 (720)
....+.|.||+|+|||+|++.+++.... --+.+++.+.. .. | ... +-.+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 3346899999999999999999986421 11222221110 00 0 000 112233
Q ss_pred HHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 340 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 340 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
-.+..|-...|.++++||-.+-. +....+.+.+++.++. + +..+|.+|+.++.
T Consensus 107 v~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~ 159 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----K-DKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----C-CCEEEEEecCHHH
Confidence 44555566789999999975532 3344556666666552 2 3456666666543
No 423
>PHA02774 E1; Provisional
Probab=96.48 E-value=0.011 Score=68.40 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEE-Eec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~-vs~ 323 (720)
++++|+||||||||++|-+|++.++..++. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 489999999999999999999998655443 554
No 424
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.46 E-value=0.014 Score=57.29 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=28.1
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
++++||||+|||++++.+|..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 7899999999999999998764 667888877643
No 425
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.44 E-value=0.015 Score=57.15 Aligned_cols=100 Identities=32% Similarity=0.467 Sum_probs=57.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC-----------CEEEEechh------hHHHH----hh--hchHHHHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSISGSE------FVEMF----VG--VGASRVRDLFKKAK 346 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~-----------pf~~vs~s~------~~~~~----~G--~~~~~vr~lF~~A~ 346 (720)
..-+.|.||+|+|||+|++.+++.... .+.++.... ..+.. .. .+-.+.|-.+..|-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999986420 111111110 01111 00 01123344555666
Q ss_pred hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
...|.++++||-.+-. +....+.+.+++.++ +..+|.+|++++
T Consensus 107 ~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 107 LHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 6789999999976532 334455555666544 135666676653
No 426
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.053 Score=57.88 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=29.8
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
..|+-++++||+|+|||+++..+|..+ +..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 446788999999999999999998755 56666666653
No 427
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0092 Score=58.81 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVE 328 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~~ 328 (720)
.|.-++|.|+||+|||++|+.+++.+. ...+.++...+.+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 456799999999999999999999875 3356666655544
No 428
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0025 Score=62.40 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=26.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
|-+.|||||||||+|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 429
>PRK14528 adenylate kinase; Provisional
Probab=96.42 E-value=0.0028 Score=63.52 Aligned_cols=34 Identities=29% Similarity=0.664 Sum_probs=28.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.+++.||||+|||++|+.+|...+++++. ..++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999987755 44444
No 430
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.41 E-value=0.0087 Score=65.45 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=46.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhch--------HHHHH---HHHHHHhcCCeEEEEccch
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA--------SRVRD---LFKKAKENAPCIVFVDEID 359 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~--------~~vr~---lF~~A~~~~P~ILfIDEID 359 (720)
+.++|.|+||+|||+|++.+++..+.+++.-.+.++.....+... ..+.. ....+...++.+||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 369999999999999999999999999987766666544321000 11111 12333345667999995 4
Q ss_pred hc
Q 005003 360 AV 361 (720)
Q Consensus 360 ~l 361 (720)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 43
No 431
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.40 E-value=0.0052 Score=67.68 Aligned_cols=72 Identities=25% Similarity=0.383 Sum_probs=47.1
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCC--CEEEEe-chhhHH-------H-----HhhhchHHHHHHHHHHHhcCCeE
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE-------M-----FVGVGASRVRDLFKKAKENAPCI 352 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs-~s~~~~-------~-----~~G~~~~~vr~lF~~A~~~~P~I 352 (720)
+..+++|+.||+|+|||++++++++.... .++.+. ..++.- . ..+...-...++++.+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 33458999999999999999999987532 222221 111110 0 01112234567888888899999
Q ss_pred EEEccch
Q 005003 353 VFVDEID 359 (720)
Q Consensus 353 LfIDEID 359 (720)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
No 432
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.40 E-value=0.0097 Score=58.18 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.6
Q ss_pred CceEEEEccCCChHHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIA 311 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA 311 (720)
++..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999984
No 433
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.39 E-value=0.045 Score=57.36 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=72.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechhhHH---HH-----hhh---------chHH----HHHHHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE---MF-----VGV---------GASR----VRDLFKKA 345 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~~~~---~~-----~G~---------~~~~----vr~lF~~A 345 (720)
.|-.+++.|++|||||++++.+-....- ..+.+-+..... .| +.. ...+ +.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446999999999999999999765532 222222111111 11 000 0001 11111111
Q ss_pred Hh---cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCccccee
Q 005003 346 KE---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 422 (720)
Q Consensus 346 ~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I 422 (720)
.. ..+++|++|++.. .....+.+.+++..-. .-++-+|..+.....+|+.++. -.+..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 3368999999632 1123345666665322 3357778888888889999866 566666
Q ss_pred eecCCCHHHHHHHHHHh
Q 005003 423 TVDVPDIRGRTEILKVH 439 (720)
Q Consensus 423 ~i~~Pd~~eR~~IL~~~ 439 (720)
-+. -+..+...+++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 554 4555555555554
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.39 E-value=0.003 Score=62.34 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
-+++.||||+|||++++.++...|.+. ++.+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 488999999999999999999988654 4555544
No 435
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.022 Score=56.16 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=56.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC----------C-----------EEEEech-hhH------HHHhhhchHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGV----------P-----------FFSISGS-EFV------EMFVGVGASRVRDLFK 343 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~----------p-----------f~~vs~s-~~~------~~~~G~~~~~vr~lF~ 343 (720)
-+.|.||+|+|||+|.+.+++.... + +.++... .+. +...-.+-.+.+-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 5899999999999999999985410 1 1111100 000 0000011122334455
Q ss_pred HHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 344 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 344 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
.|-...|.++++||-.+-. +......+.+++..+. .. +..+|.+|+.++
T Consensus 108 ral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~ 156 (173)
T cd03230 108 QALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILE 156 (173)
T ss_pred HHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
Confidence 6666789999999976532 3344555556665542 12 345666666544
No 436
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.35 E-value=0.0072 Score=63.80 Aligned_cols=29 Identities=41% Similarity=0.668 Sum_probs=23.0
Q ss_pred ccCcCCc--eEEEEccCCChHHHHHHHHHHh
Q 005003 285 IGARIPK--GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 285 ~g~~~pr--gVLL~GPPGTGKT~LArAlA~e 313 (720)
+....|+ -+.|.||.|+|||||.|++++-
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3344444 4889999999999999999983
No 437
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.35 E-value=0.13 Score=55.68 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.8
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+.|.-+++.|++|+|||++|+.+|..++.+. .++++.+.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~re 129 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIRE 129 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHHH
Confidence 4577899999999999999999999999884 355555543
No 438
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.34 E-value=0.028 Score=65.07 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=30.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhh
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF 326 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~ 326 (720)
|.+...-+||+|+||+|||+++..++.+. |-+.++++..+-
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 34445569999999999999999875432 678888876543
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.34 E-value=0.0031 Score=64.29 Aligned_cols=34 Identities=41% Similarity=0.784 Sum_probs=28.2
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|++.||||+|||++|+.+|...|++.+. .++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999876654 445543
No 440
>PRK14527 adenylate kinase; Provisional
Probab=96.34 E-value=0.0031 Score=63.23 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=29.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.|.-++++||||+|||++|+.+|.+.+.+.+. ..+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 45679999999999999999999999876544 44444
No 441
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.33 E-value=0.019 Score=63.72 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 263 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 263 de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
+++++.+..+++.+.. ..|..+++.||.|||||++.+++...+ +.+++.+..+.
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg 60 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTG 60 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchH
Confidence 3455555555554432 235579999999999999999997766 33454444333
No 442
>PRK02496 adk adenylate kinase; Provisional
Probab=96.32 E-value=0.0034 Score=62.38 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=26.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
-+++.||||+|||++++.+|...+++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998776543
No 443
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.32 E-value=0.0066 Score=72.76 Aligned_cols=67 Identities=28% Similarity=0.347 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCC
Q 005003 337 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPG 416 (720)
Q Consensus 337 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpg 416 (720)
+-|=.+..|--..|.||++||.-+- -+.+.++.+.+-|.++.. +..+|..|+++.. ++
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t-----i~-- 672 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLST-----IR-- 672 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH-----hh--
Confidence 3444555555678999999997553 245566777776766642 2456666777543 34
Q ss_pred cccceeeec
Q 005003 417 RFDRQVTVD 425 (720)
Q Consensus 417 RFdr~I~i~ 425 (720)
+.|+.+.++
T Consensus 673 ~adrIiVl~ 681 (709)
T COG2274 673 SADRIIVLD 681 (709)
T ss_pred hccEEEEcc
Confidence 577766654
No 444
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.31 E-value=0.024 Score=57.89 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=55.8
Q ss_pred ceEEEEccCCChHHHHHHHHHH-----hcCCCEEE--------------Eechh----hHHHHhhhchHHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFS--------------ISGSE----FVEMFVGVGASRVRDLFKKAKE 347 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~-----e~g~pf~~--------------vs~s~----~~~~~~G~~~~~vr~lF~~A~~ 347 (720)
+-++|.||.|+|||++.+.++. .+|+++-. +...+ -.+.|.. ..+++..++.. .
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~-e~~~~~~il~~--~ 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFAS-EMSETAYILDY--A 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHH-HHHHHHHHHHh--c
Confidence 4589999999999999999974 33443210 01110 0111211 12233344443 3
Q ss_pred cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 348 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
..|+++++||+..= ....+.......+++.+... +..+|.+|+..+..+
T Consensus 107 ~~~~lvllDE~~~g---------t~~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~ 155 (204)
T cd03282 107 DGDSLVLIDELGRG---------TSSADGFAISLAILECLIKK----ESTVFFATHFRDIAA 155 (204)
T ss_pred CCCcEEEeccccCC---------CCHHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHH
Confidence 46789999998441 11222333334455554422 457777888766554
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.30 E-value=0.0077 Score=50.51 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.3
Q ss_pred EEEEccCCChHHHHHHHHHHhc-CCCEEEEec
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 323 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~ 323 (720)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 344444443
No 446
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.30 E-value=0.082 Score=60.82 Aligned_cols=147 Identities=25% Similarity=0.299 Sum_probs=79.9
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccC--cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE-echhhHH------
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIGA--RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVE------ 328 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g~--~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v-s~s~~~~------ 328 (720)
.|.|.+.+|+.+.=++-- .-++--..|. +-.-+|||.|.|.|-||-|.|.+-+.+...+-.. .+|.=+.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 678999999876654422 1121111222 2234799999999999999999977653322211 0110000
Q ss_pred HHhhhchHHHHH-HHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh----c--Cc--cCCCcEEEE
Q 005003 329 MFVGVGASRVRD-LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM----D--GF--EGNTGIIVI 399 (720)
Q Consensus 329 ~~~G~~~~~vr~-lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l----d--g~--~~~~~ViVI 399 (720)
.-...+++++.. ..-.| ...|++|||+|.+. +...-.+.+..++- . |+ .-+..+-|+
T Consensus 380 tD~eTGERRLEAGAMVLA---DRGVVCIDEFDKMs-----------DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLA---DRGVVCIDEFDKMS-----------DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eccccchhhhhcCceEEc---cCceEEehhccccc-----------chhHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 001122333211 01111 23599999999982 22222333333321 0 11 124468899
Q ss_pred EEeCCCC-------------ccchhhcCCCccccee
Q 005003 400 AATNRAD-------------ILDSALLRPGRFDRQV 422 (720)
Q Consensus 400 aaTN~p~-------------~LD~ALlrpgRFdr~I 422 (720)
||.|... .|+..|++ |||..+
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlF 479 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLF 479 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHh--hhcEEE
Confidence 9999632 47788999 999644
No 447
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.30 E-value=0.014 Score=59.10 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G 332 (720)
-+.|+|++|+|||++++.+++..|++++ ++.++......
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~ 41 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALA 41 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHh
Confidence 4889999999999999999998888776 66666654443
No 448
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.30 E-value=0.0081 Score=63.48 Aligned_cols=110 Identities=25% Similarity=0.284 Sum_probs=64.9
Q ss_pred EEEEccCCChHHHHHHHHHHhcC---------CCEEEEechh-hH--------HHHhhh--------------chHH---
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSE-FV--------EMFVGV--------------GASR--- 337 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g---------~pf~~vs~s~-~~--------~~~~G~--------------~~~~--- 337 (720)
.=|+||||+|||.|+-.+|-.+- ..+++++... |. +.+... ....
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 45999999999999998876542 3478887543 21 111000 0011
Q ss_pred -HHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 338 -VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 338 -vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
+..+-.........+|+||-|-++.+..-.+ .+...++.+.+..++..|..+....++.||.|..
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 1112222234556899999999997643221 1223456778888877777766666777776543
No 449
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.30 E-value=0.0083 Score=57.70 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=29.0
Q ss_pred EEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHh
Q 005003 295 LVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331 (720)
Q Consensus 295 L~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~ 331 (720)
|.||||+|||++|+.||.+.++ ..++..++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5677777776544
No 450
>PRK14529 adenylate kinase; Provisional
Probab=96.29 E-value=0.013 Score=60.81 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=28.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.++|.||||+|||++++.||...+.+.+ +..++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 3899999999999999999999997765 4445443
No 451
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.27 E-value=0.014 Score=73.07 Aligned_cols=135 Identities=23% Similarity=0.309 Sum_probs=90.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH--HHhhh----c---hHHHHHHHHHHHhcCCeEEEEccchhcc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGV----G---ASRVRDLFKKAKENAPCIVFVDEIDAVG 362 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~--~~~G~----~---~~~vr~lF~~A~~~~P~ILfIDEID~l~ 362 (720)
++||.||..+|||++...+|.+.|-.|+.++-.+..+ .|.|. . .+--..++-.|.++. ..|++||+.-.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 6999999999999999999999999999998765432 34432 1 111123344443333 47789998664
Q ss_pred cccCCCCCCCChHHHHHHHHHHhhhcC---------ccCCCcEEEEEEeCCCC------ccchhhcCCCcccceeeecCC
Q 005003 363 RQRGTGIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVTVDVP 427 (720)
Q Consensus 363 ~~r~~~~~~~~~e~~~~ln~LL~~ldg---------~~~~~~ViVIaaTN~p~------~LD~ALlrpgRFdr~I~i~~P 427 (720)
....-..+|.||..-.. ..+.+++.+.||-|.|. .|..|++. ||- .++|+--
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 22345566776653221 13445688889889775 57788887 885 5667666
Q ss_pred CHHHHHHHHHHhhc
Q 005003 428 DIRGRTEILKVHGS 441 (720)
Q Consensus 428 d~~eR~~IL~~~l~ 441 (720)
..++...||...+.
T Consensus 1035 pedEle~ILh~rc~ 1048 (4600)
T COG5271 1035 PEDELEEILHGRCE 1048 (4600)
T ss_pred cHHHHHHHHhccCc
Confidence 67788888876543
No 452
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.14 Score=53.68 Aligned_cols=136 Identities=12% Similarity=0.044 Sum_probs=93.4
Q ss_pred CceEEEEccCC-ChHHHHHHHHHHhcCC---------CEEEEechhhHHH-HhhhchHHHHHHHHHHHh----cCCeEEE
Q 005003 290 PKGVLLVGPPG-TGKTLLAKAIAGEAGV---------PFFSISGSEFVEM-FVGVGASRVRDLFKKAKE----NAPCIVF 354 (720)
Q Consensus 290 prgVLL~GPPG-TGKT~LArAlA~e~g~---------pf~~vs~s~~~~~-~~G~~~~~vr~lF~~A~~----~~P~ILf 354 (720)
....|+.|..+ +||..++..++....+ .+..+....-... -..-+...+|++-+.+.. ...-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 34799999998 9999999888776522 2333322100000 001234567776665532 3446999
Q ss_pred EccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHH
Q 005003 355 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 434 (720)
Q Consensus 355 IDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~ 434 (720)
||++|.+ .....|.||.-++. +..++++|..|+.++.+.|.+++ |+. .+.++.|+...-.+
T Consensus 95 I~~ae~m--------------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM--------------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNE 155 (263)
T ss_pred EechHHh--------------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHH
Confidence 9999998 24577899999885 55678888888889999999999 774 78899998877777
Q ss_pred HHHHhhcCCC
Q 005003 435 ILKVHGSNKK 444 (720)
Q Consensus 435 IL~~~l~~~~ 444 (720)
.....+....
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7776655443
No 453
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.24 E-value=0.0084 Score=66.70 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=45.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC-----CCEEEEec-hhhH-----------HHHhhhchHHHHHHHHHHHhcCCeEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISG-SEFV-----------EMFVGVGASRVRDLFKKAKENAPCIVF 354 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g-----~pf~~vs~-s~~~-----------~~~~G~~~~~vr~lF~~A~~~~P~ILf 354 (720)
.+|++||+|+|||++++++..... ..++.+.- .++. ..-+|.......+..+.+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987652 33444421 1211 011122222345667777788999999
Q ss_pred Eccchh
Q 005003 355 VDEIDA 360 (720)
Q Consensus 355 IDEID~ 360 (720)
++|+..
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999843
No 454
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.23 E-value=0.023 Score=56.80 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=30.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhc
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 334 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~ 334 (720)
|.|+|.+|+|||++++.++...++++ +++.++.......+
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~--i~~D~~~~~~~~~~ 41 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPV--IDADKIAHQVVEKG 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EeCCHHHHHHHhcC
Confidence 68999999999999999999866665 45566655444333
No 455
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.23 E-value=0.0039 Score=63.73 Aligned_cols=34 Identities=41% Similarity=0.777 Sum_probs=28.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|+++||||+|||++|+.+|...+++.+. ..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 8999999999999999999999876654 444443
No 456
>PRK10867 signal recognition particle protein; Provisional
Probab=96.23 E-value=0.027 Score=63.92 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhHHH----H------hh----------hchHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEM----F------VG----------VGASRVRDLFK 343 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~~~----~------~G----------~~~~~vr~lF~ 343 (720)
..|.-++++||+|+|||+++..+|..+ |..+..+++..+... + .+ ......++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777776643 677888887644321 1 00 11122334555
Q ss_pred HHHhcCCeEEEEccchhc
Q 005003 344 KAKENAPCIVFVDEIDAV 361 (720)
Q Consensus 344 ~A~~~~P~ILfIDEID~l 361 (720)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566666678888765443
No 457
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.033 Score=63.12 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=28.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~~ 326 (720)
++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999988887643 456777777654
No 458
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0034 Score=62.10 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
-++++|.||||||++++.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 38999999999999999999 8898877654
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.18 E-value=0.0036 Score=57.43 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~ 314 (720)
|+|.|+||+|||++|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 460
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.17 E-value=0.013 Score=64.25 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=55.9
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhccCcC-CceEEEEccCCChHHHHHHHHHHhc-CCCEEEEechhhHHHHhh
Q 005003 256 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 256 f~-dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~-prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~s~~~~~~~G 332 (720)
|+ ++.|+++.++++-+.+ +... .|... -+-++|.||+|+|||++++.+.+-+ ..|++.+..+-..+.-..
T Consensus 59 f~~~~~G~~~~i~~lV~~f---k~AA----~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYF---KSAA----QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHHHHHHHHH---HHHH----hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 8999999888655544 3322 12222 2358899999999999999997755 347777766655554455
Q ss_pred hchHHHHHHHHHH
Q 005003 333 VGASRVRDLFKKA 345 (720)
Q Consensus 333 ~~~~~vr~lF~~A 345 (720)
.-+..+|..|..-
T Consensus 132 L~P~~~r~~~~~~ 144 (358)
T PF08298_consen 132 LFPKELRREFEDE 144 (358)
T ss_pred hCCHhHHHHHHHH
Confidence 5566677766543
No 461
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.16 E-value=0.024 Score=56.35 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..+.|.||+|+|||+|.+.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
No 462
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.16 E-value=0.013 Score=65.88 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=31.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.+.|.|.|++|||||+|+++||...|.+.+.--+.++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 45799999999999999999999999887654444444
No 463
>PRK01184 hypothetical protein; Provisional
Probab=96.16 E-value=0.0044 Score=61.50 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=27.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
-|+|+||||+||||+++ ++.+.|++++.. ++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 48899999999999998 788999887654 4444
No 464
>PF13245 AAA_19: Part of AAA domain
Probab=96.15 E-value=0.0073 Score=51.95 Aligned_cols=32 Identities=41% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEccCCChHH-HHHHHHHHhc------CCCEEEEech
Q 005003 293 VLLVGPPGTGKT-LLAKAIAGEA------GVPFFSISGS 324 (720)
Q Consensus 293 VLL~GPPGTGKT-~LArAlA~e~------g~pf~~vs~s 324 (720)
+++.|||||||| ++++.++... +..++.++.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 556999999999 5666665544 4556666543
No 465
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.14 E-value=0.015 Score=58.68 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=32.9
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc-CCCEEEEechhhHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEM 329 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~s~~~~~ 329 (720)
..|.-+++.|+||+|||+++..+..+. +-.++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 567889999999999999999999888 778888998887643
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.023 Score=65.87 Aligned_cols=77 Identities=27% Similarity=0.324 Sum_probs=49.4
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHh------hh----------------------c
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV----------------------G 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~------G~----------------------~ 334 (720)
|......++++||||+|||+++..++.+. |-++++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 34444568999999999999999987643 77888886543222110 00 0
Q ss_pred hHHHHHHHHHHHhcCCeEEEEccchhcc
Q 005003 335 ASRVRDLFKKAKENAPCIVFVDEIDAVG 362 (720)
Q Consensus 335 ~~~vr~lF~~A~~~~P~ILfIDEID~l~ 362 (720)
...+..+.+......|.+++||-+..+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 1122233334455678899999999885
No 467
>PRK04182 cytidylate kinase; Provisional
Probab=96.14 E-value=0.0049 Score=60.33 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
-|+|.|+||+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998764
No 468
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.13 E-value=0.022 Score=63.65 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-++|.||||+|||++++.+++..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhh
Confidence 39999999999999999999975
No 469
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.12 E-value=0.027 Score=58.29 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=56.9
Q ss_pred ceEEEEccCCChHHHHHHHHHH-h----cCCCEE--------------EEechhhHHH---HhhhchHHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAG-E----AGVPFF--------------SISGSEFVEM---FVGVGASRVRDLFKKAKEN 348 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~-e----~g~pf~--------------~vs~s~~~~~---~~G~~~~~vr~lF~~A~~~ 348 (720)
+-++|.||.|+|||++.+.++. . .|.++. .+...+-... ....--.++..+++.+ .
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~--~ 109 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNC--T 109 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhC--C
Confidence 3589999999999999999987 1 232211 1111111110 1111223455555554 3
Q ss_pred CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 349 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 349 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
.++++++||+..= ....+.......+++.+.. ..+..+|.+|..++..+
T Consensus 110 ~~sLvllDE~~~g---------T~~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 110 SRSLVILDELGRG---------TSTHDGIAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEccCCCC---------CChhhHHHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 5789999998541 1112222223344444432 23457788898877543
No 470
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.12 E-value=0.021 Score=56.19 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
+.-+.|.|+||+|||++|+.++..+ +..+..+++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 3468999999999999999999876 44567777765543
No 471
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.11 E-value=0.027 Score=56.76 Aligned_cols=33 Identities=48% Similarity=0.835 Sum_probs=25.7
Q ss_pred hhhccCcCCce--EEEEccCCChHHHHHHHHHHhc
Q 005003 282 FTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 282 ~~~~g~~~prg--VLL~GPPGTGKT~LArAlA~e~ 314 (720)
.......+++| ++|.||+|.|||++.|.+..+.
T Consensus 18 L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34444556665 8899999999999999998754
No 472
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.11 E-value=0.046 Score=61.83 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=31.5
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 346779999999999999999998755 677777777544
No 473
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.07 E-value=0.04 Score=61.17 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-.+|+||||||||++++.+++..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998865
No 474
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.06 E-value=0.026 Score=70.30 Aligned_cols=179 Identities=21% Similarity=0.218 Sum_probs=98.7
Q ss_pred cCCceEEEEccCCChHHHH-HHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhc---------------CCe
Q 005003 288 RIPKGVLLVGPPGTGKTLL-AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN---------------APC 351 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~L-ArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~---------------~P~ 351 (720)
.--|+++++||||+|||++ .-++-++.-..+++++-+.-.. ++..++-+ ++-... .--
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~L-er~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVL-ERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHH-HhhceeeccCCeEEEccCcchhhe
Confidence 3456999999999999985 5677777777787777543211 12222222 111110 114
Q ss_pred EEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC--------CcEEEEEEeCCCCccchhhcCCCcccc---
Q 005003 352 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRADILDSALLRPGRFDR--- 420 (720)
Q Consensus 352 ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~--------~~ViVIaaTN~p~~LD~ALlrpgRFdr--- 420 (720)
|||.|||. +-..+... ..+ .--.+.+|+ +-+||... .++++.+++|.+.... ..-=|.||-|
T Consensus 1566 VLFcDeIn-Lp~~~~y~--~~~--vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-Rv~~~eRf~r~~v 1638 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYY--PPT--VIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEG-RVKYYERFIRKPV 1638 (3164)
T ss_pred EEEeeccC-CccccccC--CCc--eEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcc-cCccHHHHhcCce
Confidence 99999998 42222111 000 001112222 22344332 3799999999876322 0111224443
Q ss_pred eeeecCCCHHHHHHHHHHhhcCCCCc-cc------------ccH--------HHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 421 QVTVDVPDIRGRTEILKVHGSNKKFD-AD------------VSL--------DVIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 421 ~I~i~~Pd~~eR~~IL~~~l~~~~l~-~d------------vdl--------~~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
.+.+..|.......|.+.++.+.-+- ++ +.+ ....+.--||+|+||-..++...-.|..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT 1718 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAET 1718 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhc
Confidence 67888999999988888766443211 11 110 0111122579999999988876665543
No 475
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.24 Score=55.14 Aligned_cols=49 Identities=6% Similarity=0.014 Sum_probs=32.4
Q ss_pred eeeecCCCHHHHHHHHHHhhcCCCCcccc----cHHHHHHhCCCCcHHHHHHHH
Q 005003 421 QVTVDVPDIRGRTEILKVHGSNKKFDADV----SLDVIAMRTPGFSGADLANLL 470 (720)
Q Consensus 421 ~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv----dl~~LA~~t~G~SgadL~~lv 470 (720)
.|+++..+.+|-.+++..+++..-+..++ ....+--.+ +.+|+.++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 57888899999999999887664433222 234444444 66787666665
No 476
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.05 E-value=0.034 Score=55.96 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999875
No 477
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.05 E-value=0.0062 Score=59.26 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=24.2
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
|.|+|+||||||+|+++|+.. |.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999998 8887744444444
No 478
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.03 E-value=0.0058 Score=59.33 Aligned_cols=28 Identities=39% Similarity=0.742 Sum_probs=25.8
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
|.++|++|+|||++|+.+|+.++.|++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999988654
No 479
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.01 E-value=0.063 Score=55.71 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcc
Q 005003 339 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418 (720)
Q Consensus 339 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRF 418 (720)
|-.+..|--+.|.||+-||--.- -+.+....+..++.++. ...+..+|..|+. +.+.. +.
T Consensus 150 RVAIARAL~~~P~iilADEPTgn----------LD~~t~~~V~~ll~~~~---~~~g~tii~VTHd-----~~lA~--~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGN----------LDSKTAKEVLELLRELN---KERGKTIIMVTHD-----PELAK--YA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCcccc----------CChHHHHHHHHHHHHHH---HhcCCEEEEEcCC-----HHHHH--hC
Confidence 33445555678999999995321 23344445555555553 2345567777774 45555 77
Q ss_pred cceeeec
Q 005003 419 DRQVTVD 425 (720)
Q Consensus 419 dr~I~i~ 425 (720)
||+|.+.
T Consensus 210 dr~i~l~ 216 (226)
T COG1136 210 DRVIELK 216 (226)
T ss_pred CEEEEEe
Confidence 8777764
No 480
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.97 E-value=0.013 Score=59.88 Aligned_cols=23 Identities=57% Similarity=0.661 Sum_probs=18.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
No 481
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.046 Score=63.16 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 324 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s 324 (720)
..+.+.|+||+|+|||+++..||..+ +..+..++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 34568999999999999999998753 2345555543
No 482
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.95 E-value=0.014 Score=55.75 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=24.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVP 317 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~p 317 (720)
-++|.|+.|+|||+++|.+++.++.+
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999999999864
No 483
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.052 Score=54.48 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.-+.|.||+|+|||+|++.+++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999973
No 484
>PRK08233 hypothetical protein; Provisional
Probab=95.94 E-value=0.0076 Score=59.15 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC-CCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g-~pf~~vs~ 323 (720)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999985 44554443
No 485
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.93 E-value=0.017 Score=65.69 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=61.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCce-EEEEccCCChHHHHHHHHHHhcCCCEE-EEechhhHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFF-SISGSEFVE 328 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prg-VLL~GPPGTGKT~LArAlA~e~g~pf~-~vs~s~~~~ 328 (720)
....+|+++.......+.+.+++. . |.| +|++||.|+|||+...++-++++-+.. .++..|=++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---R-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---C-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 346788998888888877776653 2 445 677799999999999999888865443 222222222
Q ss_pred HH-hhh--------chHHHHHHHHHHHhcCCeEEEEccchhc
Q 005003 329 MF-VGV--------GASRVRDLFKKAKENAPCIVFVDEIDAV 361 (720)
Q Consensus 329 ~~-~G~--------~~~~vr~lF~~A~~~~P~ILfIDEID~l 361 (720)
.. .|. ..-.....++..-++.|+||.+.||-..
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 10 000 0001223444455678999999999543
No 486
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.93 E-value=0.025 Score=58.23 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~ 312 (720)
+-++|+||+|+|||++.|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999964
No 487
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0095 Score=65.55 Aligned_cols=27 Identities=56% Similarity=0.858 Sum_probs=22.7
Q ss_pred cCcCCce--EEEEccCCChHHHHHHHHHH
Q 005003 286 GARIPKG--VLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 286 g~~~prg--VLL~GPPGTGKT~LArAlA~ 312 (720)
...+.+| +.|.||+||||||+.|.||+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4455556 77999999999999999998
No 488
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.91 E-value=0.015 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.|+-++|+||||+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35679999999999999999998764
No 489
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.90 E-value=0.025 Score=56.14 Aligned_cols=104 Identities=25% Similarity=0.405 Sum_probs=57.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechh--------hHHH--H-------hhh------------chHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEM--F-------VGV------------GASRVR 339 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~--------~~~~--~-------~G~------------~~~~vr 339 (720)
.-+.|.||+|+|||+|.+.+++.... --+.+++.+ +... | +|. +-.+.+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 35899999999999999999986411 112222211 1000 0 000 111223
Q ss_pred HHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 340 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 340 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
-.+..+-...|.++++||-..- -+....+.+.+++.++. ...+..+|.+|+.++.
T Consensus 106 l~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~ 160 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLA---RERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 3444555678999999997543 23344555666666553 1213456667776553
No 490
>PLN02199 shikimate kinase
Probab=95.89 E-value=0.014 Score=62.79 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=28.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
+|+|.|.+|+|||++++.+|+.++++|+..+
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 7999999999999999999999999987543
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.88 E-value=0.01 Score=65.36 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=46.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CEEEEe-chhhH-------HH------HhhhchHHHHHHHHHHHhcCCeEEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFV-------EM------FVGVGASRVRDLFKKAKENAPCIVF 354 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs-~s~~~-------~~------~~G~~~~~vr~lF~~A~~~~P~ILf 354 (720)
+++++.|++|+|||++.+++.+...- ..+.+. ..++. .. ..|.+.-.+.++++.+.+..|..|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 48999999999999999999886531 122221 11111 00 0122233567888888899999999
Q ss_pred Eccch
Q 005003 355 VDEID 359 (720)
Q Consensus 355 IDEID 359 (720)
+.|+-
T Consensus 259 vGEiR 263 (340)
T TIGR03819 259 VGEVR 263 (340)
T ss_pred EeCcC
Confidence 99984
No 492
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.85 E-value=0.068 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
+..-+.|.||+|+|||+|++.+++..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999853
No 493
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.82 E-value=0.023 Score=68.61 Aligned_cols=97 Identities=24% Similarity=0.334 Sum_probs=56.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh---cC--CCEEEEechhh----HHHHhhhchHHHHHHHHHH---------H-hcCCeE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE---AG--VPFFSISGSEF----VEMFVGVGASRVRDLFKKA---------K-ENAPCI 352 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e---~g--~pf~~vs~s~~----~~~~~G~~~~~vr~lF~~A---------~-~~~P~I 352 (720)
-++|.|+||||||++++++... .+ .+++.+..+.- .....|..+..+..++... . .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 5899999999999999999553 34 45554433211 1111232233333333221 0 123579
Q ss_pred EEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 353 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 353 LfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
|+|||+..+. ...+..|+..+ .....+++++=.+..
T Consensus 420 lIvDEaSMvd--------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD--------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC--------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999998872 23455666543 345567888766653
No 494
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.027 Score=55.79 Aligned_cols=23 Identities=48% Similarity=0.759 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999754
No 495
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.77 E-value=0.012 Score=57.66 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=30.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
|.-|+|+|.||+|||++|+++...+ +.+++.+++..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3458999999999999999998765 78888888766543
No 496
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.76 E-value=0.013 Score=58.52 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=34.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
-|+|.|+|-+|||++|++|...+..|++.++...|.++
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 58999999999999999999999999999999999884
No 497
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.049 Score=54.85 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=35.1
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcC
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 414 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlr 414 (720)
..+-++||-.+-. +.+....++.++.+- ...+=+||+||..|-.++++..+
T Consensus 149 ~pLWiLDEP~taL----------Dk~g~a~l~~l~~~H----~~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 149 APLWILDEPFTAL----------DKEGVALLTALMAAH----AAQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred CCceeecCccccc----------CHHHHHHHHHHHHHH----hcCCCEEEEecCCccCCCccceE
Confidence 4577789976643 344566777776642 24556889999998888877776
No 498
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.73 E-value=0.082 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-.+++||.|+|||.+..|+.-.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999996544
No 499
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.72 E-value=0.0094 Score=66.51 Aligned_cols=46 Identities=33% Similarity=0.545 Sum_probs=37.9
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-.++++|..-.+..++.|.+-.+ |+|+.||||.||||+|+|+|.-.
T Consensus 242 vk~~ledY~L~dkl~eRL~erae-----------------GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 242 VKLSLEDYGLSDKLKERLEERAE-----------------GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EEechhhcCCCHHHHHHHHhhhc-----------------ceEEecCCCCChhHHHHHHHHHH
Confidence 34678888777888887776543 99999999999999999999854
No 500
>PF13479 AAA_24: AAA domain
Probab=95.71 E-value=0.015 Score=59.55 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=39.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh---HHH------HhhhchHHHHHHHHHH--HhcCCeEEEEccc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF---VEM------FVGVGASRVRDLFKKA--KENAPCIVFVDEI 358 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~---~~~------~~G~~~~~vr~lF~~A--~~~~P~ILfIDEI 358 (720)
+-.++||||||+|||++|..+ +-|++ +++..= ... +.-.+...+.+.++.+ ....-.+|+||-+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~-id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLF-IDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEE-EEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 346999999999999999888 33332 222111 000 0011334455555443 2234579999988
Q ss_pred hhc
Q 005003 359 DAV 361 (720)
Q Consensus 359 D~l 361 (720)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 876
Done!