Query 005003
Match_columns 720
No_of_seqs 668 out of 3908
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.4E-85 4.8E-90 739.7 45.3 445 251-698 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 3.7E-85 1.2E-89 740.2 43.0 476 234-717 9-488 (499)
3 4b4t_J 26S protease regulatory 100.0 3.6E-53 1.2E-57 464.6 28.2 259 245-503 136-395 (405)
4 4b4t_I 26S protease regulatory 100.0 7.6E-54 2.6E-58 471.5 19.3 301 197-502 127-428 (437)
5 4b4t_H 26S protease regulatory 100.0 2E-51 6.7E-56 456.1 27.6 265 240-504 192-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 1.2E-50 4.2E-55 450.3 28.3 257 244-500 168-425 (437)
7 4b4t_M 26S protease regulatory 100.0 5.7E-51 2E-55 452.6 24.8 258 243-500 167-425 (434)
8 4b4t_K 26S protease regulatory 100.0 1.1E-49 3.8E-54 441.9 28.8 255 245-499 160-416 (428)
9 2di4_A Zinc protease, cell div 100.0 1.3E-48 4.5E-53 400.4 15.9 200 499-700 2-203 (238)
10 3cf2_A TER ATPase, transitiona 100.0 1.8E-44 6.3E-49 425.8 10.5 231 250-480 470-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 3.4E-42 1.2E-46 406.5 26.4 275 250-527 197-492 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 2.3E-39 7.7E-44 334.7 28.4 254 248-501 3-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 8.6E-38 2.9E-42 331.9 24.5 248 250-497 8-281 (301)
14 2x8a_A Nuclear valosin-contain 100.0 7.4E-38 2.5E-42 328.9 20.9 247 251-500 4-267 (274)
15 3h4m_A Proteasome-activating n 100.0 9.6E-37 3.3E-41 318.7 26.9 254 248-501 8-262 (285)
16 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.7E-37 1.3E-41 316.8 19.7 253 252-504 1-256 (262)
17 1ixz_A ATP-dependent metallopr 100.0 6.7E-36 2.3E-40 308.2 27.8 246 249-494 8-253 (254)
18 1iy2_A ATP-dependent metallopr 100.0 1.7E-35 5.7E-40 310.0 28.8 259 235-494 19-277 (278)
19 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-35 5.4E-40 317.9 24.7 225 250-480 5-233 (322)
20 3eie_A Vacuolar protein sortin 100.0 8.8E-36 3E-40 319.1 22.2 229 247-481 8-239 (322)
21 3hu3_A Transitional endoplasmi 100.0 1.6E-34 5.6E-39 326.5 25.5 264 252-521 199-480 (489)
22 2qp9_X Vacuolar protein sortin 100.0 2.1E-34 7E-39 313.2 24.1 226 249-480 43-271 (355)
23 2r62_A Cell division protease 100.0 6.7E-37 2.3E-41 317.4 4.3 251 250-500 4-256 (268)
24 2zan_A Vacuolar protein sortin 100.0 4.3E-33 1.5E-37 311.6 23.2 227 248-480 125-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 3.6E-31 1.2E-35 287.7 25.6 245 250-500 77-337 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 1.7E-31 6E-36 280.8 19.9 243 249-497 13-272 (297)
27 1ypw_A Transitional endoplasmi 100.0 8.4E-34 2.9E-38 338.4 -1.8 233 249-481 469-702 (806)
28 3vfd_A Spastin; ATPase, microt 100.0 2.3E-30 8E-35 284.0 24.2 245 247-497 105-365 (389)
29 3t15_A Ribulose bisphosphate c 100.0 4.5E-31 1.5E-35 279.6 8.9 228 285-527 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 6E-28 2.1E-32 288.0 28.1 247 250-499 197-461 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 4.7E-26 1.6E-30 255.3 -0.1 205 251-472 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.2E-22 4.3E-27 214.0 15.5 224 256-491 29-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 3E-22 1E-26 216.2 17.7 252 252-530 39-362 (368)
34 3pfi_A Holliday junction ATP-d 99.9 5.8E-21 2E-25 204.2 23.0 219 246-496 18-253 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 4.4E-20 1.5E-24 195.5 17.4 220 250-497 5-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 5.2E-20 1.8E-24 193.0 16.1 236 257-496 15-298 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1.1E-19 3.6E-24 189.1 16.9 222 255-496 31-263 (272)
38 3m6a_A ATP-dependent protease 99.8 3.9E-20 1.4E-24 211.7 11.8 225 252-496 76-340 (543)
39 3hws_A ATP-dependent CLP prote 99.8 4.7E-19 1.6E-23 192.2 17.5 221 258-480 16-325 (363)
40 1g41_A Heat shock protein HSLU 99.8 2.9E-20 9.8E-25 206.9 6.7 170 257-438 15-190 (444)
41 2z4s_A Chromosomal replication 99.8 1.4E-18 4.9E-23 193.9 18.1 222 251-498 99-333 (440)
42 3u61_B DNA polymerase accessor 99.8 8.7E-19 3E-23 186.4 15.2 209 244-495 13-235 (324)
43 2v1u_A Cell division control p 99.8 3.5E-18 1.2E-22 183.9 18.8 226 253-498 15-277 (387)
44 2chg_A Replication factor C sm 99.8 1.3E-17 4.3E-22 164.3 19.5 206 247-495 7-224 (226)
45 3pvs_A Replication-associated 99.8 4.5E-18 1.5E-22 190.3 16.0 206 250-496 19-243 (447)
46 1l8q_A Chromosomal replication 99.8 1.5E-17 5E-22 177.2 19.1 219 251-497 5-240 (324)
47 2r44_A Uncharacterized protein 99.7 1.2E-17 4.1E-22 178.3 17.1 215 254-501 24-301 (331)
48 1g8p_A Magnesium-chelatase 38 99.7 6.7E-17 2.3E-21 172.6 22.5 223 251-501 18-326 (350)
49 1sxj_A Activator 1 95 kDa subu 99.7 4.3E-18 1.5E-22 193.6 13.2 232 242-497 24-274 (516)
50 1njg_A DNA polymerase III subu 99.7 4.6E-17 1.6E-21 161.9 19.1 207 247-494 13-248 (250)
51 2qby_B CDC6 homolog 3, cell di 99.7 3.3E-17 1.1E-21 177.0 18.1 214 255-498 18-271 (384)
52 3bos_A Putative DNA replicatio 99.7 2.4E-17 8.1E-22 165.5 15.8 206 252-495 23-241 (242)
53 1in4_A RUVB, holliday junction 99.7 1.9E-16 6.4E-21 170.2 23.3 216 250-497 18-250 (334)
54 1um8_A ATP-dependent CLP prote 99.7 3.5E-17 1.2E-21 178.1 16.3 235 257-493 21-361 (376)
55 1jbk_A CLPB protein; beta barr 99.7 1.5E-17 5.3E-22 159.9 10.8 160 252-436 17-194 (195)
56 2qby_A CDC6 homolog 1, cell di 99.7 2E-16 6.9E-21 169.8 19.8 224 253-498 16-273 (386)
57 1sxj_D Activator 1 41 kDa subu 99.7 6.7E-17 2.3E-21 172.6 15.8 213 245-495 25-261 (353)
58 4fcw_A Chaperone protein CLPB; 99.7 5.9E-17 2E-21 170.5 14.3 203 257-478 17-279 (311)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 5.4E-17 1.9E-21 192.3 14.1 223 252-499 181-435 (758)
60 3pxg_A Negative regulator of g 99.7 7.7E-17 2.6E-21 181.2 14.3 207 250-496 173-405 (468)
61 1fnn_A CDC6P, cell division co 99.7 7.5E-16 2.5E-20 166.3 20.8 220 254-498 14-275 (389)
62 2chq_A Replication factor C sm 99.7 2E-16 6.7E-21 166.2 15.7 206 246-494 6-223 (319)
63 2bjv_A PSP operon transcriptio 99.7 5.6E-16 1.9E-20 160.2 15.1 207 254-490 3-250 (265)
64 3pxi_A Negative regulator of g 99.7 5.9E-16 2E-20 183.6 16.4 197 257-477 491-724 (758)
65 3pxi_A Negative regulator of g 99.7 5.8E-16 2E-20 183.7 15.7 191 251-481 174-389 (758)
66 1iqp_A RFCS; clamp loader, ext 99.6 2.3E-15 7.7E-20 158.6 17.9 206 246-494 14-231 (327)
67 1jr3_A DNA polymerase III subu 99.6 2.9E-15 9.8E-20 161.2 18.4 206 248-494 7-241 (373)
68 3te6_A Regulatory protein SIR3 99.6 2.7E-16 9.4E-21 168.2 10.2 159 259-442 22-213 (318)
69 1sxj_B Activator 1 37 kDa subu 99.6 1.9E-15 6.4E-20 159.0 16.4 206 247-495 11-229 (323)
70 1qvr_A CLPB protein; coiled co 99.6 8.4E-16 2.9E-20 184.7 15.1 204 251-480 164-395 (854)
71 2p65_A Hypothetical protein PF 99.6 5.4E-16 1.9E-20 149.2 10.5 153 252-428 17-187 (187)
72 1r6b_X CLPA protein; AAA+, N-t 99.6 9.7E-16 3.3E-20 181.6 14.8 200 257-477 458-715 (758)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 5.7E-16 1.9E-20 175.3 11.6 209 257-497 22-285 (500)
74 1ojl_A Transcriptional regulat 99.6 7.2E-16 2.5E-20 163.9 10.2 201 257-491 2-246 (304)
75 1sxj_C Activator 1 40 kDa subu 99.6 1.3E-14 4.5E-19 155.6 15.0 210 246-494 14-236 (340)
76 3f9v_A Minichromosome maintena 99.6 5.8E-16 2E-20 179.0 3.2 219 257-497 295-587 (595)
77 1qvr_A CLPB protein; coiled co 99.5 1.4E-14 4.7E-19 174.1 12.9 204 256-478 557-820 (854)
78 1sxj_E Activator 1 40 kDa subu 99.5 9.1E-14 3.1E-18 148.9 16.2 196 246-476 3-243 (354)
79 3co5_A Putative two-component 99.5 1.1E-14 3.8E-19 137.4 6.9 132 258-428 5-141 (143)
80 1w5s_A Origin recognition comp 99.5 5.2E-13 1.8E-17 145.2 19.9 227 254-497 19-293 (412)
81 3n70_A Transport activator; si 99.5 3.5E-14 1.2E-18 134.2 7.9 113 257-405 1-116 (145)
82 3k1j_A LON protease, ATP-depen 99.4 1.1E-12 3.6E-17 152.0 14.9 220 249-496 33-374 (604)
83 3cmw_A Protein RECA, recombina 99.4 2.6E-13 9E-18 170.5 10.1 153 251-404 1014-1217(1706)
84 1a5t_A Delta prime, HOLB; zinc 99.4 1E-11 3.4E-16 133.4 17.6 159 288-473 22-208 (334)
85 3kw6_A 26S protease regulatory 99.3 9.2E-12 3.1E-16 105.9 9.6 76 425-500 1-76 (78)
86 1ny5_A Transcriptional regulat 99.3 1.6E-11 5.5E-16 134.7 14.2 209 256-494 136-384 (387)
87 2krk_A 26S protease regulatory 99.3 1.1E-11 3.6E-16 107.8 9.4 78 423-500 7-84 (86)
88 2gno_A DNA polymerase III, gam 99.3 3.8E-11 1.3E-15 127.8 14.5 142 261-440 1-152 (305)
89 3vlf_B 26S protease regulatory 99.2 1.9E-11 6.5E-16 106.6 9.2 78 428-505 2-79 (88)
90 3ec2_A DNA replication protein 99.2 7.5E-11 2.6E-15 114.5 11.5 134 251-405 4-143 (180)
91 4akg_A Glutathione S-transfera 99.2 8.2E-11 2.8E-15 153.9 13.4 138 290-442 1267-1433(2695)
92 2w58_A DNAI, primosome compone 99.0 4.1E-10 1.4E-14 111.1 9.5 103 252-361 20-127 (202)
93 3aji_B S6C, proteasome (prosom 99.0 3.5E-10 1.2E-14 97.1 7.5 74 428-501 2-75 (83)
94 3f8t_A Predicted ATPase involv 99.0 1.3E-09 4.6E-14 121.2 11.5 213 259-499 215-485 (506)
95 3dzd_A Transcriptional regulat 99.0 2.3E-09 8E-14 116.8 12.4 193 257-477 129-361 (368)
96 2dzn_B 26S protease regulatory 98.9 3.1E-10 1.1E-14 97.4 2.9 73 430-502 1-73 (82)
97 2fna_A Conserved hypothetical 98.9 4.1E-08 1.4E-12 103.8 17.6 191 251-472 7-252 (357)
98 2qen_A Walker-type ATPase; unk 98.8 2.3E-07 7.9E-12 97.8 21.0 192 251-471 6-247 (350)
99 2kjq_A DNAA-related protein; s 98.8 9.1E-09 3.1E-13 97.9 9.0 104 290-424 36-145 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.3E-09 4.5E-14 116.3 3.5 121 287-412 120-242 (331)
101 2qgz_A Helicase loader, putati 98.8 4.1E-09 1.4E-13 112.1 6.7 101 253-361 120-226 (308)
102 2r2a_A Uncharacterized protein 98.6 3.7E-08 1.3E-12 98.4 7.4 130 290-432 5-158 (199)
103 4akg_A Glutathione S-transfera 98.6 5.1E-07 1.8E-11 118.6 19.5 166 291-478 646-841 (2695)
104 3cmu_A Protein RECA, recombina 98.5 2.3E-07 7.8E-12 118.5 11.8 117 286-402 1423-1561(2050)
105 1svm_A Large T antigen; AAA+ f 98.5 4.4E-08 1.5E-12 107.1 4.6 120 285-426 164-284 (377)
106 3vkg_A Dynein heavy chain, cyt 98.3 4.4E-06 1.5E-10 110.7 16.4 136 291-440 1305-1469(3245)
107 1jr3_D DNA polymerase III, del 98.2 1.7E-05 5.7E-10 84.7 14.9 177 289-497 17-209 (343)
108 2c9o_A RUVB-like 1; hexameric 98.1 4.8E-06 1.6E-10 92.9 9.8 128 350-497 296-437 (456)
109 1tue_A Replication protein E1; 98.1 1.9E-06 6.6E-11 86.4 4.1 29 291-319 59-87 (212)
110 1ye8_A Protein THEP1, hypothet 98.0 3E-05 1E-09 75.7 11.0 28 292-319 2-29 (178)
111 3vkg_A Dynein heavy chain, cyt 97.9 3.6E-05 1.2E-09 102.2 13.7 126 291-437 605-750 (3245)
112 2cvh_A DNA repair and recombin 97.9 2.1E-05 7.1E-10 77.6 8.1 39 287-325 17-55 (220)
113 2w0m_A SSO2452; RECA, SSPF, un 97.8 4.6E-05 1.6E-09 75.3 9.3 38 287-324 20-60 (235)
114 1u0j_A DNA replication protein 97.8 2.9E-05 9.8E-10 80.9 7.5 26 291-316 105-130 (267)
115 1n0w_A DNA repair protein RAD5 97.8 4.6E-05 1.6E-09 76.3 8.4 117 287-404 21-173 (243)
116 1z6t_A APAF-1, apoptotic prote 97.8 0.00031 1.1E-08 80.1 16.0 168 254-462 121-321 (591)
117 1xp8_A RECA protein, recombina 97.7 7.1E-05 2.4E-09 81.4 9.9 117 286-402 70-208 (366)
118 2ehv_A Hypothetical protein PH 97.7 0.00014 4.7E-09 73.0 11.2 129 287-426 27-207 (251)
119 2zr9_A Protein RECA, recombina 97.7 3.5E-05 1.2E-09 83.3 7.2 78 286-363 57-153 (349)
120 2z43_A DNA repair and recombin 97.7 5.1E-05 1.7E-09 80.8 8.0 116 286-402 103-255 (324)
121 3hr8_A Protein RECA; alpha and 97.7 7.5E-05 2.6E-09 80.9 9.3 115 287-401 58-194 (356)
122 3upu_A ATP-dependent DNA helic 97.7 9.9E-05 3.4E-09 82.3 10.4 67 245-323 12-82 (459)
123 3cmu_A Protein RECA, recombina 97.6 8.7E-05 3E-09 95.2 9.2 118 286-403 728-867 (2050)
124 3sfz_A APAF-1, apoptotic pepti 97.6 0.00088 3E-08 82.2 17.7 172 253-463 120-322 (1249)
125 1u94_A RECA protein, recombina 97.6 0.00014 4.6E-09 78.9 9.1 78 286-363 59-155 (356)
126 1qhx_A CPT, protein (chloramph 97.6 5.7E-05 2E-09 72.2 5.5 40 290-329 3-42 (178)
127 1v5w_A DMC1, meiotic recombina 97.5 0.00014 4.8E-09 78.1 8.5 116 287-403 119-272 (343)
128 4a74_A DNA repair and recombin 97.5 0.00013 4.5E-09 72.2 7.7 39 286-324 21-68 (231)
129 2r8r_A Sensor protein; KDPD, P 97.5 0.0017 5.7E-08 66.0 15.8 162 292-479 8-210 (228)
130 3lda_A DNA repair protein RAD5 97.5 0.00018 6.2E-09 79.1 8.1 118 286-404 174-327 (400)
131 2dr3_A UPF0273 protein PH0284; 97.4 0.00057 2E-08 68.3 10.7 39 286-324 19-60 (247)
132 2orw_A Thymidine kinase; TMTK, 97.4 9.1E-05 3.1E-09 72.6 3.9 68 292-361 5-88 (184)
133 1pzn_A RAD51, DNA repair and r 97.4 0.00034 1.2E-08 75.4 8.6 119 286-405 127-286 (349)
134 2i1q_A DNA repair and recombin 97.3 0.00023 8E-09 75.3 7.0 115 286-401 94-255 (322)
135 3cmw_A Protein RECA, recombina 97.3 0.00015 5.1E-09 92.0 6.3 78 286-363 728-824 (1706)
136 2a5y_B CED-4; apoptosis; HET: 97.3 0.003 1E-07 71.8 15.8 166 260-462 131-330 (549)
137 1gvn_B Zeta; postsegregational 97.3 0.00056 1.9E-08 71.7 8.9 61 263-327 10-70 (287)
138 1g41_A Heat shock protein HSLU 97.3 0.0025 8.7E-08 70.8 14.5 95 337-437 240-346 (444)
139 3io5_A Recombination and repai 97.3 0.00045 1.5E-08 73.7 8.0 110 292-401 30-168 (333)
140 1nlf_A Regulatory protein REPA 97.2 0.00057 2E-08 70.7 8.5 36 290-325 30-78 (279)
141 2b8t_A Thymidine kinase; deoxy 97.2 0.00065 2.2E-08 68.8 8.4 69 292-361 14-101 (223)
142 3trf_A Shikimate kinase, SK; a 97.2 0.00017 5.7E-09 69.5 3.8 39 290-330 5-43 (185)
143 2zts_A Putative uncharacterize 97.2 0.0015 5.2E-08 65.2 10.6 39 286-324 26-68 (251)
144 2p5t_B PEZT; postsegregational 97.2 0.0011 3.7E-08 67.8 9.3 41 287-327 29-69 (253)
145 2rhm_A Putative kinase; P-loop 97.1 0.00034 1.2E-08 67.4 4.8 33 288-320 3-35 (193)
146 3vaa_A Shikimate kinase, SK; s 97.1 0.00026 8.9E-09 69.4 3.8 39 289-329 24-62 (199)
147 2r6a_A DNAB helicase, replicat 97.0 0.0013 4.4E-08 73.2 9.1 39 286-324 199-241 (454)
148 1zp6_A Hypothetical protein AT 97.0 0.0005 1.7E-08 66.3 4.9 40 288-327 7-46 (191)
149 1kag_A SKI, shikimate kinase I 97.0 0.001 3.4E-08 63.1 6.6 37 290-328 4-40 (173)
150 3kb2_A SPBC2 prophage-derived 96.9 0.0005 1.7E-08 64.8 4.1 31 292-322 3-33 (173)
151 2iyv_A Shikimate kinase, SK; t 96.9 0.00042 1.4E-08 66.7 3.6 35 292-328 4-38 (184)
152 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0015 5.2E-08 67.0 7.7 39 290-328 4-45 (260)
153 3iij_A Coilin-interacting nucl 96.9 0.00051 1.7E-08 65.9 3.7 32 290-321 11-42 (180)
154 2q6t_A DNAB replication FORK h 96.9 0.0021 7.2E-08 71.3 9.1 39 286-324 196-238 (444)
155 1ly1_A Polynucleotide kinase; 96.9 0.001 3.5E-08 63.1 5.7 36 290-327 2-38 (181)
156 1cr0_A DNA primase/helicase; R 96.9 0.0016 5.3E-08 67.8 7.5 38 286-323 31-72 (296)
157 1via_A Shikimate kinase; struc 96.8 0.00061 2.1E-08 65.1 3.8 35 292-328 6-40 (175)
158 1y63_A LMAJ004144AAA protein; 96.8 0.00053 1.8E-08 66.4 3.4 31 290-320 10-41 (184)
159 2cdn_A Adenylate kinase; phosp 96.8 0.0007 2.4E-08 66.2 4.2 34 288-321 18-51 (201)
160 3e1s_A Exodeoxyribonuclease V, 96.8 0.0013 4.3E-08 75.7 6.9 96 292-404 206-317 (574)
161 1zuh_A Shikimate kinase; alpha 96.8 0.00063 2.1E-08 64.5 3.6 30 292-321 9-38 (168)
162 1qf9_A UMP/CMP kinase, protein 96.8 0.00082 2.8E-08 64.4 4.4 39 288-328 4-42 (194)
163 2fz4_A DNA repair protein RAD2 96.8 0.0059 2E-07 61.8 10.9 37 292-328 110-147 (237)
164 4gp7_A Metallophosphoesterase; 96.8 0.0005 1.7E-08 66.0 2.7 21 290-310 9-29 (171)
165 1tev_A UMP-CMP kinase; ploop, 96.7 0.00088 3E-08 64.3 4.1 37 290-328 3-39 (196)
166 3bh0_A DNAB-like replicative h 96.7 0.005 1.7E-07 65.1 10.0 39 286-324 64-105 (315)
167 3t61_A Gluconokinase; PSI-biol 96.7 0.00099 3.4E-08 65.2 4.1 31 290-320 18-48 (202)
168 3lw7_A Adenylate kinase relate 96.7 0.00073 2.5E-08 63.3 2.9 29 292-321 3-31 (179)
169 2pez_A Bifunctional 3'-phospho 96.7 0.0015 5E-08 62.7 5.1 37 290-326 5-44 (179)
170 2ius_A DNA translocase FTSK; n 96.7 0.0061 2.1E-07 69.0 10.9 76 350-438 297-375 (512)
171 2c95_A Adenylate kinase 1; tra 96.7 0.00085 2.9E-08 64.7 3.4 37 290-328 9-45 (196)
172 2vli_A Antibiotic resistance p 96.7 0.00086 2.9E-08 64.1 3.4 30 290-319 5-34 (183)
173 2iut_A DNA translocase FTSK; n 96.7 0.0056 1.9E-07 70.0 10.6 74 351-437 345-420 (574)
174 3jvv_A Twitching mobility prot 96.7 0.0021 7E-08 69.6 6.7 96 292-408 125-234 (356)
175 2ze6_A Isopentenyl transferase 96.7 0.001 3.4E-08 68.3 4.1 32 292-323 3-34 (253)
176 3crm_A TRNA delta(2)-isopenten 96.6 0.0011 3.9E-08 70.7 4.4 36 289-324 4-39 (323)
177 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.1E-08 62.4 4.1 36 291-328 3-38 (173)
178 1vma_A Cell division protein F 96.6 0.0074 2.5E-07 63.9 10.5 73 287-359 101-196 (306)
179 1aky_A Adenylate kinase; ATP:A 96.6 0.0013 4.5E-08 65.2 4.3 37 290-328 4-40 (220)
180 2bwj_A Adenylate kinase 5; pho 96.6 0.00096 3.3E-08 64.5 3.2 37 290-328 12-48 (199)
181 1g5t_A COB(I)alamin adenosyltr 96.6 0.0073 2.5E-07 59.9 9.6 115 292-424 30-177 (196)
182 1zd8_A GTP:AMP phosphotransfer 96.6 0.00099 3.4E-08 66.6 3.3 37 290-328 7-43 (227)
183 3cm0_A Adenylate kinase; ATP-b 96.6 0.0011 3.6E-08 63.7 3.4 35 291-327 5-39 (186)
184 3dl0_A Adenylate kinase; phosp 96.6 0.0011 3.7E-08 65.5 3.5 30 292-321 2-31 (216)
185 3fb4_A Adenylate kinase; psych 96.5 0.0012 4E-08 65.1 3.4 30 292-321 2-31 (216)
186 2i3b_A HCR-ntpase, human cance 96.5 0.0048 1.6E-07 60.7 7.7 23 292-314 3-25 (189)
187 3be4_A Adenylate kinase; malar 96.5 0.0015 5.2E-08 64.9 4.1 36 291-328 6-41 (217)
188 3tlx_A Adenylate kinase 2; str 96.5 0.0012 4.2E-08 67.1 3.5 38 289-328 28-65 (243)
189 1ukz_A Uridylate kinase; trans 96.5 0.0013 4.5E-08 64.1 3.6 37 290-328 15-51 (203)
190 2pt5_A Shikimate kinase, SK; a 96.5 0.0013 4.3E-08 62.1 3.3 35 292-328 2-36 (168)
191 3dm5_A SRP54, signal recogniti 96.5 0.019 6.6E-07 63.8 13.3 72 289-360 99-193 (443)
192 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.5E-08 62.9 3.4 25 291-315 4-28 (192)
193 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.5E-08 64.9 4.4 37 290-328 16-52 (233)
194 3umf_A Adenylate kinase; rossm 96.4 0.0018 6.2E-08 65.3 4.2 39 288-328 27-65 (217)
195 1nks_A Adenylate kinase; therm 96.4 0.0019 6.4E-08 61.9 4.0 36 292-327 3-41 (194)
196 1s96_A Guanylate kinase, GMP k 96.4 0.0073 2.5E-07 60.7 8.5 25 291-315 17-41 (219)
197 1jjv_A Dephospho-COA kinase; P 96.4 0.0037 1.3E-07 61.2 6.0 34 291-327 3-36 (206)
198 4eun_A Thermoresistant glucoki 96.4 0.0021 7.3E-08 62.9 4.3 35 290-326 29-63 (200)
199 1zak_A Adenylate kinase; ATP:A 96.4 0.0016 5.3E-08 64.8 3.3 37 290-328 5-41 (222)
200 1knq_A Gluconate kinase; ALFA/ 96.4 0.0022 7.5E-08 61.0 4.2 34 291-326 9-42 (175)
201 3uie_A Adenylyl-sulfate kinase 96.3 0.0035 1.2E-07 61.3 5.1 37 290-326 25-64 (200)
202 2pbr_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 60.4 4.6 31 292-322 2-35 (195)
203 3kl4_A SRP54, signal recogniti 96.2 0.034 1.2E-06 61.6 13.3 72 289-360 96-190 (433)
204 2eyu_A Twitching motility prot 96.2 0.0019 6.6E-08 66.7 3.0 67 292-359 27-108 (261)
205 1e4v_A Adenylate kinase; trans 96.2 0.003 1E-07 62.4 4.1 30 292-321 2-31 (214)
206 2ga8_A Hypothetical 39.9 kDa p 96.2 0.00098 3.3E-08 72.1 0.6 52 261-320 3-54 (359)
207 1tf7_A KAIC; homohexamer, hexa 96.2 0.022 7.5E-07 64.4 11.6 109 287-405 278-417 (525)
208 2v54_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 60.9 4.4 33 290-322 4-37 (204)
209 1vt4_I APAF-1 related killer D 96.1 0.011 3.9E-07 71.8 9.5 43 260-313 131-173 (1221)
210 3sr0_A Adenylate kinase; phosp 96.1 0.0029 1E-07 63.1 3.8 34 293-328 3-36 (206)
211 1w4r_A Thymidine kinase; type 96.1 0.01 3.4E-07 58.9 7.6 69 291-361 21-103 (195)
212 1cke_A CK, MSSA, protein (cyti 96.1 0.0033 1.1E-07 62.2 4.1 35 291-327 6-40 (227)
213 1q57_A DNA primase/helicase; d 96.1 0.013 4.4E-07 65.9 9.4 39 286-324 238-280 (503)
214 2if2_A Dephospho-COA kinase; a 96.1 0.0064 2.2E-07 59.2 6.0 34 292-328 3-36 (204)
215 2ewv_A Twitching motility prot 96.1 0.0044 1.5E-07 67.3 5.2 71 289-359 135-219 (372)
216 2jaq_A Deoxyguanosine kinase; 96.1 0.0031 1.1E-07 60.9 3.6 29 292-320 2-30 (205)
217 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0029 1E-07 67.6 3.6 69 292-360 173-251 (330)
218 1ex7_A Guanylate kinase; subst 96.1 0.006 2.1E-07 59.9 5.5 24 291-314 2-25 (186)
219 2z0h_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 59.7 4.5 30 293-322 3-35 (197)
220 3ake_A Cytidylate kinase; CMP 96.0 0.0043 1.5E-07 60.3 4.4 30 292-321 4-33 (208)
221 1uj2_A Uridine-cytidine kinase 96.0 0.0052 1.8E-07 62.5 5.1 40 289-328 21-68 (252)
222 2bbw_A Adenylate kinase 4, AK4 96.0 0.0042 1.4E-07 62.8 4.3 31 290-320 27-57 (246)
223 2xb4_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 62.3 3.8 35 292-328 2-36 (223)
224 1uf9_A TT1252 protein; P-loop, 95.9 0.0049 1.7E-07 59.6 4.3 37 290-329 8-44 (203)
225 3bgw_A DNAB-like replicative h 95.9 0.014 4.9E-07 64.8 8.4 39 286-324 193-234 (444)
226 2grj_A Dephospho-COA kinase; T 95.9 0.0093 3.2E-07 58.7 6.1 39 292-332 14-52 (192)
227 2plr_A DTMP kinase, probable t 95.8 0.0069 2.4E-07 58.8 4.8 31 290-320 4-36 (213)
228 3gmt_A Adenylate kinase; ssgci 95.8 0.023 7.8E-07 57.7 8.8 35 292-328 10-44 (230)
229 2qor_A Guanylate kinase; phosp 95.8 0.0076 2.6E-07 59.1 5.0 27 289-315 11-37 (204)
230 1tf7_A KAIC; homohexamer, hexa 95.8 0.034 1.2E-06 62.8 11.1 111 289-408 38-188 (525)
231 1w36_D RECD, exodeoxyribonucle 95.8 0.027 9.3E-07 65.0 10.4 22 292-313 166-187 (608)
232 2px0_A Flagellar biosynthesis 95.8 0.034 1.2E-06 58.4 10.2 37 289-325 104-144 (296)
233 2wwf_A Thymidilate kinase, put 95.8 0.0027 9.1E-08 62.1 1.6 28 290-317 10-37 (212)
234 3r20_A Cytidylate kinase; stru 95.7 0.0061 2.1E-07 62.1 4.2 35 290-326 9-43 (233)
235 2yvu_A Probable adenylyl-sulfa 95.7 0.0098 3.3E-07 57.2 5.4 37 290-326 13-52 (186)
236 3tau_A Guanylate kinase, GMP k 95.7 0.0086 3E-07 59.1 5.0 26 290-315 8-33 (208)
237 4a1f_A DNAB helicase, replicat 95.7 0.031 1E-06 60.0 9.5 38 286-323 42-82 (338)
238 3nwj_A ATSK2; P loop, shikimat 95.6 0.0052 1.8E-07 63.1 3.3 30 292-321 50-79 (250)
239 1m7g_A Adenylylsulfate kinase; 95.6 0.0079 2.7E-07 59.3 4.5 38 290-327 25-66 (211)
240 3b6e_A Interferon-induced heli 95.6 0.035 1.2E-06 53.8 9.1 22 292-313 50-71 (216)
241 1nn5_A Similar to deoxythymidy 95.6 0.0035 1.2E-07 61.3 1.8 26 290-315 9-34 (215)
242 1ltq_A Polynucleotide kinase; 95.6 0.011 3.7E-07 61.3 5.6 36 290-327 2-38 (301)
243 1kgd_A CASK, peripheral plasma 95.6 0.011 3.8E-07 56.8 5.3 25 290-314 5-29 (180)
244 2axn_A 6-phosphofructo-2-kinas 95.4 0.033 1.1E-06 63.2 9.2 41 290-330 35-78 (520)
245 2h92_A Cytidylate kinase; ross 95.4 0.0096 3.3E-07 58.6 4.2 31 290-320 3-33 (219)
246 3ney_A 55 kDa erythrocyte memb 95.4 0.02 6.8E-07 56.8 6.4 26 289-314 18-43 (197)
247 2qt1_A Nicotinamide riboside k 95.4 0.0069 2.4E-07 59.3 3.1 34 291-326 22-56 (207)
248 1vht_A Dephospho-COA kinase; s 95.4 0.0094 3.2E-07 58.8 4.1 36 290-328 4-39 (218)
249 3a8t_A Adenylate isopentenyltr 95.4 0.0072 2.5E-07 64.8 3.4 35 290-324 40-74 (339)
250 3thx_B DNA mismatch repair pro 95.4 0.039 1.3E-06 66.6 10.1 108 290-409 673-800 (918)
251 1xx6_A Thymidine kinase; NESG, 95.4 0.033 1.1E-06 54.8 7.9 70 291-361 9-93 (191)
252 3c8u_A Fructokinase; YP_612366 95.3 0.023 7.7E-07 55.9 6.6 26 290-315 22-47 (208)
253 3zvl_A Bifunctional polynucleo 95.3 0.021 7E-07 62.8 6.8 36 289-326 257-292 (416)
254 3foz_A TRNA delta(2)-isopenten 95.3 0.0092 3.1E-07 63.3 3.8 35 289-323 9-43 (316)
255 1q3t_A Cytidylate kinase; nucl 95.3 0.012 4E-07 59.1 4.4 36 290-327 16-51 (236)
256 2j41_A Guanylate kinase; GMP, 95.2 0.011 3.7E-07 57.4 3.7 26 289-314 5-30 (207)
257 1rz3_A Hypothetical protein rb 95.2 0.035 1.2E-06 54.3 7.3 37 290-326 22-61 (201)
258 4e22_A Cytidylate kinase; P-lo 95.2 0.014 4.7E-07 59.6 4.5 28 292-319 29-56 (252)
259 2bdt_A BH3686; alpha-beta prot 95.1 0.016 5.5E-07 55.7 4.6 35 292-327 4-38 (189)
260 2gxq_A Heat resistant RNA depe 95.1 0.087 3E-06 50.8 9.8 17 291-307 39-55 (207)
261 1x6v_B Bifunctional 3'-phospho 95.1 0.033 1.1E-06 64.5 7.8 37 290-326 52-91 (630)
262 2f6r_A COA synthase, bifunctio 95.0 0.013 4.5E-07 60.9 4.0 36 290-328 75-110 (281)
263 3llm_A ATP-dependent RNA helic 94.9 0.11 3.9E-06 51.8 10.3 21 291-311 77-97 (235)
264 3d3q_A TRNA delta(2)-isopenten 94.8 0.014 4.9E-07 62.6 3.7 32 291-322 8-39 (340)
265 1t6n_A Probable ATP-dependent 94.8 0.51 1.7E-05 46.0 14.7 58 254-313 14-74 (220)
266 3fdi_A Uncharacterized protein 94.8 0.018 6E-07 57.0 4.0 29 292-320 8-36 (201)
267 3asz_A Uridine kinase; cytidin 94.7 0.015 5.1E-07 56.9 3.3 26 290-315 6-31 (211)
268 2oap_1 GSPE-2, type II secreti 94.6 0.015 5.2E-07 65.8 3.3 69 291-359 261-343 (511)
269 1p9r_A General secretion pathw 94.6 0.063 2.1E-06 59.2 8.2 94 253-359 143-246 (418)
270 3exa_A TRNA delta(2)-isopenten 94.6 0.019 6.7E-07 61.0 3.9 33 291-323 4-36 (322)
271 2qmh_A HPR kinase/phosphorylas 94.6 0.016 5.3E-07 57.8 2.9 31 290-321 34-64 (205)
272 1lvg_A Guanylate kinase, GMP k 94.6 0.025 8.6E-07 55.4 4.4 25 290-314 4-28 (198)
273 1zu4_A FTSY; GTPase, signal re 94.6 0.067 2.3E-06 56.8 8.0 38 287-324 102-142 (320)
274 3thx_A DNA mismatch repair pro 94.6 0.073 2.5E-06 64.4 9.2 22 291-312 663-684 (934)
275 3a00_A Guanylate kinase, GMP k 94.5 0.019 6.7E-07 55.3 3.5 24 291-314 2-25 (186)
276 3tr0_A Guanylate kinase, GMP k 94.5 0.021 7E-07 55.3 3.6 24 291-314 8-31 (205)
277 1hv8_A Putative ATP-dependent 94.5 0.19 6.6E-06 52.3 11.2 68 254-323 6-82 (367)
278 2xxa_A Signal recognition part 94.4 0.11 3.9E-06 57.3 9.8 71 288-358 98-192 (433)
279 4b3f_X DNA-binding protein smu 94.3 0.16 5.5E-06 58.8 11.3 34 292-325 207-243 (646)
280 2yhs_A FTSY, cell division pro 94.2 0.14 5E-06 57.5 9.9 36 287-322 290-328 (503)
281 1wb9_A DNA mismatch repair pro 94.1 0.15 5E-06 60.8 10.4 23 291-313 608-630 (800)
282 3lnc_A Guanylate kinase, GMP k 94.1 0.028 9.6E-07 56.0 3.7 25 290-314 27-52 (231)
283 2j37_W Signal recognition part 94.1 0.093 3.2E-06 59.2 8.3 36 288-323 99-137 (504)
284 1c9k_A COBU, adenosylcobinamid 94.0 0.033 1.1E-06 54.5 3.8 32 293-325 2-33 (180)
285 2v3c_C SRP54, signal recogniti 94.0 0.048 1.7E-06 60.3 5.6 36 289-324 98-136 (432)
286 3e70_C DPA, signal recognition 94.0 0.12 4.2E-06 55.0 8.6 27 288-314 127-153 (328)
287 3lxw_A GTPase IMAP family memb 94.0 0.27 9.3E-06 49.7 10.8 24 291-314 22-45 (247)
288 3eph_A TRNA isopentenyltransfe 93.9 0.027 9.4E-07 61.8 3.4 33 290-322 2-34 (409)
289 3bor_A Human initiation factor 93.9 0.12 4E-06 51.7 7.8 55 252-308 28-85 (237)
290 1ls1_A Signal recognition part 93.9 0.11 3.8E-06 54.4 7.9 73 289-361 97-192 (295)
291 1qde_A EIF4A, translation init 93.8 0.38 1.3E-05 47.0 11.3 52 253-306 13-67 (224)
292 1vec_A ATP-dependent RNA helic 93.8 0.31 1.1E-05 46.9 10.5 18 291-308 41-58 (206)
293 2j9r_A Thymidine kinase; TK1, 93.8 0.11 3.7E-06 52.2 7.2 30 293-322 31-63 (214)
294 2pl3_A Probable ATP-dependent 93.8 0.2 7E-06 49.5 9.3 53 253-307 24-79 (236)
295 1odf_A YGR205W, hypothetical 3 93.8 0.034 1.2E-06 58.2 3.7 40 288-327 29-74 (290)
296 1z6g_A Guanylate kinase; struc 93.7 0.033 1.1E-06 55.4 3.4 24 291-314 24-47 (218)
297 3p32_A Probable GTPase RV1496/ 93.7 0.27 9.2E-06 52.6 10.8 33 291-323 80-115 (355)
298 1m8p_A Sulfate adenylyltransfe 93.7 0.11 3.6E-06 59.7 8.0 39 290-328 396-438 (573)
299 1bif_A 6-phosphofructo-2-kinas 93.7 0.15 5.2E-06 56.7 9.0 40 290-329 39-81 (469)
300 1j8m_F SRP54, signal recogniti 93.7 0.15 5.2E-06 53.5 8.4 70 290-359 98-190 (297)
301 3fe2_A Probable ATP-dependent 93.7 0.11 3.9E-06 51.8 7.3 56 251-308 26-84 (242)
302 2oxc_A Probable ATP-dependent 93.6 0.28 9.5E-06 48.6 10.0 55 251-307 21-78 (230)
303 3iuy_A Probable ATP-dependent 93.6 0.16 5.6E-06 50.0 8.2 57 250-308 15-75 (228)
304 1htw_A HI0065; nucleotide-bind 93.5 0.047 1.6E-06 52.0 3.8 23 292-314 35-57 (158)
305 1znw_A Guanylate kinase, GMP k 93.4 0.043 1.5E-06 53.8 3.6 24 292-315 22-45 (207)
306 3hdt_A Putative kinase; struct 93.4 0.04 1.4E-06 55.5 3.4 29 292-320 16-44 (223)
307 3b9q_A Chloroplast SRP recepto 93.4 0.084 2.9E-06 55.5 6.0 28 287-314 97-124 (302)
308 2xau_A PRE-mRNA-splicing facto 93.4 0.15 5E-06 60.6 8.7 23 291-313 110-132 (773)
309 1a7j_A Phosphoribulokinase; tr 93.4 0.032 1.1E-06 58.4 2.7 36 292-327 7-45 (290)
310 2ffh_A Protein (FFH); SRP54, s 93.4 0.31 1.1E-05 53.7 10.7 36 289-324 97-135 (425)
311 1gtv_A TMK, thymidylate kinase 93.3 0.023 7.7E-07 55.4 1.4 24 292-315 2-25 (214)
312 2jeo_A Uridine-cytidine kinase 93.3 0.046 1.6E-06 55.2 3.7 26 292-317 27-52 (245)
313 2p6r_A Afuhel308 helicase; pro 93.3 0.2 7E-06 58.3 9.6 33 291-323 41-76 (702)
314 2lna_A AFG3-like protein 2; st 93.2 0.2 6.7E-06 44.2 7.1 63 118-182 14-77 (99)
315 4eaq_A DTMP kinase, thymidylat 93.1 0.077 2.6E-06 53.4 4.9 32 290-321 26-59 (229)
316 3tqc_A Pantothenate kinase; bi 93.0 0.18 6.2E-06 53.6 7.8 39 288-326 90-133 (321)
317 2v9p_A Replication protein E1; 93.0 0.056 1.9E-06 57.1 3.8 27 288-314 124-150 (305)
318 2zj8_A DNA helicase, putative 92.9 0.23 7.8E-06 58.1 9.4 33 290-322 39-75 (720)
319 3cr8_A Sulfate adenylyltranfer 92.7 0.17 5.7E-06 57.8 7.5 39 290-328 369-411 (552)
320 4a82_A Cystic fibrosis transme 92.7 0.27 9.2E-06 56.2 9.3 24 291-314 368-391 (578)
321 2orv_A Thymidine kinase; TP4A 92.7 0.32 1.1E-05 49.4 8.7 90 292-404 21-125 (234)
322 1ewq_A DNA mismatch repair pro 92.6 0.22 7.6E-06 59.0 8.7 23 290-312 576-598 (765)
323 2og2_A Putative signal recogni 92.6 0.12 4.1E-06 55.8 5.9 28 287-314 154-181 (359)
324 3tqf_A HPR(Ser) kinase; transf 92.6 0.078 2.7E-06 51.7 3.9 24 290-313 16-39 (181)
325 1s2m_A Putative ATP-dependent 92.5 0.4 1.4E-05 51.0 9.8 58 252-311 19-79 (400)
326 2gza_A Type IV secretion syste 92.5 0.097 3.3E-06 56.4 4.9 69 291-359 176-262 (361)
327 1sky_E F1-ATPase, F1-ATP synth 92.4 0.11 3.8E-06 58.0 5.5 23 292-314 153-175 (473)
328 2ged_A SR-beta, signal recogni 92.4 0.11 3.9E-06 49.2 4.8 25 290-314 48-72 (193)
329 2va8_A SSO2462, SKI2-type heli 92.4 0.23 8E-06 57.8 8.4 34 290-323 46-83 (715)
330 1xti_A Probable ATP-dependent 92.3 0.76 2.6E-05 48.4 11.7 56 255-312 9-67 (391)
331 3vkw_A Replicase large subunit 92.3 0.22 7.6E-06 55.2 7.6 23 291-313 162-184 (446)
332 2ocp_A DGK, deoxyguanosine kin 92.3 0.083 2.8E-06 53.0 3.8 26 290-315 2-27 (241)
333 3e2i_A Thymidine kinase; Zn-bi 92.2 0.14 4.9E-06 51.4 5.4 68 293-361 31-113 (219)
334 4i1u_A Dephospho-COA kinase; s 92.2 0.14 4.9E-06 51.1 5.4 37 292-331 11-47 (210)
335 2z0m_A 337AA long hypothetical 92.2 0.29 1E-05 50.3 8.1 33 291-323 32-64 (337)
336 1q0u_A Bstdead; DEAD protein, 92.2 0.35 1.2E-05 47.3 8.3 18 291-308 42-59 (219)
337 1wp9_A ATP-dependent RNA helic 92.2 0.36 1.2E-05 51.8 9.0 33 292-324 25-61 (494)
338 1p5z_B DCK, deoxycytidine kina 92.1 0.044 1.5E-06 55.8 1.5 30 290-319 24-54 (263)
339 2j0s_A ATP-dependent RNA helic 92.1 0.75 2.6E-05 49.0 11.3 56 253-310 36-94 (410)
340 1sq5_A Pantothenate kinase; P- 92.0 0.15 5E-06 53.5 5.5 26 290-315 80-105 (308)
341 3qf4_B Uncharacterized ABC tra 91.9 0.36 1.2E-05 55.5 9.1 24 291-314 382-405 (598)
342 2gks_A Bifunctional SAT/APS ki 91.9 0.32 1.1E-05 55.3 8.6 39 290-328 372-413 (546)
343 4f4c_A Multidrug resistance pr 91.8 0.14 4.7E-06 64.4 5.9 32 283-314 435-468 (1321)
344 3qf4_A ABC transporter, ATP-bi 91.8 0.26 9E-06 56.5 7.7 24 291-314 370-393 (587)
345 3j16_B RLI1P; ribosome recycli 91.7 0.27 9.3E-06 56.7 7.7 109 287-409 100-285 (608)
346 2o8b_B DNA mismatch repair pro 91.7 0.32 1.1E-05 59.4 8.8 20 291-310 790-809 (1022)
347 3i5x_A ATP-dependent RNA helic 91.7 0.4 1.4E-05 53.9 9.1 17 290-306 111-127 (563)
348 3aez_A Pantothenate kinase; tr 91.7 0.1 3.4E-06 55.2 3.8 26 289-314 89-114 (312)
349 2fwr_A DNA repair protein RAD2 91.7 0.35 1.2E-05 53.1 8.3 36 292-327 110-146 (472)
350 3pey_A ATP-dependent RNA helic 91.6 0.81 2.8E-05 48.0 10.8 21 290-310 44-64 (395)
351 3sqw_A ATP-dependent RNA helic 91.4 0.41 1.4E-05 54.3 8.8 56 251-306 14-76 (579)
352 1np6_A Molybdopterin-guanine d 91.4 0.11 3.9E-06 50.2 3.5 25 290-314 6-30 (174)
353 1gm5_A RECG; helicase, replica 91.4 0.87 3E-05 54.1 11.8 52 263-323 371-425 (780)
354 3tbk_A RIG-I helicase domain; 91.4 1.7 5.7E-05 48.0 13.6 34 291-324 20-61 (555)
355 3tif_A Uncharacterized ABC tra 91.3 0.076 2.6E-06 53.7 2.3 23 292-314 33-55 (235)
356 2onk_A Molybdate/tungstate ABC 91.3 0.088 3E-06 53.5 2.8 24 291-314 25-48 (240)
357 2cbz_A Multidrug resistance-as 91.3 0.078 2.7E-06 53.7 2.3 24 291-314 32-55 (237)
358 2qm8_A GTPase/ATPase; G protei 91.3 0.47 1.6E-05 50.5 8.5 23 292-314 57-79 (337)
359 2pcj_A ABC transporter, lipopr 91.2 0.071 2.4E-06 53.5 1.9 23 292-314 32-54 (224)
360 4a2p_A RIG-I, retinoic acid in 91.1 1.2 4.1E-05 49.4 12.1 32 292-323 24-63 (556)
361 3def_A T7I23.11 protein; chlor 91.1 0.53 1.8E-05 47.8 8.5 24 291-314 37-60 (262)
362 3h1t_A Type I site-specific re 91.1 0.25 8.5E-06 56.2 6.6 45 259-313 177-221 (590)
363 1g8f_A Sulfate adenylyltransfe 91.0 0.13 4.4E-06 58.1 4.0 27 290-316 395-421 (511)
364 1rj9_A FTSY, signal recognitio 91.0 0.13 4.3E-06 54.3 3.7 26 289-314 101-126 (304)
365 4edh_A DTMP kinase, thymidylat 91.0 0.2 6.9E-06 49.9 5.0 32 291-322 7-41 (213)
366 3kta_A Chromosome segregation 90.9 0.14 4.7E-06 48.6 3.6 24 292-315 28-51 (182)
367 3b85_A Phosphate starvation-in 90.9 0.084 2.9E-06 52.5 2.1 22 292-313 24-45 (208)
368 1wrb_A DJVLGB; RNA helicase, D 90.8 0.38 1.3E-05 48.2 6.9 18 291-308 61-78 (253)
369 1xjc_A MOBB protein homolog; s 90.8 0.23 7.7E-06 48.0 4.9 32 291-322 5-39 (169)
370 3q72_A GTP-binding protein RAD 90.7 0.13 4.4E-06 47.3 3.0 21 292-312 4-24 (166)
371 1mv5_A LMRA, multidrug resista 90.7 0.093 3.2E-06 53.2 2.2 23 292-314 30-52 (243)
372 1b0u_A Histidine permease; ABC 90.6 0.096 3.3E-06 53.9 2.3 23 292-314 34-56 (262)
373 3eiq_A Eukaryotic initiation f 90.6 1.3 4.4E-05 47.0 11.3 53 254-308 40-95 (414)
374 2p67_A LAO/AO transport system 90.5 0.52 1.8E-05 50.1 8.0 25 290-314 56-80 (341)
375 2f9l_A RAB11B, member RAS onco 90.4 0.14 4.6E-06 49.3 3.1 23 292-314 7-29 (199)
376 1g6h_A High-affinity branched- 90.4 0.098 3.4E-06 53.5 2.2 23 292-314 35-57 (257)
377 2wsm_A Hydrogenase expression/ 90.4 0.24 8.1E-06 48.3 4.8 24 291-314 31-54 (221)
378 1oix_A RAS-related protein RAB 90.4 0.13 4.5E-06 49.3 3.0 23 292-314 31-53 (191)
379 2d2e_A SUFC protein; ABC-ATPas 90.3 0.12 4E-06 52.8 2.6 22 292-313 31-52 (250)
380 2pze_A Cystic fibrosis transme 90.3 0.1 3.5E-06 52.5 2.1 24 291-314 35-58 (229)
381 2ghi_A Transport protein; mult 90.3 0.11 3.7E-06 53.4 2.3 24 291-314 47-70 (260)
382 2zu0_C Probable ATP-dependent 90.3 0.13 4.3E-06 53.1 2.8 22 292-313 48-69 (267)
383 3v9p_A DTMP kinase, thymidylat 90.3 0.17 5.8E-06 51.1 3.7 31 292-322 27-64 (227)
384 1sgw_A Putative ABC transporte 90.2 0.099 3.4E-06 52.2 1.9 23 292-314 37-59 (214)
385 1fuu_A Yeast initiation factor 90.2 0.89 3E-05 47.9 9.5 54 252-307 19-75 (394)
386 2olj_A Amino acid ABC transpor 90.1 0.11 3.8E-06 53.5 2.3 23 292-314 52-74 (263)
387 3lxx_A GTPase IMAP family memb 90.1 0.42 1.4E-05 47.5 6.5 22 292-313 31-52 (239)
388 1ji0_A ABC transporter; ATP bi 90.1 0.11 3.6E-06 52.7 2.1 23 292-314 34-56 (240)
389 2ixe_A Antigen peptide transpo 90.1 0.11 3.9E-06 53.6 2.3 23 292-314 47-69 (271)
390 2ff7_A Alpha-hemolysin translo 90.1 0.11 3.6E-06 53.0 2.1 23 292-314 37-59 (247)
391 3ly5_A ATP-dependent RNA helic 90.1 0.44 1.5E-05 48.4 6.7 18 291-308 92-109 (262)
392 1lw7_A Transcriptional regulat 90.0 0.15 5.1E-06 54.6 3.3 27 290-316 170-196 (365)
393 3fvq_A Fe(3+) IONS import ATP- 89.9 0.13 4.5E-06 55.5 2.7 23 292-314 32-54 (359)
394 3gfo_A Cobalt import ATP-bindi 89.9 0.11 3.8E-06 53.9 2.1 23 292-314 36-58 (275)
395 2qi9_C Vitamin B12 import ATP- 89.8 0.12 4E-06 52.9 2.1 24 292-315 28-51 (249)
396 2yz2_A Putative ABC transporte 89.8 0.13 4.3E-06 53.1 2.3 23 292-314 35-57 (266)
397 1vpl_A ABC transporter, ATP-bi 89.7 0.13 4.3E-06 52.9 2.3 23 292-314 43-65 (256)
398 2dyk_A GTP-binding protein; GT 89.7 0.18 6.1E-06 46.0 3.1 23 292-314 3-25 (161)
399 3ice_A Transcription terminati 89.7 1.8 6.1E-05 47.4 11.3 30 292-321 176-210 (422)
400 1z2a_A RAS-related protein RAB 89.7 0.17 5.9E-06 46.3 3.0 22 292-313 7-28 (168)
401 2i4i_A ATP-dependent RNA helic 89.6 1.1 3.8E-05 47.7 9.8 53 252-306 13-68 (417)
402 4g1u_C Hemin import ATP-bindin 89.6 0.12 3.9E-06 53.4 1.9 23 292-314 39-61 (266)
403 3sop_A Neuronal-specific septi 89.6 0.17 5.7E-06 52.3 3.1 23 292-314 4-26 (270)
404 3l9o_A ATP-dependent RNA helic 89.5 1.5 5.3E-05 53.9 12.1 32 292-323 201-235 (1108)
405 2nq2_C Hypothetical ABC transp 89.5 0.13 4.3E-06 52.7 2.1 23 292-314 33-55 (253)
406 3d31_A Sulfate/molybdate ABC t 89.5 0.14 4.8E-06 55.1 2.5 23 292-314 28-50 (348)
407 2f7s_A C25KG, RAS-related prot 89.5 1.2 4.2E-05 42.9 9.1 22 292-313 27-48 (217)
408 2ihy_A ABC transporter, ATP-bi 89.4 0.13 4.3E-06 53.5 2.1 23 292-314 49-71 (279)
409 3tmk_A Thymidylate kinase; pho 89.4 0.33 1.1E-05 48.6 5.0 29 291-319 6-34 (216)
410 2yyz_A Sugar ABC transporter, 89.4 0.16 5.4E-06 54.9 2.9 23 292-314 31-53 (359)
411 1nrj_B SR-beta, signal recogni 89.4 0.22 7.6E-06 48.3 3.7 24 291-314 13-36 (218)
412 2it1_A 362AA long hypothetical 89.4 0.16 5.4E-06 54.9 2.8 23 292-314 31-53 (362)
413 1z47_A CYSA, putative ABC-tran 89.3 0.15 5.2E-06 54.9 2.6 23 292-314 43-65 (355)
414 3rlf_A Maltose/maltodextrin im 89.3 0.16 5.6E-06 55.2 2.8 23 292-314 31-53 (381)
415 2f1r_A Molybdopterin-guanine d 89.2 0.15 5.1E-06 49.1 2.3 23 292-314 4-26 (171)
416 1v43_A Sugar-binding transport 89.2 0.16 5.6E-06 55.0 2.8 23 292-314 39-61 (372)
417 3ber_A Probable ATP-dependent 89.2 0.89 3E-05 45.7 8.1 18 291-308 81-98 (249)
418 2wji_A Ferrous iron transport 89.1 0.17 5.9E-06 47.0 2.6 22 292-313 5-26 (165)
419 1kao_A RAP2A; GTP-binding prot 89.1 0.21 7.2E-06 45.5 3.1 22 292-313 5-26 (167)
420 2db3_A ATP-dependent RNA helic 89.1 1.3 4.5E-05 48.2 10.0 53 252-306 54-109 (434)
421 2ce2_X GTPase HRAS; signaling 89.0 0.2 7E-06 45.4 3.0 23 292-314 5-27 (166)
422 3dz8_A RAS-related protein RAB 89.0 1 3.5E-05 42.6 8.0 23 292-314 25-47 (191)
423 2zej_A Dardarin, leucine-rich 89.0 0.15 5.1E-06 48.4 2.1 22 292-313 4-25 (184)
424 3lv8_A DTMP kinase, thymidylat 89.0 0.22 7.5E-06 50.5 3.4 32 290-321 27-62 (236)
425 2v6i_A RNA helicase; membrane, 88.9 0.77 2.6E-05 50.3 8.0 33 291-323 3-39 (431)
426 1g29_1 MALK, maltose transport 88.9 0.17 5.7E-06 54.9 2.6 23 292-314 31-53 (372)
427 2gk6_A Regulator of nonsense t 88.8 0.18 6.3E-06 58.1 3.0 33 292-324 197-233 (624)
428 3ux8_A Excinuclease ABC, A sub 88.7 0.51 1.7E-05 54.9 6.7 19 292-310 350-368 (670)
429 1u8z_A RAS-related protein RAL 88.7 0.23 8E-06 45.2 3.1 23 291-313 5-27 (168)
430 3fmo_B ATP-dependent RNA helic 88.7 0.93 3.2E-05 47.1 8.1 18 290-307 131-148 (300)
431 1oxx_K GLCV, glucose, ABC tran 88.7 0.14 4.9E-06 55.0 1.9 23 292-314 33-55 (353)
432 1ek0_A Protein (GTP-binding pr 88.7 0.23 7.9E-06 45.4 3.1 23 292-314 5-27 (170)
433 2pjz_A Hypothetical protein ST 88.6 0.17 5.7E-06 52.2 2.3 23 292-314 32-54 (263)
434 2hf9_A Probable hydrogenase ni 88.6 0.43 1.5E-05 46.6 5.2 24 291-314 39-62 (226)
435 2nzj_A GTP-binding protein REM 88.6 0.2 6.7E-06 46.3 2.6 22 292-313 6-27 (175)
436 1z0j_A RAB-22, RAS-related pro 88.5 0.24 8.2E-06 45.4 3.1 23 292-314 8-30 (170)
437 4f4c_A Multidrug resistance pr 88.4 0.37 1.3E-05 60.5 5.7 23 291-313 1106-1128(1321)
438 1g16_A RAS-related protein SEC 88.3 0.24 8.2E-06 45.4 3.0 22 292-313 5-26 (170)
439 2wjg_A FEOB, ferrous iron tran 88.3 0.22 7.6E-06 46.8 2.8 22 292-313 9-30 (188)
440 1wms_A RAB-9, RAB9, RAS-relate 88.3 0.25 8.6E-06 45.8 3.1 22 292-313 9-30 (177)
441 3dkp_A Probable ATP-dependent 88.3 1.1 3.9E-05 44.3 8.1 17 291-307 67-83 (245)
442 1z08_A RAS-related protein RAB 88.2 0.25 8.7E-06 45.3 3.1 22 292-313 8-29 (170)
443 1svi_A GTP-binding protein YSX 88.2 0.2 6.9E-06 47.4 2.4 23 291-313 24-46 (195)
444 3t34_A Dynamin-related protein 88.2 0.76 2.6E-05 49.0 7.2 26 287-313 32-57 (360)
445 2erx_A GTP-binding protein DI- 88.1 0.24 8.1E-06 45.4 2.8 22 292-313 5-26 (172)
446 1ky3_A GTP-binding protein YPT 88.1 0.26 9E-06 45.7 3.1 23 291-313 9-31 (182)
447 3gd7_A Fusion complex of cysti 88.1 0.21 7.2E-06 54.5 2.7 22 292-313 49-70 (390)
448 1r2q_A RAS-related protein RAB 88.0 0.27 9.3E-06 44.9 3.1 22 292-313 8-29 (170)
449 2bbs_A Cystic fibrosis transme 87.9 0.19 6.5E-06 52.6 2.2 32 283-314 55-88 (290)
450 3q85_A GTP-binding protein REM 87.9 0.23 8E-06 45.6 2.6 21 292-312 4-24 (169)
451 1c1y_A RAS-related protein RAP 87.9 0.28 9.6E-06 44.8 3.1 22 292-313 5-26 (167)
452 2lkc_A Translation initiation 87.9 0.31 1.1E-05 45.2 3.5 23 291-313 9-31 (178)
453 2hxs_A RAB-26, RAS-related pro 87.9 0.27 9.3E-06 45.6 3.1 22 292-313 8-29 (178)
454 3bc1_A RAS-related protein RAB 87.8 0.28 9.5E-06 46.0 3.1 23 291-313 12-34 (195)
455 2vp4_A Deoxynucleoside kinase; 87.7 0.31 1.1E-05 48.5 3.6 30 291-321 21-50 (230)
456 1r8s_A ADP-ribosylation factor 87.7 0.29 1E-05 44.7 3.1 22 292-313 2-23 (164)
457 1upt_A ARL1, ADP-ribosylation 87.7 0.36 1.2E-05 44.3 3.8 23 291-313 8-30 (171)
458 3fmp_B ATP-dependent RNA helic 87.6 1.7 5.9E-05 47.6 9.8 18 290-307 131-148 (479)
459 2atv_A RERG, RAS-like estrogen 87.5 0.33 1.1E-05 46.3 3.5 23 291-313 29-51 (196)
460 3ch4_B Pmkase, phosphomevalona 87.5 0.54 1.9E-05 46.7 5.1 41 287-327 8-49 (202)
461 2y8e_A RAB-protein 6, GH09086P 87.5 0.29 9.9E-06 45.2 3.0 22 292-313 16-37 (179)
462 3ld9_A DTMP kinase, thymidylat 87.5 0.33 1.1E-05 48.8 3.6 31 290-320 21-55 (223)
463 4a2q_A RIG-I, retinoic acid in 87.4 3.2 0.00011 49.0 12.5 33 291-323 264-304 (797)
464 1fzq_A ADP-ribosylation factor 87.4 0.79 2.7E-05 43.2 6.0 23 291-313 17-39 (181)
465 1z0f_A RAB14, member RAS oncog 87.3 0.31 1.1E-05 45.0 3.1 23 292-314 17-39 (179)
466 3nh6_A ATP-binding cassette SU 87.3 0.2 6.9E-06 52.8 1.9 24 291-314 81-104 (306)
467 3t1o_A Gliding protein MGLA; G 87.1 0.32 1.1E-05 45.7 3.1 23 292-314 16-38 (198)
468 4dsu_A GTPase KRAS, isoform 2B 87.1 0.32 1.1E-05 45.5 3.1 23 292-314 6-28 (189)
469 2fn4_A P23, RAS-related protei 87.1 0.31 1.1E-05 45.1 3.0 22 292-313 11-32 (181)
470 1tq4_A IIGP1, interferon-induc 87.1 0.38 1.3E-05 52.8 4.1 22 292-313 71-92 (413)
471 3con_A GTPase NRAS; structural 87.0 0.33 1.1E-05 45.8 3.1 23 292-314 23-45 (190)
472 1c4o_A DNA nucleotide excision 87.0 2.9 0.0001 48.5 11.8 34 292-325 30-63 (664)
473 1m7b_A RND3/RHOE small GTP-bin 87.0 0.31 1.1E-05 45.9 3.0 22 292-313 9-30 (184)
474 3clv_A RAB5 protein, putative; 87.0 0.41 1.4E-05 45.0 3.8 23 291-313 8-30 (208)
475 2a9k_A RAS-related protein RAL 87.0 0.33 1.1E-05 45.2 3.1 22 292-313 20-41 (187)
476 2oil_A CATX-8, RAS-related pro 86.9 0.33 1.1E-05 46.0 3.1 22 292-313 27-48 (193)
477 1yrb_A ATP(GTP)binding protein 86.9 0.6 2E-05 46.7 5.1 33 291-323 15-49 (262)
478 1pui_A ENGB, probable GTP-bind 86.9 0.16 5.5E-06 48.9 0.8 23 291-313 27-49 (210)
479 2bme_A RAB4A, RAS-related prot 86.8 0.33 1.1E-05 45.5 3.0 22 292-313 12-33 (186)
480 1ko7_A HPR kinase/phosphatase; 86.8 0.39 1.3E-05 50.9 3.8 27 291-318 145-171 (314)
481 2efe_B Small GTP-binding prote 86.8 0.34 1.2E-05 45.0 3.1 22 292-313 14-35 (181)
482 2gj8_A MNME, tRNA modification 86.8 0.33 1.1E-05 45.7 2.9 22 292-313 6-27 (172)
483 3fht_A ATP-dependent RNA helic 86.7 1.6 5.5E-05 46.2 8.7 18 290-307 64-81 (412)
484 2p5s_A RAS and EF-hand domain 86.7 0.38 1.3E-05 46.1 3.4 24 290-313 28-51 (199)
485 2cxx_A Probable GTP-binding pr 86.6 0.29 1E-05 45.9 2.5 22 292-313 3-24 (190)
486 4ag6_A VIRB4 ATPase, type IV s 86.6 0.59 2E-05 50.3 5.2 23 291-313 36-58 (392)
487 2npi_A Protein CLP1; CLP1-PCF1 86.6 0.33 1.1E-05 54.1 3.3 23 292-314 140-162 (460)
488 2oca_A DAR protein, ATP-depend 86.5 2.5 8.5E-05 46.7 10.4 32 292-323 130-165 (510)
489 3tw8_B RAS-related protein RAB 86.5 0.33 1.1E-05 45.0 2.7 21 292-312 11-31 (181)
490 4tmk_A Protein (thymidylate ki 86.4 0.34 1.2E-05 48.3 2.9 23 292-314 5-27 (213)
491 2xgj_A ATP-dependent RNA helic 86.4 2 6.9E-05 52.4 10.3 33 292-324 103-138 (1010)
492 4hlc_A DTMP kinase, thymidylat 86.4 0.56 1.9E-05 46.3 4.5 31 292-322 4-36 (205)
493 3tui_C Methionine import ATP-b 86.4 0.31 1.1E-05 52.7 2.8 23 292-314 56-78 (366)
494 2eyq_A TRCF, transcription-rep 86.4 3.4 0.00012 51.2 12.4 53 262-323 605-660 (1151)
495 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.39 1.3E-05 44.8 3.2 23 292-314 25-47 (149)
496 2g6b_A RAS-related protein RAB 86.3 0.38 1.3E-05 44.6 3.1 24 291-314 11-34 (180)
497 1mh1_A RAC1; GTP-binding, GTPa 86.2 0.39 1.3E-05 44.8 3.1 22 292-313 7-28 (186)
498 3kkq_A RAS-related protein M-R 86.2 0.39 1.3E-05 44.9 3.1 22 292-313 20-41 (183)
499 1knx_A Probable HPR(Ser) kinas 86.2 0.32 1.1E-05 51.5 2.8 28 291-319 148-175 (312)
500 2wjy_A Regulator of nonsense t 86.1 0.33 1.1E-05 57.9 3.0 33 292-324 373-409 (800)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.4e-85 Score=739.69 Aligned_cols=445 Identities=56% Similarity=0.954 Sum_probs=386.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
.+.++|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||++|+++|+++++||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch
Q 005003 331 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 331 ~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ 410 (720)
.|.+..+++.+|..|+..+||||||||||.++.+++.+.++++++..+++++||.+||++..+.+++||++||+++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999888766667788889999999999999888889999999999999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 490 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl 490 (720)
+++||||||+.+.+++|+.++|.+|++.++++.++..++++..++..++|++|+||.++|++|+..|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccCcc-cccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCC-ccceeEEeecCCCCCCccHHHHHH
Q 005003 491 DDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLISKQQLFA 568 (720)
Q Consensus 491 ~~Al~~v~~~~~~~~-~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg-~a~G~~~~~p~~~~~~~t~~~l~~ 568 (720)
.+|++++..+..++. ..++++++.++|||+|||++++++++.+++++++|+||| +++||+++.|.++.+++||.+|++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~ 329 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHH
Confidence 999999998877664 456778899999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHH-hhhhcccccHHHHH
Q 005003 569 RIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIM-RMMARNSMSEKLAE 646 (720)
Q Consensus 569 ~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~-~~~~~~~~s~~~~~ 646 (720)
+|+++|||||||+++|| ++||||+|||++||+||+.||++||||+ +||+.|...... .|++ .+...++||++++.
T Consensus 330 ~i~~~l~Gr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~ 406 (476)
T 2ce7_A 330 KLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQE-VFLGKEITRLRNYSEEVAS 406 (476)
T ss_dssp HHHHHTHHHHHHHHHHS--SCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC--------------CCCSCHHHHH
T ss_pred HHHHHHhHHHHHhhhcC--CCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCcc-ccccccccccccccHHHHH
Confidence 99999999999999999 4899999999999999999999999998 999998763211 2553 34456789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhc
Q 005003 647 DIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 698 (720)
Q Consensus 647 ~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~ 698 (720)
.||+||++++++||++|+++|++||+.|++||++|+|+|||+++||++|+++
T Consensus 407 ~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 407 KIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-85 Score=740.16 Aligned_cols=476 Identities=50% Similarity=0.835 Sum_probs=422.3
Q ss_pred CCcccccccccccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh
Q 005003 234 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 234 ~~~~~~~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e 313 (720)
++.|+||+|++++..+. ++++|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||+||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp ---------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999988776 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 005003 314 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 393 (720)
Q Consensus 314 ~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~ 393 (720)
++.||++++++++.+.+.+....+++.+|+.++...|||+||||||.++.+++.+.++++++..+++++++.+|+++..+
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999888899999999999988776554556778889999999999999888
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
..+++|++||+|+.||++++||||||+.+.+++||.++|.+||+.|+++..+..++++..++..++|++|+||+++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHcCccCcc-cccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEe
Q 005003 474 AILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 552 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~-~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~ 552 (720)
+..|.++++..|+.+|+++|++++.++..++. ..++++++.++|||+|||++++++++.++|++++|+||++++||++
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~- 326 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM- 326 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-
Confidence 99999888889999999999999999877654 4577889999999999999999999999999999999999999998
Q ss_pred ecC-CCCCCccHHHHHHHHHHhhchhhhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhh
Q 005003 553 IPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDV 630 (720)
Q Consensus 553 ~p~-~~~~~~t~~~l~~~i~~~lgGraAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~ 630 (720)
|. ++.+++||.+++++|+++|||||||+++|| ++||||+|||++||+||+.||++||||+ +||+.|..... .|
T Consensus 327 -p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~--~~ 401 (499)
T 2dhr_A 327 -PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED--TY 401 (499)
T ss_dssp -HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSC--SCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC--CS
T ss_pred -cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhc--ccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc--cc
Confidence 76 788999999999999999999999999999 4899999999999999999999999998 99999876332 25
Q ss_pred HHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCCC-CCCC
Q 005003 631 IMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAE-NRVP 709 (720)
Q Consensus 631 ~~~~~~~~~~s~~~~~~id~ev~~il~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~~-~~~~ 709 (720)
++.+. .++||++++..||+||++++++||++|+++|++||+.|++||++|+|+|||+++||++|+++.+..+++ ..+.
T Consensus 402 ~~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (499)
T 2dhr_A 402 LGGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLEAPEEAREE 480 (499)
T ss_dssp SCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCCCCC-----
T ss_pred ccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCCCCcchhhhc
Confidence 54333 578999999999999999999999999999999999999999999999999999999999877544333 3444
Q ss_pred CCCCCCCC
Q 005003 710 PAVPAPLS 717 (720)
Q Consensus 710 ~~~~~~~~ 717 (720)
..+|.+++
T Consensus 481 ~~~~~~~~ 488 (499)
T 2dhr_A 481 REPPRVVP 488 (499)
T ss_dssp --------
T ss_pred cCCCCcCC
Confidence 45555443
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-53 Score=464.60 Aligned_cols=259 Identities=39% Similarity=0.712 Sum_probs=247.4
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
.+.....|+++|+||+|++++|++|++.|.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 4455677899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
+++.++|+|++++.++.+|..|+..+||||||||||+++++|..+.++++.+..+++++||.+||++....+|+||+|||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 99999999999999999999999999999999999999999887766677788899999999999999999999999999
Q ss_pred CCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 005003 404 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 483 (720)
Q Consensus 404 ~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~ 483 (720)
+|+.||||++||||||+.|+|++||.++|.+||+.|+++.++..++|++.+|+.|.||||+||+++|++|++.|.++++.
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~ 375 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI 375 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHcCccC
Q 005003 484 AISSKEIDDSIDRIVAGMEG 503 (720)
Q Consensus 484 ~It~~dl~~Al~~v~~~~~~ 503 (720)
.|+++||+.|++++......
T Consensus 376 ~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 376 HVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp BCCHHHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHhCcccc
Confidence 99999999999998765443
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-54 Score=471.49 Aligned_cols=301 Identities=34% Similarity=0.604 Sum_probs=266.9
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccccccccccccCCCCCccccccchHHHHHHHHHHHH-
Q 005003 197 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF- 275 (720)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~- 275 (720)
.+++.+...+....+..+..+++.+++....+ ..+-..+.+...+..+..++++|+||+|++++|++|++.+.+
T Consensus 127 ~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~-----~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~P 201 (437)
T 4b4t_I 127 DYYVSILSFVDKELLEPGCSVLLHHKTMSIVG-----VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELP 201 (437)
T ss_dssp CCEEECCTTSCGGGCCTTCEEEECTTTCCEEE-----EECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHH
T ss_pred EEEEecccccCHhHccCCcEEEEeccCcccee-----ecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHH
Confidence 56666666555555555555555555443221 011122333344566788999999999999999999999987
Q ss_pred hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEE
Q 005003 276 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 276 l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfI 355 (720)
+++|+.|..+|.++|+|||||||||||||++|+|+|+++++||+.++++++.++|+|++++.++.+|..|+..+||||||
T Consensus 202 l~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfi 281 (437)
T 4b4t_I 202 LTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFI 281 (437)
T ss_dssp HHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHH
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 435 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~I 435 (720)
||||+++.+|..+..+++.+..+++++||.+||++....+|+||+|||+|+.||||++||||||++|+|++||.++|.+|
T Consensus 282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~I 361 (437)
T 4b4t_I 282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKI 361 (437)
T ss_dssp EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHH
T ss_pred ehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHH
Confidence 99999999998776667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCcc
Q 005003 436 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME 502 (720)
Q Consensus 436 L~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~ 502 (720)
|+.|+++..+..++|++.+|+.|.||||+||+++|++|++.|.++++..|+++||..|++++..+..
T Consensus 362 l~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 362 LGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999876543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-51 Score=456.14 Aligned_cols=265 Identities=39% Similarity=0.703 Sum_probs=250.3
Q ss_pred cccccccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005003 240 GQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 318 (720)
Q Consensus 240 ~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf 318 (720)
+.....+..+..|+++|+||+|++++|++|++.|.+ +++|+.|..+|+++|+|||||||||||||++|+|+|+++++||
T Consensus 192 d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 192 DPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 333344566788999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred EEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 319 FSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 319 ~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
+.++++++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|.....+.......+++++|.+||++....+|+|
T Consensus 272 i~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 272 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp EEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred EEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999776666667788899999999999999999999
Q ss_pred EEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 399 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 399 IaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
|+|||+|+.||+|++||||||++|+|++||.++|.+||+.|+++..+..+++++.+|+.|.||||+||+++|++|++.|.
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI 431 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHHcCccCc
Q 005003 479 RRGKAAISSKEIDDSIDRIVAGMEGT 504 (720)
Q Consensus 479 r~~~~~It~~dl~~Al~~v~~~~~~~ 504 (720)
++++..|+++||..|+++++.+.++.
T Consensus 432 r~~~~~it~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 432 RARRKVATEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHTCSSBCHHHHHHHHHHHHHHHCC-
T ss_pred HcCCCccCHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-50 Score=450.29 Aligned_cols=257 Identities=40% Similarity=0.674 Sum_probs=245.2
Q ss_pred cccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 244 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 244 ~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
..+.....|+++|+||+|++++|+++++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|+++++||+.++
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34455678899999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 323 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 323 ~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
++++.++|+|.+++.++.+|..|+..+||||||||||+++.+|.......+.+...++++||.+||++....+|+||+||
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 99999999999999999999999999999999999999999987766666777889999999999999999999999999
Q ss_pred CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005003 403 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 482 (720)
Q Consensus 403 N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~ 482 (720)
|+|+.||||++||||||+.|+|++||.++|.+||+.|+++..+..++|++.+|+.|.||||+||.++|++|++.|.++++
T Consensus 328 Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHcC
Q 005003 483 AAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 483 ~~It~~dl~~Al~~v~~~ 500 (720)
..|+++||..|++++...
T Consensus 408 ~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SSBCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998754
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-51 Score=452.62 Aligned_cols=258 Identities=37% Similarity=0.686 Sum_probs=244.6
Q ss_pred ccccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 243 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 243 ~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
...+..+..|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|+++++||+.+
T Consensus 167 ~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 167 VKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 334556678999999999999999999997766 9999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 322 SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 322 s~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
+++++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|..+..++..+..+++++||.+||++....+|+||+|
T Consensus 247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa 326 (434)
T 4b4t_M 247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326 (434)
T ss_dssp EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999776666677888999999999999999999999999
Q ss_pred eCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 402 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 402 TN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
||+|+.||||++||||||+.|+|++||.++|.+||+.|+++..+..++|++.+|+.|.||||+||+++|++|++.|.+++
T Consensus 327 TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHcC
Q 005003 482 KAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 482 ~~~It~~dl~~Al~~v~~~ 500 (720)
+..|+.+||.+|++++.+.
T Consensus 407 ~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 407 QSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp CSSBCHHHHHHHHHSCSSS
T ss_pred CCCcCHHHHHHHHHHHhCC
Confidence 9999999999999887544
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-49 Score=441.91 Aligned_cols=255 Identities=40% Similarity=0.672 Sum_probs=243.2
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
.+..+..|+++|+||+|++++|+++++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3455678899999999999999999998886 999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
+++.++|+|.++..++++|..|+..+||||||||+|+++.+|.....+++.+..+++++||.+||++....+|+||+|||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999977766777788899999999999999999999999999
Q ss_pred CCCccchhhcCCCcccceeeec-CCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 005003 404 RADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 482 (720)
Q Consensus 404 ~p~~LD~ALlrpgRFdr~I~i~-~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~ 482 (720)
+|+.||||++||||||+.|+++ +|+.++|..||+.|+++..+..++|++.+|..|.||||+||+++|++|++.|.++++
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999996 899999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHc
Q 005003 483 AAISSKEIDDSIDRIVA 499 (720)
Q Consensus 483 ~~It~~dl~~Al~~v~~ 499 (720)
..|+++||++|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 99999999999988653
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=1.3e-48 Score=400.37 Aligned_cols=200 Identities=37% Similarity=0.594 Sum_probs=160.1
Q ss_pred cCccCcc-cccCCccchhhHHHHHHHHHHhhcCCCCCcceeeeecCCccceeEEeecCCCCCCccHHHHHHHHHHhhchh
Q 005003 499 AGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGR 577 (720)
Q Consensus 499 ~~~~~~~-~~~~~~k~~vA~hEaGhAvv~~~l~~~~~v~kvti~prg~a~G~~~~~p~~~~~~~t~~~l~~~i~~~lgGr 577 (720)
+|+++++ ..++++|+++||||+|||||++++++.+||+||||+|||+++|||++.|.+|.+++||.+|+++|+++||||
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGR 81 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGR 81 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHH
Confidence 4666654 568899999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred hhhhhhcCCCCcccCcchHHHHHHHHHHHHHHhcCCCC-CCCccccCCCCchhhHHhhhhcccccHHHHHHHHHHHHHHH
Q 005003 578 AAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSE-IGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLS 656 (720)
Q Consensus 578 aAEe~~fg~~~~t~Ga~~Dl~~At~lA~~mv~~~Gm~~-~g~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~id~ev~~il 656 (720)
|||+++||.+++||||+|||++||+||+.||++||||+ +||+.|....+ .|++.+...++||++++..||.||++++
T Consensus 82 aAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~iD~Ev~~il 159 (238)
T 2di4_A 82 AAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVAN--PFLGGMTTAVDTSPDLLREIDEEVKRII 159 (238)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCcc--ccccccccccccCHHHHHHHHHHHHHHH
Confidence 99999996556999999999999999999999999998 99999976332 3666445568899999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhccc
Q 005003 657 DRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 700 (720)
Q Consensus 657 ~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~ 700 (720)
++||++|++||++||+.|++||++|+++|||+++||++|+..++
T Consensus 160 ~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 160 TEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999998764
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-44 Score=425.84 Aligned_cols=231 Identities=42% Similarity=0.783 Sum_probs=187.5
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..++++|+||+|++++|++|++.+.+ +++|+.|.++|..+|+|+|||||||||||++|+++|++++.||+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999987 78999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
+|+|++++.++.+|+.|++.+||||||||||+++.+|+...+.++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999987654555566778999999999999999999999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
|+|++||||||++|+|++||.++|.+||+.|+++.++..++|++.||+.|.||||+||+++|++|++.|.++
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.4e-42 Score=406.50 Aligned_cols=275 Identities=38% Similarity=0.619 Sum_probs=244.1
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++||++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
+|.|.++..++.+|+.|+.++||||||||||+++++|+.. ..+...+++++||.+||++..+.+|+||+|||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999888653 2345578999999999999988899999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------- 481 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~------- 481 (720)
|++++||||||+.|+++.||.++|.+||+.|+++..+..++|+..+|..|.||+|+||.++|++|++.|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ----------CCccCHHHHHHHHHHHHcCccCcccc---cCCccchhhHHHHHHHHHHh
Q 005003 482 ----------KAAISSKEIDDSIDRIVAGMEGTVMT---DGKSKSLVAYHEVGHAICGT 527 (720)
Q Consensus 482 ----------~~~It~~dl~~Al~~v~~~~~~~~~~---~~~~k~~vA~hEaGhAvv~~ 527 (720)
...|+.+||..|+..+.+...+.... .-....+..+.++...+...
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~ 492 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL 492 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTT
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHH
Confidence 13478899999998876654443221 11223345566777666443
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.3e-39 Score=334.70 Aligned_cols=254 Identities=67% Similarity=1.095 Sum_probs=233.1
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.+..++.+|+||+|.+++|+++.+++.++.++..|..+|...|++++|+||||||||++|+++|++++.|++.++++++.
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
+.+.+.+...++.+|+.++...||++||||+|.++..++...+++..+..+.+++++..++++..+.+++||++||+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 98889999999999999999899999999999999887765556667777899999999999888889999999999999
Q ss_pred cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 005003 408 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 487 (720)
Q Consensus 408 LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~ 487 (720)
+|++++|||||++.+.+++|+.++|.+|++.+++...+..+.++..++..++|||++||.++|++|+..|.++++..|+.
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 99999999999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCc
Q 005003 488 KEIDDSIDRIVAGM 501 (720)
Q Consensus 488 ~dl~~Al~~v~~~~ 501 (720)
+|+++|++++..+.
T Consensus 243 ~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 243 VEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999987664
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=8.6e-38 Score=331.86 Aligned_cols=248 Identities=40% Similarity=0.742 Sum_probs=222.6
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..++++|+||+|++++|+++++.+.+ +.+|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45788999999999999999999986 88999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
.+.|.....++.+|..++...||||||||+|.+...++...........+.++++|..|+++....+++||+|||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999987765432222333456788999999998878899999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC------
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK------ 482 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~------ 482 (720)
|++++|||||++.+++++|+.++|.+|++.+++...+..+++++.++..+.||+|+||.++|++|+..|.++..
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999988888889999999999999999999999999999876421
Q ss_pred -------------------CccCHHHHHHHHHHH
Q 005003 483 -------------------AAISSKEIDDSIDRI 497 (720)
Q Consensus 483 -------------------~~It~~dl~~Al~~v 497 (720)
..|+.+||..|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 357777787777654
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.4e-38 Score=328.92 Aligned_cols=247 Identities=40% Similarity=0.730 Sum_probs=208.7
Q ss_pred CCCCCccccccchHHHHHHHHHH-HHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv-~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
.++++|+||+|.+++|+++++.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999855 56899999999999999999999999999999999999999999999999999888
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
+.+...+.++.+|+.++...||++|+||+|.++..++.. ......+.+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888888999999999988999999999999987665421 11223457899999999998888899999999999999
Q ss_pred hhhcCCCcccceeeecCCCHHHHHHHHHHhhcC---CCCcccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh----
Q 005003 410 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---KKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRR---- 480 (720)
Q Consensus 410 ~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~---~~l~~dvdl~~LA~~t~--G~SgadL~~lv~eAa~~A~r~---- 480 (720)
++++||||||+.|++++|+.++|.+||+.++++ ..+..+++++.+|..+. ||||+||.++|++|+..|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 34567889999999754 999999999999999999875
Q ss_pred -------CCCccCHHHHHHHHHHHHcC
Q 005003 481 -------GKAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 481 -------~~~~It~~dl~~Al~~v~~~ 500 (720)
+...|+++||++|+.++.+.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCC
Confidence 23479999999999876543
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.6e-37 Score=318.71 Aligned_cols=254 Identities=46% Similarity=0.776 Sum_probs=237.1
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
....++++|++++|++++++++.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3456789999999999999999998876 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC
Q 005003 327 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 406 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~ 406 (720)
...+.|.....++.+|..++...|+||||||+|.+..++.....++..+.+..+.+++..++++....+++||+|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999888776555566778889999999999888888999999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 486 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It 486 (720)
.+|++++|++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|++|...|.++++..|+
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 005003 487 SKEIDDSIDRIVAGM 501 (720)
Q Consensus 487 ~~dl~~Al~~v~~~~ 501 (720)
.+|+.+|+.++....
T Consensus 248 ~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 248 MDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987543
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=316.85 Aligned_cols=253 Identities=53% Similarity=0.900 Sum_probs=204.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHh
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~ 331 (720)
++++|+||+|++++|+++++++.++..++.|..+|...|+++||+||||||||++|+++|++++.|++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCC-CChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch
Q 005003 332 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG-GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 332 G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ 410 (720)
+.+...++.+|..+....|+||||||+|.+..++.....+ .+.+....+++++..+++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 8888899999999999999999999999998766432211 134456788999999998877789999999999999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccccc--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHH
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS--LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 488 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvd--l~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~ 488 (720)
+++|+|||++.+++++|+.++|.+|++.++....+..+.+ ...++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999988766654433 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCccCc
Q 005003 489 EIDDSIDRIVAGMEGT 504 (720)
Q Consensus 489 dl~~Al~~v~~~~~~~ 504 (720)
|+..|+.++..+..++
T Consensus 241 d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKK 256 (262)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccChhhh
Confidence 9999999998776544
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=6.7e-36 Score=308.15 Aligned_cols=246 Identities=67% Similarity=1.114 Sum_probs=221.8
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
...++++|+|++|.++++.++++++..+.++..+...+..+|+|++|+||||||||++++++|+..+.+++.+++.++.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34577899999999999999999999998888999999999999999999999999999999999999999999999988
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
.+.+.....++.+|+.+....|+++|+||+|.++..+..+.+...++..+.+++++.++++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88888888899999999878899999999999987765433344567788899999999998877789999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHH
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 488 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~ 488 (720)
|++++|++||++.++++.|+.++|.+|++.+++...+..++++..++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999888899999
Q ss_pred HHHHHH
Q 005003 489 EIDDSI 494 (720)
Q Consensus 489 dl~~Al 494 (720)
|+++|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.7e-35 Score=309.95 Aligned_cols=259 Identities=64% Similarity=1.079 Sum_probs=225.1
Q ss_pred CcccccccccccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 235 FPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 235 ~~~~~~~s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..+.+.++...... ..++++|+|++|.+++++++++++..+.++..+...+..+|+|++|+||||||||++++++|+..
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 19 SAFSFTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp -------CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred Cccccccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 34566666655443 34789999999999999999999999999989999999999999999999999999999999999
Q ss_pred CCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 315 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 315 g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
+.+++.+++.++.+.+.+.....++.+|+.+....|+++|+||+|.++..+........++..+.+++++.++++.....
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 98 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999988888888888999999998888999999999999876643323345667888999999999988777
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAA 474 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa 474 (720)
.++++++||.|+.+|++++|++||++.++++.|+.++|.+|++.+++...+..++++..++..++|++++||+++|++|+
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 257 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred HHHHHhCCCccCHHHHHHHH
Q 005003 475 ILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 475 ~~A~r~~~~~It~~dl~~Al 494 (720)
..|.+++...|+.+|+++|+
T Consensus 258 ~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 258 LLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHhCCCCcCHHHHHHHh
Confidence 99999888899999999875
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=317.93 Aligned_cols=225 Identities=36% Similarity=0.626 Sum_probs=203.2
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-CCCEEEEechhhH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFV 327 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~s~~~ 327 (720)
..++++|+||+|++++|+.+++.+.+ ++.|+.|.. +..+|+++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45789999999999999999998876 788887763 35678999999999999999999999999 8999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-CCcEEEEEEeCCCC
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 406 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-~~~ViVIaaTN~p~ 406 (720)
..+.|.....++.+|..++...||||||||+|.+..+++.. ......+.+++++.+|+++.. ..+++||+|||+|+
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998877543 344567889999999999863 67899999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
.+|++++| ||++.+++++|+.++|.+|++.+++..... .+.++..+++.+.||||+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877654 5677999999999999999999999999999875
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.8e-36 Score=319.14 Aligned_cols=229 Identities=35% Similarity=0.621 Sum_probs=201.4
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
.....++++|+||+|++++|+.+++.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567889999999999999999998866 667766665 5677899999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-CCCcEEEEEEeCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-~~~~ViVIaaTN~ 404 (720)
+...+.|.....++.+|..++...||||||||||.+..+++.+ ......+.+++++..++++. ...+++||+|||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999998776442 23345678899999999884 5678999999999
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
++.||++++| ||++.+++++|+.++|.+|++.++.+.... .+.++..++..+.||+++||.++|++|...|.++.
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887654 56679999999999999999999999999998763
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.6e-34 Score=326.54 Aligned_cols=264 Identities=40% Similarity=0.670 Sum_probs=229.7
Q ss_pred CCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
+.++|++|+|.+++++++++.+.. +++|+.|..+|...|+++||+||||||||++|+++|++++.||+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 567899999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch
Q 005003 331 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 331 ~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ 410 (720)
.|.....++.+|..|....||||||||||.+..+++.. ..+....++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998776532 345567889999999998888889999999999999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-------
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA------- 483 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~------- 483 (720)
+++|+|||++.++++.|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999998888889999999999999999999999999999887643
Q ss_pred ----------ccCHHHHHHHHHHHHcCccCcccccCCccchhhHHHHH
Q 005003 484 ----------AISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVG 521 (720)
Q Consensus 484 ----------~It~~dl~~Al~~v~~~~~~~~~~~~~~k~~vA~hEaG 521 (720)
.|+++||..|+..+.+...+.... +...+.|.++|
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~---e~p~v~W~dig 480 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV---EVPQVTWEDIG 480 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhcccc---cCCCCCHHHcC
Confidence 478999999998776554333221 12235555555
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.1e-34 Score=313.24 Aligned_cols=226 Identities=35% Similarity=0.632 Sum_probs=194.3
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
...++++|+||+|++++++.+++.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 356789999999999999999998866 678887776 667889999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-CCcEEEEEEeCCCC
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 406 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-~~~ViVIaaTN~p~ 406 (720)
..+.|.....++.+|..++...||||||||+|.+...++.+ .......++++|+..|+++.. ..+++||++||+++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999998776542 344567788999999998754 56899999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
.+|++++| ||++.+++++|+.++|.+|++.++...... .+.+++.|++.+.||+|+||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887643 5677999999999999999999999999999876
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=6.7e-37 Score=317.43 Aligned_cols=251 Identities=61% Similarity=1.012 Sum_probs=219.8
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
..++++|+|++|.+++++++.+++.++..++.|..+|...|+++||+||||||||++|+++|++++.|++.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCC-CCCCChHHHHHHHHHHhhhcCccCC-CcEEEEEEeCCCCc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADI 407 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~ln~LL~~ldg~~~~-~~ViVIaaTN~p~~ 407 (720)
+.|.+...++.+|+.+....|+||||||+|.+..++..+ ....+.+..+.+++++..+++.... .+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888888888899999999999999999999997765321 1122333445678899999877543 45999999999999
Q ss_pred cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 005003 408 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 487 (720)
Q Consensus 408 LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~ 487 (720)
+|++++|+|||+..++++.|+.++|.++++.+++...+..+.+++.++..+.|++|+||.++|++|+..|.+++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999988887778888999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHcC
Q 005003 488 KEIDDSIDRIVAG 500 (720)
Q Consensus 488 ~dl~~Al~~v~~~ 500 (720)
+|+.+|+.++...
T Consensus 244 ~~~~~a~~~~~~~ 256 (268)
T 2r62_A 244 QHLKEAVERGIAG 256 (268)
T ss_dssp HHHHTSCTTCCCC
T ss_pred HHHHHHHHHHhhc
Confidence 9999888765443
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.3e-33 Score=311.58 Aligned_cols=227 Identities=35% Similarity=0.624 Sum_probs=193.8
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-CCCEEEEechh
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSE 325 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~s~ 325 (720)
....++++|+||+|++++++.+.+.+.+ ++.|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998764 677777653 35678999999999999999999999999 89999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC-CCcEEEEEEeCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~-~~~ViVIaaTN~ 404 (720)
+...+.|.....++.+|..++...||||||||||.+..++... ......+.+++||..|+++.. ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998776543 344567789999999998763 578999999999
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
|+.+|++++| ||++.+.+++|+.++|..|++.++...... .+.++..|+..+.||||+||.++|++|+..|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877653 5677999999999999999999999999999875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=3.6e-31 Score=287.71 Aligned_cols=245 Identities=33% Similarity=0.579 Sum_probs=209.8
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..++++|+||+|++++++.+.+.+.. +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 44678999999999999999998876 77777776654 67889999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC--CCcEEEEEEeCCCC
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 406 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~--~~~ViVIaaTN~p~ 406 (720)
.+.|.....++.+|..++...|+||||||||.+..++.. +.+....+.+++++..+++... ..+++||+|||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999876643 2344567788999999998653 46799999999999
Q ss_pred ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC----
Q 005003 407 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG---- 481 (720)
Q Consensus 407 ~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~---- 481 (720)
.+|++++| ||+..+++++|+.++|.++++.++...... .+.++..+++.+.||+++||.++|++|...+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999998765433 34568899999999999999999999999988743
Q ss_pred --------CCccCHHHHHHHHHHHHcC
Q 005003 482 --------KAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 482 --------~~~It~~dl~~Al~~v~~~ 500 (720)
...|+.+||..|+.++.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999987543
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.7e-31 Score=280.79 Aligned_cols=243 Identities=38% Similarity=0.595 Sum_probs=205.3
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.+.++++|+|++|.+++++.+.+.+.. ..+|+.|...+ .+++++||+||||||||++|+++|++++.+|+.++|+++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 456788999999999999999998865 66777766554 4678999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC---CcEEEEEEeCC
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---TGIIVIAATNR 404 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~---~~ViVIaaTN~ 404 (720)
..+.|.+...++.+|..+....|+||||||+|.+...+.... .+......++++..+++.... .+++||++||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 888888889999999999999999999999999987665322 222356778888888877543 57999999999
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC-
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK- 482 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~- 482 (720)
++.+|+++++ ||+..+.+++|+.++|..|++.++...... .+.++..++..+.|++++||.++|++|...|.++..
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999988765432 344588899999999999999999999999988642
Q ss_pred -----------CccCHHHHHHHHHHH
Q 005003 483 -----------AAISSKEIDDSIDRI 497 (720)
Q Consensus 483 -----------~~It~~dl~~Al~~v 497 (720)
..|+.+|+..|+.++
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSC
T ss_pred hhcccccccccCCcCHHHHHHHHHHc
Confidence 579999999988654
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=8.4e-34 Score=338.37 Aligned_cols=233 Identities=42% Similarity=0.774 Sum_probs=206.3
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
...+.++|+|++|++++|+++.+.+.+ ++.+..|..++..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345789999999999999999998876 6778888899999999999999999999999999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCc
Q 005003 328 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 407 (720)
Q Consensus 328 ~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~ 407 (720)
+.|+|.....++.+|+.++...||||||||||.++..|+...+.......+++++||.+||++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998877543222334567899999999999988889999999999999
Q ss_pred cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 005003 408 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 481 (720)
Q Consensus 408 LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~ 481 (720)
+|++++|||||++.|++++|+.++|.+||+.++++..+..+++++.+++.+.|||++||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999998765
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=284.01 Aligned_cols=245 Identities=37% Similarity=0.594 Sum_probs=200.1
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
+.+..++++|+||+|++++++.+.+.+.. ...++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34456788999999999999999998866 55666666655 45789999999999999999999999999999999999
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC--CCcEEEEEEeC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATN 403 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~--~~~ViVIaaTN 403 (720)
+...+.|.....++.+|..++...|+||||||||.+...+..+ ........+++|+..+++... ..+++||+|||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999997765432 233456788889999987764 45799999999
Q ss_pred CCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--
Q 005003 404 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR-- 480 (720)
Q Consensus 404 ~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~-- 480 (720)
+++.+|++++| ||+..++++.|+.++|.+|++.++...... .+.++..++..+.|+++++|..+|++|...+.++
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999988765433 3346889999999999999999999999999886
Q ss_pred ----------CCCccCHHHHHHHHHHH
Q 005003 481 ----------GKAAISSKEIDDSIDRI 497 (720)
Q Consensus 481 ----------~~~~It~~dl~~Al~~v 497 (720)
....|+.+||..++.++
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 34578999999998764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=4.5e-31 Score=279.57 Aligned_cols=228 Identities=17% Similarity=0.259 Sum_probs=160.1
Q ss_pred ccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHH----HhcCCeEEEEccchh
Q 005003 285 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDA 360 (720)
Q Consensus 285 ~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A----~~~~P~ILfIDEID~ 360 (720)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred cccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCH
Q 005003 361 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 429 (720)
Q Consensus 361 l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~ 429 (720)
++.+++.. .........+.+.|+..||+.. ...+++||+|||+++.+|++++|||||++.+. .|+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 98754321 1112233456677777776432 45679999999999999999999999998886 5899
Q ss_pred HHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHH-------HHHHHH-HHHhCCCccCHHHHHHHHHHHHcCc
Q 005003 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL-------NEAAIL-AGRRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 430 ~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv-------~eAa~~-A~r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
++|.+|++.++.. .+++.+.+++.+.||++++|..+. .++... ....|-+. +. .++....
T Consensus 188 ~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~-----~~---~~~~~~~ 255 (293)
T 3t15_A 188 EDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEK-----IG---DKLLNSF 255 (293)
T ss_dssp HHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTT-----CH---HHHTSCS
T ss_pred HHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HH---HHHHcCC
Confidence 9999999988764 356688899999999999886431 111111 11111111 11 1122222
Q ss_pred cCcccccCCccchhhHHHHHHHHHHh
Q 005003 502 EGTVMTDGKSKSLVAYHEVGHAICGT 527 (720)
Q Consensus 502 ~~~~~~~~~~k~~vA~hEaGhAvv~~ 527 (720)
.......+.+....++||+||++++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 22222344567889999999999863
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=6e-28 Score=288.00 Aligned_cols=247 Identities=42% Similarity=0.692 Sum_probs=223.3
Q ss_pred cCCCCCccccccchHHHHHHHHHHHH-hcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..+.++|+||+|++++++++.+.+.. +.+|+.|..+++.+++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34679999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 329 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
.+.+.....++.+|+.+....|+++||||+|.+..+++. ...+...+.+++++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 889999999999999999999999999999999877643 23445567888999999999888899999999999999
Q ss_pred chhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-----
Q 005003 409 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA----- 483 (720)
Q Consensus 409 D~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~----- 483 (720)
|+++.+++||++.+.++.|+.++|.+|++.++.+..+..+.++..++..+.|++++|+..++++|+..+.++...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999999999999999999999999999999999998888889999999999999999999999999988775432
Q ss_pred ------------ccCHHHHHHHHHHHHc
Q 005003 484 ------------AISSKEIDDSIDRIVA 499 (720)
Q Consensus 484 ------------~It~~dl~~Al~~v~~ 499 (720)
.++.+|+..++.....
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCc
Confidence 3566777777766543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=4.7e-26 Score=255.31 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=145.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechhhHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 328 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~~~~ 328 (720)
.+...|++++|++++++.+.++++.++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999999887654 445678999999999999999999999999 9999999999999
Q ss_pred HHhhhchHHHHHHHHHH---HhcCCeEEEEccchhcccccCCCCCCCChH-HH---------------HHHHHHHhhhc-
Q 005003 329 MFVGVGASRVRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDE-RE---------------QTLNQLLTEMD- 388 (720)
Q Consensus 329 ~~~G~~~~~vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e-~~---------------~~ln~LL~~ld- 388 (720)
.+.|.+.. ++..|..| +...||||||||+|.++.+|+....++... .. +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 778899999999999998876532211110 01 11233455554
Q ss_pred -CccCCCcEEEEEEeCCCCccchhhcCCCcccc--eeeecCCC--HHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcH
Q 005003 389 -GFEGNTGIIVIAATNRADILDSALLRPGRFDR--QVTVDVPD--IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 463 (720)
Q Consensus 389 -g~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr--~I~i~~Pd--~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~Sg 463 (720)
+......++|++|||+++.+|++++||||||+ .+.++.|+ .++|.+|++.+.. .|++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33333446666999999999999999999999 66777774 5778888776542 258889999999 9
Q ss_pred HHHHHHHHH
Q 005003 464 ADLANLLNE 472 (720)
Q Consensus 464 adL~~lv~e 472 (720)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=1.2e-22 Score=213.95 Aligned_cols=224 Identities=18% Similarity=0.269 Sum_probs=172.6
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhccCcC---CceEEEEccCCChHHHHHHHHHHhc-------CCCEEEEech
Q 005003 256 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 324 (720)
Q Consensus 256 f~-dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~---prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs~s 324 (720)
++ +|+|++++|+.+.+++.....+..+...|... +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 45 79999999999999999877677776666554 4469999999999999999999987 3499999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
++...+.|.....++.+|..+ .++||||||+|.+...++. .+.....++.|+..++.. ..++++|++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 999888898888888999887 4689999999999755432 222355777788877743 456899999986
Q ss_pred CC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-cHHHHHHh-------CCCCcHHHHHHHHH
Q 005003 405 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMR-------TPGFSGADLANLLN 471 (720)
Q Consensus 405 p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~LA~~-------t~G~SgadL~~lv~ 471 (720)
++ .++|++++ ||+..++++.|+.+++.+|++.++.......+. .+..++.. ....+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 54 35799999 999999999999999999999998765443222 24445554 34457999999999
Q ss_pred HHHHHHHHh----CCCccCHHHHH
Q 005003 472 EAAILAGRR----GKAAISSKEID 491 (720)
Q Consensus 472 eAa~~A~r~----~~~~It~~dl~ 491 (720)
.|...+..+ ....++.+++.
T Consensus 257 ~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 257 RARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHh
Confidence 998866554 34566666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3e-22 Score=216.20 Aligned_cols=252 Identities=19% Similarity=0.271 Sum_probs=168.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechhhHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 329 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~~~~~ 329 (720)
+..+|++++|.+++++.+..+...+... ..+++++||+||||||||++|+++|++++ .|++.++|..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4456999999999999988888776653 23467999999999999999999999987 48999988763321
Q ss_pred H-------------------------------------------------hhhchHHHHHHHHHHHh---------cCCe
Q 005003 330 F-------------------------------------------------VGVGASRVRDLFKKAKE---------NAPC 351 (720)
Q Consensus 330 ~-------------------------------------------------~G~~~~~vr~lF~~A~~---------~~P~ 351 (720)
+ .|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 11224456666655533 1278
Q ss_pred EEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe-----------CCCCccchhhcCCCcccc
Q 005003 352 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-----------NRADILDSALLRPGRFDR 420 (720)
Q Consensus 352 ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT-----------N~p~~LD~ALlrpgRFdr 420 (720)
||||||+|.+. ...++.|+..++.. ...++++++. |.++.+++++++ ||..
T Consensus 192 vl~IDEi~~l~--------------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLD--------------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSB--------------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccC--------------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 99999999983 23455666666543 2345555553 347789999999 9975
Q ss_pred eeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 005003 421 QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 421 ~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~ 499 (720)
+.+++|+.+++.++++.++...... .+..++.+++.+.+.+++++.++++.|...|..++...|+.+|+.+++..+..
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBC
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999887653332 22237778888876789999999999999999999999999999999986432
Q ss_pred CccCcccccCCccchhhHHHHHHHHHHhhcC
Q 005003 500 GMEGTVMTDGKSKSLVAYHEVGHAICGTLTP 530 (720)
Q Consensus 500 ~~~~~~~~~~~~k~~vA~hEaGhAvv~~~l~ 530 (720)
.........+.+ +..-++|.++-.....+.
T Consensus 333 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 362 (368)
T 3uk6_A 333 ESRSTQYMKEYQ-DAFLFNELKGETMDTSLE 362 (368)
T ss_dssp HHHHHHHHC----------------------
T ss_pred HHHHHHHHHHhh-hhhhhhcCCccccccchh
Confidence 211111222222 233477777665544443
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=5.8e-21 Score=204.16 Aligned_cols=219 Identities=20% Similarity=0.241 Sum_probs=167.4
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
.+.++..+.+|++++|.+++++.+.+.+...+.+ ...+.++||+||||||||++|+++|++++.+|+.++|+.
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 3445566779999999999999999988765432 234568999999999999999999999999999999976
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------------
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-------------- 391 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-------------- 391 (720)
+. ....+...+.. ...+++|||||||.+. .. ..+.|+..++...
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~---~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 148 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PA---IEEVLYPAMEDYRLDIIIGSGPAAQTI 148 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HH---HHHHHHHHHHTSCC---------CCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhcC-----------HH---HHHHHHHHHHhccchhhcccCccccce
Confidence 53 22233444433 3467899999999982 22 3344454444322
Q ss_pred --CCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHH
Q 005003 392 --GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLAN 468 (720)
Q Consensus 392 --~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~ 468 (720)
...++++|++||....++++|++ ||+..+.++.|+.+++..+++.++....... +..++.++..+. .+++++.+
T Consensus 149 ~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~ 225 (338)
T 3pfi_A 149 KIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALR 225 (338)
T ss_dssp CCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHH
T ss_pred ecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHH
Confidence 01248999999999999999999 9999999999999999999998877654432 223667777555 47899999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 469 LLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 469 lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
+++.+...|...+...|+.+++..++..
T Consensus 226 ~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 226 LLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 9999998988888889999999998876
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.83 E-value=4.4e-20 Score=195.53 Aligned_cols=220 Identities=22% Similarity=0.273 Sum_probs=163.9
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
+..+.+|++++|.+++++.+.+.+...... ...+.++||+||||||||++|++++++++.+++.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 445668999999999999999888765321 124568999999999999999999999999999999876532
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc-----Ccc--------CCCcE
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GFE--------GNTGI 396 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld-----g~~--------~~~~V 396 (720)
...+...|..+ ...+++|||||+|.+. ...+..+..++.... +.. ...++
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 12222222221 1467899999999983 223333333343321 000 11358
Q ss_pred EEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005003 397 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAI 475 (720)
Q Consensus 397 iVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eAa~ 475 (720)
++|++||.++.+++++.+ ||+..+.++.|+.+++..+++.++....... +..++.++..+.| +++++.++++.+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 899999999999999998 9988999999999999999999886544332 2236778888865 67899999999988
Q ss_pred HHHHhCCCccCHHHHHHHHHHH
Q 005003 476 LAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 476 ~A~r~~~~~It~~dl~~Al~~v 497 (720)
.|...+...|+.+++..++...
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 8877777889999998887654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=5.2e-20 Score=193.03 Aligned_cols=236 Identities=23% Similarity=0.341 Sum_probs=162.9
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhc-cCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-HHhhh
Q 005003 257 DDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 333 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~-l~~p~~~~~~-g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~~~G~ 333 (720)
++++|++++++.+...+.. +..+.....+ +...|.++||+||||||||++|+++|+.++.+++.++|+++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999887754 2222111111 1235779999999999999999999999999999999998875 45554
Q ss_pred c-hHHHHHHHHHH-----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCcEEEE
Q 005003 334 G-ASRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 399 (720)
Q Consensus 334 ~-~~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~~~ViVI 399 (720)
. ...+++++..+ ....++||||||+|.+...... .+.......+.+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34466666532 1123689999999999765432 1122223345677777777532 23468889
Q ss_pred EEe----CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhh-------------cCCCCc-ccccHHHHHHhCC--
Q 005003 400 AAT----NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-------------SNKKFD-ADVSLDVIAMRTP-- 459 (720)
Q Consensus 400 aaT----N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l-------------~~~~l~-~dvdl~~LA~~t~-- 459 (720)
+++ +.+..+++++++ ||+..+.++.|+.+++.+|++.+. ....+. .+..++.+++.+.
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 884 577889999998 999889999999999999998422 111111 1222566666552
Q ss_pred -----CCcHHHHHHHHHHHHHHHHHh-----CCC-ccCHHHHHHHHHH
Q 005003 460 -----GFSGADLANLLNEAAILAGRR-----GKA-AISSKEIDDSIDR 496 (720)
Q Consensus 460 -----G~SgadL~~lv~eAa~~A~r~-----~~~-~It~~dl~~Al~~ 496 (720)
+.+.+++.++++.+...+..+ +.. .|+.+++.+++..
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 568899999999877544322 222 4999999888764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=1.1e-19 Score=189.09 Aligned_cols=222 Identities=21% Similarity=0.297 Sum_probs=150.5
Q ss_pred CccccccchHHHHHHHHH----HHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH-HH
Q 005003 255 TFDDVAGVDEAKQDFMEV----VEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-EM 329 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~ei----v~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~-~~ 329 (720)
..+.++|.+++.+.+.+. +..++ ..+...++++||+||||||||++|+++|++.+.||+.+++++.. ..
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~ 104 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGF 104 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTC
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCC
Confidence 346788998887777763 33332 22346678999999999999999999999999999999887522 11
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-CCCcEEEEEEeCCCCcc
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADIL 408 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-~~~~ViVIaaTN~p~~L 408 (720)
..+.....++.+|+.+....+++|||||+|.+...+..+ .......++.|...+++.. ...+++||+|||.++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 105 SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 112233567889999888889999999999997654321 1223445556666666554 34568899999999999
Q ss_pred ch-hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCC----cHHHHHHHHHHHHHHHHHhCCC
Q 005003 409 DS-ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF----SGADLANLLNEAAILAGRRGKA 483 (720)
Q Consensus 409 D~-ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~----SgadL~~lv~eAa~~A~r~~~~ 483 (720)
++ .+.+ ||+..+.+ |+..+|.+|.+.......+ .+.++..+++.+.|+ +.+++.++++.|...+ .
T Consensus 181 ~~~~l~~--rf~~~i~~--p~l~~r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~ 250 (272)
T 1d2n_A 181 QEMEMLN--AFSTTIHV--PNIATGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----P 250 (272)
T ss_dssp HHTTCTT--TSSEEEEC--CCEEEHHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----G
T ss_pred chhhhhc--ccceEEcC--CCccHHHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----h
Confidence 88 4555 99877766 5555555555544333333 344578888888886 6777777777665332 2
Q ss_pred ccCHHHHHHHHHH
Q 005003 484 AISSKEIDDSIDR 496 (720)
Q Consensus 484 ~It~~dl~~Al~~ 496 (720)
....+++..++..
T Consensus 251 ~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 251 EYRVRKFLALLRE 263 (272)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455554443
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=3.9e-20 Score=211.71 Aligned_cols=225 Identities=23% Similarity=0.289 Sum_probs=150.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH---
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--- 328 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~--- 328 (720)
...-.+|++|++++++.+.+.+....... .. .+..++|+||||||||++|+++|+.++.++..++++.+.+
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 34456889999999999987664321111 01 3457999999999999999999999999999999877543
Q ss_pred ------HHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC---------
Q 005003 329 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------- 393 (720)
Q Consensus 329 ------~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~--------- 393 (720)
.|+|.....+...|..+....| |+||||||.+...+. ....+.||..||.....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 5666667777778887765655 999999999964431 12456677777643211
Q ss_pred ----CcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC-----CCCc---c---cccHHHHHH-h
Q 005003 394 ----TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-----KKFD---A---DVSLDVIAM-R 457 (720)
Q Consensus 394 ----~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~-----~~l~---~---dvdl~~LA~-~ 457 (720)
.++++|+|||+++.+|++|++ ||+ .|+++.|+.+++.+|++.++.. ..+. . +..+..++. .
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 568999999999999999999 996 7999999999999999987622 1111 1 112444444 4
Q ss_pred CCCCcHHHHHHHHHHHHHHH----HHh--CCCccCHHHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILA----GRR--GKAAISSKEIDDSIDR 496 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A----~r~--~~~~It~~dl~~Al~~ 496 (720)
+...+.++|++.+..++..| .+. +...|+.+++++++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 44455666665555544444 333 3457999999988754
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=4.7e-19 Score=192.17 Aligned_cols=221 Identities=24% Similarity=0.289 Sum_probs=153.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhh---hccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH-Hhhh
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFT---AIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGV 333 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~---~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~-~~G~ 333 (720)
.|+|++++++.+...+.......... ......++++||+||||||||++|+++|+.++.||+.++|+++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885321111100 0112356799999999999999999999999999999999998754 7776
Q ss_pred c-hHHHHHHHHHH----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------------
Q 005003 334 G-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------- 391 (720)
Q Consensus 334 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~----------------- 391 (720)
. ...++.+|..+ ....+|||||||||.+...+.....+.....+.+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777765 3446789999999999877654433333444558888888888431
Q ss_pred --CCCcEEEEEEeCCC----------Cc-----------------------------------cchhhcCCCcccceeee
Q 005003 392 --GNTGIIVIAATNRA----------DI-----------------------------------LDSALLRPGRFDRQVTV 424 (720)
Q Consensus 392 --~~~~ViVIaaTN~p----------~~-----------------------------------LD~ALlrpgRFdr~I~i 424 (720)
...++++|+++|.. .. ++|+|+. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22356666666642 11 6788887 99999999
Q ss_pred cCCCHHHHHHHHHHhh-----------cCCCCcccc---cHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHh
Q 005003 425 DVPDIRGRTEILKVHG-----------SNKKFDADV---SLDVIAM--RTPGFSGADLANLLNEAAILAGRR 480 (720)
Q Consensus 425 ~~Pd~~eR~~IL~~~l-----------~~~~l~~dv---dl~~LA~--~t~G~SgadL~~lv~eAa~~A~r~ 480 (720)
.+|+.+++.+|+...+ ........+ .++.|+. ....++.++|+++++.+...+..+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999987521 111211112 2455554 345566789999999888777654
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=2.9e-20 Score=206.92 Aligned_cols=170 Identities=24% Similarity=0.327 Sum_probs=82.0
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhccCc-CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH-HHhhh
Q 005003 257 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 333 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~-l~~p~~~~~~g~~-~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~-~~~G~ 333 (720)
++|+|++++|+.+...+.. ++.+..+..++.. .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 4444444444333 5789999999999999999999999999999999999988 58885
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE-eCCCCccchh
Q 005003 334 -GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSA 411 (720)
Q Consensus 334 -~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa-TN~p~~LD~A 411 (720)
.+..++.+|+.+... +++||++.+.... ......+++++||.+||++....++ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788999999998775 3589998875322 1233468999999999999776654 555 9999999999
Q ss_pred hcCCCcccceeeecCCCHH-HHHHHHHH
Q 005003 412 LLRPGRFDRQVTVDVPDIR-GRTEILKV 438 (720)
Q Consensus 412 LlrpgRFdr~I~i~~Pd~~-eR~~IL~~ 438 (720)
|+||||||+.|++++|+.. .|.+|+..
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999999987 78887743
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=1.4e-18 Score=193.91 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=155.2
Q ss_pred CCCCCccccc-cchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005003 251 NTGVTFDDVA-GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 324 (720)
Q Consensus 251 ~~~~~f~dI~-G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s 324 (720)
.+..+|++++ |.+... ....+......+. . +.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3456899988 644332 2222333333331 1 5589999999999999999999988 8999999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
++...+.+.........|.......|++|||||+|.+..+ +..++. ++..++.....+..+||++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~---l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTE---LFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHH---HHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHH---HHHHHHHHHHCCCeEEEEECCC
Confidence 9876655433222223344443336899999999998421 122223 3333332223445666666555
Q ss_pred CCc---cchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCC--CCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005003 405 ADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 405 p~~---LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~--~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A 477 (720)
+.. +++++++ ||. ..+.++.|+.++|.+|++..+... .+.++ .++.++..+.| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 554 8899999 886 789999999999999999887643 33333 37788888875 8999999999999998
Q ss_pred HHhCCCccCHHHHHHHHHHHH
Q 005003 478 GRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 478 ~r~~~~~It~~dl~~Al~~v~ 498 (720)
...++ .||.+++.+++....
T Consensus 314 ~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSSS-CCCHHHHHHHTSTTT
T ss_pred HHhCC-CCCHHHHHHHHHHHh
Confidence 76664 699999999987654
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=8.7e-19 Score=186.35 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=143.8
Q ss_pred cccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 244 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 244 ~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
...+.++..+.+|++++|.+++++.+.+.+.. ...|..+|++||||||||++|+++|++++.+++++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 34567788889999999999999988888761 2456678999999999999999999999999999998
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHhc-----CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 324 SEFVEMFVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 324 s~~~~~~~G~~~~~vr~lF~~A~~~-----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
++.. ...++..+...... .++||||||+|.+.. .+ ..+.|+..++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~---~~~~L~~~le~~--~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AE---SQRHLRSFMEAY--SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HH---HHHHHHHHHHHH--GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HH---HHHHHHHHHHhC--CCCcEE
Confidence 7642 23445544443332 578999999999831 22 334455544432 245789
Q ss_pred EEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhc---------CCCCcccccHHHHHHhCCCCcHHHHHHH
Q 005003 399 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---------NKKFDADVSLDVIAMRTPGFSGADLANL 469 (720)
Q Consensus 399 IaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~---------~~~l~~dvdl~~LA~~t~G~SgadL~~l 469 (720)
|++||.++.+++++++ ||. .+.++.|+.++|.+|++.... +..+.+...++.++..+.| +.+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999999 885 799999999998776554322 1222221336778887665 44555555
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 470 LNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 470 v~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
++.++ ....|+.+++.+++.
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHG------GGTCBCC--------
T ss_pred HHHHh------ccCCCCHHHHHHHhC
Confidence 55554 234588888877654
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.78 E-value=3.5e-18 Score=183.91 Aligned_cols=226 Identities=17% Similarity=0.204 Sum_probs=163.6
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEec
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISG 323 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~ 323 (720)
...+++++|.++.++++.+.+..... ...+.+++|+||||||||++|+++++++ +.++++++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34559999999999988876643311 1345689999999999999999999988 889999998
Q ss_pred hhhHH------HHh----------hhchHH-HHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHh
Q 005003 324 SEFVE------MFV----------GVGASR-VRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 385 (720)
Q Consensus 324 s~~~~------~~~----------G~~~~~-vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~ 385 (720)
....+ ... +..... ...++..... ..|++|||||+|.+...+ ..+..+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 75321 110 111222 3444444433 348899999999994321 13567777777
Q ss_pred hhcCccCCCcEEEEEEeCCC---CccchhhcCCCcccc-eeeecCCCHHHHHHHHHHhhcC----CCCcccccHHHHHHh
Q 005003 386 EMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMR 457 (720)
Q Consensus 386 ~ldg~~~~~~ViVIaaTN~p---~~LD~ALlrpgRFdr-~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~LA~~ 457 (720)
.++....+.++++|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.++++.++.. ..+.++ .++.++..
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 76654324678999999987 788999998 8875 8999999999999999987653 223222 35667766
Q ss_pred CC--CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 458 TP--GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 458 t~--G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
+. ..+++.+.++++.|...|..++...|+.+|+..++....
T Consensus 235 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 235 AAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 65 136888999999999999888889999999999998763
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.3e-17 Score=164.34 Aligned_cols=206 Identities=22% Similarity=0.213 Sum_probs=148.4
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEE
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 321 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~v 321 (720)
+.++.++.+|++++|.++.++.+.+.+..- .+.+++|+||||||||++|+++++++ ..+++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 344566788999999999999888777521 12259999999999999999999875 4678888
Q ss_pred echhhHHHHhhhchHHHHHHHHHHH------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCc
Q 005003 322 SGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 395 (720)
Q Consensus 322 s~s~~~~~~~G~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ 395 (720)
++++... ...++..+.... ...+++|+|||+|.+. ... .+.|+..++. ...+
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~---~~~l~~~l~~--~~~~ 132 (226)
T 2chg_A 75 NASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADA---QAALRRTMEM--YSKS 132 (226)
T ss_dssp ETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHH---HHHHHHHHHH--TTTT
T ss_pred ccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHH---HHHHHHHHHh--cCCC
Confidence 8765332 122233333222 2468999999999983 222 3334444443 2456
Q ss_pred EEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005003 396 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 474 (720)
Q Consensus 396 ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa 474 (720)
+.+|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...... .+..+..++..+.| +++.+.++++.++
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8889999999999999999 887 89999999999999998877543322 22236677777765 6777778877776
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 005003 475 ILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 475 ~~A~r~~~~~It~~dl~~Al~ 495 (720)
..+ ..|+.+|+++++.
T Consensus 209 ~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 209 AIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HTC-----SCBCHHHHHHHHH
T ss_pred hcC-----ceecHHHHHHHhc
Confidence 543 6899999998875
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=4.5e-18 Score=190.30 Aligned_cols=206 Identities=24% Similarity=0.299 Sum_probs=152.9
Q ss_pred cCCCCCccccccchHHH---HHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 250 PNTGVTFDDVAGVDEAK---QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k---~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
...+.+|++++|+++++ ..+...+..-+ +.++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~- 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT- 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-
Confidence 34567899999999999 56666665322 147999999999999999999999999999998753
Q ss_pred HHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 327 VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 327 ~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
.+...++.+|..+.. ..++||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 86 ------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 86 ------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEE
T ss_pred ------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecC
Confidence 234456677766653 46799999999998321 23445555553 457777777
Q ss_pred --CCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC-------Cc-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005003 403 --NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------FD-ADVSLDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 403 --N~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~-------l~-~dvdl~~LA~~t~G~SgadL~~lv~e 472 (720)
|....++++|++ |+. ++.++.|+.+++..+++..+.... .. .+..++.++..+.| +.+++.++++.
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 444589999999 886 788999999999999999876521 11 12236777887654 78899999999
Q ss_pred HHHHHHHh--CCCccCHHHHHHHHHH
Q 005003 473 AAILAGRR--GKAAISSKEIDDSIDR 496 (720)
Q Consensus 473 Aa~~A~r~--~~~~It~~dl~~Al~~ 496 (720)
+...+... +...||.+++.+++.+
T Consensus 218 a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 218 MADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHhcccccCCCCccCHHHHHHHHhh
Confidence 98887433 4568999999988764
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=1.5e-17 Score=177.20 Aligned_cols=219 Identities=16% Similarity=0.227 Sum_probs=147.2
Q ss_pred CCCCCccccc-cc--hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 251 NTGVTFDDVA-GV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 251 ~~~~~f~dI~-G~--de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
.+..+|++++ |. ..+...++.++ ..+. ..+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~---~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEAL---ENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHH---HTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHH---hCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3456899997 43 33343333333 2321 235689999999999999999999988 8999999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 325 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 325 ~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
++...+.+.........|..... .+++|||||+|.+..+ ...++.+..++..+ ......+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~---~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTL---YLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC---------HHHHHHHHHHHHHH---HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC---------hHHHHHHHHHHHHH---HHCCCeEEEEecCC
Confidence 98776654433222233433332 4789999999998421 12233333333322 23445677777777
Q ss_pred CC---ccchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHH--
Q 005003 405 AD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAIL-- 476 (720)
Q Consensus 405 p~---~LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~-- 476 (720)
+. .+++++.+ ||+ ..+++++ +.+++.+|++.++...... ++..++.++..+ .+.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCH
Confidence 66 68999998 886 5788988 9999999999987643332 122377888888 5789999999988766
Q ss_pred -HHH-hCCCcc-CHHHHHHHHHHH
Q 005003 477 -AGR-RGKAAI-SSKEIDDSIDRI 497 (720)
Q Consensus 477 -A~r-~~~~~I-t~~dl~~Al~~v 497 (720)
+.. .+...| +.+++.+++...
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHH
Confidence 100 223457 777777777654
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.75 E-value=1.2e-17 Score=178.26 Aligned_cols=215 Identities=18% Similarity=0.163 Sum_probs=150.4
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH--HHHh
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--EMFV 331 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~--~~~~ 331 (720)
..+++++|++++++.+...+.. .+++||+||||||||++|+++|+.++.+++.+++.... ..+.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3578999999999877765542 13799999999999999999999999999999884211 1122
Q ss_pred hhchHH-HHHHHHHHHhcC---CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc---------cCCCcEEE
Q 005003 332 GVGASR-VRDLFKKAKENA---PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIV 398 (720)
Q Consensus 332 G~~~~~-vr~lF~~A~~~~---P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~---------~~~~~ViV 398 (720)
|..... ....|. .... .+||||||+|.+. .. ..+.|+..|+.. ..+.++++
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~---~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AK---VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HH---HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccCC-----------HH---HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 211000 000000 0112 3799999999972 22 334444444321 22446888
Q ss_pred EEEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC------------------------Ccccc
Q 005003 399 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK------------------------FDADV 449 (720)
Q Consensus 399 IaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~------------------------l~~dv 449 (720)
|+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.+..... +.++
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~- 230 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES- 230 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-
Confidence 99999654 38999999 9998899999999999999998875431 1111
Q ss_pred cHHHHHHh-------------------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCc
Q 005003 450 SLDVIAMR-------------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 450 dl~~LA~~-------------------t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
.++.++.. ..|.|++.+.++++.|...|..+++..|+.+|+.+++..++...
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 12233221 12569999999999999999999999999999999998876543
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=6.7e-17 Score=172.64 Aligned_cols=223 Identities=19% Similarity=0.242 Sum_probs=141.7
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-------C------
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------P------ 317 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-------p------ 317 (720)
.++.+|++++|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++. |
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 45678999999999877543221 1 11 1236999999999999999999998862 2
Q ss_pred --------------------EEEEechhhHHHHhhhchHHHHHHHHHH---------HhcCCeEEEEccchhcccccCCC
Q 005003 318 --------------------FFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDAVGRQRGTG 368 (720)
Q Consensus 318 --------------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A---------~~~~P~ILfIDEID~l~~~r~~~ 368 (720)
++.+..+.....+.|... +...+... ....+++|||||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 222221111111222100 11122211 11136899999999982
Q ss_pred CCCCChHHHHHHHHHHhhh----cCc----cCCCcEEEEEEeCCCC-ccchhhcCCCcccceeeecCC-CHHHHHHHHHH
Q 005003 369 IGGGNDEREQTLNQLLTEM----DGF----EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRGRTEILKV 438 (720)
Q Consensus 369 ~~~~~~e~~~~ln~LL~~l----dg~----~~~~~ViVIaaTN~p~-~LD~ALlrpgRFdr~I~i~~P-d~~eR~~IL~~ 438 (720)
...+..+..+++.- ... ....++++|+|||..+ .++++|++ ||+.++.++.| +.+.+.+|++.
T Consensus 158 -----~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -----DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 22333333333321 000 1123689999999755 89999999 99988999999 56777788866
Q ss_pred hhc-------------------------------CCCCcccccHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHhCCCc
Q 005003 439 HGS-------------------------------NKKFDADVSLDVIAMRTPG---FSGADLANLLNEAAILAGRRGKAA 484 (720)
Q Consensus 439 ~l~-------------------------------~~~l~~dvdl~~LA~~t~G---~SgadL~~lv~eAa~~A~r~~~~~ 484 (720)
++. ...+.++ .++.++....+ -+.+.+.++++.|...|..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~ 309 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEGATA 309 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 311 1122222 13444444332 267999999999999999899999
Q ss_pred cCHHHHHHHHHHHHcCc
Q 005003 485 ISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 485 It~~dl~~Al~~v~~~~ 501 (720)
|+.+|+.+|+..+....
T Consensus 310 v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 310 VGRDHLKRVATMALSHR 326 (350)
T ss_dssp CCHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999998876543
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=4.3e-18 Score=193.61 Aligned_cols=232 Identities=19% Similarity=0.244 Sum_probs=150.7
Q ss_pred cccccccccCCCCCccccccchHHHHHHHHHHHHhcC--chhhhhccC---cCCceEEEEccCCChHHHHHHHHHHhcCC
Q 005003 242 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKK--PERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGEAGV 316 (720)
Q Consensus 242 s~~~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~--p~~~~~~g~---~~prgVLL~GPPGTGKT~LArAlA~e~g~ 316 (720)
+...+|.++..+.+|+|++|.+++++++.+.+..... +..|...|. ..++++||+||||||||++|+++|++++.
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456788888999999999999999999888765321 122333333 36789999999999999999999999999
Q ss_pred CEEEEechhhHHHHhhhch-------HHHHHHHHHH-----HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHH
Q 005003 317 PFFSISGSEFVEMFVGVGA-------SRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 384 (720)
Q Consensus 317 pf~~vs~s~~~~~~~G~~~-------~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL 384 (720)
+++.++++++......... ..++.+|..+ ....++||||||+|.+.... .. .++.|+
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~---~l~~L~ 172 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RG---GVGQLA 172 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TT---HHHHHH
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HH---HHHHHH
Confidence 9999999876543221100 0123344433 23568999999999995321 11 233344
Q ss_pred hhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC--CCCcccccHHHHHHhCCCCc
Q 005003 385 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFS 462 (720)
Q Consensus 385 ~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~LA~~t~G~S 462 (720)
..++. .+..+++|+++.....+++ +.+ +...+.++.|+.+++.+++...+.. ..+.++ .+..+++.+.| +
T Consensus 173 ~~l~~--~~~~iIli~~~~~~~~l~~-l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-d 244 (516)
T 1sxj_A 173 QFCRK--TSTPLILICNERNLPKMRP-FDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-D 244 (516)
T ss_dssp HHHHH--CSSCEEEEESCTTSSTTGG-GTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-C
T ss_pred HHHHh--cCCCEEEEEcCCCCccchh-hHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 44332 2334555555444444543 443 4458999999999999999876643 334333 37888888765 3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 463 GADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 463 gadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
.+++.++++.+ +. +...|+.+++.+++...
T Consensus 245 iR~~i~~L~~~---~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 245 IRQVINLLSTI---ST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HHHHHHHHTHH---HH--HSSCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH---Hh--cCCCCchHHHHHHHHhh
Confidence 44444444433 32 34578888888777643
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=4.6e-17 Score=161.86 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=149.7
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 317 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p--------- 317 (720)
+.++..+.+|++++|.++.++.+.+.+..- ..|..++|+||||||||+++++++++.+..
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 81 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 81 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 445566778999999999999988877542 234579999999999999999999877432
Q ss_pred ---------------EEEEechhhHHHHhhhchHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHH
Q 005003 318 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 378 (720)
Q Consensus 318 ---------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 378 (720)
++.++... ......++.+++.+. ...|.+|+|||+|.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~ 141 (250)
T 1njg_A 82 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RH 141 (250)
T ss_dssp CSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HH
T ss_pred ccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HH
Confidence 22222211 112233555555442 2357899999999972 12
Q ss_pred HHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHh
Q 005003 379 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 457 (720)
Q Consensus 379 ~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~ 457 (720)
.++.|+..++.. ..++++|++||.++.+++++.+ |+ ..+++++|+.++..++++.++...... .+..++.+++.
T Consensus 142 ~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~ 216 (250)
T 1njg_A 142 SFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 216 (250)
T ss_dssp HHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445566666542 4578999999999999999998 75 589999999999999999887543322 22236778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 458 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 458 t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
+.| +++++.++++.|... +...|+.+++++++
T Consensus 217 ~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 217 AEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred cCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 876 899999999888543 34589999998875
No 51
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=3.3e-17 Score=177.00 Aligned_cols=214 Identities=24% Similarity=0.316 Sum_probs=156.1
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----------CCCEEEEec
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSISG 323 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----------g~pf~~vs~ 323 (720)
..++++|.++.++++.+.+...... ..|++++|+||||||||++|+++++++ +.++++++|
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 3489999999999999888654322 345689999999999999999999987 899999998
Q ss_pred hhhH-H----------HH-------hhhchH-HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHH-HHHH
Q 005003 324 SEFV-E----------MF-------VGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT-LNQL 383 (720)
Q Consensus 324 s~~~-~----------~~-------~G~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~-ln~L 383 (720)
.... + .+ .+.... .+..++..+... +++|||||+|.+..... ... +..+
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~----------~~~~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG----------GDIVLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT----------SHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC----------CceeHHHH
Confidence 7643 1 11 011112 234444444333 44999999999953211 123 5555
Q ss_pred HhhhcCccCCCcEEEEEEeCCC---CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC----CCCcccccHHHHHH
Q 005003 384 LTEMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAM 456 (720)
Q Consensus 384 L~~ldg~~~~~~ViVIaaTN~p---~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~LA~ 456 (720)
+... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..++++.++.. ..+.++ .++.+++
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i~~ 229 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYIAA 229 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHHHH
Confidence 5433 678999999987 678999988 88779999999999999999987652 223222 3566666
Q ss_pred hCC--CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 457 RTP--GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 457 ~t~--G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
.+. .-+.+.+.++++.|...|. +...|+.+|+.++++...
T Consensus 230 ~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 230 ISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 665 1357778899999988875 667899999999998764
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=2.4e-17 Score=165.54 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=139.9
Q ss_pred CCCCccccccch---HHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005003 252 TGVTFDDVAGVD---EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 325 (720)
Q Consensus 252 ~~~~f~dI~G~d---e~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~ 325 (720)
+..+|++++|.+ ++.+.+...+. . ..+++++|+||||||||++|+++++++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 457899999833 44444433332 1 124589999999999999999999876 47899999988
Q ss_pred hHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcE-EEEEEeCC
Q 005003 326 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~V-iVIaaTN~ 404 (720)
+...+... +.. ...+++|+|||+|.+.. .......+..++... .....+ +|+++++.
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~---~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRV---AEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHH---HHHCSCEEEEEESSC
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHH---HHcCCCeEEEEcCCC
Confidence 76543211 111 13468999999999832 111233333333332 223334 44444444
Q ss_pred CC---ccchhhcCCCccc--ceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005003 405 AD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 405 p~---~LD~ALlrpgRFd--r~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~ 478 (720)
++ .+++++.+ ||. ..++++.|+.+++.++++.++...... .+..++.++..+.| +.+++.++++.+...|.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 43 45688888 775 799999999999999999887644332 22236778888865 89999999999998886
Q ss_pred HhCCCccCHHHHHHHHH
Q 005003 479 RRGKAAISSKEIDDSID 495 (720)
Q Consensus 479 r~~~~~It~~dl~~Al~ 495 (720)
..+ ..||.+++.+++.
T Consensus 226 ~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT-CCCCHHHHHHHHT
T ss_pred HhC-CCCcHHHHHHHhh
Confidence 555 4699999988863
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.73 E-value=1.9e-16 Score=170.24 Aligned_cols=216 Identities=23% Similarity=0.340 Sum_probs=159.4
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
.-.+.+|++++|.+.+++.+...+...+.+ ...+.+++|+||||||||++|+++|++.++++...+++.+..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 344568999999999988887776543211 134568999999999999999999999999998887765421
Q ss_pred HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc----------------CC
Q 005003 330 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------GN 393 (720)
Q Consensus 330 ~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~----------------~~ 393 (720)
...+..++.. ...++|+||||+|.+.. ..+..+ +..++... .-
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHH---HHHHHTSCCCC---------------
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHH---HHHHHhcccceeeccCcccccccccC
Confidence 1223333322 23468999999999832 122233 22222211 01
Q ss_pred CcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHH
Q 005003 394 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 394 ~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~e 472 (720)
..+.++++|+.+..|++.+++ ||...+.+++|+.+++.++++.......... +..+..++.++.| +++++.++++.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 246788899999999999999 9988899999999999999998765433332 2236788888876 67899999999
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 473 AAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 473 Aa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
+...|..++...||.+++.++++..
T Consensus 226 ~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 226 VRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999988888899999999999875
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=3.5e-17 Score=178.11 Aligned_cols=235 Identities=20% Similarity=0.226 Sum_probs=143.2
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhh-----------------hhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005003 257 DDVAGVDEAKQDFMEVVEF-LKKPERF-----------------TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 318 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~-l~~p~~~-----------------~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf 318 (720)
++|+|++++|+.+...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999987732 1111100 001123466899999999999999999999999999
Q ss_pred EEEechhhH-HHHhhhc-hHHHHHHHHHHH----hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-
Q 005003 319 FSISGSEFV-EMFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE- 391 (720)
Q Consensus 319 ~~vs~s~~~-~~~~G~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~- 391 (720)
+.++|+.+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.......+......++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 334555555432 336789999999999765433222222222346677777777531
Q ss_pred ------------------CCCcEEEEEEeCCC-----------------------------------------Cccchhh
Q 005003 392 ------------------GNTGIIVIAATNRA-----------------------------------------DILDSAL 412 (720)
Q Consensus 392 ------------------~~~~ViVIaaTN~p-----------------------------------------~~LD~AL 412 (720)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12457888888721 1245666
Q ss_pred cCCCcccceeeecCCCHHHHHHHHHHh-----------h--cCCCCc-ccccHHHHHHhCC--CCcHHHHHHHHHHHHHH
Q 005003 413 LRPGRFDRQVTVDVPDIRGRTEILKVH-----------G--SNKKFD-ADVSLDVIAMRTP--GFSGADLANLLNEAAIL 476 (720)
Q Consensus 413 lrpgRFdr~I~i~~Pd~~eR~~IL~~~-----------l--~~~~l~-~dvdl~~LA~~t~--G~SgadL~~lv~eAa~~ 476 (720)
++ ||+..+.+++++.++...|+... + .+..+. .+..++.++.... ..+.++|.++++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 66 88888999999999998888621 1 111111 1112555666533 35788999999988877
Q ss_pred HHHhCC------CccCHHHHHHH
Q 005003 477 AGRRGK------AAISSKEIDDS 493 (720)
Q Consensus 477 A~r~~~------~~It~~dl~~A 493 (720)
+..+.. ..|+.+++..+
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHhhccCCCCCEEEEeHHHhcCC
Confidence 655321 24777777553
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=1.5e-17 Score=159.95 Aligned_cols=160 Identities=24% Similarity=0.413 Sum_probs=118.0
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+.+|++++|.++..+++.+.+. . ..+++++|+||||||||++|+++++++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 35679999999998877666542 2 235689999999999999999999986 7899999
Q ss_pred echhhH--HHHhhhchHHHHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 322 SGSEFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 322 s~s~~~--~~~~G~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
+++++. ..+.+.....++.++..+. ...|+||+|||+|.+...+.. .........+..++. ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------cCCeEE
Confidence 998876 2344555667778887664 456889999999999654321 111222334444442 356788
Q ss_pred EEEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHH
Q 005003 399 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEIL 436 (720)
Q Consensus 399 IaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL 436 (720)
|++||.++ .+++++.+ ||+ .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 99998876 68999999 998 6999999999998875
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=2e-16 Score=169.82 Aligned_cols=224 Identities=17% Similarity=0.240 Sum_probs=159.0
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc------CCCEEEEechhh
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEF 326 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~------g~pf~~vs~s~~ 326 (720)
...+++++|.++..+.+.+.+..... ...+..++|+||||||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34568999999999888776643211 1345689999999999999999999988 899999998754
Q ss_pred HH------HH----------hhhchHH-HHHHHHHHHhc-CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc
Q 005003 327 VE------MF----------VGVGASR-VRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 388 (720)
Q Consensus 327 ~~------~~----------~G~~~~~-vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld 388 (720)
.. .. .+..... ...+++..... .|++|+|||+|.+..... ...+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 21 11 0111222 34444444443 389999999999854321 125566666665
Q ss_pred CccCCCcEEEEEEeCCC---CccchhhcCCCccc-ceeeecCCCHHHHHHHHHHhhcC----CCCcccccHHHHHHhCC-
Q 005003 389 GFEGNTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTP- 459 (720)
Q Consensus 389 g~~~~~~ViVIaaTN~p---~~LD~ALlrpgRFd-r~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~LA~~t~- 459 (720)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+..+ .++.++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHH
Confidence 44 34578999999976 467888888 675 48999999999999999887642 222222 2455666554
Q ss_pred -CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 460 -GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 460 -G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
..+++.+.++++.|...|..++...|+.+++..++....
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 136778889999999999888888999999999998764
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=6.7e-17 Score=172.62 Aligned_cols=213 Identities=20% Similarity=0.228 Sum_probs=150.9
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC------CCE
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPF 318 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g------~pf 318 (720)
..+.++..+.+|++++|.+++++.+...+. .. ..+ ++||+||||||||++|+++|++++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------NLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------TCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------CCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 455667788999999999999987776653 21 122 499999999999999999999854 468
Q ss_pred EEEechhhHHHHhhhchHHHHHHHHHHH----------------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHH
Q 005003 319 FSISGSEFVEMFVGVGASRVRDLFKKAK----------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ 382 (720)
Q Consensus 319 ~~vs~s~~~~~~~G~~~~~vr~lF~~A~----------------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~ 382 (720)
+.+++++... ...+++.+.... ...+.||||||+|.+. .. ..+.
T Consensus 93 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~---~~~~ 152 (353)
T 1sxj_D 93 LELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------AD---AQSA 152 (353)
T ss_dssp EEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HH---HHHH
T ss_pred EEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HH---HHHH
Confidence 8888776321 112222221111 1245699999999983 12 2344
Q ss_pred HHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCC
Q 005003 383 LLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGF 461 (720)
Q Consensus 383 LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~ 461 (720)
|+..++.. ..+..+|.+||.++.+++++.+ |+. .+.+++|+.++...+++..+...... .+..++.++..+.|
T Consensus 153 Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G- 226 (353)
T 1sxj_D 153 LRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG- 226 (353)
T ss_dssp HHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-
T ss_pred HHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 55555533 3456777788999999999999 886 88999999999999998877554332 22347788888876
Q ss_pred cHHHHHHHHHHHHHHHHHhCCC-ccCHHHHHHHHH
Q 005003 462 SGADLANLLNEAAILAGRRGKA-AISSKEIDDSID 495 (720)
Q Consensus 462 SgadL~~lv~eAa~~A~r~~~~-~It~~dl~~Al~ 495 (720)
+.+.+.++++.+...+.+.+.. .|+.+|+.+++.
T Consensus 227 ~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 227 DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 6778888888888777555444 799999987654
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=5.9e-17 Score=170.48 Aligned_cols=203 Identities=20% Similarity=0.281 Sum_probs=139.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-----
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 328 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~----- 328 (720)
++++|++++++.+...+......-. ...+++.++||+||||||||++|+++|+.+ +.|++.++|+.+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 5688999999999988876421100 001233479999999999999999999987 56899999987643
Q ss_pred HHhhhch-----HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------CCC
Q 005003 329 MFVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNT 394 (720)
Q Consensus 329 ~~~G~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~~ 394 (720)
.+.|... .....+........+++|||||+|.+. .. .++.|+..++... .-.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~---~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PD---VFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HH---HHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HH---HHHHHHHHHhcCEEEcCCCCEEECC
Confidence 2222110 000122333344556899999999982 22 4445555554321 113
Q ss_pred cEEEEEEeCC--------------------------CCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC-----
Q 005003 395 GIIVIAATNR--------------------------ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----- 443 (720)
Q Consensus 395 ~ViVIaaTN~--------------------------p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~----- 443 (720)
++++|+|||. ...+++++++ ||+..+.+++|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998 4578889998 999999999999999999998876542
Q ss_pred --CCcc---cccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 005003 444 --KFDA---DVSLDVIAMRTP--GFSGADLANLLNEAAILAG 478 (720)
Q Consensus 444 --~l~~---dvdl~~LA~~t~--G~SgadL~~lv~eAa~~A~ 478 (720)
.... +..++.++.... ..+.++|.++++.+...+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1111 222566777665 6789999999998877653
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=5.4e-17 Score=192.31 Aligned_cols=223 Identities=21% Similarity=0.325 Sum_probs=162.8
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+-+|++++|.++..+.+.+++. . ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34589999999998887666553 2 234589999999999999999999976 6678888
Q ss_pred echhhH--HHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEE
Q 005003 322 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 399 (720)
Q Consensus 322 s~s~~~--~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVI 399 (720)
+++.+. ..+.|....+++.+|+.+....++||||||+|.+.+.++. ........+.|...+ .+.++.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~~~L~~~l----~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIKPLL----SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-----SSCHHHHHHHHSSCS----SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-----CcchHHHHHHHHHHH----hCCCeEEE
Confidence 887776 3567778889999999998878999999999999755432 111223333333333 35678999
Q ss_pred EEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC------CCcccccHHHHHHhC-----CCCcH
Q 005003 400 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK------KFDADVSLDVIAMRT-----PGFSG 463 (720)
Q Consensus 400 aaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~------~l~~dvdl~~LA~~t-----~G~Sg 463 (720)
++||.++ .+|++|.+ ||+ .+.++.|+.+++.+|++.+.... .+..+ .+..++..+ ..+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9998754 57899999 998 79999999999999998765431 22211 244444433 34567
Q ss_pred HHHHHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHHc
Q 005003 464 ADLANLLNEAAILAGR----RGKAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 464 adL~~lv~eAa~~A~r----~~~~~It~~dl~~Al~~v~~ 499 (720)
..+..++++|+..+.. .+...|+.+|+.+++.+...
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 7888999999877655 34568999999999988753
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=7.7e-17 Score=181.23 Aligned_cols=207 Identities=22% Similarity=0.332 Sum_probs=140.6
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEE
Q 005003 250 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 319 (720)
Q Consensus 250 ~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~ 319 (720)
...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 34566899999999999987776642 123479999999999999999999986 78899
Q ss_pred EEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEE
Q 005003 320 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 399 (720)
Q Consensus 320 ~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVI 399 (720)
.++++ ..|.|....+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~vI 295 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCI 295 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEEE
Confidence 99988 66778888889999999998889999999 10 113344555554 4579999
Q ss_pred EEeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-----cccHHHHHHhC-----CCCcHH
Q 005003 400 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-----DVSLDVIAMRT-----PGFSGA 464 (720)
Q Consensus 400 aaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-----dvdl~~LA~~t-----~G~Sga 464 (720)
++||.++ .+|+++.| ||. .|.|+.|+.+++..|++.++....... +..+..++..+ ..+.+.
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCc
Confidence 9999987 68999999 998 599999999999999998876632211 11234444432 234455
Q ss_pred HHHHHHHHHHHHHHHhCCC-ccCHHHHHHHHHH
Q 005003 465 DLANLLNEAAILAGRRGKA-AISSKEIDDSIDR 496 (720)
Q Consensus 465 dL~~lv~eAa~~A~r~~~~-~It~~dl~~Al~~ 496 (720)
....++++|+..+..+... .-...+++..+.+
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 7778888877666554432 2334444444444
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=7.5e-16 Score=166.26 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=158.6
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCc--eEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhH
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 327 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~pr--gVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~ 327 (720)
..+++++|.++..+.+.+.+...... ..+. .++|+||||||||++++++++++ +.++++++|+...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34589999999999998887653211 1233 79999999999999999999988 6789999976532
Q ss_pred H------HHh----------hhchHHHH-HHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC
Q 005003 328 E------MFV----------GVGASRVR-DLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 389 (720)
Q Consensus 328 ~------~~~----------G~~~~~vr-~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg 389 (720)
. ... +.....+. .+..... ...|++|+|||+|.+ + ...++.|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~---~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------A---PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------C---HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------c---hHHHHHHHHHHHh
Confidence 1 111 11112222 2222222 245899999999998 1 2345566666554
Q ss_pred ccC--CCcEEEEEEeCCC---CccchhhcCCCcccc-eeeecCCCHHHHHHHHHHhhcC----CCCcccccHHHHHHhCC
Q 005003 390 FEG--NTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTP 459 (720)
Q Consensus 390 ~~~--~~~ViVIaaTN~p---~~LD~ALlrpgRFdr-~I~i~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~LA~~t~ 459 (720)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..+. +..++.++..+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS-EDILQMIADITG 228 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC-HHHHHHHHHHHS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHh
Confidence 432 2578999999987 678888887 8875 7999999999999999887653 2222 233677787773
Q ss_pred --------CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 005003 460 --------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 498 (720)
Q Consensus 460 --------G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~ 498 (720)
+.+++.+.++++.|...|..++...|+.+++..++....
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 347888999999999999888889999999999988764
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=2e-16 Score=166.19 Aligned_cols=206 Identities=23% Similarity=0.256 Sum_probs=147.1
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEE
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 320 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~ 320 (720)
.+.++..+.+|++++|++++++.+.+.+.. ...| ++||+||||||||++|+++++++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 355677888999999999999887766532 1223 49999999999999999999986 456888
Q ss_pred EechhhHHHHhhhchHHHHHHHHHHH------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 321 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 321 vs~s~~~~~~~G~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
+++++... ...+++.+.... ...+++|+|||+|.+. ....+.|+..++.. ..
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~L~~~le~~--~~ 131 (319)
T 2chq_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------------ADAQAALRRTMEMY--SK 131 (319)
T ss_dssp EETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------------HHHHHTTGGGTSSS--SS
T ss_pred EeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------------HHHHHHHHHHHHhc--CC
Confidence 88876421 112222222221 1447899999999983 12456677777643 45
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
++++|++||.++.+++++.+ |+. .+.+++|+.+++.+++..++....... +..++.++..+.| +.+.+.++++.+
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 68899999999999999999 776 899999999999999998877654432 2236677766654 566666666655
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~Al 494 (720)
... ...|+.+++.+++
T Consensus 208 ~~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 208 AAI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HHS-----SSCBCHHHHHHHT
T ss_pred HHc-----CCCCCHHHHHHHH
Confidence 432 3468888887664
No 63
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=5.6e-16 Score=160.18 Aligned_cols=207 Identities=20% Similarity=0.265 Sum_probs=125.7
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhHHHH
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMF 330 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~~~~ 330 (720)
.+|++++|.+++.+.+.+.+..+... +.++||+||||||||++|++++.... .||++++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 47999999999999988877765332 34899999999999999999999874 799999998864321
Q ss_pred -----hhhchHH-------HHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc-----C-ccC
Q 005003 331 -----VGVGASR-------VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----G-FEG 392 (720)
Q Consensus 331 -----~G~~~~~-------vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld-----g-~~~ 392 (720)
.|..... ....|..+ .+++|||||||.+. ...+..+.+++..-. + ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccc
Confidence 1211000 01123332 35799999999983 233334444443211 0 011
Q ss_pred CCcEEEEEEeCCC-------CccchhhcCCCcccceeeecCCCHHHHHH----HHHHhhc----CCCCc--ccc---cHH
Q 005003 393 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NKKFD--ADV---SLD 452 (720)
Q Consensus 393 ~~~ViVIaaTN~p-------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~----IL~~~l~----~~~l~--~dv---dl~ 452 (720)
..++.+|+|||.+ ..++++|.+ ||+ .+.+..|+.++|.+ +++.++. ..... ..+ .++
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 2467899999974 136677877 786 36777888877643 3333321 11111 122 245
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 005003 453 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 490 (720)
Q Consensus 453 ~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl 490 (720)
.+.......+.++|.++++.+...+ ....|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 5655655568899999999988766 2345666555
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=5.9e-16 Score=183.59 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=138.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCc-eEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~pr-gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G 332 (720)
++++|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.||+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 6799999999999998876542211 011233 69999999999999999999987 789999999999876544
Q ss_pred hchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------CCCcEEEEEEeC
Q 005003 333 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGIIVIAATN 403 (720)
Q Consensus 333 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~~~ViVIaaTN 403 (720)
. ...++...+...++||||||||.+ +. .+++.|+..|+.-. ...++++|+|||
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKA-----------HP---DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGS-----------CH---HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred c----cchhhHHHHhCCCeEEEEeCcccc-----------CH---HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 3 222344455567799999999987 22 34455555554321 234689999999
Q ss_pred CCCc------------cchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC-------CCcccc---cHHHHHH--hCC
Q 005003 404 RADI------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------KFDADV---SLDVIAM--RTP 459 (720)
Q Consensus 404 ~p~~------------LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~-------~l~~dv---dl~~LA~--~t~ 459 (720)
.+.. ++|++++ ||+..|.+++|+.+++..|++.++... .....+ .++.++. ..+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 7543 7888888 999999999999999999998776432 111122 2455655 345
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 005003 460 GFSGADLANLLNEAAILA 477 (720)
Q Consensus 460 G~SgadL~~lv~eAa~~A 477 (720)
.++.++|+++++.+...+
T Consensus 707 ~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 707 EYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTTTTHHHHHHHHTHHH
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 577888999888765444
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=5.8e-16 Score=183.67 Aligned_cols=191 Identities=23% Similarity=0.334 Sum_probs=137.9
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEE
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 320 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~ 320 (720)
..+-+|++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +++++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 4556899999999999988776642 223479999999999999999999986 888998
Q ss_pred EechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEE
Q 005003 321 ISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 400 (720)
Q Consensus 321 vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIa 400 (720)
+++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..++ +..+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEEe
Confidence 888 456778888899999999999999999999 10 113345555554 56799999
Q ss_pred EeCCCC-----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccc-----cHHHHHHh-----CCCCcHHH
Q 005003 401 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-----SLDVIAMR-----TPGFSGAD 465 (720)
Q Consensus 401 aTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dv-----dl~~LA~~-----t~G~Sgad 465 (720)
+||..+ .+|+++.| ||. .|.++.|+.+++.+|++.+.........+ .+..++.. +.++.+..
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999988 69999999 995 69999999999999999887664322222 13333332 34677888
Q ss_pred HHHHHHHHHHHHHHhC
Q 005003 466 LANLLNEAAILAGRRG 481 (720)
Q Consensus 466 L~~lv~eAa~~A~r~~ 481 (720)
...++.+|+..+..+.
T Consensus 374 ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8889999887776554
No 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.3e-15 Score=158.62 Aligned_cols=206 Identities=21% Similarity=0.244 Sum_probs=145.2
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC-----CCEEE
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS 320 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g-----~pf~~ 320 (720)
.+.++..+.+|++++|++++++.+.+.+..- ..| ++||+||||||||++|+++++++. .+++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 4556678889999999999999988877532 122 599999999999999999999863 35788
Q ss_pred EechhhHHHHhhhchHHHHHHHHHHH------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 321 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 321 vs~s~~~~~~~G~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
+++++.... ..++..+.... ...+++|+|||+|.+. . ...+.|+..++. ...
T Consensus 82 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~---~~~~~L~~~le~--~~~ 139 (327)
T 1iqp_A 82 LNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------Q---DAQQALRRTMEM--FSS 139 (327)
T ss_dssp EETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------H---HHHHHHHHHHHH--TTT
T ss_pred eeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------H---HHHHHHHHHHHh--cCC
Confidence 887654321 11222222211 1457899999999982 1 234555555553 245
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
++++|++||.++.+++++.+ |+. .+.+++|+.++..++++..+...... .+..++.++..+.| +.+.+.++++.+
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 68888899999999999998 776 78999999999999999887655432 22236677777755 667777777655
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~Al 494 (720)
.. ....|+.+++..++
T Consensus 216 ~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 216 AA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HT-----TCSEECHHHHHHHT
T ss_pred Hh-----cCCCCCHHHHHHHH
Confidence 42 23468888776654
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=2.9e-15 Score=161.17 Aligned_cols=206 Identities=19% Similarity=0.278 Sum_probs=149.6
Q ss_pred cccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 005003 248 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 317 (720)
Q Consensus 248 ~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---------- 317 (720)
.++..+.+|++++|.+++++.+.+.+..- +.|..+||+||||||||++|+++|+.+++.
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34566778999999999999988877532 234579999999999999999999987542
Q ss_pred --------------EEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHH
Q 005003 318 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 379 (720)
Q Consensus 318 --------------f~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 379 (720)
++.++++. ..+...++++++.+.. ..+.||+|||+|.+. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~ 135 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHS 135 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHH
Confidence 22222211 0122346677766542 346899999999982 124
Q ss_pred HHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcc-cccHHHHHHhC
Q 005003 380 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRT 458 (720)
Q Consensus 380 ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~LA~~t 458 (720)
.+.|+..++. ...++++|++||.++.+++.+.+ |+ ..+.++.|+.++..++++.++....... +..+..++..+
T Consensus 136 ~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 5666666664 34578899999999999999998 76 5899999999999999998875443322 22367788888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 459 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 459 ~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
.| +++++.++++.+...+ ...|+.+++.+++
T Consensus 211 ~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 65 7888889888876433 4569999887665
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.7e-16 Score=168.24 Aligned_cols=159 Identities=8% Similarity=0.061 Sum_probs=115.4
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEEechhhHH
Q 005003 259 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE 328 (720)
Q Consensus 259 I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~vs~s~~~~ 328 (720)
+.|.++..+++...+...- ....|.+++|+||||||||++++++++++ ++.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i--------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 6667777776666554422 12346789999999999999999999987 35688899865432
Q ss_pred ----------HHhh------hchHHHHHHHHHH--HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCc
Q 005003 329 ----------MFVG------VGASRVRDLFKKA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 390 (720)
Q Consensus 329 ----------~~~G------~~~~~vr~lF~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~ 390 (720)
.+.| .....++..|... ....++||+|||+|.+. .+..+..++....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--
Confidence 2222 2345677888865 35668999999999994 1346666665432
Q ss_pred cCCCcEEEEEEeCCCCc----cchhhcCCCccc-ceeeecCCCHHHHHHHHHHhhcC
Q 005003 391 EGNTGIIVIAATNRADI----LDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 391 ~~~~~ViVIaaTN~p~~----LD~ALlrpgRFd-r~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
..+.+++||+.+|..+. |++++.+ ||. +.|.|++++.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23567999999998764 4556666 887 58999999999999999988754
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.9e-15 Score=158.99 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=146.6
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEE
Q 005003 247 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 321 (720)
Q Consensus 247 ~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~v 321 (720)
+.++..+.+|++++|.++.++.+.+.+.. ...|. ++|+||||+|||++|+++++++ +.+++.+
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 34556778999999999999988887642 12344 9999999999999999999985 4567888
Q ss_pred echhhHHHHhhhchHHHHHHHHHHH-------hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 322 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 322 s~s~~~~~~~G~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
++++.. +...++++++... ...+++|+|||+|.+. .. ..+.|+..++. ...
T Consensus 79 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~---~~~~L~~~le~--~~~ 136 (323)
T 1sxj_B 79 NASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AG---AQQALRRTMEL--YSN 136 (323)
T ss_dssp CTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HH---HHHTTHHHHHH--TTT
T ss_pred cCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HH---HHHHHHHHHhc--cCC
Confidence 876521 2344555555544 2347899999999983 11 23445555543 245
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
++++|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...... .+..++.++..+.| +.+.+.++++.+
T Consensus 137 ~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67888899999999999998 775 89999999999999998876543322 12236677777755 566666666665
Q ss_pred HHHHHHhCCCccCHHHHHHHHH
Q 005003 474 AILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 474 a~~A~r~~~~~It~~dl~~Al~ 495 (720)
... ...|+.+++.+++.
T Consensus 213 ~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 213 VAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHH-----HSSBCHHHHHHHHT
T ss_pred Hhc-----CCCcCHHHHHHHHC
Confidence 532 14688888877653
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=8.4e-16 Score=184.67 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=136.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEE
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 320 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~ 320 (720)
..+.+|++++|.++..+.+.+++. . ..+++++|+||||||||++|+++|+++ +.++++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 346789999999987777666552 2 224579999999999999999999987 889999
Q ss_pred EechhhH--HHHhhhchHHHHHHHHHHHhc-CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEE
Q 005003 321 ISGSEFV--EMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 397 (720)
Q Consensus 321 vs~s~~~--~~~~G~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~Vi 397 (720)
++++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.+.. .+.......+..++ + ..++.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l---~----~~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPAL---A----RGELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH---H----TTCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHH---h----CCCeE
Confidence 9999887 467788888999999999875 6899999999999654322 11112222333333 2 35678
Q ss_pred EEEEeCCCC----ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC------CCcccccHHHHHHh-----CCCCc
Q 005003 398 VIAATNRAD----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK------KFDADVSLDVIAMR-----TPGFS 462 (720)
Q Consensus 398 VIaaTN~p~----~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~------~l~~dvdl~~LA~~-----t~G~S 462 (720)
+|++||.++ .+|+++.| ||+. +.++.|+.+++.+|++.++... .+. +..+..++.. +..+.
T Consensus 302 ~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRL 377 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCT
T ss_pred EEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccC
Confidence 999999765 47999999 9984 9999999999999998765432 122 1123444443 45677
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005003 463 GADLANLLNEAAILAGRR 480 (720)
Q Consensus 463 gadL~~lv~eAa~~A~r~ 480 (720)
+.....++.+|+..+..+
T Consensus 378 p~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 378 PDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 888889999988777654
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.63 E-value=5.4e-16 Score=149.17 Aligned_cols=153 Identities=25% Similarity=0.432 Sum_probs=111.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----------CCCEEEE
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 321 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----------g~pf~~v 321 (720)
.+.+|++++|.++..+.+.+.+ .. ..+++++|+||||||||++|+++++++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred hccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3568999999998777666554 22 224589999999999999999999986 7889999
Q ss_pred echhhHHH--HhhhchHHHHHHHHHHHhc-CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 322 SGSEFVEM--FVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 322 s~s~~~~~--~~G~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
+++.+... +.+.....++.++..+... .|++|||||+|.+...+.. ..........+..++ + ..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~---~----~~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPML---A----RGELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHH---H----TTCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHH---h----cCCeeE
Confidence 98877642 3455556677788777654 6889999999999644331 111122223333333 2 356889
Q ss_pred EEEeCCCC-----ccchhhcCCCcccceeeecCCC
Q 005003 399 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPD 428 (720)
Q Consensus 399 IaaTN~p~-----~LD~ALlrpgRFdr~I~i~~Pd 428 (720)
|++||.++ .+|+++++ ||+ .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99999765 58999999 998 58998886
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=9.7e-16 Score=181.59 Aligned_cols=200 Identities=18% Similarity=0.261 Sum_probs=139.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH-------
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM------- 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~------- 329 (720)
++++|++++++.+...+...+..-. ...++..++||+||||||||++|+++|+.++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999998887765431100 001233479999999999999999999999999999999998653
Q ss_pred -----HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccC---------CCc
Q 005003 330 -----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTG 395 (720)
Q Consensus 330 -----~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~---------~~~ 395 (720)
|+|.... ..+....+...++||||||||.+ +. .+++.|+..||.-.- -.+
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~---~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HP---DVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CH---HHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CH---HHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 3332221 22344455566799999999987 22 355566666653210 146
Q ss_pred EEEEEEeCCCC-------------------------ccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC-------
Q 005003 396 IIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK------- 443 (720)
Q Consensus 396 ViVIaaTN~p~-------------------------~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~------- 443 (720)
++||+|||.+. .++|++++ |||..|.+++|+.+++..|++.++...
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 88999999743 67888998 999999999999999999998877532
Q ss_pred --CCc-ccccHHHHHHhC--CCCcHHHHHHHHHHHHHHH
Q 005003 444 --KFD-ADVSLDVIAMRT--PGFSGADLANLLNEAAILA 477 (720)
Q Consensus 444 --~l~-~dvdl~~LA~~t--~G~SgadL~~lv~eAa~~A 477 (720)
.+. .+..++.++... ..++.++|.++++.+...+
T Consensus 677 ~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp TEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred CcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 111 111245555543 3455788888888776543
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.63 E-value=5.7e-16 Score=175.32 Aligned_cols=209 Identities=20% Similarity=0.211 Sum_probs=134.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechh-hHHHHhhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVEMFVGV 333 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~-~~~~~~G~ 333 (720)
..++|.+++++.+...+.. ..++||+||||||||++|+++|+.++ .+|..+++.- -.+.+.|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4688999988766554421 23799999999999999999999884 4666666531 11222231
Q ss_pred -c-hH-HHHHHHHHHHhc---CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCcEEEE
Q 005003 334 -G-AS-RVRDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 399 (720)
Q Consensus 334 -~-~~-~vr~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~~~ViVI 399 (720)
. .. .-...|..+... .++|||||||+.+. ..+.+.|+..|+... ..+..++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 1 10 012233322222 46899999998762 234555666664211 11122467
Q ss_pred EEeCCC-C--ccchhhcCCCcccceeeecCCCH-HHHHHHHHHhhcCC-------------------------CCccccc
Q 005003 400 AATNRA-D--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSNK-------------------------KFDADVS 450 (720)
Q Consensus 400 aaTN~p-~--~LD~ALlrpgRFdr~I~i~~Pd~-~eR~~IL~~~l~~~-------------------------~l~~dvd 450 (720)
+|||.+ + ...+++++ ||...+.+++|+. +++..|++.+.... .+.+++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 788853 2 24469999 9998999999987 67888988764311 111111
Q ss_pred HHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 451 LDVIAMR---------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 451 l~~LA~~---------t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
.+.++.. ..|.|++.+..+++.|...|..+|+..|+.+|+. ++..+
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 2223322 3588999999999999999999999999999998 44333
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.62 E-value=7.2e-16 Score=163.87 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=132.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH---
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF--- 330 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~--- 330 (720)
++++|.+++.+++.+.+..+.. .+.+|||+||||||||++|++++... +.||+.++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4689999999999988876643 24489999999999999999999965 6899999998765422
Q ss_pred --hhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------C
Q 005003 331 --VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------G 392 (720)
Q Consensus 331 --~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~ 392 (720)
.|... ......|+.+. +++|||||||.+. ... ...|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----------~~~---q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----------PLM---QVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----------HHH---HHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----------HHH---HHHHHHHHhcCEeeecCCcccc
Confidence 22110 01223455553 4699999999983 222 334444444321 1
Q ss_pred CCcEEEEEEeCCC-------CccchhhcCCCcccceeeecCCCHHHHHH----HHHHhhcC----C-----CCcccccHH
Q 005003 393 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN----K-----KFDADVSLD 452 (720)
Q Consensus 393 ~~~ViVIaaTN~p-------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~----IL~~~l~~----~-----~l~~dvdl~ 452 (720)
..++.||+|||.+ ..+++.|.. ||+ .+.+..|+..+|.+ +++.++.. . .+. +..++
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s-~~a~~ 210 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFT-PQAMD 210 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBC-HHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCC-HHHHH
Confidence 2458999999985 124455555 665 67778888777644 44443321 1 121 12256
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 005003 453 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 491 (720)
Q Consensus 453 ~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~ 491 (720)
.+.......+.++|.++++.|...+ ....|+.+|+.
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 6777765568899999999988765 34567766664
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=1.3e-14 Score=155.63 Aligned_cols=210 Identities=21% Similarity=0.246 Sum_probs=139.8
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC-----CEEE
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFS 320 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~-----pf~~ 320 (720)
.+.++..+.+|++++|++++++.+...+.. .+.|. ++|+||||||||++|+++|+.+.. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 456677888999999999999988877652 12343 999999999999999999998643 3566
Q ss_pred EechhhHHHHhhhchHHHHHHHHHHHh------cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 005003 321 ISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 394 (720)
Q Consensus 321 vs~s~~~~~~~G~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~ 394 (720)
+++++.. +...+++.+..... ..+.|++|||+|.+. . ...+.|+..++.. ..
T Consensus 82 ~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~---~~~~~L~~~le~~--~~ 139 (340)
T 1sxj_C 82 LNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------N---AAQNALRRVIERY--TK 139 (340)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------H---HHHHHHHHHHHHT--TT
T ss_pred EcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------H---HHHHHHHHHHhcC--CC
Confidence 6665421 12334444433321 236899999999982 1 2345556655533 34
Q ss_pred cEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC--CCcccccHHHHHHhCCCCcHHHHHHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~--~l~~dvdl~~LA~~t~G~SgadL~~lv~e 472 (720)
...+|.+||.++.+.+++.+ |+. .+.+..++.++..+++...+... .+.++ .+..++..+.| +.+.+.++++.
T Consensus 140 ~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~ 214 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQS 214 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTT
T ss_pred CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHH
Confidence 57788889999999999999 776 78899999999888888877433 33322 35566666544 44445455544
Q ss_pred HHHHHHHhCCCccCHHHHHHHH
Q 005003 473 AAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 473 Aa~~A~r~~~~~It~~dl~~Al 494 (720)
+...+...+...|+.+++.+++
T Consensus 215 ~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 215 CKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHhcCCcccccccHHHHHHHh
Confidence 4332222223367777766553
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=5.8e-16 Score=179.00 Aligned_cols=219 Identities=21% Similarity=0.176 Sum_probs=138.9
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE----echhhHHH---
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----SGSEFVEM--- 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v----s~s~~~~~--- 329 (720)
..|+|++++|+.+.-.+..- .+........+...++||+||||||||++|+++|+.++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 56889998887653222110 00011111223334899999999999999999999987765542 22222111
Q ss_pred --HhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCcE
Q 005003 330 --FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGI 396 (720)
Q Consensus 330 --~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-----------~~~~V 396 (720)
+.|... .....+..| ..+|+||||||.+. ... .+.|+..|+.-. .+.++
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~-----------~~~---q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMR-----------DED---RVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCCC-----------SHH---HHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhCC-----------HhH---hhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 111100 001123333 34799999999982 223 344444444211 13468
Q ss_pred EEEEEeCCCC-------------ccchhhcCCCcccc-eeeecCCCHHHHHHHHHHhhcCCCC-------c---------
Q 005003 397 IVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKKF-------D--------- 446 (720)
Q Consensus 397 iVIaaTN~p~-------------~LD~ALlrpgRFdr-~I~i~~Pd~~eR~~IL~~~l~~~~l-------~--------- 446 (720)
.||||||++. .+++++++ |||. .+..+.|+.+ ...|.+..+..... .
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 8999999876 89999999 9985 5556777777 77777766543210 0
Q ss_pred ----------ccccHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 447 ----------ADVSLDVIAMR--------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 447 ----------~dvdl~~LA~~--------------t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
.+...+.+... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-+
T Consensus 513 ~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 513 YARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 01112333333 4578999999999999999999999999999999998754
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=1.4e-14 Score=174.11 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=139.1
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH--
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 330 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~-- 330 (720)
+++|+|++++++.+...+...+..-.. ..++..++||+||||||||++|+++|..+ +.+|+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999999988764321000 01222479999999999999999999988 7899999998876431
Q ss_pred ---hhh-----chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc---------CC
Q 005003 331 ---VGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 393 (720)
Q Consensus 331 ---~G~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~---------~~ 393 (720)
.|. +......+....+...+++|||||||.+ + ..+++.|+..|+.-. .-
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~---~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------H---PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS-----------C---HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------C---HHHHHHHHHHhccCceECCCCCEecc
Confidence 111 1111133444445566799999999987 2 235666666666321 11
Q ss_pred CcEEEEEEeCCC--------------------------CccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCC----
Q 005003 394 TGIIVIAATNRA--------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK---- 443 (720)
Q Consensus 394 ~~ViVIaaTN~p--------------------------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~---- 443 (720)
.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 368899999972 234566776 999999999999999999998776521
Q ss_pred -----CCc-ccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 005003 444 -----KFD-ADVSLDVIAMRTP--GFSGADLANLLNEAAILAG 478 (720)
Q Consensus 444 -----~l~-~dvdl~~LA~~t~--G~SgadL~~lv~eAa~~A~ 478 (720)
.+. .+..++.|+.... .++.++|.++++.+...+.
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 111 1122566676654 6788999999998876653
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=9.1e-14 Score=148.90 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=131.9
Q ss_pred cccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC---------
Q 005003 246 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 316 (720)
Q Consensus 246 ~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~--------- 316 (720)
.|.++..+.+|++++|++++++.+++.+. + ..+.|. ++|+||||+|||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 35677888999999999999887776551 1 123455 999999999999999999996421
Q ss_pred --------------------CEEEEechhhHHHHhhhchHHHHHHHHHHH--------------hcCCeEEEEccchhcc
Q 005003 317 --------------------PFFSISGSEFVEMFVGVGASRVRDLFKKAK--------------ENAPCIVFVDEIDAVG 362 (720)
Q Consensus 317 --------------------pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~--------------~~~P~ILfIDEID~l~ 362 (720)
+++.++.++... .....+++.++.+. ...|.||+|||+|.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L- 146 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL- 146 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-
Confidence 123333322100 00012455554442 225779999999997
Q ss_pred cccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcC
Q 005003 363 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 363 ~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
+.. ..+.++..++.. ..+..+|.+||.++.+.+++.+ |+ ..+.+++|+.++..++++..+..
T Consensus 147 ----------~~~---~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 147 ----------TKD---AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ----------CHH---HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----------CHH---HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 222 334455555533 3467888899999999999998 77 68999999999999999987754
Q ss_pred CCCc-c-cccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005003 443 KKFD-A-DVSLDVIAMRTPGFSGADLANLLNEAAIL 476 (720)
Q Consensus 443 ~~l~-~-dvdl~~LA~~t~G~SgadL~~lv~eAa~~ 476 (720)
.... . +..++.++..+.| +.+++.++++.+...
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 4332 1 3346778877765 677777777766543
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=1.1e-14 Score=137.39 Aligned_cols=132 Identities=21% Similarity=0.301 Sum_probs=90.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHH
Q 005003 258 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 337 (720)
Q Consensus 258 dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~ 337 (720)
+++|.+++.+++.+.+..+.. .+.+|||+||||||||++|++++...+ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 588999999999988876432 234799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC-Cc----cchhh
Q 005003 338 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-DI----LDSAL 412 (720)
Q Consensus 338 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p-~~----LD~AL 412 (720)
...+|+.+. +++|||||+|.+. ...+..+.+++.... +.++.+|+|||.+ +. +++.|
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYS-----------RNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCC-----------HHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCC-----------HHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHHH
Confidence 455666553 4799999999983 233344444444321 4568899999864 32 33344
Q ss_pred cCCCcccceeeecCCC
Q 005003 413 LRPGRFDRQVTVDVPD 428 (720)
Q Consensus 413 lrpgRFdr~I~i~~Pd 428 (720)
.. |+. .+.+..|+
T Consensus 129 ~~--rl~-~~~i~lPp 141 (143)
T 3co5_A 129 AG--LFS-ESVVRIPP 141 (143)
T ss_dssp HH--HSS-SEEEEECC
T ss_pred HH--Hhc-CcEEeCCC
Confidence 44 443 34555554
No 80
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=5.2e-13 Score=145.24 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=151.5
Q ss_pred CCccccccchHHHHHHHHHH-HHhcCchhhhhccCcCCceEEE--EccCCChHHHHHHHHHHhc---------CCCEEEE
Q 005003 254 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLL--VGPPGTGKTLLAKAIAGEA---------GVPFFSI 321 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv-~~l~~p~~~~~~g~~~prgVLL--~GPPGTGKT~LArAlA~e~---------g~pf~~v 321 (720)
...++++|.++..+++.+.+ ....... ...+..++| +||||+|||++++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34588999999999998887 6543210 012457999 9999999999999998876 5678888
Q ss_pred echh------hHHHHh---h-------hchHH-HHHHHHHHH-hcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHH
Q 005003 322 SGSE------FVEMFV---G-------VGASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 383 (720)
Q Consensus 322 s~s~------~~~~~~---G-------~~~~~-vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~L 383 (720)
+|.. +...+. + ..... ...+.+... ...|++|+|||+|.+...+. .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 8743 221111 1 11111 222222222 35689999999999843210 012345555
Q ss_pred HhhhcCccC-C--CcEEEEEEeCCCC---ccc---hhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCC---CcccccH
Q 005003 384 LTEMDGFEG-N--TGIIVIAATNRAD---ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK---FDADVSL 451 (720)
Q Consensus 384 L~~ldg~~~-~--~~ViVIaaTN~p~---~LD---~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~---l~~dvdl 451 (720)
+..++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++.... .-.+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555443321 2 6788998888765 345 66667 5655699999999999999987654211 1122235
Q ss_pred HHHHHhCC------CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 452 DVIAMRTP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 452 ~~LA~~t~------G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
..++..+. | +++.+.++++.|...|..++...++.+++..++...
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 67777777 5 678889999999988888888899999998888764
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.49 E-value=3.5e-14 Score=134.21 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhh
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV 333 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~ 333 (720)
.+++|.+++.+++.+.+..+... +.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSET----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTC----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 36899999999999888765432 3479999999999999999999986 78999 999876543
Q ss_pred chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 334 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 334 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
......|+.+. +++|||||||.+. ...+ ..|+..|.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~-----------~~~q---~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLT-----------REQQ---YHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSC-----------HHHH---HHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCC-----------HHHH---HHHHHHHhh--cCCCEEEEEECCcC
Confidence 23455666663 4699999999983 2233 334444432 23457889999974
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.41 E-value=1.1e-12 Score=152.00 Aligned_cols=220 Identities=21% Similarity=0.319 Sum_probs=133.4
Q ss_pred ccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCC---EEEEechh
Q 005003 249 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSE 325 (720)
Q Consensus 249 ~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~p---f~~vs~s~ 325 (720)
.+.++.+|++++|++.+++.+...+.. ..+++|+||||||||++|+++|+.+... .+.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 345677899999999999877766541 1379999999999999999999987432 12221110
Q ss_pred h------------------HHHHh--------------------------------------hhchHHHHHHHHH-----
Q 005003 326 F------------------VEMFV--------------------------------------GVGASRVRDLFKK----- 344 (720)
Q Consensus 326 ~------------------~~~~~--------------------------------------G~~~~~vr~lF~~----- 344 (720)
. .+... .........+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 0 00000 0000001112210
Q ss_pred ------------------HHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc----C------------c
Q 005003 345 ------------------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G------------F 390 (720)
Q Consensus 345 ------------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld----g------------~ 390 (720)
.....+.+|||||+|.+ +...+..+...|+.-. + .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 11224579999999998 2333344444443211 1 1
Q ss_pred cCCCcEEEEEEeCCC--CccchhhcCCCccc---ceeeecC--C-CHHHHHHHHHHhhcC-------CCCcccccHHHHH
Q 005003 391 EGNTGIIVIAATNRA--DILDSALLRPGRFD---RQVTVDV--P-DIRGRTEILKVHGSN-------KKFDADVSLDVIA 455 (720)
Q Consensus 391 ~~~~~ViVIaaTN~p--~~LD~ALlrpgRFd---r~I~i~~--P-d~~eR~~IL~~~l~~-------~~l~~dvdl~~LA 455 (720)
....++.||+|||+. +.++++|++ ||+ ..+.++. + +.+....+++...+. ..+.++ .+..+.
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~~Li 324 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVEEIV 324 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHHHHH
Confidence 112368899999986 679999999 986 2344332 2 233345555433221 112222 234444
Q ss_pred Hh---CCCC------cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 005003 456 MR---TPGF------SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 496 (720)
Q Consensus 456 ~~---t~G~------SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~ 496 (720)
+. ..|- +.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 32 3553 79999999999999999999999999999999864
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.41 E-value=2.6e-13 Score=170.48 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=111.5
Q ss_pred CCCCCccccccchHHHHHHHHHHHH-hc----------Cchhhhh------ccCc----------CCce--EEEEccCCC
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEF-LK----------KPERFTA------IGAR----------IPKG--VLLVGPPGT 301 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~-l~----------~p~~~~~------~g~~----------~prg--VLL~GPPGT 301 (720)
.+.++|+||.|.+++|+++.+.+.+ ++ .++.|+. .|.. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3458999999999999999998877 32 2556665 4444 6677 999999999
Q ss_pred hHHHHHHHHHHhc---CCCEEEEechhhH------------HHHhhh----chHHHHHHHHHHHhcCCeEEEEccchhcc
Q 005003 302 GKTLLAKAIAGEA---GVPFFSISGSEFV------------EMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 362 (720)
Q Consensus 302 GKT~LArAlA~e~---g~pf~~vs~s~~~------------~~~~G~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 362 (720)
|||+||++++.+. |-|.++++..+.. +.+++. +++.++.+|..|+..+||+||+||+|++.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998866 6677777776533 445556 78899999999999999999999999999
Q ss_pred cccC---CCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 363 RQRG---TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 363 ~~r~---~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
+.+. ........-..+.++|+|.+|++.....+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 8743 211111234567899999999998777888888 7776
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=1e-11 Score=133.36 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=113.2
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHHHhhhchHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 343 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~p------------------------f~~vs~s~~~~~~~G~~~~~vr~lF~ 343 (720)
+.|..+||+||||+|||++|+++|+.+.++ +..++..+ .-...+...++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 456789999999999999999999987543 22222210 001123456778877
Q ss_pred HHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCccc
Q 005003 344 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 419 (720)
Q Consensus 344 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFd 419 (720)
.+.. ..+.|++|||+|.+. ....|.|+..++. +..++++|.+||.++.+.+++++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 7643 336899999999982 2356778888874 45578899999999999999999 774
Q ss_pred ceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005003 420 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 473 (720)
Q Consensus 420 r~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eA 473 (720)
.+.++.|+.++..++++... .++ +..+..++..+.| +.+.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998875 222 2235667777765 566665655544
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.29 E-value=9.2e-12 Score=105.86 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=72.0
Q ss_pred cCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 005003 425 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 425 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~ 500 (720)
|+||.++|.+||+.|+++.++..++|++.+|..|.||||+||.++|++|++.|.+++...|+++||..|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999988899999999999999999999999999999999999999999999999998653
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.29 E-value=1.6e-11 Score=134.69 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=134.8
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH---
Q 005003 256 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 329 (720)
Q Consensus 256 f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~--- 329 (720)
+++++|.++..+++.+.+..+.... .+|+|+|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAE----------CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCC----------SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCC----------CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 5678899998888888887765443 369999999999999999998765 479999999876542
Q ss_pred --Hhhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--CccC----CC
Q 005003 330 --FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 394 (720)
Q Consensus 330 --~~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~~----~~ 394 (720)
..|... ......|+.|.. ++||||||+.+ +...+..+.++|+.-. .... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 222110 012345666543 59999999998 3344555555554311 1111 23
Q ss_pred cEEEEEEeCCCCccchhhcCCCccc-----c--eeeecCCCHHHHHHH----HHHhh----cCCCCc-ccc---cHHHHH
Q 005003 395 GIIVIAATNRADILDSALLRPGRFD-----R--QVTVDVPDIRGRTEI----LKVHG----SNKKFD-ADV---SLDVIA 455 (720)
Q Consensus 395 ~ViVIaaTN~p~~LD~ALlrpgRFd-----r--~I~i~~Pd~~eR~~I----L~~~l----~~~~l~-~dv---dl~~LA 455 (720)
++.+|+|||..- . .+.+.|+|. + .+.+..|+..+|.+- ++.++ .+.... ..+ .++.+.
T Consensus 272 ~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 688999999731 1 222234432 1 567888999888542 22222 111111 112 255566
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 005003 456 MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 494 (720)
Q Consensus 456 ~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al 494 (720)
...+-.+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 6666668899999999998876 34589999987544
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=107.82 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=73.6
Q ss_pred eecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 005003 423 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 500 (720)
Q Consensus 423 ~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~ 500 (720)
.-.+||.++|.+||+.++++.++..++|++.||+.|.||||+||.++|++|++.|.+++...|+++||..|++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 346899999999999999999998899999999999999999999999999999999999999999999999998764
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3.8e-11 Score=127.80 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=105.7
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc------CCCEEEEechhhHHHHhhhc
Q 005003 261 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEFVEMFVGVG 334 (720)
Q Consensus 261 G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~------g~pf~~vs~s~~~~~~~G~~ 334 (720)
|++++.+.+...+..-+ +..+|||||||+|||++|+++|+.+ ...++.++.++ ...+
T Consensus 1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 56677777776664222 2379999999999999999999874 34677777542 0234
Q ss_pred hHHHHHHHHHHHhcC----CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch
Q 005003 335 ASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 410 (720)
Q Consensus 335 ~~~vr~lF~~A~~~~----P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ 410 (720)
...+|++++.+...+ ..|++|||+|.+. ....|.||..|+. ++.++++|.+||.++.+.|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 456888888875432 3699999999982 2346778888874 4556888888899999999
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhh
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHG 440 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l 440 (720)
++++ | .+++++|+.++..+.++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 88999999999999988776
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.24 E-value=1.9e-11 Score=106.57 Aligned_cols=78 Identities=22% Similarity=0.483 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcc
Q 005003 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV 505 (720)
Q Consensus 428 d~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~~~~ 505 (720)
|.++|.+||+.|+++.++..++|++.||+.|.||||+||.++|++|++.|.+++...|+++||..|++++..+..++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999998877654
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=7.5e-11 Score=114.52 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred CCCCCccccccchH-HHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechh
Q 005003 251 NTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 325 (720)
Q Consensus 251 ~~~~~f~dI~G~de-~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~ 325 (720)
..+.+|+++++.++ .++.+..+..++.+.. ...+++++|+||||||||+|++++++.+ |..++++++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 35678999987543 3333333334443321 2235689999999999999999999876 77888899888
Q ss_pred hHHHHhhhchH-HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 326 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 326 ~~~~~~G~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
+.+.+...... ....+++.. ..|.+|+|||++..+ .+......+.+++.... ..+..+|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 87654321110 001222222 357899999998652 23445556666665442 134567778886
Q ss_pred C
Q 005003 405 A 405 (720)
Q Consensus 405 p 405 (720)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.16 E-value=8.2e-11 Score=153.86 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=97.8
Q ss_pred CceEEEEccCCChHHHHH-HHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHH---------------hcCCeEE
Q 005003 290 PKGVLLVGPPGTGKTLLA-KAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK---------------ENAPCIV 353 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LA-rAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~---------------~~~P~IL 353 (720)
.+++||+||||||||++| +++++..+.+++.++++...+ ...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 358999999999999999 555555578888888775432 233444444321 1235899
Q ss_pred EEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCC--------CcEEEEEEeCCCC-----ccchhhcCCCcccc
Q 005003 354 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRAD-----ILDSALLRPGRFDR 420 (720)
Q Consensus 354 fIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~--------~~ViVIaaTN~p~-----~LD~ALlrpgRFdr 420 (720)
||||+|.....+. +.....+.+.|+++ ..++... .++.+|||||+|. .++++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999997533221 23345566777764 2233211 2589999999994 89999999 99 6
Q ss_pred eeeecCCCHHHHHHHHHHhhcC
Q 005003 421 QVTVDVPDIRGRTEILKVHGSN 442 (720)
Q Consensus 421 ~I~i~~Pd~~eR~~IL~~~l~~ 442 (720)
.+.++.|+.+++..|+..+++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999887643
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.04 E-value=4.1e-10 Score=111.06 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCCCccccccchHHHH-HHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH
Q 005003 252 TGVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 327 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~-eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~ 327 (720)
...+|+++.+.+...+ .+..+..++..... ...|++++|+||||||||++|+++++++ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998774333 33333334332210 0124799999999999999999999877 7899999999887
Q ss_pred HHHhhhc-hHHHHHHHHHHHhcCCeEEEEccchhc
Q 005003 328 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 361 (720)
Q Consensus 328 ~~~~G~~-~~~vr~lF~~A~~~~P~ILfIDEID~l 361 (720)
..+.... ...+..++..... +++|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 6543211 1112233443332 359999999775
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.03 E-value=3.5e-10 Score=97.12 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCc
Q 005003 428 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 501 (720)
Q Consensus 428 d~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~ 501 (720)
|.++|.+||+.|+++.++..++|++.+|..|.||||+||.++|++|+..|.+++...|+++||..|+.++.+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999999888999999999999999999999999999999999999999999999999986654
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.98 E-value=1.3e-09 Score=121.25 Aligned_cols=213 Identities=17% Similarity=0.116 Sum_probs=122.3
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHH-HHhcCCCEEEEechhh-HHHHhhh---
Q 005003 259 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGSEF-VEMFVGV--- 333 (720)
Q Consensus 259 I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAl-A~e~g~pf~~vs~s~~-~~~~~G~--- 333 (720)
|.|++.+|..+.-.+. ....+ .+-.-++||.|+||| ||++|+++ ++-+.... ++++..- .....+.
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEc
Confidence 8999998775543332 11111 122237999999999 99999999 76554333 2322100 0001100
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcC-------ccCCCcEEEEEEeCC
Q 005003 334 --GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-------FEGNTGIIVIAATNR 404 (720)
Q Consensus 334 --~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg-------~~~~~~ViVIaaTN~ 404 (720)
+...-...+..|.. .++|||||+.+ .. .++..|++.|+. ..-+..+.||||+|.
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~---~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGA-----------PE---PHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTC-----------CH---HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhC-----------CH---HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 00000122333322 59999999998 22 234445554442 222456899999998
Q ss_pred CC-----------ccchhhcCCCcccce-eeecCCCHHHHH---------HHHHH---hhc----CCCCccccc--HHHH
Q 005003 405 AD-----------ILDSALLRPGRFDRQ-VTVDVPDIRGRT---------EILKV---HGS----NKKFDADVS--LDVI 454 (720)
Q Consensus 405 p~-----------~LD~ALlrpgRFdr~-I~i~~Pd~~eR~---------~IL~~---~l~----~~~l~~dvd--l~~L 454 (720)
.+ .|++++++ |||.. +.++.|+.+.-. +.++. +++ ...+.+++. +..+
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred ccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 65 78899999 99873 345666544311 11211 122 111222110 0000
Q ss_pred ------H--H------hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 005003 455 ------A--M------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 499 (720)
Q Consensus 455 ------A--~------~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~ 499 (720)
. . ...|.|++.+..+++-|..+|.-+++..|+.+|+.+|+.-+..
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 0 0 2568999999999999999999999999999999999876543
No 95
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.96 E-value=2.3e-09 Score=116.78 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=120.9
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC--CEEEEechhhHHH-----
Q 005003 257 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEM----- 329 (720)
Q Consensus 257 ~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~--pf~~vs~s~~~~~----- 329 (720)
.+++|.+....++.+.+..+.... ..++++|++||||+++|+++....+. +|+.++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 468899999988888887665432 26999999999999999999876643 3999999865432
Q ss_pred Hhhhch-------HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhc--CccC----CCcE
Q 005003 330 FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 396 (720)
Q Consensus 330 ~~G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ld--g~~~----~~~V 396 (720)
+.|... ..-...|+.|.. .+||||||+.+ +...+..+..+|+.-. .... ..++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 222111 111235666543 48999999998 3344445555554311 1111 1257
Q ss_pred EEEEEeCCCCccchhhcCCCcccc-------eeeecCCCHHHHHH----HHHHhhcC----CC-----CcccccHHHHHH
Q 005003 397 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSN----KK-----FDADVSLDVIAM 456 (720)
Q Consensus 397 iVIaaTN~p~~LD~ALlrpgRFdr-------~I~i~~Pd~~eR~~----IL~~~l~~----~~-----l~~dvdl~~LA~ 456 (720)
.+|+|||.. +. .....|+|.. .+.+..|+..+|.+ +++.++.+ .. +.+ ..++.|..
T Consensus 265 rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~L~~ 340 (368)
T 3dzd_A 265 RVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSE-ETKEYLMK 340 (368)
T ss_dssp EEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCH-HHHHHHHT
T ss_pred EEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCH-HHHHHHHh
Confidence 899999963 21 2223344432 66788899888743 22333221 11 221 22556666
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 005003 457 RTPGFSGADLANLLNEAAILA 477 (720)
Q Consensus 457 ~t~G~SgadL~~lv~eAa~~A 477 (720)
..+.-+.++|+|+++.|...+
T Consensus 341 ~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 665668899999999988765
No 96
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.93 E-value=3.1e-10 Score=97.43 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCcc
Q 005003 430 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME 502 (720)
Q Consensus 430 ~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v~~~~~ 502 (720)
++|.+||+.|+++.++..++|++.+|..|.||||+||.++|++|++.|.+++...|+++||..|+.++..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999988889999999999999999999999999999999999999999999999998865543
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.87 E-value=4.1e-08 Score=103.77 Aligned_cols=191 Identities=15% Similarity=0.104 Sum_probs=116.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh----
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF---- 326 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~---- 326 (720)
.+....+.++|.++..+.+.+ +. . ..++|+||+|+|||+|++.++++.+.+++++++...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344566789999887777665 42 2 279999999999999999999998878888887643
Q ss_pred -------HHHHhhh-----------------------------------chHHHHHHHHHHHhc--CCeEEEEccchhcc
Q 005003 327 -------VEMFVGV-----------------------------------GASRVRDLFKKAKEN--APCIVFVDEIDAVG 362 (720)
Q Consensus 327 -------~~~~~G~-----------------------------------~~~~vr~lF~~A~~~--~P~ILfIDEID~l~ 362 (720)
...+... ....+..+++..... .|.+|+|||+|.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 1110000 012244555555442 38999999999984
Q ss_pred cccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchh-----hc--CCCcccceeeecCCCHHHHHHH
Q 005003 363 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA-----LL--RPGRFDRQVTVDVPDIRGRTEI 435 (720)
Q Consensus 363 ~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~A-----Ll--rpgRFdr~I~i~~Pd~~eR~~I 435 (720)
... .......+..+... ..++.+|.+++....+... .. -.||+...+.+++.+.++..++
T Consensus 151 ~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp GCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 310 11122333333332 1356666666543222211 00 1236666889999999999999
Q ss_pred HHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHH
Q 005003 436 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNE 472 (720)
Q Consensus 436 L~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~e 472 (720)
+...+.......+. ...+...+.|. +.-+..++..
T Consensus 218 l~~~~~~~~~~~~~-~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFKD-YEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCCC-HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCCc-HHHHHHHhCCC-HHHHHHHHHH
Confidence 98765432222222 37778888875 4456555543
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.81 E-value=2.3e-07 Score=97.84 Aligned_cols=192 Identities=19% Similarity=0.176 Sum_probs=114.0
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH---
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--- 327 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~--- 327 (720)
.++..-+.++|.++..+.+.+.+.. | +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 3445567899999999888887653 1 3799999999999999999999875 7777775432
Q ss_pred ---------HHHh--------------------hhc----hHHHHHHHHHH----HhcCCeEEEEccchhcccccCCCCC
Q 005003 328 ---------EMFV--------------------GVG----ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIG 370 (720)
Q Consensus 328 ---------~~~~--------------------G~~----~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~ 370 (720)
..+. +.. ...+.++++.. ....|.+|+|||++.+.....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---- 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---- 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----
Confidence 1110 000 01223333322 222489999999999843100
Q ss_pred CCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccch---------hhcCCCcccceeeecCCCHHHHHHHHHHhhc
Q 005003 371 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS---------ALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 441 (720)
Q Consensus 371 ~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~---------ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~ 441 (720)
.........+..++.. . .++.+|.++.....++. .+ .||+...+.+++.+.++-.++++..+.
T Consensus 146 ~~~~~~~~~L~~~~~~---~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 RGGKELLALFAYAYDS---L---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTTHHHHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHh---c---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHH
Confidence 0112222333333322 1 35666666544221221 12 236666889999999999999987665
Q ss_pred CCCCc-ccccHHHHHHhCCCCcHHHHHHHHH
Q 005003 442 NKKFD-ADVSLDVIAMRTPGFSGADLANLLN 471 (720)
Q Consensus 442 ~~~l~-~dvdl~~LA~~t~G~SgadL~~lv~ 471 (720)
..... .+.....+...+.|+ +.-+..++.
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 43322 222356777778775 444555544
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=9.1e-09 Score=97.91 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 366 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 366 (720)
...++|+||+|+|||+|++++++.. |..++++++.++... +....|.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 3479999999999999999999977 777889988776542 112357899999998862
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC-CCCccc--hhhcCCCcccceeee
Q 005003 367 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILD--SALLRPGRFDRQVTV 424 (720)
Q Consensus 367 ~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN-~p~~LD--~ALlrpgRFdr~I~i 424 (720)
. ..++.+.+++..+. .....++|.||| .|+.+. +.+.+ |+..-..+
T Consensus 97 ------~-~~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 ------N-EEQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ------S-HHHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ------h-HHHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1 12444555555432 122222444555 455333 77777 77654433
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.81 E-value=1.3e-09 Score=116.32 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=72.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec--hhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccc
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG--SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 364 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~--s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 364 (720)
....+.++|+||||||||+||.++|.+.+.++++++. ++.++.+.......+..+++...+.. +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3344557999999999999999999876555444444 33222222233344445555555544 9999999998543
Q ss_pred cCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhh
Q 005003 365 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 412 (720)
Q Consensus 365 r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~AL 412 (720)
..... ......+.+.+++..|+++....++.+|+++| +...|+++
T Consensus 198 ~~~~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32110 01112345677777776665566788899988 45555554
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.79 E-value=4.1e-09 Score=112.05 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=63.2
Q ss_pred CCCccccccchHHHH-HHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhH
Q 005003 253 GVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 327 (720)
Q Consensus 253 ~~~f~dI~G~de~k~-eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~ 327 (720)
+.+|+++.+.+.... .+..+..++.... ...+++++|+||||||||+||+++|.++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999997653322 2333333443221 0124689999999999999999998855 5899999999887
Q ss_pred HHHhhhc-hHHHHHHHHHHHhcCCeEEEEccchhc
Q 005003 328 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 361 (720)
Q Consensus 328 ~~~~G~~-~~~vr~lF~~A~~~~P~ILfIDEID~l 361 (720)
..+.... .......+.... .+.+|+|||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7654321 111222233322 3469999999765
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.63 E-value=3.7e-08 Score=98.45 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=84.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh--------cC-CCEEEEechhhHHHHh----------hh-----chHHHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGE--------AG-VPFFSISGSEFVEMFV----------GV-----GASRVRDLFKKA 345 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e--------~g-~pf~~vs~s~~~~~~~----------G~-----~~~~vr~lF~~A 345 (720)
+--.|++|+||||||++|.+.+.. .| .++++.++.++..... .. ....+.+++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 346899999999999999886433 45 7888787776542211 11 11223322211
Q ss_pred HhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeec
Q 005003 346 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 425 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~ 425 (720)
....++||+|||++.+.+.+... .+ . ..++..+.. ....++-+|.+|+.++.|+.++++ |++..+++.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~----~e-~----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAG----SK-I----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTT----CC-C----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCcccc----ch-h----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 23457899999999997654321 11 1 124444442 234567778888889999999988 999999998
Q ss_pred CCCHHHH
Q 005003 426 VPDIRGR 432 (720)
Q Consensus 426 ~Pd~~eR 432 (720)
.|....+
T Consensus 152 ~~~~~~~ 158 (199)
T 2r2a_A 152 SNKMGMR 158 (199)
T ss_dssp ECSSCCE
T ss_pred CcccCcc
Confidence 8765444
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.62 E-value=5.1e-07 Score=118.59 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=111.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 370 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 370 (720)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+... ++++++|||+.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc---------
Confidence 58999999999999999999999999999999986443 34556677776544 479999999997
Q ss_pred CCChHHHHHHHHHHhhhc-------------C--ccCCCcEEEEEEeCC----CCccchhhcCCCcccceeeecCCCHHH
Q 005003 371 GGNDEREQTLNQLLTEMD-------------G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRG 431 (720)
Q Consensus 371 ~~~~e~~~~ln~LL~~ld-------------g--~~~~~~ViVIaaTN~----p~~LD~ALlrpgRFdr~I~i~~Pd~~e 431 (720)
..+....+++.+..+. | +.-+.++.|++|.|. ...|++++.+ || +.+.+..||.+.
T Consensus 710 --~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 710 --DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 3344445544433221 1 122345778888884 4478999998 88 689999999998
Q ss_pred HHHHHHHhhcCCCCcccc-----cH-HHHHHhC-----CCCcHHHHHHHHHHHHHHHH
Q 005003 432 RTEILKVHGSNKKFDADV-----SL-DVIAMRT-----PGFSGADLANLLNEAAILAG 478 (720)
Q Consensus 432 R~~IL~~~l~~~~l~~dv-----dl-~~LA~~t-----~G~SgadL~~lv~eAa~~A~ 478 (720)
..+|+-... ........ .+ ..+.... ..|.-+.+..+++.|....+
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr 841 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLIS 841 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhc
Confidence 888753321 11111110 11 1111111 23678889998888765543
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.52 E-value=2.3e-07 Score=118.47 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=82.5
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH----HHHhh------------hchHHHHHHHHHHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVG------------VGASRVRDLFKKAK 346 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~----~~~~G------------~~~~~vr~lF~~A~ 346 (720)
|++.+++++|+||||||||+||.+++.++ |..+.+++..+.. ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46778899999999999999999997765 5667777765432 11122 22345666777788
Q ss_pred hcCCeEEEEccchhccccc---CCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 347 ENAPCIVFVDEIDAVGRQR---GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r---~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
..+|++|||||++.+.+.+ +...........+.+.++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8999999999999887643 2111111112456788999999888877787777653
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.52 E-value=4.4e-08 Score=107.11 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=77.8
Q ss_pred ccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhccc-
Q 005003 285 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR- 363 (720)
Q Consensus 285 ~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~- 363 (720)
++.+.++.++|+||||+|||++++++++..+..++.+...+-...+ .+..+ ...+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~------~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------ELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------HHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH------HHHHh------cchhHHHHHHHHHHHHH
Confidence 3667777899999999999999999999887766654332210000 01111 2346789999999864
Q ss_pred ccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecC
Q 005003 364 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 426 (720)
Q Consensus 364 ~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~ 426 (720)
.+... .+. .. .....+...+|| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 111 11 122344445554 35678889999999 79999999998776644
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.31 E-value=4.4e-06 Score=110.73 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=89.7
Q ss_pred ceEEEEccCCChHHHHHHHHHH-hcCCCEEEEechhhHHHHhhhchHHHHHHHHHH----H------------hcCCeEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----K------------ENAPCIV 353 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~-e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A----~------------~~~P~IL 353 (720)
+++||+||||||||.+++.... ..+.+++.++++.-.+ +..+...++.- + ....+|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 4799999999999977765544 4466778888875432 23333444321 0 1223699
Q ss_pred EEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc-------CCCcEEEEEEeCCC-----CccchhhcCCCcccce
Q 005003 354 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-------GNTGIIVIAATNRA-----DILDSALLRPGRFDRQ 421 (720)
Q Consensus 354 fIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~-------~~~~ViVIaaTN~p-----~~LD~ALlrpgRFdr~ 421 (720)
||||++.-.... -+.......+.+++..-.-+. .-.++.+|||.|.| ..++++++| ||. .
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 999998642211 123345556666665321111 12368899999987 369999999 896 6
Q ss_pred eeecCCCHHHHHHHHHHhh
Q 005003 422 VTVDVPDIRGRTEILKVHG 440 (720)
Q Consensus 422 I~i~~Pd~~eR~~IL~~~l 440 (720)
+.++.|+.+....|+..++
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999976543
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.18 E-value=1.7e-05 Score=84.70 Aligned_cols=177 Identities=16% Similarity=0.167 Sum_probs=112.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CC-CEEEEechhhHHHHhhhchHHHHHHHHHHHh----cCCeEEEEccchh
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDA 360 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~-pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~----~~P~ILfIDEID~ 360 (720)
.+..+|||||+|+||+..++++++.+ +. ++..+... + ...++++++.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34579999999999999999998865 32 32222111 1 1234555555532 3457999999988
Q ss_pred -cccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC------CccchhhcCCCcccceeeecCCCHHHHH
Q 005003 361 -VGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA------DILDSALLRPGRFDRQVTVDVPDIRGRT 433 (720)
Q Consensus 361 -l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p------~~LD~ALlrpgRFdr~I~i~~Pd~~eR~ 433 (720)
+.. ...+.|+..++.. ++++++|.+|+.+ ..+-+++.+ |. ..+.+..|+.++..
T Consensus 88 kl~~--------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPNA--------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CCCT--------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCCh--------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 621 1345566666643 3345555444442 356778887 54 47889999999999
Q ss_pred HHHHHhhcCCCCccc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 005003 434 EILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 497 (720)
Q Consensus 434 ~IL~~~l~~~~l~~d-vdl~~LA~~t~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~~v 497 (720)
..++..+....+.-+ ..+..++..+.| +.+++.+.++.....+ +...||.+++.+.+...
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 888887766554322 225666766654 5666666666655543 44589999998887653
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.14 E-value=4.8e-06 Score=92.92 Aligned_cols=128 Identities=18% Similarity=0.275 Sum_probs=97.3
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEE---------eC---CCCccchhhcCCCc
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA---------TN---RADILDSALLRPGR 417 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa---------TN---~p~~LD~ALlrpgR 417 (720)
|.|+||||+|.+. ....+.|+..|+.... +++++++ |+ .++.+++.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999982 3467888888875433 3544455 32 16789999999 9
Q ss_pred ccceeeecCCCHHHHHHHHHHhhcCCCCc-ccccHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 005003 418 FDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT-PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 495 (720)
Q Consensus 418 Fdr~I~i~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~LA~~t-~G~SgadL~~lv~eAa~~A~r~~~~~It~~dl~~Al~ 495 (720)
|.. +.+++|+.++..++++..+...... .+..+..++..+ .| +++...++++.|...|..+++..|+.+|+.+++.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 975 6999999999999998876432222 122256677666 44 8899999999999999999999999999999986
Q ss_pred HH
Q 005003 496 RI 497 (720)
Q Consensus 496 ~v 497 (720)
-+
T Consensus 436 ~~ 437 (456)
T 2c9o_A 436 LF 437 (456)
T ss_dssp HS
T ss_pred Hh
Confidence 54
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.06 E-value=1.9e-06 Score=86.38 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 319 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~ 319 (720)
+++|+|||||||||++|.++|+.++..++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865443
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.99 E-value=3e-05 Score=75.66 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 319 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~ 319 (720)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765544
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.94 E-value=3.6e-05 Score=102.25 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhhhchHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 370 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 370 (720)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|..+... .+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999874432 3455566666443 468899999998
Q ss_pred CCChHHHHHHHHHHhhh-------------c-C--ccCCCcEEEEEEeCC----CCccchhhcCCCcccceeeecCCCHH
Q 005003 371 GGNDEREQTLNQLLTEM-------------D-G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIR 430 (720)
Q Consensus 371 ~~~~e~~~~ln~LL~~l-------------d-g--~~~~~~ViVIaaTN~----p~~LD~ALlrpgRFdr~I~i~~Pd~~ 430 (720)
..+...++.+.+..+ + | +.-+.++.|++|.|. ...|+++|.. || |.|.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 333334443333211 1 1 222446788888884 3578999999 88 68999999998
Q ss_pred HHHHHHH
Q 005003 431 GRTEILK 437 (720)
Q Consensus 431 eR~~IL~ 437 (720)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777753
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.89 E-value=2.1e-05 Score=77.58 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=32.0
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
++...-++|+||||+|||++++.+|...+.++++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 444456899999999999999999986677888887654
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.83 E-value=4.6e-05 Score=75.33 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=29.0
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
.+...-++|+||||+|||+|++.++... +.++++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3444568999999999999999998653 5677776643
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.80 E-value=2.9e-05 Score=80.86 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=23.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGV 316 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~ 316 (720)
++++||||||||||++|+++|+....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 47999999999999999999997643
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=4.6e-05 Score=76.28 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=61.7
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHh--c-------CCCEEEEechhh------HHH--Hhhh---------------c
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGE--A-------GVPFFSISGSEF------VEM--FVGV---------------G 334 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e--~-------g~pf~~vs~s~~------~~~--~~G~---------------~ 334 (720)
++...-++|+||||+|||++++.+|.. . +...++++..+- ... ..+. .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 444456899999999999999999985 2 456788876541 110 0110 0
Q ss_pred hH----HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 335 AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 335 ~~----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
.. .+..+.+.+....|.+|+|||+..+....-.+. +...+.++.+.+++..+..+....++.||.++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~ 173 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQV 173 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 11 122233444456799999999998753221100 0002222224444444433322335566666654
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.76 E-value=0.00031 Score=80.09 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=95.1
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-----C--CCEEEEechhh
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----G--VPFFSISGSEF 326 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-----g--~pf~~vs~s~~ 326 (720)
.....++|.+...+++.+.+.... ..++-++|+||+|+|||+||+.+++.. . ..++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 455779999999888877664211 124469999999999999999997532 1 23454443321
Q ss_pred -----HHHH------hh----------hchHHHHHHHHHH-Hh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHH
Q 005003 327 -----VEMF------VG----------VGASRVRDLFKKA-KE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 383 (720)
Q Consensus 327 -----~~~~------~G----------~~~~~vr~lF~~A-~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~L 383 (720)
...+ .+ .....+...+... .. ..|++|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----H
Confidence 1111 11 0111222222222 22 36899999999653 0 1
Q ss_pred HhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeee---cCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCC
Q 005003 384 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV---DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 460 (720)
Q Consensus 384 L~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i---~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G 460 (720)
+.. + ..+..||.||..+..... .. + ..+.+ ...+.++-.+++..++.............+++.+.|
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~--~~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS--VM-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT--CC-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh--cC-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 222 2 234567777765432211 11 1 23344 356888888899887754222223346788888988
Q ss_pred Cc
Q 005003 461 FS 462 (720)
Q Consensus 461 ~S 462 (720)
..
T Consensus 320 ~P 321 (591)
T 1z6t_A 320 SP 321 (591)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=7.1e-05 Score=81.42 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=67.4
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH----hhh-----------chHHHHHHHHHH-H
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV-----------GASRVRDLFKKA-K 346 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~----~G~-----------~~~~vr~lF~~A-~ 346 (720)
|.+...-++|+||||+|||+||..+|.++ +.++++++...-.+.. .|. ....+.+..+.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34445579999999999999999997754 6788888865422111 111 112222333322 3
Q ss_pred hcCCeEEEEccchhcccccCCCCCCCC---hHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 347 ENAPCIVFVDEIDAVGRQRGTGIGGGN---DEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~~r~~~~~~~~---~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
...+++|+||.+..+..........++ ....+.+.+++..|..+....++.||.+.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 467899999999999642211000011 02234456666666554445566666653
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=0.00014 Score=72.99 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=70.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHH--Hh--cCCCEEEEechhhHHHH------hhh-----------------------
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIA--GE--AGVPFFSISGSEFVEMF------VGV----------------------- 333 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA--~e--~g~pf~~vs~s~~~~~~------~G~----------------------- 333 (720)
++...-+.|.||+|+|||+|++.++ .. .+...++++........ .+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 3344469999999999999999998 32 35555555543211100 000
Q ss_pred -------------chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEE
Q 005003 334 -------------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 400 (720)
Q Consensus 334 -------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIa 400 (720)
.......+........|.+|+|||..+...... ......+.+..++..+. ..++.||.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~ 177 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEE
Confidence 011122233334457899999999988753211 12334445666766653 23456777
Q ss_pred EeCCCCccc-----hhhcCCCcc-cceeeecC
Q 005003 401 ATNRADILD-----SALLRPGRF-DRQVTVDV 426 (720)
Q Consensus 401 aTN~p~~LD-----~ALlrpgRF-dr~I~i~~ 426 (720)
+|+..+... +.+.. .+ |+++.+..
T Consensus 178 vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 178 TTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred EECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 777655431 12222 34 67666653
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.73 E-value=3.5e-05 Score=83.25 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=49.8
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH----Hhhh-----------chHHHHHHHH-HHH
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV-----------GASRVRDLFK-KAK 346 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~----~~G~-----------~~~~vr~lF~-~A~ 346 (720)
|.+...-++|+||||+|||+||..++..+ +.++++++...-.+. ..|. .......+.. .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34444569999999999999999998654 667888876532211 1121 1111222222 233
Q ss_pred hcCCeEEEEccchhccc
Q 005003 347 ENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~ 363 (720)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999863
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=5.1e-05 Score=80.82 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=68.0
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhh--HHH---H---hhhc--------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEM---F---VGVG-------------- 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~--~~~---~---~G~~-------------- 334 (720)
|.+...-++|+||||+|||+++..+|..+ +.++++++...- .+. + .|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 34445569999999999999999998865 567888876542 110 0 1110
Q ss_pred -hH----HHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEe
Q 005003 335 -AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 402 (720)
Q Consensus 335 -~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaT 402 (720)
.. .+..+....+. ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 12233334445 6789999999999864321110 11123344566666666555444455566553
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.71 E-value=7.5e-05 Score=80.89 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=67.1
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH----Hhhhc--------hHHHHHHHHH----HHh
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVG--------ASRVRDLFKK----AKE 347 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~----~~G~~--------~~~vr~lF~~----A~~ 347 (720)
++...-++|+||||+|||+|+..+|..+ +.++++++..+.... -.|.. ...+.+++.. .+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3444568999999999999999998764 677888876542210 01110 0112222222 234
Q ss_pred cCCeEEEEccchhccc-ccCCCCCCCC--hHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 348 NAPCIVFVDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~-~r~~~~~~~~--~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
..|.+++||.+..+.+ ..-.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 6789999999998864 1111111111 1234556677766666555556666654
No 122
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.69 E-value=9.9e-05 Score=82.28 Aligned_cols=67 Identities=28% Similarity=0.383 Sum_probs=41.4
Q ss_pred ccccccCCCCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CC-CEEE
Q 005003 245 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFS 320 (720)
Q Consensus 245 ~~~~~~~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~-pf~~ 320 (720)
.-+.++..+.+|+++ .+++++.+..++.++...+ ..++|.|+||||||+++.+++..+ +. .++.
T Consensus 12 ~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 12 SGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp ---------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 346677888999987 4456666666666655432 279999999999999999998765 33 4555
Q ss_pred Eec
Q 005003 321 ISG 323 (720)
Q Consensus 321 vs~ 323 (720)
+..
T Consensus 80 ~a~ 82 (459)
T 3upu_A 80 AAP 82 (459)
T ss_dssp EES
T ss_pred ecC
Confidence 543
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.61 E-value=8.7e-05 Score=95.20 Aligned_cols=118 Identities=19% Similarity=0.280 Sum_probs=78.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH----hhh--------chHHHHHHHHHHHh---
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV--------GASRVRDLFKKAKE--- 347 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~----~G~--------~~~~vr~lF~~A~~--- 347 (720)
|+.+...++|+|+||+|||+||..+|..+ +.++++++..+-.+.. .|. .+..+.++++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46667789999999999999999998866 4579999987654433 221 11224445555443
Q ss_pred -cCCeEEEEccchhccc-ccCCCC-CCCC-hHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 348 -NAPCIVFVDEIDAVGR-QRGTGI-GGGN-DEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 348 -~~P~ILfIDEID~l~~-~r~~~~-~~~~-~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
..|++|+||.++.+.. ....+. +... .-..+.+++++..|..+....++.||++..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999965 221111 1111 122445788888888777777777777654
No 124
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.60 E-value=0.00088 Score=82.20 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=101.2
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc-------CCCEEEEechh
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 325 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs~s~ 325 (720)
+....+++|.++..++|.+.+.... ..++-|.|+|+.|+|||+||+.+++.. ...++.++.+.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 3456679999999988887764221 124568999999999999999997752 12244454332
Q ss_pred h-----HHHH------hh----------hchHHHHHHHHHHHh--cCCeEEEEccchhcccccCCCCCCCChHHHHHHHH
Q 005003 326 F-----VEMF------VG----------VGASRVRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ 382 (720)
Q Consensus 326 ~-----~~~~------~G----------~~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~ 382 (720)
. ...+ .+ .....+.+.+..... ..+.+|+||+++...
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------- 249 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------- 249 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------
Confidence 1 1100 00 111223333333323 337899999987541
Q ss_pred HHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecC-CCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCC
Q 005003 383 LLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV-PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 461 (720)
Q Consensus 383 LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~-Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~ 461 (720)
.++.+ ..+..||.||..+..... .. .....+.++. .+.++-.++|..+..............+++.+.|.
T Consensus 250 ---~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ---VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ---HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ---HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 11222 234577778876543321 11 1234667775 78888888888776543333233467899999887
Q ss_pred cH
Q 005003 462 SG 463 (720)
Q Consensus 462 Sg 463 (720)
.-
T Consensus 321 PL 322 (1249)
T 3sfz_A 321 PL 322 (1249)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=0.00014 Score=78.89 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=51.6
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH----HHhhh-----------chHHHHHHHHHH-H
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV-----------GASRVRDLFKKA-K 346 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~----~~~G~-----------~~~~vr~lF~~A-~ 346 (720)
|.+..+-++|+||||+|||+||..+|.++ +.++++++...-.+ .-.|. ....+.++++.. +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34445579999999999999999998754 67888888743211 11111 112233333332 3
Q ss_pred hcCCeEEEEccchhccc
Q 005003 347 ENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~ 363 (720)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999864
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.58 E-value=5.7e-05 Score=72.16 Aligned_cols=40 Identities=15% Similarity=0.367 Sum_probs=34.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
|+-|+|+|+||+||||++++++..++.+++.++...+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4579999999999999999999999999998887766543
No 127
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.54 E-value=0.00014 Score=78.14 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=66.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhh--HH----HH--hhhc---------------
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VE----MF--VGVG--------------- 334 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~--~~----~~--~G~~--------------- 334 (720)
++...-++|+||||+|||++|..+|..+ +.++++++...- .+ .. .|..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3444458999999999999999998863 557888876542 11 00 1110
Q ss_pred hHH----HHHHHHHHHh--cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeC
Q 005003 335 ASR----VRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 403 (720)
Q Consensus 335 ~~~----vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN 403 (720)
... +..+....+. ..+.+|+||.+..+....-.+. +....+++.+.+++..+..+....++.||.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 111 1122333445 6789999999999864321100 111223344566666655544444566666543
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.54 E-value=0.00013 Score=72.18 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=28.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhcC---------CCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~g---------~pf~~vs~s 324 (720)
|++...-+.|.||+|+|||+|++.+++..- ...++++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 334444689999999999999999998542 236666654
No 129
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.54 E-value=0.0017 Score=66.02 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=85.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEech--------hhHHHHhh----------h--chHHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS--------EFVEMFVG----------V--GASRVRDLFKKAKEN 348 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s--------~~~~~~~G----------~--~~~~vr~lF~~A~~~ 348 (720)
.+++.|+||+|||+++-.+|..+ |..++.++.. .+...... . .+..+..++ ..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----KA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----hc
Confidence 59999999999999999998764 7777655552 12111100 0 112233322 24
Q ss_pred CCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC--C----------------Cccch
Q 005003 349 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR--A----------------DILDS 410 (720)
Q Consensus 349 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~--p----------------~~LD~ 410 (720)
.|.+++|||+-..-.. ...+...-+-+..++. .++=|++|+|. . +.++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 6899999998654111 1112223333333322 34557788872 2 34455
Q ss_pred hhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCcccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005003 411 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 479 (720)
Q Consensus 411 ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~LA~~t~G~SgadL~~lv~eAa~~A~r 479 (720)
.+++ +-|.+.-++.|..+-+.+ ....+...++-.-..+.. -|+...|..+-.-|...++.
T Consensus 151 ~~~~--~a~~v~lvD~~p~~l~~r----l~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~a~ 210 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRELLER----LRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTAAA 210 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHHHHHH----HHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHHHT
T ss_pred HHHh--hCCeEEEecCCHHHHHHH----HHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHHHH
Confidence 5555 566677777777553333 323332222221222222 26777776665556665543
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.46 E-value=0.00018 Score=79.11 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=65.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhhH-H-------HHhhhc--------------
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV-E-------MFVGVG-------------- 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~~-~-------~~~G~~-------------- 334 (720)
|+....-++|+||||+|||+|++.+|-.. +...++++..+-. . .-.|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 44445569999999999999999776433 2347777765421 0 001110
Q ss_pred -----hHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 335 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 335 -----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
...+..+........|.+|+||++-.+......+ .+...++++.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333345679999999998886432211 11223445555666666655544445666666654
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00057 Score=68.25 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=29.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s 324 (720)
|.+...-++|+||||+|||+++..+|.. .+.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3444456899999999999999888664 36678877654
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.37 E-value=9.1e-05 Score=72.60 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=38.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHHH--------hhh-----chHHHHHHHHHHHhcCCeEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF--------VGV-----GASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~~--------~G~-----~~~~vr~lF~~A~~~~P~ILfI 355 (720)
-++++||||+|||+++..++.. .+.+++.+.... -..+ .|. ......++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 4789999999999999666654 356555543220 0000 010 0011223333332 24579999
Q ss_pred ccchhc
Q 005003 356 DEIDAV 361 (720)
Q Consensus 356 DEID~l 361 (720)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 133
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.36 E-value=0.00034 Score=75.42 Aligned_cols=119 Identities=23% Similarity=0.244 Sum_probs=64.7
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------CCCEEEEechhhH--H----HH---------------hhh--
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--E----MF---------------VGV-- 333 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------g~pf~~vs~s~~~--~----~~---------------~G~-- 333 (720)
|++...-+.|+||||+|||+|++.++... +-.+++++..+.. . .. ...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 44444568999999999999999999876 2355777764321 0 00 000
Q ss_pred chHHHHHHHHH----HHh-----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 334 GASRVRDLFKK----AKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 334 ~~~~vr~lF~~----A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
.......++.. ... ..|.+|+|||+-++......+. +....+++.+.+++..+..+....++.||.+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 01111222222 233 5799999999988764321110 0111222345555555544433345566666554
Q ss_pred C
Q 005003 405 A 405 (720)
Q Consensus 405 p 405 (720)
.
T Consensus 286 ~ 286 (349)
T 1pzn_A 286 Q 286 (349)
T ss_dssp C
T ss_pred c
Confidence 3
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00023 Score=75.29 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=66.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---------------C----CCEEEEechhh--HHH---H---hhhc----
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------------G----VPFFSISGSEF--VEM---F---VGVG---- 334 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---------------g----~pf~~vs~s~~--~~~---~---~G~~---- 334 (720)
|.+...-++|+||||+|||++|..+|..+ | .++++++...- .+. + .|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34444568999999999999999998753 2 57788876542 110 0 1110
Q ss_pred -----------hH----HHHHHHHHHHh-cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEE
Q 005003 335 -----------AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 398 (720)
Q Consensus 335 -----------~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViV 398 (720)
.. .+..+....+. ..+.+|+||.+..+......+. +....+++.+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 01 11223333444 5689999999999864321110 1112334456666666655544455666
Q ss_pred EEE
Q 005003 399 IAA 401 (720)
Q Consensus 399 Iaa 401 (720)
|.+
T Consensus 253 i~~ 255 (322)
T 2i1q_A 253 LVT 255 (322)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 135
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.34 E-value=0.00015 Score=92.03 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=54.8
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHH----Hhhh--------chHHHHHHHHHHH----
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV--------GASRVRDLFKKAK---- 346 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~----~~G~--------~~~~vr~lF~~A~---- 346 (720)
|+.+...++|+||||+|||+||..+|.++ +.++++++..+-.+. ..|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46667789999999999999999998765 568888887644321 1221 1112344444443
Q ss_pred hcCCeEEEEccchhccc
Q 005003 347 ENAPCIVFVDEIDAVGR 363 (720)
Q Consensus 347 ~~~P~ILfIDEID~l~~ 363 (720)
...|++|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999863
No 136
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.29 E-value=0.003 Score=71.84 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=93.3
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHH----hcCCC---EEEEechh-----hH
Q 005003 260 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG----EAGVP---FFSISGSE-----FV 327 (720)
Q Consensus 260 ~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~----e~g~p---f~~vs~s~-----~~ 327 (720)
+|.++.++++.+.+..-.. ..++-|.|+|++|+|||+||+.+++ ..... .+.++.+. ..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---------~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---------LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---------SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcccC---------CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 4999999988887743211 1245789999999999999999996 22221 12333322 11
Q ss_pred ---HHH---hhhc-------------hHHHHHHHHHHHhcC-CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhh
Q 005003 328 ---EMF---VGVG-------------ASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 387 (720)
Q Consensus 328 ---~~~---~G~~-------------~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~l 387 (720)
... .+.. ...+...+...-... +++|+||+++... +. .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~~~-~ 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--RWAQ-E 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HHHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--cccc-c
Confidence 111 1110 111233344333443 8999999997741 11 1111 1
Q ss_pred cCccCCCcEEEEEEeCCCCccchhhcCCCcccceeeecCCCHHHHHHHHHHhhcCCCCccc--ccHHHHHHhCCCCc
Q 005003 388 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD--VSLDVIAMRTPGFS 462 (720)
Q Consensus 388 dg~~~~~~ViVIaaTN~p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~~~l~~~~l~~d--vdl~~LA~~t~G~S 462 (720)
.+..||.||....... . .. -.+..+.++..+.++-.++|..+........+ .....+++.+.|..
T Consensus 264 ------~gs~ilvTTR~~~v~~-~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ------LRLRCLVTTRDVEISN-A-AS--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ------TTCEEEEEESBGGGGG-G-CC--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ------CCCEEEEEcCCHHHHH-H-cC--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 3456777776533221 1 11 13356888888999999999988544321111 12456677777654
No 137
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.27 E-value=0.00056 Score=71.66 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 263 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 263 de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
++..+.+.+++..+... ......|.-++|.||||+||||+++.++.+.+..++.+|+..+.
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 34444555555443222 12334567899999999999999999999886567778876553
No 138
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.27 E-value=0.0025 Score=70.84 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCcEEEEEEe----CC
Q 005003 337 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAAT----NR 404 (720)
Q Consensus 337 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~--------~~~~ViVIaaT----N~ 404 (720)
..++..+.|..+ +|+|+||||.++.+.+. .+++...+.+...||..+|+.. ...+|++|||. +.
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 344555555333 48999999999765331 2333344557778888888742 34679999997 23
Q ss_pred CCccchhhcCCCcccceeeecCCCHHHHHHHHH
Q 005003 405 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 437 (720)
Q Consensus 405 p~~LD~ALlrpgRFdr~I~i~~Pd~~eR~~IL~ 437 (720)
|..+-|.|+. ||..+|.++.++.++..+|+.
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 3445578888 999999999999999999994
No 139
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00045 Score=73.66 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=62.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhc-----CCCEEEEechhhHH----HHhhh-----------chHHH-HHHHHHH---Hh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE----MFVGV-----------GASRV-RDLFKKA---KE 347 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~s~~~~----~~~G~-----------~~~~v-r~lF~~A---~~ 347 (720)
-++|+||||+|||+|+-.++.++ +..+++++..+-.. .-.|. ....+ -++.+.+ +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 47899999999999988776543 66788888754221 11111 11122 2222222 45
Q ss_pred cCCeEEEEccchhcccccC-CCC-CC---CChHHHHHHHHHHhhhcCccCCCcEEEEEE
Q 005003 348 NAPCIVFVDEIDAVGRQRG-TGI-GG---GNDEREQTLNQLLTEMDGFEGNTGIIVIAA 401 (720)
Q Consensus 348 ~~P~ILfIDEID~l~~~r~-~~~-~~---~~~e~~~~ln~LL~~ldg~~~~~~ViVIaa 401 (720)
..|.+|+||-|.++.++.. .+. +. ++....+.+++.|..|.++....++.||.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6799999999999974321 111 10 011244566676666555544556666654
No 140
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.25 E-value=0.00057 Score=70.69 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc--C-----------CCEEEEechh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA--G-----------VPFFSISGSE 325 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~--g-----------~pf~~vs~s~ 325 (720)
..-++|+||||+|||+|++.++..+ | .++.+++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3468999999999999999998643 2 4676776543
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00065 Score=68.83 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=44.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh-------hHHHHhhhc-----hHHHHHHHHHHHh----cCCeE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE-------FVEMFVGVG-----ASRVRDLFKKAKE----NAPCI 352 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~-------~~~~~~G~~-----~~~vr~lF~~A~~----~~P~I 352 (720)
-++++||||+|||+++..++..+ +..++.++... +.+. .|.. .....++++.++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 47788999999999998887655 66777664322 1111 1110 1112356666654 34789
Q ss_pred EEEccchhc
Q 005003 353 VFVDEIDAV 361 (720)
Q Consensus 353 LfIDEID~l 361 (720)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999886
No 142
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.22 E-value=0.00017 Score=69.45 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=31.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 330 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~ 330 (720)
++.|+|+||||+|||++++.+|..++.+++.. .++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~ 43 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKR 43 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHH
Confidence 45799999999999999999999999988753 4444433
No 143
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.0015 Score=65.17 Aligned_cols=39 Identities=33% Similarity=0.330 Sum_probs=29.4
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh----cCCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e----~g~pf~~vs~s 324 (720)
|.+...-++++|+||+|||++|..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3444456999999999999999887543 36788888754
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.15 E-value=0.0011 Score=67.77 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=34.8
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
...|..++|.|+||+|||++|+.++..++.+++.+++..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 34567899999999999999999999998777778877663
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.11 E-value=0.00034 Score=67.43 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=29.1
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
..|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 446679999999999999999999999988765
No 146
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00026 Score=69.44 Aligned_cols=39 Identities=36% Similarity=0.484 Sum_probs=31.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
..+.++|.||||+|||++++++|+.++.+++. ..++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHH
Confidence 34579999999999999999999999998864 4444443
No 147
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.03 E-value=0.0013 Score=73.21 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.6
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
|.....-++|.|+||+|||+++..+|... |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 44455569999999999999999997743 6688888753
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.00 E-value=0.0005 Score=66.30 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.4
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
..+.-+.|.||||+||||+++.+++..+.+.+.++..++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3445689999999999999999999888888888876653
No 149
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.001 Score=63.10 Aligned_cols=37 Identities=27% Similarity=0.667 Sum_probs=29.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+..+.|.||||+||||+++.+|+.++.+++ ++..+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 346999999999999999999999987554 5544443
No 150
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.0005 Score=64.78 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998886544
No 151
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.93 E-value=0.00042 Score=66.66 Aligned_cols=35 Identities=31% Similarity=0.584 Sum_probs=29.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
-|+|.|+||+|||++|+.+|..+|++++. ..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 49999999999999999999999998764 445443
No 152
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0015 Score=66.99 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=32.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~ 328 (720)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 346999999999999999999997 788888777766654
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.89 E-value=0.00051 Score=65.91 Aligned_cols=32 Identities=38% Similarity=0.771 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
++.|+|+|+||+|||++++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998877643
No 154
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.88 E-value=0.0021 Score=71.28 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=30.6
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
|..+..-++|.|+||+|||++|..+|... +.|+++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44455568999999999999999987643 6788888763
No 155
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.87 E-value=0.001 Score=63.08 Aligned_cols=36 Identities=31% Similarity=0.670 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHH-hcCCCEEEEechhhH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEFV 327 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~-e~g~pf~~vs~s~~~ 327 (720)
|+-|+|.|+||+||||+|+.++. ..+ +..++...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHH
Confidence 55799999999999999999998 444 4455544443
No 156
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.86 E-value=0.0016 Score=67.84 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=28.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEec
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 323 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~ 323 (720)
|+....-++|.||||+|||+|++.+|... |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444468999999999999999998754 556766654
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.00061 Score=65.11 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=29.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.++|.||||+|||++++.+|..++.+++. ..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHHH
Confidence 58999999999999999999999987764 444443
No 158
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00053 Score=66.43 Aligned_cols=31 Identities=42% Similarity=0.696 Sum_probs=26.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHh-cCCCEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGE-AGVPFFS 320 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e-~g~pf~~ 320 (720)
+..|+|+|+||+|||++++.+|.. .|++++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 346999999999999999999999 6866654
No 159
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.83 E-value=0.0007 Score=66.21 Aligned_cols=34 Identities=41% Similarity=0.625 Sum_probs=28.9
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
..|.-|+|.|+||+|||++|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3455699999999999999999999999886543
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.0013 Score=75.65 Aligned_cols=96 Identities=25% Similarity=0.355 Sum_probs=55.7
Q ss_pred eEEEEccCCChHHHHHHHHHHh---cCCCEEEEechhhHHH----HhhhchHHHHHHHHHH---------HhcCCeEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM----FVGVGASRVRDLFKKA---------KENAPCIVFV 355 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~~~~~----~~G~~~~~vr~lF~~A---------~~~~P~ILfI 355 (720)
.+++.||||||||+++++++.. .+.+++.+..+.-... ..+.....+..++... ......+|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 6899999999999999999774 3677776644322111 1122222222222110 0113479999
Q ss_pred ccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 356 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 356 DEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 286 DEasml~--------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 286 DEVSMMG--------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp CCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred cCccCCC--------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 9998872 235555665443 3455777775554
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.81 E-value=0.00063 Score=64.49 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.|+|.|+||+|||++++.+|..+|.|++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 699999999999999999999999998753
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.80 E-value=0.00082 Score=64.38 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=30.9
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..|+-|+|.|+||+|||++++.++..++.+++ +.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 34567999999999999999999999986655 4444443
No 163
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.79 E-value=0.0059 Score=61.82 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=30.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEech-hhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s-~~~~ 328 (720)
.++++||+|+|||.++.+++...+.+++.+... ++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 489999999999999999999888777776544 4443
No 164
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.78 E-value=0.0005 Score=66.03 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.9
Q ss_pred CceEEEEccCCChHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAI 310 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAl 310 (720)
+.-+.|.||+|+||||+++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 345889999999999999953
No 165
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.74 E-value=0.00088 Score=64.31 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=30.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|.-|+|.|+||+||||+|+.++..++.++ ++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHHH
Confidence 45799999999999999999999998765 45555543
No 166
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.70 E-value=0.005 Score=65.13 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.2
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
|..+..-++|.|+||+|||+++..+|... +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44444569999999999999999998654 5678888753
No 167
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.68 E-value=0.00099 Score=65.16 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
++-|+|.|+||+||||+++.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877664
No 168
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.67 E-value=0.00073 Score=63.29 Aligned_cols=29 Identities=34% Similarity=0.630 Sum_probs=25.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
-|+|+||||+||||+|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888886653
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.67 E-value=0.0015 Score=62.67 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=31.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
+.-+.|.|++|+||||+++.++..+ |.|++.+++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4568899999999999999999987 999998876543
No 170
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.67 E-value=0.0061 Score=68.96 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=51.1
Q ss_pred Ce-EEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC--ccchhhcCCCcccceeeecC
Q 005003 350 PC-IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDV 426 (720)
Q Consensus 350 P~-ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~--~LD~ALlrpgRFdr~I~i~~ 426 (720)
|. +|+|||...+.... ..+....+..+... ....++.+|.+|.+|. .++..++. -|..+|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998874311 11233333333332 2234788999999987 67877776 6777888999
Q ss_pred CCHHHHHHHHHH
Q 005003 427 PDIRGRTEILKV 438 (720)
Q Consensus 427 Pd~~eR~~IL~~ 438 (720)
.+..+.+.++..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 998888888743
No 171
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.66 E-value=0.00085 Score=64.72 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=30.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+.-|+|.|+||+||||+++.+|..++.+++ +.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~~ 45 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLLR 45 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 446999999999999999999999988755 4445443
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.66 E-value=0.00086 Score=64.07 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 319 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~ 319 (720)
|.-|+|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999887
No 173
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.66 E-value=0.0056 Score=70.01 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred eEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCC--ccchhhcCCCcccceeeecCCC
Q 005003 351 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPD 428 (720)
Q Consensus 351 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~--~LD~ALlrpgRFdr~I~i~~Pd 428 (720)
.+|+|||++.+.... ..+....+.++..+ ...-+|.+|.+|.+|. .++..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999885421 12344455555543 2356899999999987 78888776 677888899998
Q ss_pred HHHHHHHHH
Q 005003 429 IRGRTEILK 437 (720)
Q Consensus 429 ~~eR~~IL~ 437 (720)
..+-..++.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877774
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.66 E-value=0.0021 Score=69.60 Aligned_cols=96 Identities=25% Similarity=0.324 Sum_probs=56.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCEEEEec-hhhH---------HHHhhhchHHHHHHHHHHHhcCCeEEEEcc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG-SEFV---------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~-s~~~---------~~~~G~~~~~vr~lF~~A~~~~P~ILfIDE 357 (720)
-+++.||+|+||||+.+++++.. +..++.+.- .++. ...++.....+.+.+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48999999999999999998854 233332211 0110 000111112345577777788999999999
Q ss_pred chhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 358 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 358 ID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
+-. . .+...++... ..+..|+.++...+..
T Consensus 205 p~d-------------~---e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MRD-------------L---ETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCS-------------H---HHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred CCC-------------H---HHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 831 1 2233333332 2345688888876543
No 175
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.65 E-value=0.001 Score=68.27 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=28.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
-++|.||||+|||++|+++|++.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999998876654
No 176
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.63 E-value=0.0011 Score=70.67 Aligned_cols=36 Identities=33% Similarity=0.597 Sum_probs=30.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
.++.++|+||+|+|||++++.+|.+.+.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 355799999999999999999999999877776543
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.63 E-value=0.0012 Score=62.42 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=29.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+-|+|.|+||+|||++++.+|..++.+++. ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~ 38 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQ 38 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHH
Confidence 358999999999999999999999987654 444443
No 178
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.61 E-value=0.0074 Score=63.85 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=47.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------HH---hh---------hch-HHHHHHHH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VG---------VGA-SRVRDLFK 343 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~-------~~---~G---------~~~-~~vr~lF~ 343 (720)
...|+-+++.||+|+||||++..+|..+ +..+..+++..+.. .+ .+ ... ....+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456779999999999999999998854 55666666543221 11 01 011 11233455
Q ss_pred HHHhcCCeEEEEccch
Q 005003 344 KAKENAPCIVFVDEID 359 (720)
Q Consensus 344 ~A~~~~P~ILfIDEID 359 (720)
.+....|.+++||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5666788999999874
No 179
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.0013 Score=65.24 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=30.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+.-|+|.|+||+||||+++.+|..++.+++ +..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 40 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHL--ATGDMLR 40 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE--ehhHHHH
Confidence 456999999999999999999999997665 4445543
No 180
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.58 E-value=0.00096 Score=64.51 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|.-|+|.|+||+|||++++.++..++.+++ +.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 456999999999999999999999986554 5455543
No 181
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.58 E-value=0.0073 Score=59.91 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=66.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEech---------hhHHHHh-----------------hhchHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS---------EFVEMFV-----------------GVGASRVRDLF 342 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s---------~~~~~~~-----------------G~~~~~vr~lF 342 (720)
.|++|+++|.|||++|-++|-.+ |..+..+..- .+.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48999999999999999997654 7777777321 2333331 00123445566
Q ss_pred HHHHh----cCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccchhhcCCCcc
Q 005003 343 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 418 (720)
Q Consensus 343 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD~ALlrpgRF 418 (720)
+.+++ ....+|++||+-....-.- - .. ..++..+.. ...+.-||.|+|.+ ++.|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~------l-~~----~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY------L-PL----EEVISALNA--RPGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS------S-CH----HHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC------C-CH----HHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hC
Confidence 66654 3468999999966422110 1 11 123333332 23456788888864 455555 55
Q ss_pred cceeee
Q 005003 419 DRQVTV 424 (720)
Q Consensus 419 dr~I~i 424 (720)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 544444
No 182
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.58 E-value=0.00099 Score=66.58 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=30.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+.-|+|.|+||+||||+++.+|..++.+++ +.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 43 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHL--SSGDLLR 43 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEE--echHHHH
Confidence 457999999999999999999999987665 4445443
No 183
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.57 E-value=0.0011 Score=63.68 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=28.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.-|+|.|+||+||||+++.+|..++.+++ +.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 35899999999999999999999987654 444444
No 184
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.56 E-value=0.0011 Score=65.47 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=26.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998776644
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0012 Score=65.14 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=26.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
-|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877643
No 186
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0048 Score=60.66 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 187
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.51 E-value=0.0015 Score=64.88 Aligned_cols=36 Identities=28% Similarity=0.584 Sum_probs=29.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
..|+|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 41 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS--TGDMLR 41 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe--hhHHHH
Confidence 468999999999999999999999977654 445443
No 188
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0012 Score=67.06 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.|.-|+|.||||+||||+|+.++...+.+++ +.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 4567999999999999999999999887655 4455443
No 189
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.50 E-value=0.0013 Score=64.13 Aligned_cols=37 Identities=16% Similarity=0.393 Sum_probs=29.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
++-|+|.|+||+|||++++.++..++.+++ +.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i--~~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL--SAGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE--eHHHHHH
Confidence 456999999999999999999999987655 4445443
No 190
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.50 E-value=0.0013 Score=62.07 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=29.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
.|+|.|+||+|||++++.++..++.+++. ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHH
Confidence 48999999999999999999999988764 444443
No 191
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.50 E-value=0.019 Score=63.75 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=49.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------HH---hh----------hchHHHHHHHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VG----------VGASRVRDLFKKA 345 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~-------~~---~G----------~~~~~vr~lF~~A 345 (720)
.|.-+++.|++|+||||++..+|..+ |..+..+++..+.. .+ .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 66777777653311 00 01 1223346677788
Q ss_pred HhcCCeEEEEccchh
Q 005003 346 KENAPCIVFVDEIDA 360 (720)
Q Consensus 346 ~~~~P~ILfIDEID~ 360 (720)
+...+.+++||....
T Consensus 179 ~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HhCCCCEEEEECCCc
Confidence 777788999997643
No 192
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.49 E-value=0.0013 Score=62.95 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=23.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 193
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.43 E-value=0.0019 Score=64.89 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=29.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+..|+|.|+||+||||+|+.||..++.+++. ..+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 3469999999999999999999999976654 445543
No 194
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.43 E-value=0.0018 Score=65.26 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=31.8
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
+.|+-|+|.||||+||+|.|+.||...+++ .+|..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 446678999999999999999999999865 456666654
No 195
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.41 E-value=0.0019 Score=61.86 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~ 327 (720)
-|+|.|+||+||||+++.++..++ .++..++.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 489999999999999999999765 446666655543
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.40 E-value=0.0073 Score=60.67 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
.-+.|.||+|+|||||.+++++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3588999999999999999998754
No 197
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.38 E-value=0.0037 Score=61.16 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=27.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.-+.|.||+|+||||+++.+++ +|.+++ +..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 3588999999999999999998 787765 555544
No 198
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.0021 Score=62.87 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=28.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
+.-+.|.||+|+||||+++.+++..|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 45699999999999999999999987644 455443
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.37 E-value=0.0016 Score=64.82 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=29.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|.-|+|.||||+||||+++.+|..++.++ ++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~~ 41 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLLR 41 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHHH
Confidence 45699999999999999999999998754 45555443
No 200
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.37 E-value=0.0022 Score=60.99 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=27.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
.-++|.||||+|||++++.+++..|.+++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 46899999999999999999998886554 44443
No 201
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.25 E-value=0.0035 Score=61.30 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
+.-+.|.||+|+||||+++++|+.+ |...+++++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4568999999999999999999987 555456665544
No 202
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.25 E-value=0.0031 Score=60.43 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs 322 (720)
-|.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988764
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.21 E-value=0.034 Score=61.57 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=46.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH----------HHhhh----------chHHHHHHHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----------MFVGV----------GASRVRDLFKKA 345 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~----------~~~G~----------~~~~vr~lF~~A 345 (720)
.|+-+++.||+|+||||++..+|..+ |..+..+++..+.. ...+. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46779999999999999999998754 66777666543211 00111 111234455556
Q ss_pred HhcCCeEEEEccchh
Q 005003 346 KENAPCIVFVDEIDA 360 (720)
Q Consensus 346 ~~~~P~ILfIDEID~ 360 (720)
+...+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556788999998744
No 204
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.21 E-value=0.0019 Score=66.70 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=41.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC----CCEEEEechhh----------H-HHHhhhchHHHHHHHHHHHhcCCeEEEEc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEF----------V-EMFVGVGASRVRDLFKKAKENAPCIVFVD 356 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g----~pf~~vs~s~~----------~-~~~~G~~~~~vr~lF~~A~~~~P~ILfID 356 (720)
-++|.||+|+||||+++++++... ..++. ..... + ...+|.....++..+..+-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-cCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 589999999999999999988541 22222 11110 0 00011111234666677766789999999
Q ss_pred cch
Q 005003 357 EID 359 (720)
Q Consensus 357 EID 359 (720)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 205
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.17 E-value=0.003 Score=62.45 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=26.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999998876543
No 206
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.17 E-value=0.00098 Score=72.05 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 261 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 261 G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
..+...+.+.+.+...-.+.. ...++|.||||+|||++++++|+.++.+|+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~--------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNY--------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCS--------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCC--------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 445556655555544322211 1269999999999999999999999888755
No 207
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.15 E-value=0.022 Score=64.45 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=62.6
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechh----hHHHH--hh----------------------hch
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE----FVEMF--VG----------------------VGA 335 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~----~~~~~--~G----------------------~~~ 335 (720)
+....-++|.||||+|||+|++.+++.. |.++++++..+ +.... .| .+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3334458999999999999999998754 45666665432 11100 00 122
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCC
Q 005003 336 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 405 (720)
Q Consensus 336 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p 405 (720)
...+.++..+....|.+|+||=+..+-.. . ...+....+..++..+. ..++.+|.++...
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~----~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALARG--V----SNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTSS--S----CHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHhh--C----ChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 34566677777788999999966555221 0 01123444555555553 2244555555443
No 208
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.15 E-value=0.0035 Score=60.85 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCEEEEe
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSIS 322 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs 322 (720)
++-|.|.|+||+||||+++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 57887765
No 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.14 E-value=0.011 Score=71.82 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh
Q 005003 260 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 260 ~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e 313 (720)
+|.++.+++|.+.+.... ..+-+.|+||.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899999988888775321 1346899999999999999999863
No 210
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.14 E-value=0.0029 Score=63.06 Aligned_cols=34 Identities=38% Similarity=0.693 Sum_probs=28.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
++|.||||+||+|.|+.||+..|++. +|..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 78999999999999999999998765 55566553
No 211
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.14 E-value=0.01 Score=58.89 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=42.7
Q ss_pred ceEEEEccCCChHH-HHHHHHHH--hcCCCEEEEech---hhHHHH---hhh-----chHHHHHHHHHHHhcCCeEEEEc
Q 005003 291 KGVLLVGPPGTGKT-LLAKAIAG--EAGVPFFSISGS---EFVEMF---VGV-----GASRVRDLFKKAKENAPCIVFVD 356 (720)
Q Consensus 291 rgVLL~GPPGTGKT-~LArAlA~--e~g~pf~~vs~s---~~~~~~---~G~-----~~~~vr~lF~~A~~~~P~ILfID 356 (720)
+=.++|||.|+||| .|.+++.+ +.+..++++... .+.+.+ .|. ......++++..+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 35789999999999 89999865 457788877644 221111 110 0111223343332 34699999
Q ss_pred cchhc
Q 005003 357 EIDAV 361 (720)
Q Consensus 357 EID~l 361 (720)
|+..+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99988
No 212
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.12 E-value=0.0033 Score=62.17 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=28.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
.-+.|.||||+||||+++.+++..+++++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 35899999999999999999999987665 444443
No 213
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.12 E-value=0.013 Score=65.88 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=30.9
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
|.....-++|.|+||+|||+++..+|..+ |.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44445569999999999999999997654 5688888764
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.11 E-value=0.0064 Score=59.23 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=27.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
-|.|.|++|+||||+++.+++ .|++++. ..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHH
Confidence 488999999999999999999 8876654 445444
No 215
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.09 E-value=0.0044 Score=67.29 Aligned_cols=71 Identities=24% Similarity=0.432 Sum_probs=43.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC----CCEEEEech-hhH-H---HH-----hhhchHHHHHHHHHHHhcCCeEEE
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGS-EFV-E---MF-----VGVGASRVRDLFKKAKENAPCIVF 354 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g----~pf~~vs~s-~~~-~---~~-----~G~~~~~vr~lF~~A~~~~P~ILf 354 (720)
....++|.||+|+||||+++++++... ..++.+... ++. . .+ +|.....++..+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 344689999999999999999988542 233332211 000 0 00 111122345566666677899999
Q ss_pred Eccch
Q 005003 355 VDEID 359 (720)
Q Consensus 355 IDEID 359 (720)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99983
No 216
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.06 E-value=0.0031 Score=60.92 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=26.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
-|.|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987664
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.06 E-value=0.0029 Score=67.57 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=46.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC--CCEEEEechh-hH-----HH--HhhhchHHHHHHHHHHHhcCCeEEEEccchh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FV-----EM--FVGVGASRVRDLFKKAKENAPCIVFVDEIDA 360 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~-~~-----~~--~~G~~~~~vr~lF~~A~~~~P~ILfIDEID~ 360 (720)
.++|.||+|+||||+++++++... .-.+.+.... +. +. ++..+..+.+..+..|-...|.+|++||...
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 699999999999999999998653 2234443321 10 00 1100234567778888788999999999744
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.05 E-value=0.006 Score=59.94 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
|.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999997653
No 219
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.04 E-value=0.0044 Score=59.66 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 322 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs 322 (720)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99988654
No 220
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.04 E-value=0.0043 Score=60.27 Aligned_cols=30 Identities=37% Similarity=0.661 Sum_probs=27.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
-|.|.|++|+|||++++.+|+.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999887753
No 221
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.02 E-value=0.0052 Score=62.51 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCC--------EEEEechhhHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEFVE 328 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~p--------f~~vs~s~~~~ 328 (720)
.|.-|.|.|+||+|||++|+.|+..++.+ +..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34569999999999999999999999877 34677777653
No 222
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.01 E-value=0.0042 Score=62.84 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=27.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
|.-+.|.||||+||||+++.++..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5579999999999999999999998876543
No 223
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.96 E-value=0.0039 Score=62.32 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=28.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
-|+|.|+||+||||+++.++..++.++ ++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHHH
Confidence 389999999999999999999998755 44445543
No 224
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0049 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 329 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~ 329 (720)
|.-|.|.|++|+|||++++.+|.. |.+++ +..++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 456999999999999999999998 87765 45555443
No 225
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.91 E-value=0.014 Score=64.82 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.8
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
|..+..-++|.|+||+|||++|..+|... |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44455569999999999999999987654 7788888753
No 226
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.90 E-value=0.0093 Score=58.69 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=30.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHhh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 332 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~G 332 (720)
-|.|+|++|+||||+++.++..+|+|++ ++.++.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHH
Confidence 4889999999999999999998887765 55566544433
No 227
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.83 E-value=0.0069 Score=58.85 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC--EEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFS 320 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~p--f~~ 320 (720)
++-|+|.|+||+||||+++.++..++.+ ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3468999999999999999999988763 544
No 228
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.82 E-value=0.023 Score=57.74 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=28.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
-+-|.||||+|||++|+.|+...+++++ +..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 3678999999999999999999998765 4455543
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.80 E-value=0.0076 Score=59.09 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
.++-++|.||||+|||++++.++...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 455799999999999999999999874
No 230
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.79 E-value=0.034 Score=62.83 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCceEEEEccCCChHHHHHHH--HHHhc--CCCEEEEechhhHHH------Hhhh-------------------------
Q 005003 289 IPKGVLLVGPPGTGKTLLAKA--IAGEA--GVPFFSISGSEFVEM------FVGV------------------------- 333 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArA--lA~e~--g~pf~~vs~s~~~~~------~~G~------------------------- 333 (720)
...-++|.||+|+|||+|++. +++-. +-.-+++++.+.... .+|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 344699999999999999999 44432 445666665431100 0000
Q ss_pred -----chHHHHHHHHHHHhcCCeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCcc
Q 005003 334 -----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 408 (720)
Q Consensus 334 -----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~L 408 (720)
................|.+|+|||.-++... .+.+....+.+..++..+.. .++.+|.+|+..+.+
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 0112223333444567889999999776322 01122344455666666542 355677777776654
No 231
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.78 E-value=0.027 Score=64.98 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+++.||||||||+++..+...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 5999999999999988877543
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.77 E-value=0.034 Score=58.40 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechh
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 325 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~ 325 (720)
.++-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45679999999999999999998743 55777776543
No 233
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.76 E-value=0.0027 Score=62.07 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVP 317 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~p 317 (720)
++-|+|.|+||+||||+++.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4569999999999999999999987544
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.74 E-value=0.0061 Score=62.07 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
|.-+.|.||||+|||++++.+|+.++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 456999999999999999999999987654 44444
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.0098 Score=57.18 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=29.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
+.-++|.|+||+|||++++.+|..+ +.++..++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4568999999999999999999876 455666665443
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.69 E-value=0.0086 Score=59.08 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
++-+.|.||+|+|||++++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44689999999999999999998763
No 237
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.67 E-value=0.031 Score=59.99 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=30.0
Q ss_pred cCcCCceEEEEccCCChHHHHHHHHHHh---cCCCEEEEec
Q 005003 286 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISG 323 (720)
Q Consensus 286 g~~~prgVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~ 323 (720)
|..+..-++|.|+||+|||++|..+|.. .+.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3444446999999999999999999776 3778887765
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.65 E-value=0.0052 Score=63.15 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=27.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.+.|.|++|+|||++++.+|+.++.+|+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 699999999999999999999999877653
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.64 E-value=0.0079 Score=59.28 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 327 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~ 327 (720)
+.-++|.|+||+|||++++.+++.+ |.+++.+++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4468999999999999999999865 5678888765543
No 240
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.64 E-value=0.035 Score=53.76 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.4
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.+++.+|+|+|||.++-..+.+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999988877664
No 241
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.63 E-value=0.0035 Score=61.27 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
|.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999998753
No 242
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.61 E-value=0.011 Score=61.33 Aligned_cols=36 Identities=28% Similarity=0.603 Sum_probs=27.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCEEEEechhhH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFV 327 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~s~~~ 327 (720)
|+-|+|.|+||+||||+|+.++... +. ..++...+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHHH
Confidence 4569999999999999999999864 54 445554443
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.011 Score=56.82 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+-+.|.||+|+|||||++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999875
No 244
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.44 E-value=0.033 Score=63.16 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=33.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF 330 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~~~ 330 (720)
|.-|+|+|.||+|||++|+.+|..+ +.+...++..++....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4468999999999999999999987 5566677877766543
No 245
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.42 E-value=0.0096 Score=58.63 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=27.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
|..+.|.|++|+|||++++.++..+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3469999999999999999999999987654
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.41 E-value=0.02 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.++-+.|.||+|+|||+|+++|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999999865
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.41 E-value=0.0069 Score=59.31 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=26.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-CCCEEEEechhh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEF 326 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~-g~pf~~vs~s~~ 326 (720)
.-+.|.|+||+||||+++.+++.. ++++ ++..++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~--i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEE--EEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEE--EeCCcc
Confidence 458899999999999999999987 5444 444443
No 248
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.41 E-value=0.0094 Score=58.81 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|.-|.|.|++|+||||+++.++. +|.+++ +..++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~~ 39 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIAR 39 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHHH
Confidence 44689999999999999999998 777655 4444443
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.41 E-value=0.0072 Score=64.84 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEech
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 324 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s 324 (720)
++-|+|.||+|+|||+|+..||.+++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34699999999999999999999998877766543
No 250
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.40 E-value=0.039 Score=66.57 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=55.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHh-----cCCCE--------------EEEechhhHHHHhhhchHHHHHHHHHHH-hcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGE-----AGVPF--------------FSISGSEFVEMFVGVGASRVRDLFKKAK-ENA 349 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e-----~g~pf--------------~~vs~s~~~~~~~G~~~~~vr~lF~~A~-~~~ 349 (720)
..-++|.||.|+||||+.|.++.- .|..+ -.+...+............++.....++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 346899999999999999998742 22211 0111111111111111112222222222 467
Q ss_pred CeEEEEccchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 350 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 350 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
|.+|++||.-+= -...........++..+. ...+..+|.+|+..+...
T Consensus 753 p~LlLLDEP~~G---------lD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRG---------TSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTT---------SCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 899999998542 112223334445666552 123567888898866544
No 251
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.37 E-value=0.033 Score=54.77 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=41.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH---H----HHhhhc-----hHHHHHHHHHHHhcCCeEEEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV---E----MFVGVG-----ASRVRDLFKKAKENAPCIVFV 355 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~---~----~~~G~~-----~~~vr~lF~~A~~~~P~ILfI 355 (720)
+-.+++||+|+|||+.+-.++..+ +..++.+....-. + ...|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 357889999999999888887754 6666665422110 0 011110 0111345554432 3579999
Q ss_pred ccchhc
Q 005003 356 DEIDAV 361 (720)
Q Consensus 356 DEID~l 361 (720)
||+..+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999887
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.34 E-value=0.023 Score=55.91 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
+.-+.|.||+|+|||||++.|++...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999999764
No 253
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.32 E-value=0.021 Score=62.83 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhh
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 326 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~ 326 (720)
.|.-|+|+|+||+||||+|+.++...+.++ ++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 355689999999999999999999987654 454443
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.31 E-value=0.0092 Score=63.35 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=29.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
.|+-++|.||+|+|||+||..+|...+.+++..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45678999999999999999999998877666554
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.28 E-value=0.012 Score=59.14 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=29.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
+.-+.|.|++|+|||++++.+|+.+|++++ +..++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 446899999999999999999999998765 444444
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.20 E-value=0.011 Score=57.38 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.17 E-value=0.035 Score=54.32 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
+.-+.|.||+|+|||++++.+++.+ +.+++..+...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4468999999999999999999865 667776655443
No 258
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.16 E-value=0.014 Score=59.57 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 319 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~ 319 (720)
-|.|.||+|+||||+++.+|..+|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 5899999999999999999999997665
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.10 E-value=0.016 Score=55.68 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=26.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~ 327 (720)
-+.|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4789999999999999999986543 2456665553
No 260
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.07 E-value=0.087 Score=50.82 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.9
Q ss_pred ceEEEEccCCChHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LA 307 (720)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 47999999999999863
No 261
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.06 E-value=0.033 Score=64.47 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=32.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 326 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~ 326 (720)
+.-|+|+|+||+||||+|++++..+ |.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4569999999999999999999998 999999876554
No 262
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.03 E-value=0.013 Score=60.88 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=28.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~ 328 (720)
|.-|.|+|+||+||||+|+.++ +.|+++ +++.++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~ 110 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGH 110 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHH
Confidence 4469999999999999999999 678765 55555543
No 263
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.11 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.3
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIA 311 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA 311 (720)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998666553
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.84 E-value=0.014 Score=62.57 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
+-|+|.||+|+|||++|+.||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999886554443
No 265
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.83 E-value=0.51 Score=46.01 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=33.2
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHHHHHHHHh
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~LArAlA~e 313 (720)
.+|+|+.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688875555555555431 1233333332211 11256999999999999866555443
No 266
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.80 E-value=0.018 Score=56.97 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=27.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
-|.|.||+|+|||++++.+|..+|.||+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999883
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.73 E-value=0.015 Score=56.88 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
+.-+.|.||+|+||||+++.+++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999876
No 268
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.61 E-value=0.015 Score=65.80 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=44.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEechh-hHH---HH--------hhhchHHHHHHHHHHHhcCCeEEEEc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVE---MF--------VGVGASRVRDLFKKAKENAPCIVFVD 356 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s~-~~~---~~--------~G~~~~~vr~lF~~A~~~~P~ILfID 356 (720)
.++++.||+|+||||+++++++... ...+.+.... +.- .+ ++.....+.++...+....|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 3699999999999999999998763 2344443321 110 00 01111234556666667889999999
Q ss_pred cch
Q 005003 357 EID 359 (720)
Q Consensus 357 EID 359 (720)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 973
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.61 E-value=0.063 Score=59.21 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=52.1
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhcCC---CEEEEech-hhH-
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISGS-EFV- 327 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~g~---pf~~vs~s-~~~- 327 (720)
..+++++.-....+..+.+++ ..+. .-+++.||+|+||||+.+++++.... .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~~g----------gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KRPH----------GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TSSS----------EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---HhcC----------CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 467888764444444444442 2221 14789999999999999999987642 33333211 100
Q ss_pred H-----HHhhhchHHHHHHHHHHHhcCCeEEEEccch
Q 005003 328 E-----MFVGVGASRVRDLFKKAKENAPCIVFVDEID 359 (720)
Q Consensus 328 ~-----~~~G~~~~~vr~lF~~A~~~~P~ILfIDEID 359 (720)
. .+.....-...+.+..+-...|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000000112334445555679999999863
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.59 E-value=0.019 Score=60.97 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=27.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
+-++|.||+|+|||+||..+|...+..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 458899999999999999999998765554443
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.58 E-value=0.016 Score=57.84 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.++++|.||+|+|||++|..++...+ +++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 46899999999999999999998865 55443
No 272
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.57 E-value=0.025 Score=55.38 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=21.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
++-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999865
No 273
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.55 E-value=0.067 Score=56.79 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=29.9
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
...++-++++||+|+|||+++..+|..+ +..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456779999999999999999998754 5666666553
No 274
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.55 E-value=0.073 Score=64.38 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.4
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~ 312 (720)
.-++|.||.|+|||++.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999943
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.52 E-value=0.019 Score=55.34 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999865
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.52 E-value=0.021 Score=55.34 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+||||+++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999999975
No 277
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.45 E-value=0.19 Score=52.32 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhccC----cCCceEEEEccCCChHHHHHHHHHHhc-----CCCEEEEec
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA----RIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 323 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~----~~prgVLL~GPPGTGKT~LArAlA~e~-----g~pf~~vs~ 323 (720)
.+|+++.-.+...+.+.+. .+..+..++.... .-.+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4567665445555444431 1222333332211 112579999999999998765544432 445555543
No 278
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.11 Score=57.35 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=47.0
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc----CCCEEEEechhhHH----H---H---hh---------hc-hHHHHHHHH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE----M---F---VG---------VG-ASRVRDLFK 343 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s~~~~----~---~---~G---------~~-~~~vr~lF~ 343 (720)
..|+.++++|++|+||||++-.+|..+ |..+..+++..+.. . + .+ .. ...++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999998643 77888887763221 1 0 00 01 222356677
Q ss_pred HHHhcCCeEEEEccc
Q 005003 344 KAKENAPCIVFVDEI 358 (720)
Q Consensus 344 ~A~~~~P~ILfIDEI 358 (720)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 766555678888764
No 279
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.35 E-value=0.16 Score=58.82 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=23.5
Q ss_pred eEEEEccCCChHHHHHHHHHHh---cCCCEEEEechh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 325 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s~ 325 (720)
-.|+.||||||||+++-.+... .+.+++.+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3799999999999655444332 366777776553
No 280
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.16 E-value=0.14 Score=57.49 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=26.8
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 322 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs 322 (720)
...+.-+.|.||+|+||||+++.||+.. +..+....
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 3445568999999999999999999864 34444443
No 281
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.11 E-value=0.15 Score=60.81 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.-++|.||.|+|||++.|.++.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999863
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.10 E-value=0.028 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=15.9
Q ss_pred CceEEEEccCCChHHHHHHHHH-Hhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIA-GEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA-~e~ 314 (720)
..-+.|.||+|+||||+++.++ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 764
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.10 E-value=0.093 Score=59.24 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.5
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 323 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~ 323 (720)
..|+.|+++|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999998654 667777776
No 284
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.00 E-value=0.033 Score=54.49 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
+|++|++|+|||++|..++.. +.|.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88988887654
No 285
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.99 E-value=0.048 Score=60.35 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=29.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
.|+.++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999998865 5667777664
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.98 E-value=0.12 Score=55.01 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.4
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446679999999999999999999854
No 287
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.98 E-value=0.27 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.673 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..|+|.|.||+|||+|..++.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 469999999999999999997643
No 288
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.93 E-value=0.027 Score=61.76 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCEEEEe
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 322 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs 322 (720)
++-++|.||+|+|||+|+..+|...+..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 346889999999999999999999887654443
No 289
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.92 E-value=0.12 Score=51.67 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhcc---CcCCceEEEEccCCChHHHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g---~~~prgVLL~GPPGTGKT~LAr 308 (720)
+..+|+++.=.++..+.+.+. .+..+..++... +...+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 446799985444444444321 133344443321 1123579999999999997643
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.90 E-value=0.11 Score=54.37 Aligned_cols=73 Identities=27% Similarity=0.266 Sum_probs=46.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH----H---HH---hh---------hch-HHHHHHHHHH
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG---------VGA-SRVRDLFKKA 345 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~----~---~~---~G---------~~~-~~vr~lF~~A 345 (720)
.++-+.+.|++|+|||++++.+|... +..+..+++.-.. . .+ .+ ..+ ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999998754 5566665542110 0 00 01 011 2235566666
Q ss_pred HhcCCeEEEEccchhc
Q 005003 346 KENAPCIVFVDEIDAV 361 (720)
Q Consensus 346 ~~~~P~ILfIDEID~l 361 (720)
+...+.+|+||+--..
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 6566789999996443
No 291
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.82 E-value=0.38 Score=47.01 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhcc---CcCCceEEEEccCCChHHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLL 306 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g---~~~prgVLL~GPPGTGKT~L 306 (720)
..+|+++.-.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 45688876555555554432 123333333221 11235799999999999976
No 292
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.81 E-value=0.31 Score=46.88 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.3
Q ss_pred ceEEEEccCCChHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LAr 308 (720)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 293
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.81 E-value=0.11 Score=52.22 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=23.4
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005003 293 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 322 (720)
Q Consensus 293 VLL~GPPGTGKT~LArAlA~e~---g~pf~~vs 322 (720)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888886644 67777664
No 294
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.77 E-value=0.2 Score=49.55 Aligned_cols=53 Identities=23% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhcc---CcCCceEEEEccCCChHHHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g---~~~prgVLL~GPPGTGKT~LA 307 (720)
..+|+++.-.+...+.+.+. .+..+..++... +...+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688876555555554431 122333333211 112357999999999999853
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.76 E-value=0.034 Score=58.19 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=29.6
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcCC-----CEEEE-echhhH
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSI-SGSEFV 327 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g~-----pf~~v-s~s~~~ 327 (720)
..|.-|.|.||+|+||||+++.+++.++. +.+.+ +...|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 34556889999999999999999887642 33444 666553
No 296
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.74 E-value=0.033 Score=55.39 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||++.+++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999976
No 297
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.74 E-value=0.27 Score=52.59 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~ 323 (720)
.-|.|.|+||+|||+++.+++..+ |..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 458999999999999999998764 555555543
No 298
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.72 E-value=0.11 Score=59.70 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=33.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC----CCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g----~pf~~vs~s~~~~ 328 (720)
+.-|+|.|+||+|||++|++++..++ .+++.++...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 45689999999999999999999875 8888888766543
No 299
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.70 E-value=0.15 Score=56.69 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=30.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 329 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~~~ 329 (720)
|.-|+|.|.||+|||++++.++..++ .+...++..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 44699999999999999999998764 55666665555443
No 300
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.66 E-value=0.15 Score=53.46 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=44.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhH----H---HH---hh---------h-chHHHHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG---------V-GASRVRDLFKKAK 346 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~----~---~~---~G---------~-~~~~vr~lF~~A~ 346 (720)
++-+++.|++|+|||+++..+|..+ +..+..+++.-+. + .+ .+ . ....+++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998755 6677776654211 0 00 00 0 1122345666665
Q ss_pred hcCCeEEEEccch
Q 005003 347 ENAPCIVFVDEID 359 (720)
Q Consensus 347 ~~~P~ILfIDEID 359 (720)
.....+++||=.-
T Consensus 178 ~~~~D~ViIDTpg 190 (297)
T 1j8m_F 178 SEKMEIIIVDTAG 190 (297)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 4566788888743
No 301
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.65 E-value=0.11 Score=51.82 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhcc---CcCCceEEEEccCCChHHHHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g---~~~prgVLL~GPPGTGKT~LAr 308 (720)
.+..+|+++.-.++..+.+.+. .+..|..++... +...+.+++.+|+|+|||..+-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 3445677764444444443321 122233332211 1113579999999999997643
No 302
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.63 E-value=0.28 Score=48.56 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCCCCccccccchHHHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~LA 307 (720)
.+..+|+++.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3456788875555555544431 1233333332211 12357999999999999763
No 303
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.60 E-value=0.16 Score=49.98 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=31.6
Q ss_pred cCCCCCccccccchH-HHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHHHH
Q 005003 250 PNTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 250 ~~~~~~f~dI~G~de-~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~LAr 308 (720)
+.+..+|+|..+..+ ..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 445567888655543 33333221 1333433333211 123579999999999997543
No 304
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.49 E-value=0.047 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||.|+|||+|++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999986
No 305
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.45 E-value=0.043 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g 315 (720)
-+.|.||+|+|||||++++++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999863
No 306
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.44 E-value=0.04 Score=55.55 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=26.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 320 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~ 320 (720)
-|.|.|++|||||++++.+|..+|++|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999854
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.41 E-value=0.084 Score=55.54 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.9
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455678999999999999999999864
No 308
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.41 E-value=0.15 Score=60.60 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999977777544
No 309
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.40 E-value=0.032 Score=58.39 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=26.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC---CCEEEEechhhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g---~pf~~vs~s~~~ 327 (720)
-|.|.||+|+||||+|+.++..++ ..+..++..++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 588999999999999999998765 456667766654
No 310
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.35 E-value=0.31 Score=53.74 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=28.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEech
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 324 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s 324 (720)
.|+.+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 56678899999999999999998754 5566666553
No 311
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.34 E-value=0.023 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g 315 (720)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998774
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.32 E-value=0.046 Score=55.15 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVP 317 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~p 317 (720)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47899999999999999999987654
No 313
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.31 E-value=0.2 Score=58.33 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceEEEEccCCChHHHHHHHH-HHhc--CCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAI-AGEA--GVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAl-A~e~--g~pf~~vs~ 323 (720)
+.+++.+|+|+|||+.+-.. .... +...+++..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 47999999999999987433 2221 455555543
No 314
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=93.22 E-value=0.2 Score=44.19 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=40.4
Q ss_pred CCccccHHHHH-HHHhcCCeeEEEEeeCCeEEEEEecCcccCCceeEEEEEcCCCcHHHHHHHHhc
Q 005003 118 SSSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREK 182 (720)
Q Consensus 118 ~~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (720)
...+|||++|. ++|++|.|++|.+..+ ..+.+...+.........+.+.++. .+.+.+.|++.
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk-~~v~V~l~~~a~~~~~~~~~f~IGS-vd~FE~~Le~a 77 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNK-RFVRVTFTPGKTPVDGQYVWFNIGS-VDTFERNLETL 77 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETT-TEEEEEECTTTSCSTTCCEEEECSC-HHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcC-CEEEEEEcCCCcCCCCceEEEEeCC-HHHHHHHHHHH
Confidence 45689999999 7999999999998744 3433443332211112335667763 45676666553
No 315
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.11 E-value=0.077 Score=53.35 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC--CCEEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSI 321 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g--~pf~~v 321 (720)
+.-|.|.||||+||||+++.+++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34588999999999999999999875 566544
No 316
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.01 E-value=0.18 Score=53.60 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.4
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhcC-----CCEEEEechhh
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF 326 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~g-----~pf~~vs~s~~ 326 (720)
..|.-+.|.||+|+||||+++.+++.++ ..+..++...+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3455689999999999999999998764 23555555544
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.00 E-value=0.056 Score=57.14 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.1
Q ss_pred cCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 288 RIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 288 ~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
+...-+.|+||+|+|||+|++.|++-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 333458999999999999999999876
No 318
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.94 E-value=0.23 Score=58.07 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=22.4
Q ss_pred CceEEEEccCCChHHHHHH-HHHHh---cCCCEEEEe
Q 005003 290 PKGVLLVGPPGTGKTLLAK-AIAGE---AGVPFFSIS 322 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LAr-AlA~e---~g~pf~~vs 322 (720)
.+.++++||+|+|||+.+- ++... .+...+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 5689999999999998873 33221 244555554
No 319
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.73 E-value=0.17 Score=57.79 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=31.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC----CCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g----~pf~~vs~s~~~~ 328 (720)
+..+.|.|++|+||||++++||+.++ ..+..+++.++..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 34589999999999999999999874 3566677766643
No 320
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.70 E-value=0.27 Score=56.22 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 348899999999999999998854
No 321
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.68 E-value=0.32 Score=49.38 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=48.9
Q ss_pred eEEEEccCCChHHHHHHHHHH---hcCCCEEEEech-------hhHHHHhhhc-----hHHHHHHHHHHHhcCCeEEEEc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGS-------EFVEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 356 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~---e~g~pf~~vs~s-------~~~~~~~G~~-----~~~vr~lF~~A~~~~P~ILfID 356 (720)
-.+++||.|+|||+.+-..+. ..|..++.+... .+.+.. |.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 467899999999976665544 346666655421 111111 110 01112345554 335799999
Q ss_pred cchhcccccCCCCCCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCC
Q 005003 357 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 404 (720)
Q Consensus 357 EID~l~~~r~~~~~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~ 404 (720)
|+..+. + +.+++..++. .++.||++.-+
T Consensus 98 EaQF~~-----------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFP-----------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGCT-----------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhhh-----------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 998871 1 4455555543 45567777644
No 322
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.64 E-value=0.22 Score=58.95 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.6
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~ 312 (720)
..-++|.||.|+|||++.|.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 34689999999999999999986
No 323
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.60 E-value=0.12 Score=55.79 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.0
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhc
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456679999999999999999999864
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.58 E-value=0.078 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e 313 (720)
.+|+||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 358999999999999999999874
No 325
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.50 E-value=0.4 Score=50.95 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccCc---CCceEEEEccCCChHHHHHHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIA 311 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~~---~prgVLL~GPPGTGKT~LArAlA 311 (720)
...+|+++.-.++..+.+.+. .+..+..++.-.++ ..+.+++.+|+|+|||..+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345788886555555554431 12223333322111 12569999999999998654443
No 326
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.45 E-value=0.097 Score=56.37 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=43.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCEEEEech-hhH-----HH--Hh-------hh-chHHHHHHHHHHHhcCCeE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFV-----EM--FV-------GV-GASRVRDLFKKAKENAPCI 352 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g--~pf~~vs~s-~~~-----~~--~~-------G~-~~~~vr~lF~~A~~~~P~I 352 (720)
..++|.||+|+||||+++++++... .-.+.+... ++. .. ++ +. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998653 223333321 110 00 00 10 1123566777777778999
Q ss_pred EEEccch
Q 005003 353 VFVDEID 359 (720)
Q Consensus 353 LfIDEID 359 (720)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999974
No 327
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.44 E-value=0.11 Score=58.00 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887653
No 328
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.11 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
...|++.|++|+|||+|..++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 329
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.38 E-value=0.23 Score=57.84 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=23.1
Q ss_pred CceEEEEccCCChHHHHHHHHH-H---hcCCCEEEEec
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIA-G---EAGVPFFSISG 323 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA-~---e~g~pf~~vs~ 323 (720)
.+.++++||+|+|||+.+-..+ . ..+...+++..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5689999999999999874332 2 12455555543
No 330
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.34 E-value=0.76 Score=48.42 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=30.6
Q ss_pred CccccccchHHHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHHHHHHHH
Q 005003 255 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 255 ~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~LArAlA~ 312 (720)
+|+++.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-
T Consensus 9 ~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 566665444444444331 1222333332211 1135799999999999987644433
No 331
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.32 E-value=0.22 Score=55.24 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
+-.++.|+||||||++.+.++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999888754
No 332
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.27 E-value=0.083 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
|+-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 333
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.23 E-value=0.14 Score=51.41 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=36.2
Q ss_pred EEEEccCCChHHH-HHHHH--HHhcCCCEEEEech-hhH------HHHhhhc-----hHHHHHHHHHHHhcCCeEEEEcc
Q 005003 293 VLLVGPPGTGKTL-LAKAI--AGEAGVPFFSISGS-EFV------EMFVGVG-----ASRVRDLFKKAKENAPCIVFVDE 357 (720)
Q Consensus 293 VLL~GPPGTGKT~-LArAl--A~e~g~pf~~vs~s-~~~------~~~~G~~-----~~~vr~lF~~A~~~~P~ILfIDE 357 (720)
.+++||.|+|||+ |.+.+ +...+..++.+... +-. ....|.. .....++++.. .....+|+|||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~IDE 109 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGIDE 109 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEec
Confidence 6889999999999 55554 22346666555331 100 0001110 01112333322 23567999999
Q ss_pred chhc
Q 005003 358 IDAV 361 (720)
Q Consensus 358 ID~l 361 (720)
+..+
T Consensus 110 aQFf 113 (219)
T 3e2i_A 110 VQFF 113 (219)
T ss_dssp GGGS
T ss_pred hhcC
Confidence 9998
No 334
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.23 E-value=0.14 Score=51.12 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=29.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechhhHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 331 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~~~~~~~ 331 (720)
.|-|+|..|||||++++.++. .|+|++ ++..+.....
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~ 47 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRIT 47 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHh
Confidence 589999999999999999998 888876 4555444433
No 335
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.22 E-value=0.29 Score=50.33 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~ 323 (720)
+.+++.+|+|+|||..+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 369999999999998777766666666666544
No 336
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.20 E-value=0.35 Score=47.25 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.3
Q ss_pred ceEEEEccCCChHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LAr 308 (720)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 337
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.16 E-value=0.36 Score=51.80 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=25.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
++++..|+|+|||..+-+++.+. +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999888876654 5666666553
No 338
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.06 E-value=0.044 Score=55.84 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFF 319 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~-g~pf~ 319 (720)
+.-|.|.|++|+||||+++.|+..+ +.+++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4468999999999999999999998 44443
No 339
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.05 E-value=0.75 Score=49.05 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=32.2
Q ss_pred CCCccccccchHHHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHHHHHH
Q 005003 253 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAI 310 (720)
Q Consensus 253 ~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~LArAl 310 (720)
..+|+++.-.++..+.+.+. -+..|..++...+ ...+.+++.+|+|+|||..+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 45788876555555554431 1233333332211 12357999999999999765543
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.00 E-value=0.15 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g 315 (720)
+.-+.|.||+|+||||+++.+++..+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 341
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.93 E-value=0.36 Score=55.47 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||++.+++..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 458999999999999999998844
No 342
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.89 E-value=0.32 Score=55.34 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 328 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~s~~~~ 328 (720)
+.-|+|+|+||+|||++|+.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999865 56788888766544
No 343
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.82 E-value=0.14 Score=64.37 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.8
Q ss_pred hhccCcCCc--eEEEEccCCChHHHHHHHHHHhc
Q 005003 283 TAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 283 ~~~g~~~pr--gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
+.+....|+ -+.|+||+|+|||++++.+.+..
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 333444444 58999999999999999998865
No 344
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.76 E-value=0.26 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||++.+++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998844
No 345
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.27 Score=56.72 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCCCEEEE---------------------------------------------
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI--------------------------------------------- 321 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~pf~~v--------------------------------------------- 321 (720)
.....-+.|.||+|+|||||.+.|++...-.-=.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Q ss_pred ------echhhHHHHhhhchHHHHHHHHH--------------------------HHhcCCeEEEEccchhcccccCCCC
Q 005003 322 ------SGSEFVEMFVGVGASRVRDLFKK--------------------------AKENAPCIVFVDEIDAVGRQRGTGI 369 (720)
Q Consensus 322 ------s~s~~~~~~~G~~~~~vr~lF~~--------------------------A~~~~P~ILfIDEID~l~~~r~~~~ 369 (720)
...++..........++.++++. |-...|.+|++||--+-.
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~L------- 252 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYL------- 252 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTC-------
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCC-------
Q ss_pred CCCChHHHHHHHHHHhhhcCccCCCcEEEEEEeCCCCccc
Q 005003 370 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 409 (720)
Q Consensus 370 ~~~~~e~~~~ln~LL~~ldg~~~~~~ViVIaaTN~p~~LD 409 (720)
+......+..++..+. ..+..||..|++.+.++
T Consensus 253 ---D~~~~~~l~~~l~~l~----~~g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 253 ---DVKQRLNAAQIIRSLL----APTKYVICVEHDLSVLD 285 (608)
T ss_dssp ---CHHHHHHHHHHHHGGG----TTTCEEEEECSCHHHHH
T ss_pred ---CHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHH
No 346
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.71 E-value=0.32 Score=59.39 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=18.8
Q ss_pred ceEEEEccCCChHHHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAKAI 310 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAl 310 (720)
.-++|+||.|+|||++.|.+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 56999999999999999999
No 347
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.70 E-value=0.4 Score=53.90 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=15.0
Q ss_pred CceEEEEccCCChHHHH
Q 005003 290 PKGVLLVGPPGTGKTLL 306 (720)
Q Consensus 290 prgVLL~GPPGTGKT~L 306 (720)
.+.+++.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 45899999999999974
No 348
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.70 E-value=0.1 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+.-+.|.||+|+|||||++.|++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34458899999999999999999865
No 349
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.67 E-value=0.35 Score=53.12 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEech-hhH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV 327 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s-~~~ 327 (720)
.++|++|+|+|||..+-.++...+.+++.+... .+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 599999999999999988888888888777655 444
No 350
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.56 E-value=0.81 Score=48.03 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.1
Q ss_pred CceEEEEccCCChHHHHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLAKAI 310 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAl 310 (720)
++.+++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 368999999999999865443
No 351
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.43 E-value=0.41 Score=54.34 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=31.1
Q ss_pred CCCCCccccccchHHHHHHHHHHHHh--cCchhhhhccCc-----CCceEEEEccCCChHHHH
Q 005003 251 NTGVTFDDVAGVDEAKQDFMEVVEFL--KKPERFTAIGAR-----IPKGVLLVGPPGTGKTLL 306 (720)
Q Consensus 251 ~~~~~f~dI~G~de~k~eL~eiv~~l--~~p~~~~~~g~~-----~prgVLL~GPPGTGKT~L 306 (720)
..+.+|+++........++.+.+..+ ..+..++.-.++ ..+.+++.+|+|+|||..
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34567777763333334444444432 223333322111 345799999999999984
No 352
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.41 E-value=0.11 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..-+.|.|++|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999998763
No 353
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.41 E-value=0.87 Score=54.05 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005003 263 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 323 (720)
Q Consensus 263 de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~ 323 (720)
+.+++.+.++...+..+ .|..+|+.||.|+|||..+-..+-.. +...+.+..
T Consensus 371 ~~Q~~ai~~I~~~l~~~---------~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 371 NAQKRAHQEIRNDMISE---------KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHHHHHHHSS---------SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred HHHHHHHHHHHhhcccc---------CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34455555555544332 24579999999999998776554332 555665544
No 354
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.38 E-value=1.7 Score=47.98 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=24.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCEEEEech
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 324 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~--------g~pf~~vs~s 324 (720)
+.+++.+|+|+|||..+-..+-+. +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 369999999999998766665433 5556666543
No 355
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.34 E-value=0.076 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999999865
No 356
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.30 E-value=0.088 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=21.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999864
No 357
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.27 E-value=0.078 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||++.+++-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998853
No 358
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.26 E-value=0.47 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||||+|||||.+++++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999998754
No 359
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.21 E-value=0.071 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 360
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.14 E-value=1.2 Score=49.37 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=23.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhc--------CCCEEEEec
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 323 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~--------g~pf~~vs~ 323 (720)
.+++.+|+|+|||..+-..+-+. +..++.+..
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 69999999999998766655433 555565544
No 361
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.12 E-value=0.53 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..|++.|.+|+|||+|..++.+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998754
No 362
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.08 E-value=0.25 Score=56.18 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=30.5
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHHh
Q 005003 259 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 259 I~G~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~e 313 (720)
+.-.+.+.+.+..+++.+... .+.+++++|+|+|||..+-.++..
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHH
Confidence 344456666666666655432 236899999999999988777654
No 363
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.02 E-value=0.13 Score=58.13 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=24.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV 316 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~ 316 (720)
+..|+|.|.+|+||||++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999874
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.98 E-value=0.13 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 005003 289 IPKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 289 ~prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568999999999999999999865
No 365
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.96 E-value=0.2 Score=49.85 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=25.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 322 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs 322 (720)
+-|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 357889999999999999998866 56666543
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.89 E-value=0.14 Score=48.64 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g 315 (720)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999988764
No 367
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.86 E-value=0.084 Score=52.46 Aligned_cols=22 Identities=50% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+.|.||+|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 368
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.81 E-value=0.38 Score=48.18 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.9
Q ss_pred ceEEEEccCCChHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LAr 308 (720)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999997543
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.75 E-value=0.23 Score=47.95 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCEEEEe
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 322 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs 322 (720)
+-+.+.|++|+|||+++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999998864 55555554
No 370
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.68 E-value=0.13 Score=47.27 Aligned_cols=21 Identities=52% Similarity=0.947 Sum_probs=19.2
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~ 312 (720)
-|++.|+||+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 371
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.65 E-value=0.093 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998764
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.64 E-value=0.096 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 373
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.57 E-value=1.3 Score=47.01 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCccccccchHHHHHHHHHHHHhcCchhhhhcc---CcCCceEEEEccCCChHHHHHH
Q 005003 254 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 254 ~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g---~~~prgVLL~GPPGTGKT~LAr 308 (720)
.+|+++.-.+...+.+.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4677766555555544431 122333333211 1123469999999999998743
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.47 E-value=0.52 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..-+.+.|+||+|||+++.+++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998754
No 375
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.45 E-value=0.14 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.|++|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999853
No 376
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.44 E-value=0.098 Score=53.54 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 377
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.38 E-value=0.24 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..+++.|++|+|||+++..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 378
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.38 E-value=0.13 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 379
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.32 E-value=0.12 Score=52.76 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+.|.||+|+|||||.+.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999985
No 380
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.29 E-value=0.1 Score=52.50 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||.|+|||||.+.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999854
No 381
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.27 E-value=0.11 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||.+.+++-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999999864
No 382
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.26 E-value=0.13 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+.|.||+|+|||||.+.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999985
No 383
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.25 E-value=0.17 Score=51.09 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=22.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc-------CCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~-------g~pf~~vs 322 (720)
-|.|.||+|+||||+++.++..+ |.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 48888999999999999999876 66666543
No 384
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.21 E-value=0.099 Score=52.23 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998854
No 385
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.15 E-value=0.89 Score=47.86 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~LA 307 (720)
...+|+++.=.+...+.+... .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 345788875555555544431 1233333332211 11357999999999999864
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.15 E-value=0.11 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48899999999999999999865
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.13 E-value=0.42 Score=47.51 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-|+|.|++|+|||+|..++.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5999999999999999999874
No 388
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.13 E-value=0.11 Score=52.73 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999864
No 389
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.12 E-value=0.11 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||++.|++-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999865
No 390
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.10 E-value=0.11 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998864
No 391
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.09 E-value=0.44 Score=48.39 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.1
Q ss_pred ceEEEEccCCChHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LAr 308 (720)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 369999999999997643
No 392
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.04 E-value=0.15 Score=54.65 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEAGV 316 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~g~ 316 (720)
..-+.|.||+|+|||||++.|++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999998654
No 393
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.93 E-value=0.13 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.++||+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999843
No 394
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.92 E-value=0.11 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||++.+++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998854
No 395
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.78 E-value=0.12 Score=52.91 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAG 315 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g 315 (720)
-+.|.||+|+|||||.+.+++-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998653
No 396
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.75 E-value=0.13 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999864
No 397
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.73 E-value=0.13 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||.|+|||||.+.+++-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 398
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.71 E-value=0.18 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+++.|++|+|||+|+.++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 399
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.69 E-value=1.8 Score=47.36 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=23.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc-----CCCEEEE
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 321 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~-----g~pf~~v 321 (720)
-++|.||||+|||+|++.+|+.. ++.++++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 49999999999999999998753 4444444
No 400
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.66 E-value=0.17 Score=46.30 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 401
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.63 E-value=1.1 Score=47.69 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=29.2
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhcc---CcCCceEEEEccCCChHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG---ARIPKGVLLVGPPGTGKTLL 306 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g---~~~prgVLL~GPPGTGKT~L 306 (720)
+..+|+++.=.+...+.+... .+..|..++... +...+.+++.+|+|+|||+.
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 345688874444444444321 123333333221 11235799999999999974
No 402
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.61 E-value=0.12 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||++++++-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999999864
No 403
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.58 E-value=0.17 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+.|.||+|+|||||.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 404
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.51 E-value=1.5 Score=53.94 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=22.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCEEEEec
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 323 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~---g~pf~~vs~ 323 (720)
.+|++||.|+|||+.+-..+-.. +...+++..
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 69999999999998765554433 555555554
No 405
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.49 E-value=0.13 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999864
No 406
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.47 E-value=0.14 Score=55.06 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.||+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999854
No 407
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.45 E-value=1.2 Score=42.91 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|+|.|++|+|||+|..++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 408
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.45 E-value=0.13 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999865
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.44 E-value=0.33 Score=48.58 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 319 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~ 319 (720)
+-|.+.|++|+|||++++.++..++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45889999999999999999999876543
No 410
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.40 E-value=0.16 Score=54.89 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999843
No 411
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.37 E-value=0.22 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..|++.|++|+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998864
No 412
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.36 E-value=0.16 Score=54.92 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999843
No 413
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.30 E-value=0.15 Score=54.94 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.||+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999843
No 414
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.26 E-value=0.16 Score=55.23 Aligned_cols=23 Identities=48% Similarity=0.741 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.|.||+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999843
No 415
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.24 E-value=0.15 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.+.|.||+|+|||||++.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 416
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.23 E-value=0.16 Score=55.01 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.||+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999843
No 417
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.17 E-value=0.89 Score=45.71 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.4
Q ss_pred ceEEEEccCCChHHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLAK 308 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LAr 308 (720)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999997643
No 418
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.12 E-value=0.17 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+.|.|+||+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 419
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.08 E-value=0.21 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 420
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.06 E-value=1.3 Score=48.25 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCCCccccccchHHHHHHHHHHHHhcCchhhhhccC---cCCceEEEEccCCChHHHH
Q 005003 252 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLL 306 (720)
Q Consensus 252 ~~~~f~dI~G~de~k~eL~eiv~~l~~p~~~~~~g~---~~prgVLL~GPPGTGKT~L 306 (720)
+-.+|+++.-.+...+.+.+. .+..|..++...+ ...+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 445788865444444443321 1333433333211 1235799999999999984
No 421
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.02 E-value=0.2 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=1 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-|++.|++|+|||+|...+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.96 E-value=0.15 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.9
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-|+|.|++|+|||+|.+.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.95 E-value=0.22 Score=50.53 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCC-EEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA---GVP-FFSI 321 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~---g~p-f~~v 321 (720)
++-|.|.|++|+|||++++.++..+ +.+ +..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4568899999999999999998865 556 4433
No 425
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=88.90 E-value=0.77 Score=50.29 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=21.7
Q ss_pred ceEEEEccCCChHHHHH-HHHHH---hcCCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLA-KAIAG---EAGVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LA-rAlA~---e~g~pf~~vs~ 323 (720)
+.+|+.||+|+|||..+ .++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 47999999999999875 43332 33444554443
No 426
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.89 E-value=0.17 Score=54.91 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.||+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48899999999999999999843
No 427
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.80 E-value=0.18 Score=58.14 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=24.5
Q ss_pred eEEEEccCCChHHHHHHHHHHh----cCCCEEEEech
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGS 324 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e----~g~pf~~vs~s 324 (720)
..++.||||||||+++..++.. .+.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 4799999999999987777554 24566666554
No 428
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.71 E-value=0.51 Score=54.87 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.8
Q ss_pred eEEEEccCCChHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAI 310 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAl 310 (720)
-+.|.||+|+|||||++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4889999999999999764
No 429
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.68 E-value=0.23 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..|++.|++|+|||+|..++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999874
No 430
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.68 E-value=0.93 Score=47.10 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.6
Q ss_pred CceEEEEccCCChHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LA 307 (720)
++.+++++|+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 468999999999999753
No 431
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.67 E-value=0.14 Score=55.02 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.||+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999843
No 432
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.67 E-value=0.23 Score=45.40 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.|++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998643
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.65 E-value=0.17 Score=52.23 Aligned_cols=23 Identities=48% Similarity=0.836 Sum_probs=21.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+.+++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999875
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.64 E-value=0.43 Score=46.57 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+++.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358889999999999999998875
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.61 E-value=0.2 Score=46.34 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=20.0
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-|++.|+||+|||+|.+++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999764
No 436
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.51 E-value=0.24 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.|++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 437
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.45 E-value=0.37 Score=60.48 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.-+-|+||+|+|||||++.+.+-
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 34889999999999999999873
No 438
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.33 E-value=0.24 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 439
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.32 E-value=0.22 Score=46.83 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-|+|.|++|+|||+|.+++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 440
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.29 E-value=0.25 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 441
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=88.25 E-value=1.1 Score=44.31 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=14.8
Q ss_pred ceEEEEccCCChHHHHH
Q 005003 291 KGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LA 307 (720)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999764
No 442
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.22 E-value=0.25 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999865
No 443
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.18 E-value=0.2 Score=47.42 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..|++.|++|+|||+|..++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 444
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.16 E-value=0.76 Score=48.96 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=22.4
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHh
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e 313 (720)
...| -|.+.|++|+|||++..++.+.
T Consensus 32 ~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 3556 5999999999999999999884
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.11 E-value=0.24 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 446
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.09 E-value=0.26 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..|++.|++|+|||+|...+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999774
No 447
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.06 E-value=0.21 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+.|.||+|+|||||.+.|++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4899999999999999999973
No 448
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.03 E-value=0.27 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 449
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.94 E-value=0.19 Score=52.56 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=24.6
Q ss_pred hhccCcCCc--eEEEEccCCChHHHHHHHHHHhc
Q 005003 283 TAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 283 ~~~g~~~pr--gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.......++ -+.|.||.|+|||||.+.+++-.
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334444444 48899999999999999998854
No 450
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.90 E-value=0.23 Score=45.63 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.1
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~ 312 (720)
-|++.|+||+|||+|..++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 451
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.89 E-value=0.28 Score=44.79 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 452
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.88 E-value=0.31 Score=45.18 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.-|++.|++|+|||+|..++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999763
No 453
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.88 E-value=0.27 Score=45.58 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999753
No 454
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.82 E-value=0.28 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..|++.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999873
No 455
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.75 E-value=0.31 Score=48.53 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=23.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEEEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 321 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~~v 321 (720)
.-+.|.||.|+||||+++.+++. +..+...
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34889999999999999999987 4444433
No 456
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.69 E-value=0.29 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 457
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.67 E-value=0.36 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 458
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=87.55 E-value=1.7 Score=47.61 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.8
Q ss_pred CceEEEEccCCChHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LA 307 (720)
++.+++.+|+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 468999999999999764
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.55 E-value=0.33 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
..|++.|++|+|||+|+..+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 460
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.51 E-value=0.54 Score=46.65 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.6
Q ss_pred CcCCceEEEEccCCChHHHHHHHHHHhcCC-CEEEEechhhH
Q 005003 287 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFV 327 (720)
Q Consensus 287 ~~~prgVLL~GPPGTGKT~LArAlA~e~g~-pf~~vs~s~~~ 327 (720)
..+++-|+|+|.||+||+++|+.+.+..+. .+..++.++-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 345667999999999999999999887753 24445666543
No 461
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.47 E-value=0.29 Score=45.25 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 462
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.46 E-value=0.33 Score=48.80 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=24.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCEEE
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFS 320 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e~----g~pf~~ 320 (720)
++-|.|.|++|+|||++++.++..+ |.+++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4458888999999999999999865 446555
No 463
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.36 E-value=3.2 Score=49.02 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~--------g~pf~~vs~ 323 (720)
+.+++.+|.|+|||..+-..+-.. +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 469999999999998776665443 556666654
No 464
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.35 E-value=0.79 Score=43.22 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.-|++.|++|+|||+|.+++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 465
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.30 E-value=0.31 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.|++.|++|+|||+|..++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.26 E-value=0.2 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.-+.|.||+|+|||||++.+++-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 458999999999999999998754
No 467
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.12 E-value=0.32 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-|++.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999987654
No 468
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.12 E-value=0.32 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-|++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998743
No 469
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.10 E-value=0.31 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 470
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.06 E-value=0.38 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-+.|.||+|+|||||.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999984
No 471
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.03 E-value=0.33 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 472
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.02 E-value=2.9 Score=48.49 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=28.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCEEEEechh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 325 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~g~pf~~vs~s~ 325 (720)
..+|.|.+|+|||.++..++.+.+.|++.+....
T Consensus 30 ~~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~ 63 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAKVIEALGRPALVLAPNK 63 (664)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSH
T ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCH
Confidence 4678999999999999988888889988877654
No 473
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.01 E-value=0.31 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.4
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-|++.|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 474
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.01 E-value=0.41 Score=44.97 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
--|++.|++|+|||+|..++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 475
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.98 E-value=0.33 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999874
No 476
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.91 E-value=0.33 Score=45.97 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 477
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.89 E-value=0.6 Score=46.74 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=25.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--CCCEEEEec
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISG 323 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~--g~pf~~vs~ 323 (720)
.-+++.|.+|+|||+++..+|..+ +..+..+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 458899999999999999998654 555555553
No 478
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.86 E-value=0.16 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.-+.|.|++|+|||+|.+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999754
No 479
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.83 E-value=0.33 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|.+++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.83 E-value=0.39 Score=50.87 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=22.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPF 318 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf 318 (720)
+|++|.|++|+|||++|.++... |..+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 48999999999999999999875 4433
No 481
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.81 E-value=0.34 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 482
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.79 E-value=0.33 Score=45.66 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.4
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
-|.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 483
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.71 E-value=1.6 Score=46.16 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.8
Q ss_pred CceEEEEccCCChHHHHH
Q 005003 290 PKGVLLVGPPGTGKTLLA 307 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LA 307 (720)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 467999999999999875
No 484
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.69 E-value=0.38 Score=46.06 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 005003 290 PKGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 290 prgVLL~GPPGTGKT~LArAlA~e 313 (720)
...|++.|++|+|||+|..++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999764
No 485
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.61 E-value=0.29 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.59 E-value=0.59 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e 313 (720)
.++++.||+|+|||++++.++..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998765
No 487
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.33 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||+|.|++-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 49999999999999999999854
No 488
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=86.50 E-value=2.5 Score=46.70 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.5
Q ss_pred eEEEEccCCChHHHHHHHHHHh----cCCCEEEEec
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISG 323 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e----~g~pf~~vs~ 323 (720)
.++++||+|+|||..+-.++.. .+.+++.+..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 6899999999999998766654 2335555554
No 489
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.46 E-value=0.33 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.5
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 005003 292 GVLLVGPPGTGKTLLAKAIAG 312 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~ 312 (720)
.|++.|++|+|||+|..++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999965
No 490
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.40 E-value=0.34 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-|.|.|++|+||||+++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48889999999999999998865
No 491
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=86.40 E-value=2 Score=52.40 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=23.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh---cCCCEEEEech
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 324 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e---~g~pf~~vs~s 324 (720)
++++.+|.|+|||..+...... .+...+++...
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 6999999999999977543322 35566666543
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.40 E-value=0.56 Score=46.30 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=25.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc--CCCEEEEe
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSIS 322 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~--g~pf~~vs 322 (720)
=|.|.|+.|+||||+++.++..+ +.+++...
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 37889999999999999999876 56666553
No 493
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.39 E-value=0.31 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-+.|.||+|+|||||.+++++-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48899999999999999999854
No 494
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.37 E-value=3.4 Score=51.16 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHhcCchhhhhccCcCCceEEEEccCCChHHHHHHHHHH---hcCCCEEEEec
Q 005003 262 VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISG 323 (720)
Q Consensus 262 ~de~k~eL~eiv~~l~~p~~~~~~g~~~prgVLL~GPPGTGKT~LArAlA~---e~g~pf~~vs~ 323 (720)
.+.+++.+..+...+... .|..+|++||.|+|||..+-..|- ..+..++.+..
T Consensus 605 t~~Q~~ai~~il~~~~~g---------~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQP---------LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSS---------SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHhcC---------CcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 345555555666544332 245799999999999987653332 33555555543
No 495
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.35 E-value=0.39 Score=44.82 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~ 314 (720)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
No 496
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.31 E-value=0.38 Score=44.64 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEA 314 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~ 314 (720)
..|++.|++|+|||+|..++.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 369999999999999999998643
No 497
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.24 E-value=0.39 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 498
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.21 E-value=0.39 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGE 313 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e 313 (720)
.|++.|++|+|||+|..++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 499
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=86.19 E-value=0.32 Score=51.45 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=22.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCEE
Q 005003 291 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 319 (720)
Q Consensus 291 rgVLL~GPPGTGKT~LArAlA~e~g~pf~ 319 (720)
+|+||.|++|+|||++|.++.. .|..++
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 4899999999999999999865 354443
No 500
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.09 E-value=0.33 Score=57.86 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=23.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCEEEEech
Q 005003 292 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 324 (720)
Q Consensus 292 gVLL~GPPGTGKT~LArAlA~e~----g~pf~~vs~s 324 (720)
-.++.||||||||+++..++..+ +..++.+..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 47999999999998877776542 4556555443
Done!