Query 005004
Match_columns 720
No_of_seqs 223 out of 3109
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 16:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-39 2.5E-44 384.6 28.2 523 8-697 69-609 (968)
2 PLN00113 leucine-rich repeat r 100.0 7E-38 1.5E-42 369.4 25.9 485 2-554 87-587 (968)
3 KOG4194 Membrane glycoprotein 99.9 8E-28 1.7E-32 239.8 2.8 381 11-522 55-448 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.3E-26 2.9E-31 231.2 3.5 363 125-551 81-452 (873)
5 KOG0472 Leucine-rich repeat pr 99.9 4.4E-28 9.6E-33 231.3 -9.8 458 10-550 47-540 (565)
6 KOG0472 Leucine-rich repeat pr 99.9 5E-27 1.1E-31 224.2 -10.5 457 3-526 63-541 (565)
7 KOG0444 Cytoskeletal regulator 99.9 7.3E-26 1.6E-30 227.4 -3.3 361 4-498 3-375 (1255)
8 KOG0618 Serine/threonine phosp 99.9 1.3E-25 2.8E-30 236.3 -1.7 472 13-550 3-488 (1081)
9 KOG0618 Serine/threonine phosp 99.9 2.2E-24 4.8E-29 227.1 -5.2 136 36-178 2-146 (1081)
10 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 3E-28 211.2 -4.9 362 31-552 6-376 (1255)
11 PLN03210 Resistant to P. syrin 99.8 1.5E-18 3.3E-23 205.1 20.3 343 23-451 549-907 (1153)
12 PLN03210 Resistant to P. syrin 99.8 1.3E-17 2.8E-22 197.2 21.4 344 116-524 552-904 (1153)
13 KOG4341 F-box protein containi 99.7 3.3E-17 7.2E-22 158.6 5.0 301 306-713 138-457 (483)
14 KOG4341 F-box protein containi 99.6 9.3E-17 2E-21 155.6 3.1 277 411-716 138-434 (483)
15 cd00116 LRR_RI Leucine-rich re 99.5 3E-14 6.6E-19 146.6 12.4 274 13-317 3-318 (319)
16 KOG4237 Extracellular matrix p 99.5 4.3E-16 9.4E-21 149.7 -4.1 126 10-138 69-204 (498)
17 KOG4237 Extracellular matrix p 99.5 1.5E-15 3.3E-20 146.0 -3.9 93 455-552 267-360 (498)
18 cd00116 LRR_RI Leucine-rich re 99.4 5.1E-13 1.1E-17 137.5 11.8 253 4-287 19-316 (319)
19 PRK15387 E3 ubiquitin-protein 99.4 9.7E-13 2.1E-17 144.5 12.1 253 9-317 202-456 (788)
20 KOG0617 Ras suppressor protein 99.4 5.5E-15 1.2E-19 125.5 -5.5 158 2-167 27-194 (264)
21 PRK15387 E3 ubiquitin-protein 99.4 3.2E-12 6.9E-17 140.5 13.4 114 412-549 343-456 (788)
22 PRK15370 E3 ubiquitin-protein 99.2 3.4E-11 7.4E-16 133.4 9.1 243 9-317 179-426 (754)
23 KOG0617 Ras suppressor protein 99.2 7E-13 1.5E-17 112.9 -4.5 155 348-527 33-187 (264)
24 PRK15370 E3 ubiquitin-protein 99.1 4.4E-10 9.4E-15 124.7 13.4 104 411-527 325-429 (754)
25 KOG1909 Ran GTPase-activating 99.1 1.7E-10 3.6E-15 110.3 7.2 139 409-549 155-309 (382)
26 KOG2120 SCF ubiquitin ligase, 99.1 5.3E-11 1.2E-15 110.8 3.6 246 411-711 136-390 (419)
27 KOG1909 Ran GTPase-activating 99.0 1.7E-10 3.7E-15 110.3 3.6 249 4-317 26-309 (382)
28 KOG2120 SCF ubiquitin ligase, 99.0 8.6E-11 1.9E-15 109.4 0.6 193 11-206 139-350 (419)
29 KOG4658 Apoptotic ATPase [Sign 99.0 9.1E-10 2E-14 124.2 8.0 81 6-86 543-628 (889)
30 KOG3207 Beta-tubulin folding c 99.0 9.3E-11 2E-15 115.1 -0.0 100 7-106 120-232 (505)
31 PF14580 LRR_9: Leucine-rich r 98.9 1E-09 2.2E-14 98.7 5.2 128 7-157 18-149 (175)
32 KOG1259 Nischarin, modulator o 98.9 1.8E-09 3.8E-14 100.9 4.7 131 409-551 282-412 (490)
33 KOG3207 Beta-tubulin folding c 98.8 2.1E-09 4.5E-14 105.9 4.5 90 457-549 141-233 (505)
34 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.2E-14 95.0 4.9 131 409-548 17-150 (175)
35 KOG1947 Leucine rich repeat pr 98.7 1.5E-08 3.3E-13 110.9 7.2 250 410-706 187-451 (482)
36 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 74.5 3.1 61 8-68 1-61 (61)
37 KOG4658 Apoptotic ATPase [Sign 98.6 6.6E-08 1.4E-12 109.4 8.4 248 55-322 522-786 (889)
38 KOG1947 Leucine rich repeat pr 98.6 5.4E-08 1.2E-12 106.5 6.7 257 411-714 161-433 (482)
39 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5E-13 93.5 0.7 124 6-133 282-410 (490)
40 COG4886 Leucine-rich repeat (L 98.4 3.6E-07 7.8E-12 96.8 6.8 189 12-211 97-294 (394)
41 KOG2982 Uncharacterized conser 98.3 5.6E-07 1.2E-11 84.5 5.3 84 6-89 69-159 (418)
42 COG4886 Leucine-rich repeat (L 98.3 3.8E-07 8.3E-12 96.6 3.6 176 4-189 112-296 (394)
43 KOG0532 Leucine-rich repeat (L 98.2 3.8E-08 8.1E-13 100.3 -5.2 166 9-184 76-248 (722)
44 KOG2982 Uncharacterized conser 98.2 2.7E-06 5.9E-11 80.0 6.3 108 438-549 46-157 (418)
45 PF13855 LRR_8: Leucine rich r 98.2 2.3E-06 4.9E-11 62.9 4.5 56 32-87 1-60 (61)
46 PLN03150 hypothetical protein; 98.2 3E-06 6.6E-11 94.1 7.3 106 34-159 420-526 (623)
47 KOG0532 Leucine-rich repeat (L 98.2 1.3E-07 2.7E-12 96.6 -3.3 151 377-549 95-245 (722)
48 KOG1859 Leucine-rich repeat pr 98.1 7.6E-08 1.7E-12 100.7 -5.7 126 412-550 165-291 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.0 1.2E-05 2.5E-10 74.9 7.1 152 6-159 28-225 (388)
50 KOG1859 Leucine-rich repeat pr 97.9 4.8E-07 1E-11 95.0 -4.8 120 9-133 165-290 (1096)
51 KOG3665 ZYG-1-like serine/thre 97.9 2E-05 4.3E-10 87.3 7.3 138 408-549 145-286 (699)
52 PLN03150 hypothetical protein; 97.9 2.5E-05 5.5E-10 86.8 7.9 108 439-552 420-529 (623)
53 KOG3665 ZYG-1-like serine/thre 97.8 3E-05 6.4E-10 85.9 7.2 134 411-549 122-261 (699)
54 KOG0531 Protein phosphatase 1, 97.8 2.9E-06 6.2E-11 90.0 -0.9 122 7-133 71-197 (414)
55 KOG0531 Protein phosphatase 1, 97.7 3.8E-06 8.3E-11 89.0 -1.8 165 3-178 90-264 (414)
56 COG5238 RNA1 Ran GTPase-activa 97.6 0.00011 2.3E-09 68.6 6.2 173 4-178 54-281 (388)
57 PF12799 LRR_4: Leucine Rich r 97.6 6.4E-05 1.4E-09 50.3 3.5 37 8-45 1-37 (44)
58 PF12799 LRR_4: Leucine Rich r 97.5 9.3E-05 2E-09 49.6 3.2 38 462-500 1-38 (44)
59 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.2E-09 64.1 5.2 119 10-133 21-151 (233)
60 KOG1644 U2-associated snRNP A' 97.4 9.3E-05 2E-09 66.1 3.0 96 9-106 43-150 (233)
61 PRK15386 type III secretion pr 97.4 0.00054 1.2E-08 69.8 8.6 58 276-341 50-108 (426)
62 PRK15386 type III secretion pr 97.1 0.0027 5.8E-08 64.9 9.7 64 243-323 48-111 (426)
63 KOG4579 Leucine-rich repeat (L 96.8 0.00026 5.7E-09 59.1 -0.1 104 439-549 29-134 (177)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00047 1E-08 64.6 1.3 115 429-549 35-154 (260)
65 KOG4579 Leucine-rich repeat (L 96.8 0.00023 4.9E-09 59.4 -1.0 97 33-133 28-134 (177)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00068 1.5E-08 63.5 1.6 101 29-132 40-153 (260)
67 KOG2123 Uncharacterized conser 96.6 0.00026 5.6E-09 66.4 -1.9 74 55-128 40-123 (388)
68 KOG2123 Uncharacterized conser 96.6 0.00056 1.2E-08 64.3 0.2 79 411-496 19-99 (388)
69 KOG3864 Uncharacterized conser 96.5 0.0014 3.1E-08 58.8 1.9 94 609-719 119-215 (221)
70 PF13306 LRR_5: Leucine rich r 96.4 0.0061 1.3E-07 52.8 5.5 79 3-84 7-89 (129)
71 KOG3864 Uncharacterized conser 96.3 0.0037 7.9E-08 56.3 3.5 80 77-157 102-185 (221)
72 PF13306 LRR_5: Leucine rich r 95.3 0.016 3.6E-07 50.0 3.5 35 458-493 54-89 (129)
73 smart00367 LRR_CC Leucine-rich 95.0 0.025 5.4E-07 32.8 2.5 24 681-704 1-24 (26)
74 smart00367 LRR_CC Leucine-rich 92.8 0.1 2.2E-06 30.2 2.2 22 656-677 1-23 (26)
75 PF00560 LRR_1: Leucine Rich R 92.7 0.085 1.8E-06 29.1 1.7 19 33-52 1-19 (22)
76 PF00560 LRR_1: Leucine Rich R 92.7 0.076 1.6E-06 29.3 1.5 12 10-21 2-13 (22)
77 PF13504 LRR_7: Leucine rich r 92.2 0.095 2.1E-06 26.8 1.4 15 463-477 2-16 (17)
78 PF13516 LRR_6: Leucine Rich r 89.8 0.24 5.1E-06 28.0 1.6 19 657-675 2-20 (24)
79 PF13516 LRR_6: Leucine Rich r 89.7 0.21 4.6E-06 28.2 1.4 23 7-29 1-23 (24)
80 KOG4308 LRR-containing protein 89.2 0.05 1.1E-06 58.1 -2.7 38 655-693 402-443 (478)
81 KOG4308 LRR-containing protein 86.6 0.18 3.9E-06 53.9 -0.4 88 461-549 203-301 (478)
82 smart00370 LRR Leucine-rich re 83.3 0.92 2E-05 26.1 1.8 21 8-28 2-22 (26)
83 smart00369 LRR_TYP Leucine-ric 83.3 0.92 2E-05 26.1 1.8 21 8-28 2-22 (26)
84 smart00370 LRR Leucine-rich re 81.7 1.3 2.8E-05 25.5 2.0 20 461-480 1-20 (26)
85 smart00369 LRR_TYP Leucine-ric 81.7 1.3 2.8E-05 25.5 2.0 20 461-480 1-20 (26)
86 smart00368 LRR_RI Leucine rich 81.1 1.9 4E-05 25.5 2.5 20 657-676 2-21 (28)
87 smart00368 LRR_RI Leucine rich 75.1 4.7 0.0001 23.7 3.0 24 122-146 2-25 (28)
88 KOG3763 mRNA export factor TAP 74.6 4 8.6E-05 43.3 4.3 81 462-544 218-307 (585)
89 KOG3763 mRNA export factor TAP 70.8 5.7 0.00012 42.2 4.4 34 634-667 216-254 (585)
90 KOG0473 Leucine-rich repeat pr 70.4 0.18 3.8E-06 46.7 -5.7 82 25-107 35-122 (326)
91 KOG0473 Leucine-rich repeat pr 61.7 0.31 6.8E-06 45.2 -5.8 78 53-133 39-122 (326)
92 smart00364 LRR_BAC Leucine-ric 59.7 5 0.00011 23.1 0.9 18 462-479 2-19 (26)
93 smart00365 LRR_SD22 Leucine-ri 58.2 7.1 0.00015 22.6 1.4 13 32-44 2-14 (26)
94 PF07723 LRR_2: Leucine Rich R 42.0 17 0.00037 21.0 1.2 25 684-708 2-26 (26)
95 PF05725 FNIP: FNIP Repeat; I 29.1 61 0.0013 21.4 2.5 15 364-378 29-43 (44)
96 PRK09718 hypothetical protein; 22.9 1.3E+02 0.0027 32.1 4.6 9 308-316 187-195 (512)
97 PRK09718 hypothetical protein; 22.7 1.5E+02 0.0032 31.6 5.0 30 307-337 166-195 (512)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-39 Score=384.57 Aligned_cols=523 Identities=19% Similarity=0.196 Sum_probs=335.6
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCccccccc-ccCCCcEEEccccccee-ee-ccCCCccEEecc
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI-NHDQLRRLEITKCRVMR-VS-IRCPQLEHLSLK 84 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~-~~-~~~~~L~~L~l~ 84 (720)
.+++.|+++++.+++..+.+|..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.. ++ +.+++|++|+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 4688899999888888888899999999999999988777776655 78889999998888753 33 357778888887
Q ss_pred CcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-
Q 005004 85 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP- 159 (720)
Q Consensus 85 ~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~- 159 (720)
+|.+. ..+.++++|++|++++|. +. ..+|..+.++++|++|++++|. +....+..+. .+++|+.|++++|.
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l 224 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNV-LV-GKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELG-QMKSLKWIYLGYNNL 224 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCc-cc-ccCChhhhhCcCCCeeeccCCC-CcCcCChHHc-CcCCccEEECcCCcc
Confidence 77664 456777777777777764 33 2456667777777777777776 5545555555 66777777777665
Q ss_pred --CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcc
Q 005004 160 --NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 237 (720)
Q Consensus 160 --~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~ 237 (720)
.+|..++++++|++|++++ +.+.+..+..+.++++|++|++++|.+.+.+|..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------------------------ 279 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS------------------------ 279 (968)
T ss_pred CCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECcCCeeeccCchh------------------------
Confidence 4555666667777777766 3555555666666666666666666544433321
Q ss_pred cceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCC
Q 005004 238 LSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 317 (720)
Q Consensus 238 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (720)
+.++++|+++++++|.+.+..+..+. .+++|+.|++++ |.+++..+..+ ..+++|+.|++++|.
T Consensus 280 -----l~~l~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~l~~-n~~~~~~~~~~---~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 280 -----IFSLQKLISLDLSDNSLSGEIPELVI-------QLQNLEILHLFS-NNFTGKIPVAL---TSLPRLQVLQLWSNK 343 (968)
T ss_pred -----HhhccCcCEEECcCCeeccCCChhHc-------CCCCCcEEECCC-CccCCcCChhH---hcCCCCCEEECcCCC
Confidence 23344555566665555443222221 235666666665 35555444444 455566666665554
Q ss_pred CCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeee
Q 005004 318 GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLEL 397 (720)
Q Consensus 318 ~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~ 397 (720)
-.. .+|.. +..+++|+.++++.|.++
T Consensus 344 l~~---------------------------------------------~~p~~-----l~~~~~L~~L~Ls~n~l~---- 369 (968)
T PLN00113 344 FSG---------------------------------------------EIPKN-----LGKHNNLTVLDLSTNNLT---- 369 (968)
T ss_pred CcC---------------------------------------------cCChH-----HhCCCCCcEEECCCCeeE----
Confidence 111 12222 345566666677666654
Q ss_pred cCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCC-
Q 005004 398 KGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN- 476 (720)
Q Consensus 398 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 476 (720)
+.+|..+..+++|+.|++++|. +. ..++..+..+++|+.|++++|.+.... +..+..++.|+.|++++|.+.+
T Consensus 370 ---~~~p~~~~~~~~L~~L~l~~n~-l~-~~~p~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 370 ---GEIPEGLCSSGNLFKLILFSNS-LE-GEIPKSLGACRSLRRVRLQDNSFSGEL-PSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred ---eeCChhHhCcCCCCEEECcCCE-ec-ccCCHHHhCCCCCCEEECcCCEeeeEC-ChhHhcCCCCCEEECcCCcccCc
Confidence 5566666667777777777763 32 225555667777888888777765543 4567777788888888887775
Q ss_pred hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCcccccc
Q 005004 477 LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNW 556 (720)
Q Consensus 477 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~ 556 (720)
++..+..+++|+.|++++|. +.+..+.. ...++|+.|++++|++++ .++..+..+++|+.|++++|.....
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~-~~~~~p~~----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~--- 514 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNK-FFGGLPDS----FGSKRLENLDLSRNQFSG-AVPRKLGSLSELMQLKLSENKLSGE--- 514 (968)
T ss_pred cChhhccCCCCcEEECcCce-eeeecCcc----cccccceEEECcCCccCC-ccChhhhhhhccCEEECcCCcceee---
Confidence 34466677788888888776 44332332 235677888888887776 5666677777788888887752211
Q ss_pred cccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcC-CccccCCccEEEcCCCc---ChHHHH
Q 005004 557 GASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIP-PQARCFHLSSLNLSLSA---NLKEVD 632 (720)
Q Consensus 557 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~-~~~~~~~L~~L~l~~~~---~l~~~~ 632 (720)
+| .+..+++|++|+++++. .++...
T Consensus 515 ---------------------------------------------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 515 ---------------------------------------------------IPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred ---------------------------------------------------CChHHcCccCCCEEECCCCcccccCChhH
Confidence 11 14455667777777543 233344
Q ss_pred hhCCCccEEecccccchhhhhh---cCCcccEEEeecccCChhhHHHHHhcCCCcceEeccCCcCCCc
Q 005004 633 VACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICS 697 (720)
Q Consensus 633 ~~~~~L~~L~l~~~~~L~~l~~---~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 697 (720)
..+++|+.|++++|.....++. .+++|+.|++++|++. ..+|. ...+..+....+.+|+.++.
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-~~~p~-~~~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH-GSLPS-TGAFLAINASAVAGNIDLCG 609 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce-eeCCC-cchhcccChhhhcCCccccC
Confidence 5678888899988875544443 3577888899988875 34443 13334555566677766554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7e-38 Score=369.41 Aligned_cols=485 Identities=21% Similarity=0.199 Sum_probs=372.8
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhh-cCCCCcEEEeCCCccCCcccccccccCCCcEEEccccccee-ee---ccCC
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VS---IRCP 76 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~---~~~~ 76 (720)
++|..+++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|++++|.+.. ++ ++++
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 3578899999999999999987777655 999999999999999877775 458999999999999863 33 4699
Q ss_pred CccEEeccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccce
Q 005004 77 QLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRI 152 (720)
Q Consensus 77 ~L~~L~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 152 (720)
+|++|++++|.+. ..+.++++|++|++++|. ++ ..+|..++.+++|++|++++|. +.+..+..+. .+++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~ 240 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LV-GQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIG-GLTSLNH 240 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCC-Cc-CcCChHHcCcCCccEEECcCCc-cCCcCChhHh-cCCCCCE
Confidence 9999999999875 678999999999999986 44 3568889999999999999997 6667777777 8999999
Q ss_pred eeccCCC---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccc
Q 005004 153 LNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFA 229 (720)
Q Consensus 153 L~l~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~ 229 (720)
|++++|. .+|..++++++|+.|++++ +.+.+..+..+..+++|++|++++|...+.+|..+..+. +|+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--------~L~ 311 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQ-NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ--------NLE 311 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcC-CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC--------CCc
Confidence 9999986 6788899999999999999 478878888899999999999999988777765433222 222
Q ss_pred cchhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCC
Q 005004 230 DLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 306 (720)
Q Consensus 230 ~~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 306 (720)
.+++.++.+... .+..+++|+.+++++|.+++..+..+. .+++|+.|++++ |.+.+..+..+ ...+
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-------~~~~L~~L~Ls~-n~l~~~~p~~~---~~~~ 380 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-------KHNNLTVLDLST-NNLTGEIPEGL---CSSG 380 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-------CCCCCcEEECCC-CeeEeeCChhH---hCcC
Confidence 233333333322 466778888888888888765433322 347888888888 57777666665 5677
Q ss_pred CccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccc
Q 005004 307 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 386 (720)
Q Consensus 307 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~ 386 (720)
+|+.|++++|.-...++ .....+++|+.+++++|.-.. ..|.. +.+++.|+.++
T Consensus 381 ~L~~L~l~~n~l~~~~p------------------~~~~~~~~L~~L~L~~n~l~~---~~p~~-----~~~l~~L~~L~ 434 (968)
T PLN00113 381 NLFKLILFSNSLEGEIP------------------KSLGACRSLRRVRLQDNSFSG---ELPSE-----FTKLPLVYFLD 434 (968)
T ss_pred CCCEEECcCCEecccCC------------------HHHhCCCCCCEEECcCCEeee---ECChh-----HhcCCCCCEEE
Confidence 88888888875222221 111245677778777765322 23443 56778888888
Q ss_pred cccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCe
Q 005004 387 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 466 (720)
Q Consensus 387 l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 466 (720)
+++|.++ +.++..+..+++|+.|++++|.. .. .++.. ...++|+.|++++|.+.... +..+..+++|+.
T Consensus 435 Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~~-~~-~~p~~-~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~ 503 (968)
T PLN00113 435 ISNNNLQ-------GRINSRKWDMPSLQMLSLARNKF-FG-GLPDS-FGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQ 503 (968)
T ss_pred CcCCccc-------CccChhhccCCCCcEEECcCcee-ee-ecCcc-cccccceEEECcCCccCCcc-ChhhhhhhccCE
Confidence 8888875 66676677888999999998843 22 23332 24578999999998876554 567788899999
Q ss_pred eecCCcccCC-hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEec
Q 005004 467 LDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 545 (720)
Q Consensus 467 L~l~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l 545 (720)
|++++|.+.+ +|..+..+++|+.|++++|. +++..+..+ ..+++|+.|++++|++++ .+|..+..+++|+.+++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~---~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPASF---SEMPVLSQLDLSQNQLSG-EIPKNLGNVESLVQVNI 578 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCc-ccccCChhH---hCcccCCEEECCCCcccc-cCChhHhcCcccCEEec
Confidence 9999998885 67788889999999999887 776666666 678899999999999887 67788888899999999
Q ss_pred cCccCcccc
Q 005004 546 NGCGNMHDL 554 (720)
Q Consensus 546 ~~~~~l~~~ 554 (720)
++|+....+
T Consensus 579 s~N~l~~~~ 587 (968)
T PLN00113 579 SHNHLHGSL 587 (968)
T ss_pred cCCcceeeC
Confidence 998755433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=8e-28 Score=239.82 Aligned_cols=381 Identities=17% Similarity=0.209 Sum_probs=236.2
Q ss_pred CeeecCCCCCchhhHHhhhcCC--CCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCccEEeccC
Q 005004 11 EALTLGRGQLGDAFFHALADCS--MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKR 85 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~~L~l~~ 85 (720)
+.||.+++.+..+....+.++. .-++|++++|.+...-+.-+.++++|+.+++..|.+..+|. ....|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 3566666666554444444322 23457777777765555556777777777777777776662 244477777777
Q ss_pred cchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCCC
Q 005004 86 SNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN 160 (720)
Q Consensus 86 ~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 160 (720)
|.|. +.++-++.||.|||+.|. ++ .+| ..+.+-.++++|+|++|. |++.....+. .+.+|..|.|+.|
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~-is--~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~-~lnsL~tlkLsrN-- 207 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNL-IS--EIPKPSFPAKVNIKKLNLASNR-ITTLETGHFD-SLNSLLTLKLSRN-- 207 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhch-hh--cccCCCCCCCCCceEEeecccc-cccccccccc-ccchheeeecccC--
Confidence 7665 677788888888888874 55 344 334445778888888887 7665555555 5555555555554
Q ss_pred CccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccce
Q 005004 161 ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSS 240 (720)
Q Consensus 161 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~ 240 (720)
.++...+..|.++++|+.|++..|.+-- .+.+
T Consensus 208 --------------------rittLp~r~Fk~L~~L~~LdLnrN~iri--------ve~l-------------------- 239 (873)
T KOG4194|consen 208 --------------------RITTLPQRSFKRLPKLESLDLNRNRIRI--------VEGL-------------------- 239 (873)
T ss_pred --------------------cccccCHHHhhhcchhhhhhccccceee--------ehhh--------------------
Confidence 5555555555556666666665542110 0011
Q ss_pred eeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCc
Q 005004 241 IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLT 320 (720)
Q Consensus 241 l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 320 (720)
.|.++++|+.+.+..|+++......+- .+.+++.|++.. |+++.....++ .++..|+.|+++.|.
T Consensus 240 -tFqgL~Sl~nlklqrN~I~kL~DG~Fy-------~l~kme~l~L~~-N~l~~vn~g~l---fgLt~L~~L~lS~Na--- 304 (873)
T KOG4194|consen 240 -TFQGLPSLQNLKLQRNDISKLDDGAFY-------GLEKMEHLNLET-NRLQAVNEGWL---FGLTSLEQLDLSYNA--- 304 (873)
T ss_pred -hhcCchhhhhhhhhhcCcccccCccee-------eecccceeeccc-chhhhhhcccc---cccchhhhhccchhh---
Confidence 244445555555555555443222211 235566666665 45554443444 456666666666653
Q ss_pred eeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCc
Q 005004 321 VVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 400 (720)
Q Consensus 321 ~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~ 400 (720)
++.+.++. ++.|++|+.+++++|+++.++
T Consensus 305 -----------------------------I~rih~d~------------------WsftqkL~~LdLs~N~i~~l~---- 333 (873)
T KOG4194|consen 305 -----------------------------IQRIHIDS------------------WSFTQKLKELDLSSNRITRLD---- 333 (873)
T ss_pred -----------------------------hheeecch------------------hhhcccceeEeccccccccCC----
Confidence 22222222 566777777777777773221
Q ss_pred ccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCC--chhhHHhhcCCCCCeeecCCcccCChh
Q 005004 401 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG--PDGLYSLRSLQNLTMLDLSYTFLTNLE 478 (720)
Q Consensus 401 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~ 478 (720)
++++..+..|+.|+|+.| .+.. .-...|.++.+|++|++++|.+.. +++...|..+++|+.|++.+|++..++
T Consensus 334 ---~~sf~~L~~Le~LnLs~N-si~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 334 ---EGSFRVLSQLEELNLSHN-SIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred ---hhHHHHHHHhhhhccccc-chHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 335566778888888887 3332 123446778888888888887654 223456777888999999999888887
Q ss_pred H-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCC
Q 005004 479 P-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 522 (720)
Q Consensus 479 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~ 522 (720)
. +|.+++.|++|++.+|. +..+.+.+| ..+ .|++|.+..
T Consensus 409 krAfsgl~~LE~LdL~~Na-iaSIq~nAF---e~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNA-IASIQPNAF---EPM-ELKELVMNS 448 (873)
T ss_pred hhhhccCcccceecCCCCc-ceeeccccc---ccc-hhhhhhhcc
Confidence 7 88888999999998877 766666665 555 777777664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-26 Score=231.19 Aligned_cols=363 Identities=18% Similarity=0.169 Sum_probs=236.7
Q ss_pred CEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEecc
Q 005004 125 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 202 (720)
Q Consensus 125 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 202 (720)
+.|++++|. +.+..+..+. ++++|+++++.+|. .+|...+...+++.|++.+ +.++...-+++.-++.|++||++
T Consensus 81 ~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccc-cccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhh
Confidence 345555554 4444444444 55555555555554 4555555556677777776 57777777777777777788777
Q ss_pred CCccccccccccccccceecccccccccchhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCC
Q 005004 203 NCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQC 279 (720)
Q Consensus 203 ~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~ 279 (720)
.|.+...--..|| .-.+++++++.++.++.+ .|..+.+|..+.++.|.++......+.. +++
T Consensus 158 rN~is~i~~~sfp--------~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~-------L~~ 222 (873)
T KOG4194|consen 158 RNLISEIPKPSFP--------AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR-------LPK 222 (873)
T ss_pred hchhhcccCCCCC--------CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhh-------cch
Confidence 7654332111222 112233344555555544 4666667777777777776654443333 367
Q ss_pred ceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCC
Q 005004 280 LQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCD 359 (720)
Q Consensus 280 L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~ 359 (720)
|+.|++.. |.+.-.-...| .++++|+.|.+..|. +..+ ..- .+.++.+++++++..+.
T Consensus 223 L~~LdLnr-N~irive~ltF---qgL~Sl~nlklqrN~-I~kL-------~DG----------~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 223 LESLDLNR-NRIRIVEGLTF---QGLPSLQNLKLQRND-ISKL-------DDG----------AFYGLEKMEHLNLETNR 280 (873)
T ss_pred hhhhhccc-cceeeehhhhh---cCchhhhhhhhhhcC-cccc-------cCc----------ceeeecccceeecccch
Confidence 77777766 56654433344 667777777776664 2111 111 12244555555555432
Q ss_pred ccccccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCc
Q 005004 360 HIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLI 439 (720)
Q Consensus 360 ~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 439 (720)
-. ++.+=.+.+++.|+.+++++|.++.+. ++.++.+++|++|+|++| .++.. -+..+..+..|
T Consensus 281 l~--------~vn~g~lfgLt~L~~L~lS~NaI~rih-------~d~WsftqkL~~LdLs~N-~i~~l-~~~sf~~L~~L 343 (873)
T KOG4194|consen 281 LQ--------AVNEGWLFGLTSLEQLDLSYNAIQRIH-------IDSWSFTQKLKELDLSSN-RITRL-DEGSFRVLSQL 343 (873)
T ss_pred hh--------hhhcccccccchhhhhccchhhhheee-------cchhhhcccceeEecccc-ccccC-ChhHHHHHHHh
Confidence 11 111113677889999999999986443 445678899999999998 56542 33457778899
Q ss_pred cEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCC-h---hHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCc
Q 005004 440 ESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-L---EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 515 (720)
Q Consensus 440 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 515 (720)
++|+++.|.+.... ...|..+.+|++||++.|.++. + ...|.++++|++|.+.+|+ ++.+...++ ..+++|
T Consensus 344 e~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAf---sgl~~L 418 (873)
T KOG4194|consen 344 EELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAF---SGLEAL 418 (873)
T ss_pred hhhcccccchHHHH-hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhh---ccCccc
Confidence 99999999876543 4678889999999999998874 2 2268889999999999988 888877776 789999
Q ss_pred ceeecCCCccchHHHHHHHhhCCCCcEEeccCccCc
Q 005004 516 QELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 551 (720)
Q Consensus 516 ~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l 551 (720)
+.|++++|.|-. +.+..|..+ .|++|.+..-..+
T Consensus 419 E~LdL~~NaiaS-Iq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 419 EHLDLGDNAIAS-IQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred ceecCCCCccee-ecccccccc-hhhhhhhcccceE
Confidence 999999999877 566777776 8999988764444
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=4.4e-28 Score=231.25 Aligned_cols=458 Identities=16% Similarity=0.180 Sum_probs=252.2
Q ss_pred CCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee---ccCCCccEEeccCc
Q 005004 10 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSLKRS 86 (720)
Q Consensus 10 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~ 86 (720)
++.|++++|.+. ...+++.++.-|.+|++.+|.+ ..+|++++.+.+++.|+.++|.+..+| ....+|..++.++|
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKL-SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchh-hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 344455555443 2233444555555555555554 334444555555555555555554444 23444444444444
Q ss_pred chH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CC
Q 005004 87 NMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NI 161 (720)
Q Consensus 87 ~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~ 161 (720)
++. ..++.+..|+.++..+|+ ++ .+|+.+.++.++..+++.+|. +. ..+.+.. +++.|++|+...|- .+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~-i~--slp~~~~~~~~l~~l~~~~n~-l~-~l~~~~i-~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQ-IS--SLPEDMVNLSKLSKLDLEGNK-LK-ALPENHI-AMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccc-cc--cCchHHHHHHHHHHhhccccc-hh-hCCHHHH-HHHHHHhcccchhhhhcC
Confidence 443 344444444444444443 22 344444444444444444443 22 2222222 24444444444443 44
Q ss_pred ccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhccccee
Q 005004 162 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 241 (720)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l 241 (720)
|+.++.+.+|..|++++ +++.... +|.. |..+.++++..+.++.+
T Consensus 199 P~~lg~l~~L~~LyL~~-Nki~~lP--ef~g--------------------------------cs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRR-NKIRFLP--EFPG--------------------------------CSLLKELHVGENQIEML 243 (565)
T ss_pred ChhhcchhhhHHHHhhh-cccccCC--CCCc--------------------------------cHHHHHHHhcccHHHhh
Confidence 44444444444444444 2332211 3333 33344444444444333
Q ss_pred ---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCC
Q 005004 242 ---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEG 318 (720)
Q Consensus 242 ---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (720)
..++++.+..+++.+|++..+....+ -+.+|++||+++ |.+++.. ..+ +++ +|++|.+.++.
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde~c--------lLrsL~rLDlSN-N~is~Lp-~sL---gnl-hL~~L~leGNP- 308 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDEIC--------LLRSLERLDLSN-NDISSLP-YSL---GNL-HLKFLALEGNP- 308 (565)
T ss_pred HHHHhcccccceeeeccccccccCchHHH--------HhhhhhhhcccC-CccccCC-ccc---ccc-eeeehhhcCCc-
Confidence 34566777788888887766432211 126788888887 6776543 222 566 78888888775
Q ss_pred Cceecc----cc--------------CCce---eEeecCCCccccccc---cCCcccEEeccCCCcccccccccccccee
Q 005004 319 LTVVRF----CS--------------TSLV---SLSLVGCRAITALEL---KCPILEKVCLDGCDHIESASFVPVALQSL 374 (720)
Q Consensus 319 l~~~~~----~~--------------~~l~---~l~l~~~~~l~~l~~---~~~~L~~l~l~~~~~l~~~~~~p~~L~~L 374 (720)
+..+.- .. .++. .-.....+.-..... ..-+.+.+++++-. ...+|..+ +
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q----lt~VPdEV--f 382 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ----LTLVPDEV--F 382 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc----cccCCHHH--H
Confidence 332210 00 0000 000000000000000 11223333333311 11223211 0
Q ss_pred ccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEE-eccCCCCCcchhhhhhhccCCCccEEeecCCCCCCch
Q 005004 375 NLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSL-DASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD 453 (720)
Q Consensus 375 ~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 453 (720)
+...-.-.+.++++.|++ .++|..+..++.+... .+++| .+ ..++..+..+++|..|++++|..-..
T Consensus 383 ea~~~~~Vt~VnfskNqL--------~elPk~L~~lkelvT~l~lsnn-~i--sfv~~~l~~l~kLt~L~L~NN~Ln~L- 450 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQL--------CELPKRLVELKELVTDLVLSNN-KI--SFVPLELSQLQKLTFLDLSNNLLNDL- 450 (565)
T ss_pred HHhhhcceEEEecccchH--------hhhhhhhHHHHHHHHHHHhhcC-cc--ccchHHHHhhhcceeeecccchhhhc-
Confidence 011111245667777776 6677766666655544 44443 33 33667788999999999999876554
Q ss_pred hhHHhhcCCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHH
Q 005004 454 GLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 533 (720)
Q Consensus 454 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~ 533 (720)
+..++.+..|+.|+++.|+|..+|........++.+-.++|+ +..+.+..+ .++.+|..||+.+|.+. .+|..
T Consensus 451 -P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l---~nm~nL~tLDL~nNdlq--~IPp~ 523 (565)
T KOG0472|consen 451 -PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGL---KNMRNLTTLDLQNNDLQ--QIPPI 523 (565)
T ss_pred -chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHh---hhhhhcceeccCCCchh--hCChh
Confidence 677888888999999999999999988888888888777766 888777755 78999999999999996 58889
Q ss_pred HhhCCCCcEEeccCccC
Q 005004 534 LAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 534 l~~~~~L~~L~l~~~~~ 550 (720)
++++++|++|++.||+.
T Consensus 524 LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPF 540 (565)
T ss_pred hccccceeEEEecCCcc
Confidence 99999999999999984
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=5e-27 Score=224.15 Aligned_cols=457 Identities=22% Similarity=0.209 Sum_probs=254.9
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee---ccCCCcc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLE 79 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~L~ 79 (720)
.+..+..+++|++++|..+ ..|.+++.+..+..++.++|.+ ..+|+.++.+..|+.|+.++|.+..++ +.+..|+
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 3456677778888888775 4566777777777788887777 567777777777788888877777666 3467777
Q ss_pred EEeccCcchH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeecc
Q 005004 80 HLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 156 (720)
Q Consensus 80 ~L~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 156 (720)
.++..+|++. +.+..+.+|..+++.+|. ++ .+|+..-+++.|++|+.-.|. + ...|++++ .+.+|+-|++.
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~--~l~~~~i~m~~L~~ld~~~N~-L-~tlP~~lg-~l~~L~~LyL~ 214 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LK--ALPENHIAMKRLKHLDCNSNL-L-ETLPPELG-GLESLELLYLR 214 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccc-hh--hCCHHHHHHHHHHhcccchhh-h-hcCChhhc-chhhhHHHHhh
Confidence 7777777666 566666777777777764 44 344444446677777766654 2 35666666 66777777777
Q ss_pred CCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhh
Q 005004 157 YCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLR 234 (720)
Q Consensus 157 ~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~ 234 (720)
.|. .+| +++.|..|.++++.. +.+.....+....+.++.+||+.+|+. .+.|..+..|+.+ ..++++
T Consensus 215 ~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL--------~rLDlS 283 (565)
T KOG0472|consen 215 RNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSL--------ERLDLS 283 (565)
T ss_pred hcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhh--------hhhccc
Confidence 766 444 666666677776665 344444334444666777777766653 3334333322222 223444
Q ss_pred hccccee--eccCCCcccEEEeccCccccccc---ccc--hhhHHHHhhCCCceEEecCCC--cccch--hhhhhhcCCC
Q 005004 235 AMMLSSI--MVSNCAALHRINITSNSLQKLSL---QKQ--ENLTSLALQCQCLQEVDLTDC--ESLTN--SVCEVFSDGG 303 (720)
Q Consensus 235 ~~~l~~l--~~~~~~~L~~l~l~~~~~~~~~~---~~~--~~l~~l~~~~~~L~~L~l~~c--~~l~~--~~~~~~~~~~ 303 (720)
.+.++.+ .++++ .|+.+.+.+|.+....- .+. +-+..+.. ..+.=.++.- ...+. .....+++..
T Consensus 284 NN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 284 NNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred CCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCCCcccccccCCCCCCcccchh
Confidence 4545544 45555 66666666665543310 000 00100100 0000001100 00000 0112222233
Q ss_pred CCCCccEEEeccCCCCceeccc-cCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCC-
Q 005004 304 GCPMLKSLVLDNCEGLTVVRFC-STSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPK- 381 (720)
Q Consensus 304 ~~~~L~~L~l~~~~~l~~~~~~-~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~- 381 (720)
...+.+.|++++-+ ++.+|.. +..- .-.-...++++++. ...+|..+. .+..
T Consensus 360 ~~i~tkiL~~s~~q-lt~VPdEVfea~----------------~~~~Vt~VnfskNq----L~elPk~L~-----~lkel 413 (565)
T KOG0472|consen 360 AIITTKILDVSDKQ-LTLVPDEVFEAA----------------KSEIVTSVNFSKNQ----LCELPKRLV-----ELKEL 413 (565)
T ss_pred hhhhhhhhcccccc-cccCCHHHHHHh----------------hhcceEEEecccch----HhhhhhhhH-----HHHHH
Confidence 44455666665543 4433310 0000 00001122222211 111233211 1111
Q ss_pred CcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcC
Q 005004 382 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 461 (720)
Q Consensus 382 L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 461 (720)
.+.+.++.|.+ +.+|..++.+++|..|++++| .+.+ +|..+..+..||.++++.|.+... +.++...
T Consensus 414 vT~l~lsnn~i--------sfv~~~l~~l~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~l--P~~~y~l 480 (565)
T KOG0472|consen 414 VTDLVLSNNKI--------SFVPLELSQLQKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFNRFRML--PECLYEL 480 (565)
T ss_pred HHHHHhhcCcc--------ccchHHHHhhhcceeeecccc-hhhh--cchhhhhhhhhheecccccccccc--hHHHhhH
Confidence 23445555554 555666777788888888876 4554 566666777788888887765544 4555566
Q ss_pred CCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccc
Q 005004 462 QNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 526 (720)
Q Consensus 462 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~ 526 (720)
..++.+-.++|++..+++ .+..+.+|..|++.+|. +..+ |..+ ++|++|++|++++|.+.
T Consensus 481 q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~I-Pp~L---gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 481 QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQI-PPIL---GNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhC-Chhh---ccccceeEEEecCCccC
Confidence 666666677777777666 47777888888887766 5544 3333 77888888888887775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=7.3e-26 Score=227.42 Aligned_cols=361 Identities=19% Similarity=0.220 Sum_probs=249.6
Q ss_pred ccccCcCCeeecCCCCCc-hhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCcc
Q 005004 4 VSLLRNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLE 79 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~ 79 (720)
.+-++=+|-+|+++|.++ +.+|.....|+.++.|.|....+ ..+|+-++.+.+|++|.+.+|++..+-+ .++.|+
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 456777889999999998 56899999999999999999888 6789889999999999999999887653 567777
Q ss_pred EEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceee
Q 005004 80 HLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILN 154 (720)
Q Consensus 80 ~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 154 (720)
.++++.|++. ..+.++..|..|++++|. ++ ..|..+...+++-+|++++|. |. .+|..++.+++.|-.|+
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~--EvP~~LE~AKn~iVLNLS~N~-Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LR--EVPTNLEYAKNSIVLNLSYNN-IE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hh--hcchhhhhhcCcEEEEcccCc-cc-cCCchHHHhhHhHhhhc
Confidence 7777777665 566778888888888874 55 567778888888888888886 43 55666655777777888
Q ss_pred ccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc-ccccccccccceecccccccccc
Q 005004 155 SSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-SVSLELPRLQNIRLVHCRKFADL 231 (720)
Q Consensus 155 l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~L~~l~~~~~~~l~~~ 231 (720)
+++|. .+|+.+-.+.+|+.|++++ +.+.......+..+++|++|.+++.+.+- .+|
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P-------------------- 215 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP-------------------- 215 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhhcCC--------------------
Confidence 87776 6666666666677777766 35544444444444555555554432211 001
Q ss_pred hhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEE
Q 005004 232 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 311 (720)
Q Consensus 232 ~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L 311 (720)
.. +. .+.+|..+|++. |++.....+. ..+++|+.|
T Consensus 216 ---------------------------------ts---ld----~l~NL~dvDlS~-N~Lp~vPecl----y~l~~LrrL 250 (1255)
T KOG0444|consen 216 ---------------------------------TS---LD----DLHNLRDVDLSE-NNLPIVPECL----YKLRNLRRL 250 (1255)
T ss_pred ---------------------------------Cc---hh----hhhhhhhccccc-cCCCcchHHH----hhhhhhhee
Confidence 01 11 125677777776 5665443333 467788888
Q ss_pred EeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccce
Q 005004 312 VLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALH 391 (720)
Q Consensus 312 ~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~ 391 (720)
.++++. ++++.. .+....+|..++++.|+
T Consensus 251 NLS~N~-iteL~~--------------------------------------------------~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 251 NLSGNK-ITELNM--------------------------------------------------TEGEWENLETLNLSRNQ 279 (1255)
T ss_pred ccCcCc-eeeeec--------------------------------------------------cHHHHhhhhhhccccch
Confidence 888775 332210 12334456666777777
Q ss_pred eeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCC
Q 005004 392 MVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY 471 (720)
Q Consensus 392 l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 471 (720)
+ ..+|+.+.++++|+.|.+.+| .++-+++|+.+..+..|+++..++|.+.-. ++.+..|..|+.|.++.
T Consensus 280 L--------t~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LElV--PEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 280 L--------TVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLELV--PEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred h--------ccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccccC--chhhhhhHHHHHhcccc
Confidence 6 667777777777777777776 566666777777777777777777654322 56677777777777777
Q ss_pred cccCChhHHHhccccccEEEcCCCCCC
Q 005004 472 TFLTNLEPVFESCLQLKVLKLQACKYL 498 (720)
Q Consensus 472 ~~~~~l~~~~~~~~~L~~L~l~~~~~l 498 (720)
|++..+|++++-++-|+.|++..|+.+
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCCcCc
Confidence 777777777777777777777777644
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-25 Score=236.28 Aligned_cols=472 Identities=21% Similarity=0.231 Sum_probs=297.0
Q ss_pred eecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCccEEeccCcchH
Q 005004 13 LTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMA 89 (720)
Q Consensus 13 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~~L~l~~~~~~ 89 (720)
+|++.+++. .+|..+.+-..+.+|++++|.+...--+.+...-+|+.|++++|++..+|. .++.|+.|+++.|.+.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 566766665 345444444448888888886643222233445558888888888888774 3677888888888776
Q ss_pred ---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCCCCccccc
Q 005004 90 ---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV 166 (720)
Q Consensus 90 ---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 166 (720)
....++.+|+++.|.+|. +. .+|..+..+++|++|+++.|.+ ...|.-+. .+..++.+..++|. ....++
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~-l~--~lP~~~~~lknl~~LdlS~N~f--~~~Pl~i~-~lt~~~~~~~s~N~-~~~~lg 154 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNR-LQ--SLPASISELKNLQYLDLSFNHF--GPIPLVIE-VLTAEEELAASNNE-KIQRLG 154 (1081)
T ss_pred hCchhhhhhhcchhheeccch-hh--cCchhHHhhhcccccccchhcc--CCCchhHH-hhhHHHHHhhhcch-hhhhhc
Confidence 677888999999998874 44 6788899999999999999874 23344443 66777777777772 112222
Q ss_pred cCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCC
Q 005004 167 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 246 (720)
Q Consensus 167 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~ 246 (720)
... ++.+++.. +.+.+..+..+..+.+ .+++.+|... .+++..+.+++.+....+.+..+.+.+
T Consensus 155 ~~~-ik~~~l~~-n~l~~~~~~~i~~l~~--~ldLr~N~~~-----------~~dls~~~~l~~l~c~rn~ls~l~~~g- 218 (1081)
T KOG0618|consen 155 QTS-IKKLDLRL-NVLGGSFLIDIYNLTH--QLDLRYNEME-----------VLDLSNLANLEVLHCERNQLSELEISG- 218 (1081)
T ss_pred ccc-chhhhhhh-hhcccchhcchhhhhe--eeecccchhh-----------hhhhhhccchhhhhhhhcccceEEecC-
Confidence 222 66666666 4666666666666555 5777776543 223333333333333333333332222
Q ss_pred CcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceecc--
Q 005004 247 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-- 324 (720)
Q Consensus 247 ~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-- 324 (720)
++++.+....|.++...... .-.+++++++++ +.+.+.. .+. ..+++|+.+.+.++. +..++.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p---------~p~nl~~~dis~-n~l~~lp-~wi---~~~~nle~l~~n~N~-l~~lp~ri 283 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP---------VPLNLQYLDISH-NNLSNLP-EWI---GACANLEALNANHNR-LVALPLRI 283 (1081)
T ss_pred cchheeeeccCcceeecccc---------ccccceeeecch-hhhhcch-HHH---HhcccceEecccchh-HHhhHHHH
Confidence 35555555555554221110 114666677766 5555544 444 566666666666654 343332
Q ss_pred -ccCCceeEeecCCCcccccc---ccCCcccEEeccCCCccccccccccccceeccCCCC-CCcccccccceeeeeeecC
Q 005004 325 -CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICP-KLSTLGIEALHMVVLELKG 399 (720)
Q Consensus 325 -~~~~l~~l~l~~~~~l~~l~---~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~-~L~~l~l~~~~l~~l~~~~ 399 (720)
...+++.+.+..+ .+..++ .....|++|++..+. .+.+|... +.-.. .++.+..+.+.++
T Consensus 284 ~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~----L~~lp~~~----l~v~~~~l~~ln~s~n~l~------ 348 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN----LPSLPDNF----LAVLNASLNTLNVSSNKLS------ 348 (1081)
T ss_pred hhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc----ccccchHH----HhhhhHHHHHHhhhhcccc------
Confidence 1122222222221 122222 235666667666643 11223210 11111 1334444444442
Q ss_pred cccccc-cccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChh
Q 005004 400 CGVLSD-AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE 478 (720)
Q Consensus 400 ~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 478 (720)
..|. .-..++.|+.|.+.+| .+++..+|. +.++++|+.|++++|.+.+.. ...+.+++.|++|++++|+++.+|
T Consensus 349 --~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 349 --TLPSYEENNHAALQELYLANN-HLTDSCFPV-LVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred --ccccccchhhHHHHHHHHhcC-cccccchhh-hccccceeeeeecccccccCC-HHHHhchHHhHHHhcccchhhhhh
Confidence 1221 1124678999999998 788877765 678899999999999877654 567889999999999999999999
Q ss_pred HHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccC
Q 005004 479 PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 479 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~ 550 (720)
...-.|..|+.|...+|. +..+ | .+ ..++.|+.+|++.|+++...++.... .++|++||++||..
T Consensus 424 ~tva~~~~L~tL~ahsN~-l~~f-P-e~---~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQ-LLSF-P-EL---AQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHHhhhhhHHHhhcCCc-eeec-h-hh---hhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 999999999999999887 5443 3 33 68999999999999998755555432 38999999999974
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-24 Score=227.11 Aligned_cols=136 Identities=17% Similarity=0.240 Sum_probs=86.4
Q ss_pred EEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCcchH---HHHhcCCCceEEeeccccC
Q 005004 36 SLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHK 108 (720)
Q Consensus 36 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~---~~~~~l~~L~~L~l~~~~~ 108 (720)
++|.+++++ ..||..+..-..++.|++..|.+...| .++-+|+.||+++|.+. ..+..+++|+.|+++.|.
T Consensus 2 ~vd~s~~~l-~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~- 79 (1081)
T KOG0618|consen 2 HVDASDEQL-ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY- 79 (1081)
T ss_pred CcccccccC-cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-
Confidence 467777777 456666666666888888888776533 23444777777777655 455556677777777664
Q ss_pred cchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccccCCcCcEEeccC
Q 005004 109 LSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHS 178 (720)
Q Consensus 109 l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~ 178 (720)
+. ..|....++.+|++++|.+|. + ...|..+. .+.+|++|++++|. .+|..+..+..+..+..++
T Consensus 80 i~--~vp~s~~~~~~l~~lnL~~n~-l-~~lP~~~~-~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 80 IR--SVPSSCSNMRNLQYLNLKNNR-L-QSLPASIS-ELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred Hh--hCchhhhhhhcchhheeccch-h-hcCchhHH-hhhcccccccchhccCCCchhHHhhhHHHHHhhhc
Confidence 33 456666777777777777664 2 24455555 66777777777765 4555555555555555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-23 Score=211.21 Aligned_cols=362 Identities=19% Similarity=0.220 Sum_probs=193.6
Q ss_pred CCCCcEEEeCCCccC-CcccccccccCCCcEEEcccccceeee---ccCCCccEEeccCcchH---HHHhcCCCceEEee
Q 005004 31 CSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSLKRSNMA---QAVLNCPLLHLLDI 103 (720)
Q Consensus 31 ~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~~~---~~~~~l~~L~~L~l 103 (720)
++-.|-+|+++|.+. +..|..+..+++++.|.+....+..+| +.+.+|++|.+++|++. ..+..++.||.+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 445567889999887 467888888888888888887777766 34666666666666665 34445556666666
Q ss_pred ccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCCCCccccccCCcCcEEeccCCCCCc
Q 005004 104 ASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGIT 183 (720)
Q Consensus 104 ~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 183 (720)
..|+ +...++|..+..+..|..|++++|. +. ..|..+. ...++-.|++++|. +.
T Consensus 86 R~N~-LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE-~AKn~iVLNLS~N~----------------------Ie 139 (1255)
T KOG0444|consen 86 RDNN-LKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLE-YAKNSIVLNLSYNN----------------------IE 139 (1255)
T ss_pred hccc-cccCCCCchhcccccceeeecchhh-hh-hcchhhh-hhcCcEEEEcccCc----------------------cc
Confidence 6654 5555666666666666666666665 32 3333333 33444444444443 22
Q ss_pred hhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccc
Q 005004 184 SASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS 263 (720)
Q Consensus 184 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~ 263 (720)
.+...-+.+++.|-.||+++|. +..+|+.+ ..+
T Consensus 140 tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~-----------------------------RRL----------------- 172 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNR-LEMLPPQI-----------------------------RRL----------------- 172 (1255)
T ss_pred cCCchHHHhhHhHhhhccccch-hhhcCHHH-----------------------------HHH-----------------
Confidence 2222222233333333333331 11111111 111
Q ss_pred cccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccc
Q 005004 264 LQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITAL 343 (720)
Q Consensus 264 ~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l 343 (720)
..|+.|++++ |-+...-...+ .++..|+.|++++-+..
T Consensus 173 --------------~~LqtL~Ls~-NPL~hfQLrQL---PsmtsL~vLhms~TqRT------------------------ 210 (1255)
T KOG0444|consen 173 --------------SMLQTLKLSN-NPLNHFQLRQL---PSMTSLSVLHMSNTQRT------------------------ 210 (1255)
T ss_pred --------------hhhhhhhcCC-ChhhHHHHhcC---ccchhhhhhhcccccch------------------------
Confidence 2333333333 22211110111 22233344444332200
Q ss_pred cccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCC
Q 005004 344 ELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQ 423 (720)
Q Consensus 344 ~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 423 (720)
..-+|.+ +..+.+|..++++.|.+ ..+|.-+-++++|+.|++|+| .
T Consensus 211 --------------------l~N~Pts-----ld~l~NL~dvDlS~N~L--------p~vPecly~l~~LrrLNLS~N-~ 256 (1255)
T KOG0444|consen 211 --------------------LDNIPTS-----LDDLHNLRDVDLSENNL--------PIVPECLYKLRNLRRLNLSGN-K 256 (1255)
T ss_pred --------------------hhcCCCc-----hhhhhhhhhccccccCC--------CcchHHHhhhhhhheeccCcC-c
Confidence 0012232 33445555566666655 555666666666666666665 4
Q ss_pred CcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccC--ChhHHHhccccccEEEcCCCCCCChh
Q 005004 424 LKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLT--NLEPVFESCLQLKVLKLQACKYLTNT 501 (720)
Q Consensus 424 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~ 501 (720)
++. +......-.+|+.|+++.|++... +.++-++++|+.|.+.+|++. ++|.+++.+..|+.+...+|. +.-+
T Consensus 257 ite--L~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElV 331 (1255)
T KOG0444|consen 257 ITE--LNMTEGEWENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELV 331 (1255)
T ss_pred eee--eeccHHHHhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccC
Confidence 443 222223334566666766666554 455666667777777666544 566677777777777666654 4433
Q ss_pred HHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCcc
Q 005004 502 SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 552 (720)
Q Consensus 502 ~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l~ 552 (720)
|+.+ ..|..|+.|.+.+|.+- .+|+.+--++.|+.|++..|+++.
T Consensus 332 -PEgl---cRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 332 -PEGL---CRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred -chhh---hhhHHHHHhccccccee--echhhhhhcCCcceeeccCCcCcc
Confidence 4444 55667777777776654 356666666777777777777664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1.5e-18 Score=205.09 Aligned_cols=343 Identities=20% Similarity=0.239 Sum_probs=223.0
Q ss_pred hhHHhhhcCCCCcEEEeCCCcc------CCccccccccc-CCCcEEEcccccceeeec--cCCCccEEeccCcchH---H
Q 005004 23 AFFHALADCSMLKSLNVNDATL------GNGVQEIPINH-DQLRRLEITKCRVMRVSI--RCPQLEHLSLKRSNMA---Q 90 (720)
Q Consensus 23 ~~~~~~~~~~~L~~L~l~~~~l------~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~--~~~~L~~L~l~~~~~~---~ 90 (720)
....+|.+|++|+.|.+..+.. ...+|+.+..+ .+|+.|++.++++..+|. .+.+|+.|+++++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccc
Confidence 3567899999999999976532 22456656665 459999999999888874 3678999999988876 3
Q ss_pred HHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC---CCcccccc
Q 005004 91 AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVR 167 (720)
Q Consensus 91 ~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~ 167 (720)
.+..+++|+.|+++++..+. .+| .+..+++|+.|++++|..+. ..+..+. .+++|+.|++++|. .+|..+ +
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~--~ip-~ls~l~~Le~L~L~~c~~L~-~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLK--EIP-DLSMATNLETLKLSDCSSLV-ELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccCCCCCEEECCCCCCcC--cCC-ccccCCcccEEEecCCCCcc-ccchhhh-ccCCCCEEeCCCCCCcCccCCcC-C
Confidence 45678889999998876554 344 36778889999999887443 4555555 78888888888876 445443 6
Q ss_pred CCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCC
Q 005004 168 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 247 (720)
Q Consensus 168 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~ 247 (720)
+++|+.|++++|..+... +. ...+|++|+++++.+ ..+|..+ .++
T Consensus 703 l~sL~~L~Lsgc~~L~~~-p~---~~~nL~~L~L~~n~i-~~lP~~~------------------------------~l~ 747 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSF-PD---ISTNISWLDLDETAI-EEFPSNL------------------------------RLE 747 (1153)
T ss_pred CCCCCEEeCCCCCCcccc-cc---ccCCcCeeecCCCcc-ccccccc------------------------------ccc
Confidence 778888888887544332 11 135677777777653 2333221 112
Q ss_pred cccEEEeccCcccccccccchhhH-HHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceecccc
Q 005004 248 ALHRINITSNSLQKLSLQKQENLT-SLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS 326 (720)
Q Consensus 248 ~L~~l~l~~~~~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 326 (720)
+|+.|.+.++...... .....+. .....+++|+.|++++|+.+.. .|..+ +.+++|+.|++++|..++.+|...
T Consensus 748 ~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si---~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 748 NLDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSI---QNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ccccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCccc-cChhh---hCCCCCCEEECCCCCCcCeeCCCC
Confidence 2222222221100000 0000000 0111247888889888654443 33444 678889999998887666554211
Q ss_pred CCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCccccccc
Q 005004 327 TSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA 406 (720)
Q Consensus 327 ~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~ 406 (720)
.+++|+.+++++|..+...... .++++.+++++|.+ ..+|..
T Consensus 823 -------------------~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n~i--------~~iP~s 864 (1153)
T PLN03210 823 -------------------NLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRTGI--------EEVPWW 864 (1153)
T ss_pred -------------------CccccCEEECCCCCcccccccc-----------ccccCEeECCCCCC--------ccChHH
Confidence 3567788888888766543222 24566677777776 667888
Q ss_pred ccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCC
Q 005004 407 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG 451 (720)
Q Consensus 407 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 451 (720)
+..+++|+.|++++|+.+.. ++.....+++|+.+++++|....
T Consensus 865 i~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 88899999999999988776 55556678888888888886543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.3e-17 Score=197.25 Aligned_cols=344 Identities=20% Similarity=0.184 Sum_probs=191.8
Q ss_pred HHhhcCCCCCEEEecCCC-----CCchhhHHHHHHhcCccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHH
Q 005004 116 LAATSCPQLESLDMSNCS-----CVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMA 188 (720)
Q Consensus 116 ~~~~~l~~L~~L~l~~~~-----~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 188 (720)
..+..+++|+.|.+..+. .+....+..+..-..+|+.|++.++. .+|..+ ...+|+.|++.++ .+.. .+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~-L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEK-LWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccc-ccc
Confidence 445666666666665432 01111223333122356666666654 455444 3566666766663 4432 334
Q ss_pred HhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccccccch
Q 005004 189 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE 268 (720)
Q Consensus 189 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~ 268 (720)
.+..+++|+.++++++.....+|. ++.+++|+.|++++|..-...+..+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~------------------------------ls~l~~Le~L~L~~c~~L~~lp~si- 677 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD------------------------------LSMATNLETLKLSDCSSLVELPSSI- 677 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc------------------------------cccCCcccEEEecCCCCccccchhh-
Confidence 445566666666666554444332 2223333444443332111111111
Q ss_pred hhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccc--c
Q 005004 269 NLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL--K 346 (720)
Q Consensus 269 ~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~--~ 346 (720)
..+++|+.|++++|+.++... ....+++|++|.+++|..+..+|.....++.+.+.+.. +..++. .
T Consensus 678 ------~~L~~L~~L~L~~c~~L~~Lp-----~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~~ 745 (1153)
T PLN03210 678 ------QYLNKLEDLDMSRCENLEILP-----TGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNLR 745 (1153)
T ss_pred ------hccCCCCEEeCCCCCCcCccC-----CcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc-ccccccccc
Confidence 123555555555555544321 11245556666666655555444433444444444332 222221 3
Q ss_pred CCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcc
Q 005004 347 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD 426 (720)
Q Consensus 347 ~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 426 (720)
+++|+.+.+.++....-++.. ..+..+....+++|+.+++++|... ..+|..+.++++|+.|++++|..+..
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~-~~l~~~~~~~~~sL~~L~Ls~n~~l-------~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERV-QPLTPLMTMLSPSLTRLFLSDIPSL-------VELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred ccccccccccccchhhccccc-cccchhhhhccccchheeCCCCCCc-------cccChhhhCCCCCCEEECCCCCCcCe
Confidence 456666666554322111100 0011111223456666666665431 66788888999999999999877665
Q ss_pred hhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHH
Q 005004 427 DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESL 506 (720)
Q Consensus 427 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 506 (720)
+|... .+++|+.|++++|...... . ...++|+.|++++|.+..+|..+..+++|+.|++.+|+.++.+... .
T Consensus 818 --LP~~~-~L~sL~~L~Ls~c~~L~~~--p--~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~-~ 889 (1153)
T PLN03210 818 --LPTGI-NLESLESLDLSGCSRLRTF--P--DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-I 889 (1153)
T ss_pred --eCCCC-CccccCEEECCCCCccccc--c--ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc-c
Confidence 55433 6889999999998765432 1 1246899999999999999999999999999999999888875332 2
Q ss_pred HhcCCCCCcceeecCCCc
Q 005004 507 YKKGSLPALQELDLSYGT 524 (720)
Q Consensus 507 ~~~~~~~~L~~L~l~~~~ 524 (720)
..+++|+.+++++|.
T Consensus 890 ---~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 ---SKLKHLETVDFSDCG 904 (1153)
T ss_pred ---ccccCCCeeecCCCc
Confidence 567888888888873
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.67 E-value=3.3e-17 Score=158.65 Aligned_cols=301 Identities=26% Similarity=0.423 Sum_probs=201.6
Q ss_pred CCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCccc
Q 005004 306 PMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL 385 (720)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l 385 (720)
..|+.|.+++|....+ ..+..+...|+++++|.+.+|..+.+....
T Consensus 138 g~lk~LSlrG~r~v~~----------------sslrt~~~~CpnIehL~l~gc~~iTd~s~~------------------ 183 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD----------------SSLRTFASNCPNIEHLALYGCKKITDSSLL------------------ 183 (483)
T ss_pred cccccccccccccCCc----------------chhhHHhhhCCchhhhhhhcceeccHHHHH------------------
Confidence 5688888888875432 245556667888888888887765543211
Q ss_pred ccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHh-hcCCCC
Q 005004 386 GIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL-RSLQNL 464 (720)
Q Consensus 386 ~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L 464 (720)
..-..|++|+++++..|..+++..+.....+|++|++++++.|+.+...+...+ ..+..+
T Consensus 184 -------------------sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l 244 (483)
T KOG4341|consen 184 -------------------SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKEL 244 (483)
T ss_pred -------------------HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhh
Confidence 112356777777777777777777776777888888888888877666555443 356666
Q ss_pred CeeecCCcccCChh---HHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCC-ccchHHHHHHHhhCCCC
Q 005004 465 TMLDLSYTFLTNLE---PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELLAYCTHL 540 (720)
Q Consensus 465 ~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~i~~~~~~~~l~~~~~L 540 (720)
+++...+|.-.++. ..-..+.-+.++++..|..+++...-.++ -.+..|+.++.++| .+++..+....+.+++|
T Consensus 245 ~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~--~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 245 EKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA--CGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred hhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh--hhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 66666666433321 23345667777778888888887655543 45778888888885 66666666777788888
Q ss_pred cEEeccCccCcccccccccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCCccccCCccEE
Q 005004 541 THVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL 620 (720)
Q Consensus 541 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~L~~L 620 (720)
+.+.+.+|..+++..+... -.+|++|+.+
T Consensus 323 ~~l~l~~c~~fsd~~ft~l---------------------------------------------------~rn~~~Le~l 351 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTML---------------------------------------------------GRNCPHLERL 351 (483)
T ss_pred EEEeccccchhhhhhhhhh---------------------------------------------------hcCChhhhhh
Confidence 8888888886655432211 2334445555
Q ss_pred EcCCCcChHHH-----HhhCCCccEEecccccchh--------hhhhcCCcccEEEeeccc-CChhhHHHHHhcCCCcce
Q 005004 621 NLSLSANLKEV-----DVACFNLCFLNLSNCCSLE--------TLKLDCPKLTSLFLQSCN-IDEEGVESAITQCGMLET 686 (720)
Q Consensus 621 ~l~~~~~l~~~-----~~~~~~L~~L~l~~~~~L~--------~l~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~ 686 (720)
++.+|..+.+- ...|+.|+.+.+++|.... ....+...|+.+.+++|+ |+ +..-..+..|++|+.
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~-d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT-DATLEHLSICRNLER 430 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch-HHHHHHHhhCcccce
Confidence 55544433332 2345555555555554222 222345789999999999 65 555566889999999
Q ss_pred EeccCCcCCCchhHHHHHHhCCCccee
Q 005004 687 LDVRFCPKICSTSMGRLRAACPSLKRI 713 (720)
Q Consensus 687 L~l~~c~~l~~~~~~~~~~~~p~l~~i 713 (720)
+++-+|..++.+++.+++..+|.++--
T Consensus 431 i~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred eeeechhhhhhhhhHHHHhhCccceeh
Confidence 999999999999999999999998743
No 14
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.63 E-value=9.3e-17 Score=155.58 Aligned_cols=277 Identities=29% Similarity=0.470 Sum_probs=208.1
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhh-cCCCCCeeecCCc-ccCC--hhHHHhcccc
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-SLQNLTMLDLSYT-FLTN--LEPVFESCLQ 486 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~--l~~~~~~~~~ 486 (720)
..|+.|.+++|....+..+......||++++|.+.+|..+++.....+. .|+.|+.|++..| .++. +......|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578888888877777666666778888888888888877665444444 5788888888875 3443 2234567888
Q ss_pred ccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCC-ccchHHHHHHHhhCCCCcEEeccCccCcccccccccCCCCCC
Q 005004 487 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFE 565 (720)
Q Consensus 487 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~i~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 565 (720)
|+.+++++|+.+++.....+. .++..++.+...+| ....+.+...-.+++-+.++++.+|..+++..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~--rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---------- 285 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQ--RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED---------- 285 (483)
T ss_pred HHHhhhccCchhhcCcchHHh--ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH----------
Confidence 888888888888776555542 56667777777776 44444555555667778888888887766543
Q ss_pred CCccccccccCCCcccccccccchhccccccccCCCCccccCcCC-ccccCCccEEEcCCCcChHHHH-----hhCCCcc
Q 005004 566 SPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPP-QARCFHLSSLNLSLSANLKEVD-----VACFNLC 639 (720)
Q Consensus 566 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~-----~~~~~L~ 639 (720)
.+..+.....++.+..++|..+.+..+.+ -.+|.+|+.+.+++|..+.... ..++.|+
T Consensus 286 ----------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 286 ----------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred ----------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 12233345668888888888888887777 5678999999999998777654 4789999
Q ss_pred EEeccccc-----chhhhhhcCCcccEEEeeccc-CChhhHH---HHHhcCCCcceEeccCCcCCCchhHHHHHHhCCCc
Q 005004 640 FLNLSNCC-----SLETLKLDCPKLTSLFLQSCN-IDEEGVE---SAITQCGMLETLDVRFCPKICSTSMGRLRAACPSL 710 (720)
Q Consensus 640 ~L~l~~~~-----~L~~l~~~~~~L~~L~l~~~~-i~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~p~l 710 (720)
.+++..|. .|.++...||.||++.+++|. |+|.++. ....+...|+.+.+++||.+++..++.+ ..|+.|
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~L 428 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNL 428 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCccc
Confidence 99999986 467777889999999999999 8877654 3334677899999999999999888888 999999
Q ss_pred ceeecc
Q 005004 711 KRIFSS 716 (720)
Q Consensus 711 ~~i~~~ 716 (720)
++|-.+
T Consensus 429 eri~l~ 434 (483)
T KOG4341|consen 429 ERIELI 434 (483)
T ss_pred ceeeee
Confidence 997544
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=3e-14 Score=146.57 Aligned_cols=274 Identities=19% Similarity=0.214 Sum_probs=149.4
Q ss_pred eecCCCCCch-hhHHhhhcCCCCcEEEeCCCccCC----cccccccccCCCcEEEcccccceee----------eccCCC
Q 005004 13 LTLGRGQLGD-AFFHALADCSMLKSLNVNDATLGN----GVQEIPINHDQLRRLEITKCRVMRV----------SIRCPQ 77 (720)
Q Consensus 13 L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~----------~~~~~~ 77 (720)
|+|.++.+++ .....|..+.+|+.|+++++.+.. .++..+...+.|++|+++++.+... ...+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555555552 233344455556666666665532 1334444455566666666555410 023556
Q ss_pred ccEEeccCcchH----HHHhcCC---CceEEeeccccCcchhhH---HHHhhcC-CCCCEEEecCCCCCchhhHHH---H
Q 005004 78 LEHLSLKRSNMA----QAVLNCP---LLHLLDIASCHKLSDAAI---RLAATSC-PQLESLDMSNCSCVSDESLRE---I 143 (720)
Q Consensus 78 L~~L~l~~~~~~----~~~~~l~---~L~~L~l~~~~~l~~~~l---~~~~~~l-~~L~~L~l~~~~~l~~~~~~~---~ 143 (720)
|+.|++++|.+. ..+..+. +|++|++++|. +++... ...+..+ ++|++|++++|. ++...... .
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~ 160 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA 160 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH
Confidence 666666666553 3333333 37777777774 553332 2344555 777778877776 44322222 2
Q ss_pred HHhcCccceeeccCCC-C------CccccccCCcCcEEeccCCCCCchhhH----HHhhccccccEEeccCCcccccccc
Q 005004 144 ALSCANLRILNSSYCP-N------ISLESVRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELDNCNLLTSVSL 212 (720)
Q Consensus 144 ~~~l~~L~~L~l~~~~-~------~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~ 212 (720)
...+++|++|++++|. . ++..+...++|++|++++| .+.+... ..+..+++|++|++++|...+....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 2255677777777775 1 2222334567888888874 6655443 3344567888888888765432111
Q ss_pred ccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccc
Q 005004 213 ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 292 (720)
Q Consensus 213 ~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~ 292 (720)
.+.. . .....+.|+++++++|.++.. +...+......+++|+++++++ |.++
T Consensus 240 ~l~~-------------------~-----~~~~~~~L~~L~l~~n~i~~~---~~~~l~~~~~~~~~L~~l~l~~-N~l~ 291 (319)
T cd00116 240 ALAS-------------------A-----LLSPNISLLTLSLSCNDITDD---GAKDLAEVLAEKESLLELDLRG-NKFG 291 (319)
T ss_pred HHHH-------------------H-----HhccCCCceEEEccCCCCCcH---HHHHHHHHHhcCCCccEEECCC-CCCc
Confidence 1100 0 011235677778877777532 2223333333457888888888 6777
Q ss_pred hhhhhhhcCC-CCC-CCccEEEeccCC
Q 005004 293 NSVCEVFSDG-GGC-PMLKSLVLDNCE 317 (720)
Q Consensus 293 ~~~~~~~~~~-~~~-~~L~~L~l~~~~ 317 (720)
+.....++.. ... +.|+++++.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 6544433322 333 578888877653
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=4.3e-16 Score=149.68 Aligned_cols=126 Identities=14% Similarity=0.186 Sum_probs=103.5
Q ss_pred CCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEccc-ccceeeec----cCCCccEEecc
Q 005004 10 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK-CRVMRVSI----RCPQLEHLSLK 84 (720)
Q Consensus 10 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~----~~~~L~~L~l~ 84 (720)
-+.++|..|+|+.+.+++|+.+++||.|||++|+++..-|++|..+.+|-+|-+.+ |+|..+++ ++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 35689999999999999999999999999999999888899999999988887776 99998873 57777777777
Q ss_pred CcchH----HHHhcCCCceEEeeccccCcchhhHHH-HhhcCCCCCEEEecCCCCCchh
Q 005004 85 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRL-AATSCPQLESLDMSNCSCVSDE 138 (720)
Q Consensus 85 ~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~ 138 (720)
-|.+. ..+..+++|..|.+..|. +. .++. .+..+..++.+.+..|.++.+-
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~-~q--~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNK-IQ--SICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchh-hh--hhccccccchhccchHhhhcCcccccc
Confidence 76665 788899999999998875 33 4554 6777888888888888755543
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=1.5e-15 Score=145.96 Aligned_cols=93 Identities=24% Similarity=0.226 Sum_probs=77.7
Q ss_pred hHHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHH
Q 005004 455 LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 533 (720)
Q Consensus 455 ~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~ 533 (720)
..+|..+++|++|++++|.++.+.+ +|.+...+++|.+..|+ +..+....+ .++..|+.|++++|+|+. ..+..
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f---~~ls~L~tL~L~~N~it~-~~~~a 341 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF---QGLSGLKTLSLYDNQITT-VAPGA 341 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh---hccccceeeeecCCeeEE-Eeccc
Confidence 4568889999999999999998866 88889999999999877 877766666 778889999999999987 67777
Q ss_pred HhhCCCCcEEeccCccCcc
Q 005004 534 LAYCTHLTHVSLNGCGNMH 552 (720)
Q Consensus 534 l~~~~~L~~L~l~~~~~l~ 552 (720)
|+...+|.+|.+-.|+...
T Consensus 342 F~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred ccccceeeeeehccCcccC
Confidence 8888899999998877554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=5.1e-13 Score=137.47 Aligned_cols=253 Identities=21% Similarity=0.263 Sum_probs=169.2
Q ss_pred ccccCcCCeeecCCCCCchh----hHHhhhcCCCCcEEEeCCCccCC------cccccccccCCCcEEEcccccceeee-
Q 005004 4 VSLLRNLEALTLGRGQLGDA----FFHALADCSMLKSLNVNDATLGN------GVQEIPINHDQLRRLEITKCRVMRVS- 72 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~~~l~~------~~~~~~~~l~~L~~L~l~~~~~~~~~- 72 (720)
|..+++|+.|+++++.++.. ++..+...++|++|+++++.+.. .++..+..+++|++|++++|.+....
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 45667788999999888654 34455677889999998887651 23445666789999999988875321
Q ss_pred ---ccC---CCccEEeccCcchH--------HHHhcC-CCceEEeeccccCcchh---hHHHHhhcCCCCCEEEecCCCC
Q 005004 73 ---IRC---PQLEHLSLKRSNMA--------QAVLNC-PLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSC 134 (720)
Q Consensus 73 ---~~~---~~L~~L~l~~~~~~--------~~~~~l-~~L~~L~l~~~~~l~~~---~l~~~~~~l~~L~~L~l~~~~~ 134 (720)
..+ ++|++|++++|.+. ..+..+ ++|+.|++++|. ++.. .++..+..+++|++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~- 176 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG- 176 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-
Confidence 122 45999999988775 345566 888999999885 5522 344566777889999999887
Q ss_pred CchhhHHHHHH---hcCccceeeccCCC-------CCccccccCCcCcEEeccCCCCCchhhHHHhhcc-----ccccEE
Q 005004 135 VSDESLREIAL---SCANLRILNSSYCP-------NISLESVRLPMLTVLQLHSCEGITSASMAAISHS-----YMLEVL 199 (720)
Q Consensus 135 l~~~~~~~~~~---~l~~L~~L~l~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-----~~L~~L 199 (720)
+.+.....+.. .+++|+.|++++|. .+...+..+++|++|+++++ .+++.....+... +.|++|
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEE
Confidence 66555444433 34589999999885 12334556788999999984 7777666555532 688888
Q ss_pred eccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhC-C
Q 005004 200 ELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQC-Q 278 (720)
Q Consensus 200 ~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~-~ 278 (720)
++++|.+.......+.. .+..++.|+.+++++|.++... ...+....... +
T Consensus 256 ~l~~n~i~~~~~~~l~~-------------------------~~~~~~~L~~l~l~~N~l~~~~---~~~~~~~~~~~~~ 307 (319)
T cd00116 256 SLSCNDITDDGAKDLAE-------------------------VLAEKESLLELDLRGNKFGEEG---AQLLAESLLEPGN 307 (319)
T ss_pred EccCCCCCcHHHHHHHH-------------------------HHhcCCCccEEECCCCCCcHHH---HHHHHHHHhhcCC
Confidence 88888654221111100 2344578899999999887642 22233232233 6
Q ss_pred CceEEecCC
Q 005004 279 CLQEVDLTD 287 (720)
Q Consensus 279 ~L~~L~l~~ 287 (720)
.|+++++.+
T Consensus 308 ~~~~~~~~~ 316 (319)
T cd00116 308 ELESLWVKD 316 (319)
T ss_pred chhhcccCC
Confidence 888888876
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=9.7e-13 Score=144.54 Aligned_cols=253 Identities=19% Similarity=0.158 Sum_probs=164.6
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcch
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 88 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~ 88 (720)
+-..|+++++.++ .+|..+. ++|+.|++++|++. .+|.. .++|++|++++|++..+|...++|+.|++++|.+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCch
Confidence 3557889988887 4566664 47889999998884 46643 5788999999999988887778899999999888
Q ss_pred HHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccc
Q 005004 89 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESV 166 (720)
Q Consensus 89 ~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~ 166 (720)
.......++|+.|++++|. ++ .+|. ..++|++|++++|. +.. .+. ...+|+.|++++|. .+|..
T Consensus 275 ~~Lp~lp~~L~~L~Ls~N~-Lt--~LP~---~p~~L~~LdLS~N~-L~~-Lp~----lp~~L~~L~Ls~N~L~~LP~l-- 340 (788)
T PRK15387 275 THLPALPSGLCKLWIFGNQ-LT--SLPV---LPPGLQELSVSDNQ-LAS-LPA----LPSELCKLWAYNNQLTSLPTL-- 340 (788)
T ss_pred hhhhhchhhcCEEECcCCc-cc--cccc---cccccceeECCCCc-ccc-CCC----CcccccccccccCcccccccc--
Confidence 7444445678889998884 65 4554 24678899998886 442 111 22467778888775 44431
Q ss_pred cCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCC
Q 005004 167 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 246 (720)
Q Consensus 167 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~ 246 (720)
..+|+.|++++ +.++.... ...+|+.|++++|.+. .+|....+|+.| +++.+.++.+.. ..
T Consensus 341 -p~~Lq~LdLS~-N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l~~~L~~L-----------dLs~N~Lt~LP~-l~ 401 (788)
T PRK15387 341 -PSGLQELSVSD-NQLASLPT----LPSELYKLWAYNNRLT-SLPALPSGLKEL-----------IVSGNRLTSLPV-LP 401 (788)
T ss_pred -ccccceEecCC-CccCCCCC----CCcccceehhhccccc-cCcccccccceE-----------EecCCcccCCCC-cc
Confidence 14678888887 46665321 1356777777777544 344333334443 334444433211 12
Q ss_pred CcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCC
Q 005004 247 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 317 (720)
Q Consensus 247 ~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (720)
+.|+.|++++|.++.+. . . ..+|+.|++++ |.++.+ |..+ ..+++|+.|++++|.
T Consensus 402 s~L~~LdLS~N~LssIP-~----l------~~~L~~L~Ls~-NqLt~L-P~sl---~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNRLTSLP-M----L------PSGLLSLSVYR-NQLTRL-PESL---IHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCcCCCCC-c----c------hhhhhhhhhcc-Cccccc-ChHH---hhccCCCeEECCCCC
Confidence 46788888888776531 1 0 14567788877 577643 3334 567788888888876
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=5.5e-15 Score=125.53 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=121.7
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee---ccCCCc
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQL 78 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~L 78 (720)
+.+-.+.+++.|.+++|.++ ..|..++.+.+|++|++++|++ ..+|..++.+++|++|++.-|++..+| +.+|-|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 34556778889999999997 4566888999999999999988 578888899999999999988888777 357888
Q ss_pred cEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCcccee
Q 005004 79 EHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 153 (720)
Q Consensus 79 ~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 153 (720)
++||+.+|++. ..|..++.|+.|++++|. . +.+|..++++++|+.|.++.|..+ ..+.++. .+..|++|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdndll--~lpkeig-~lt~lrel 178 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDNDLL--SLPKEIG-DLTRLREL 178 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCchh--hCcHHHH-HHHHHHHH
Confidence 88888887776 455566777888888775 3 356777888888888888888733 4566666 77777777
Q ss_pred eccCCC--CCcccccc
Q 005004 154 NSSYCP--NISLESVR 167 (720)
Q Consensus 154 ~l~~~~--~~~~~~~~ 167 (720)
++.++. -+|+++++
T Consensus 179 hiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 179 HIQGNRLTVLPPELAN 194 (264)
T ss_pred hcccceeeecChhhhh
Confidence 777776 55655554
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=3.2e-12 Score=140.55 Aligned_cols=114 Identities=24% Similarity=0.126 Sum_probs=55.5
Q ss_pred CccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEEE
Q 005004 412 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 491 (720)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 491 (720)
+|+.|++++| .++. +|.. .++|+.|++.+|.+.... . ..++|+.|++++|.+..+|.. .++|+.|+
T Consensus 343 ~Lq~LdLS~N-~Ls~--LP~l---p~~L~~L~Ls~N~L~~LP---~--l~~~L~~LdLs~N~Lt~LP~l---~s~L~~Ld 408 (788)
T PRK15387 343 GLQELSVSDN-QLAS--LPTL---PSELYKLWAYNNRLTSLP---A--LPSGLKELIVSGNRLTSLPVL---PSELKELM 408 (788)
T ss_pred ccceEecCCC-ccCC--CCCC---CcccceehhhccccccCc---c--cccccceEEecCCcccCCCCc---ccCCCEEE
Confidence 5566666655 3332 2221 234555555555544321 1 123456666666665555432 23555666
Q ss_pred cCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 492 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 492 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+++|. ++.+ +. ...+|+.|++++|+++. +|..+..+++|+.|++++|+
T Consensus 409 LS~N~-LssI-P~------l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 409 VSGNR-LTSL-PM------LPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccCCc-CCCC-Cc------chhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCC
Confidence 66554 4432 11 12345556666665552 44445555566666666554
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=3.4e-11 Score=133.40 Aligned_cols=243 Identities=16% Similarity=0.202 Sum_probs=131.5
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeecc-CCCccEEeccCcc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRSN 87 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~ 87 (720)
+.+.|+++++.++. +|..+ .++|+.|++++|.+. .+|..+. .+|++|++++|.+..++.. .++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 45677777776664 34433 246777888877774 4555432 4777888887777766643 3457777777776
Q ss_pred hHHHHhc-CCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccc
Q 005004 88 MAQAVLN-CPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE 164 (720)
Q Consensus 88 ~~~~~~~-l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~ 164 (720)
+...... .++|+.|++++|. ++ .+|..+. ++|+.|++++|. +.. .+..+. ++|+.|++++|. .+|..
T Consensus 253 L~~LP~~l~s~L~~L~Ls~N~-L~--~LP~~l~--~sL~~L~Ls~N~-Lt~-LP~~lp---~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 253 ITELPERLPSALQSLDLFHNK-IS--CLPENLP--EELRYLSVYDNS-IRT-LPAHLP---SGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCcCChhHhCCCCEEECcCCc-cC--ccccccC--CCCcEEECCCCc-ccc-Ccccch---hhHHHHHhcCCccccCCcc
Confidence 6521111 2357777777653 54 3454332 467777777765 332 222221 356666666654 33332
Q ss_pred cccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeecc
Q 005004 165 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 244 (720)
Q Consensus 165 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~ 244 (720)
+. ++|+.|++.++ .++.. +..+ .++|+.|++++|.+. .+|.. +
T Consensus 323 l~--~sL~~L~Ls~N-~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~-----------------------------l- 365 (754)
T PRK15370 323 LP--PGLKTLEAGEN-ALTSL-PASL--PPELQVLDVSKNQIT-VLPET-----------------------------L- 365 (754)
T ss_pred cc--ccceeccccCC-ccccC-Chhh--cCcccEEECCCCCCC-cCChh-----------------------------h-
Confidence 22 45556666553 34332 2222 145555555555332 12211 1
Q ss_pred CCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcC-CCCCCCccEEEeccCC
Q 005004 245 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD-GGGCPMLKSLVLDNCE 317 (720)
Q Consensus 245 ~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~~~~~L~~L~l~~~~ 317 (720)
.+.|+.|++++|.++... . .+ ...|+.|++++ |.++... ..++. ....+++..+++.+|.
T Consensus 366 -p~~L~~LdLs~N~Lt~LP-~---~l------~~sL~~LdLs~-N~L~~LP-~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 -PPTITTLDVSRNALTNLP-E---NL------PAALQIMQASR-NNLVRLP-ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -cCCcCEEECCCCcCCCCC-H---hH------HHHHHHHhhcc-CCcccCc-hhHHHHhhcCCCccEEEeeCCC
Confidence 235777777777776431 1 11 13577778877 5666432 22211 1445777888887775
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=7e-13 Score=112.89 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=122.4
Q ss_pred CcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcch
Q 005004 348 PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDD 427 (720)
Q Consensus 348 ~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 427 (720)
.++..+.+++++- ..+|++ +.++.+|+.+++.+|++ ..+|.+++.+++|+.|+++-| .+..
T Consensus 33 s~ITrLtLSHNKl----~~vppn-----ia~l~nlevln~~nnqi--------e~lp~~issl~klr~lnvgmn-rl~~- 93 (264)
T KOG0617|consen 33 SNITRLTLSHNKL----TVVPPN-----IAELKNLEVLNLSNNQI--------EELPTSISSLPKLRILNVGMN-RLNI- 93 (264)
T ss_pred hhhhhhhcccCce----eecCCc-----HHHhhhhhhhhcccchh--------hhcChhhhhchhhhheecchh-hhhc-
Confidence 4455555555442 235665 67788888899999988 788888999999999999876 4433
Q ss_pred hhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHH
Q 005004 428 CLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLY 507 (720)
Q Consensus 428 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 507 (720)
+|..|.++|.|++|++.+|++.+..-+..|..++.|+.|+++.|.+..+|+..+++++|+.|.+..|+.++ . +..+
T Consensus 94 -lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-l-pkei- 169 (264)
T KOG0617|consen 94 -LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-L-PKEI- 169 (264)
T ss_pred -CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-C-cHHH-
Confidence 77888899999999999998887766777888889999999999999999989999999999999988443 2 4444
Q ss_pred hcCCCCCcceeecCCCccch
Q 005004 508 KKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 508 ~~~~~~~L~~L~l~~~~i~~ 527 (720)
+.+..|++|++.+|+++.
T Consensus 170 --g~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 170 --GDLTRLRELHIQGNRLTV 187 (264)
T ss_pred --HHHHHHHHHhcccceeee
Confidence 667889999999998874
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=4.4e-10 Score=124.75 Aligned_cols=104 Identities=26% Similarity=0.285 Sum_probs=50.7
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEE
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 490 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 490 (720)
++|+.|++++| .++. ++..+ .++|+.|++++|.+... +..+ .++|+.|++++|.+..+|..+. ..|+.|
T Consensus 325 ~sL~~L~Ls~N-~Lt~--LP~~l--~~sL~~L~Ls~N~L~~L--P~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~L 393 (754)
T PRK15370 325 PGLKTLEAGEN-ALTS--LPASL--PPELQVLDVSKNQITVL--PETL--PPTITTLDVSRNALTNLPENLP--AALQIM 393 (754)
T ss_pred ccceeccccCC-cccc--CChhh--cCcccEEECCCCCCCcC--Chhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHH
Confidence 45666666665 3332 33222 24566666666655432 1222 2456666666666666555432 245566
Q ss_pred EcCCCCCCChhHHHHHHh-cCCCCCcceeecCCCccch
Q 005004 491 KLQACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 491 ~l~~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~~~i~~ 527 (720)
++++|+ ++.. +..++. ...++.+..+++.+|.++.
T Consensus 394 dLs~N~-L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 394 QASRNN-LVRL-PESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hhccCC-cccC-chhHHHHhhcCCCccEEEeeCCCccH
Confidence 666654 4332 221111 1334555666666666553
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=1.7e-10 Score=110.30 Aligned_cols=139 Identities=24% Similarity=0.277 Sum_probs=97.9
Q ss_pred CCCCccEEeccCCCCCcchh---hhhhhccCCCccEEeecCCCCCCchh---hHHhhcCCCCCeeecCCcccCC-----h
Q 005004 409 NCPLLTSLDASFCSQLKDDC---LSATTTSCPLIESLILMSCQSIGPDG---LYSLRSLQNLTMLDLSYTFLTN-----L 477 (720)
Q Consensus 409 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----l 477 (720)
.-+.|+.+...+| .+.+.+ +...+...+.|+.+.+..|.+..... ...+.++++|+.||+..|-++. +
T Consensus 155 ~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3466778777776 444432 33346777888888888887655332 3567788999999999988773 4
Q ss_pred hHHHhccccccEEEcCCCCCCChhHHHHHH-h-cCCCCCcceeecCCCccchH---HHHHHHhhCCCCcEEeccCcc
Q 005004 478 EPVFESCLQLKVLKLQACKYLTNTSLESLY-K-KGSLPALQELDLSYGTLCQS---AIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 478 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~-~~~~~~L~~L~l~~~~i~~~---~~~~~l~~~~~L~~L~l~~~~ 549 (720)
...+..+++|++|++++|. +...+...+. . -...|+|+.+.+.+|.|+.. .+.......|.|..|+|++|.
T Consensus 234 akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4467788899999999988 6655544441 1 24578899999999988753 233344567889999999886
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.3e-11 Score=110.78 Aligned_cols=246 Identities=24% Similarity=0.310 Sum_probs=152.7
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcC-CCCCeeecCCcccCC--hhHHHhccccc
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL-QNLTMLDLSYTFLTN--LEPVFESCLQL 487 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--l~~~~~~~~~L 487 (720)
...+.+|+.+- .+.......... .....+.+......+..-.+.+.-. +.|+.+|+++..++. +-..+++|.+|
T Consensus 136 ~lW~~lDl~~r-~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 136 SLWQTLDLTGR-NIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL 212 (419)
T ss_pred cceeeeccCCC-ccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence 44567777763 343332333222 2344555553222222112222222 458999999988873 55578899999
Q ss_pred cEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCC-ccchHHHHHHHhhCCCCcEEeccCccCcccccccccCCCCCCC
Q 005004 488 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFES 566 (720)
Q Consensus 488 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~i~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 566 (720)
+.|.+++++ +.+-....+ +.-.+|+.++++.| .+++....-.+.+|+.|++|++++|.-..+.
T Consensus 213 k~lSlEg~~-LdD~I~~~i---AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~------------ 276 (419)
T KOG2120|consen 213 KNLSLEGLR-LDDPIVNTI---AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK------------ 276 (419)
T ss_pred hhccccccc-cCcHHHHHH---hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh------------
Confidence 999999977 777666666 67789999999996 7887677788899999999999999643321
Q ss_pred CccccccccCCCcccccccccchhccccccccCCCCccccCcCCccccCCccEEEcCCCcChHHHHhhCCCccEEecccc
Q 005004 567 PSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNC 646 (720)
Q Consensus 567 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 646 (720)
..........+++.|+++||.+.-.. ..+..+...||+|..||+|+|
T Consensus 277 --------------Vtv~V~hise~l~~LNlsG~rrnl~~-------------------sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 277 --------------VTVAVAHISETLTQLNLSGYRRNLQK-------------------SHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred --------------hhHHHhhhchhhhhhhhhhhHhhhhh-------------------hHHHHHHHhCCceeeeccccc
Confidence 01111222355777777777532111 134444455666666666666
Q ss_pred cchhh----hhhcCCcccEEEeeccc-CChhhHHHHHhcCCCcceEeccCCcCCCchhHHHHHHhCCCcc
Q 005004 647 CSLET----LKLDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLK 711 (720)
Q Consensus 647 ~~L~~----l~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~p~l~ 711 (720)
-.++. ....++.|+.|.++.|. |....+ -.+...|+|.+||+.+| +++..++-+-..||+++
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 53332 22346778888888887 431111 22456788888888887 66666777777777764
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.7e-10 Score=110.27 Aligned_cols=249 Identities=22% Similarity=0.316 Sum_probs=118.0
Q ss_pred ccccCcCCeeecCCCCCchhhHH----hhhcCCCCcEEEeCCCccC---CcccccccccCCCcEEEcccccceeeeccCC
Q 005004 4 VSLLRNLEALTLGRGQLGDAFFH----ALADCSMLKSLNVNDATLG---NGVQEIPINHDQLRRLEITKCRVMRVSIRCP 76 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~l~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 76 (720)
+..+..++.++|+||.+.....+ .+.+.++|+..++++--.. ..+|+++.-+. .....++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~-------------~aL~~~~ 92 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS-------------KALLGCP 92 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH-------------HHHhcCC
Confidence 34556677788888877655443 4446677777777753211 12222211100 0001233
Q ss_pred CccEEeccCcchH--------HHHhcCCCceEEeeccccCcchhh------------HHHHhhcCCCCCEEEecCCCCCc
Q 005004 77 QLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDAA------------IRLAATSCPQLESLDMSNCSCVS 136 (720)
Q Consensus 77 ~L~~L~l~~~~~~--------~~~~~l~~L~~L~l~~~~~l~~~~------------l~~~~~~l~~L~~L~l~~~~~l~ 136 (720)
+|++|+||.|.+. ..++.++.|++|.+.+|- +...+ ...-+..-++|+++..++|. +.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-le 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cc
Confidence 4444444444332 444555666666665552 33211 01112233455555555554 22
Q ss_pred hh---hHHHHHHhcCccceeeccCCCCCccccccCCcCcEEeccCCCCCch----hhHHHhhccccccEEeccCCccccc
Q 005004 137 DE---SLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITS----ASMAAISHSYMLEVLELDNCNLLTS 209 (720)
Q Consensus 137 ~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~ 209 (720)
+. .+...++..+.| +.+.++. +.+.. ....++..+++|++||+.+|.+...
T Consensus 171 n~ga~~~A~~~~~~~~l---------------------eevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTL---------------------EEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cccHHHHHHHHHhcccc---------------------ceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 22 222223333444 4444444 23322 2334555667777777777655443
Q ss_pred cccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCc
Q 005004 210 VSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCE 289 (720)
Q Consensus 210 ~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~ 289 (720)
....+.. .++..+.|++++++++.+...... .-...+....|+|+.|.+.+ |
T Consensus 229 gs~~Lak-------------------------aL~s~~~L~El~l~dcll~~~Ga~--a~~~al~~~~p~L~vl~l~g-N 280 (382)
T KOG1909|consen 229 GSVALAK-------------------------ALSSWPHLRELNLGDCLLENEGAI--AFVDALKESAPSLEVLELAG-N 280 (382)
T ss_pred HHHHHHH-------------------------HhcccchheeecccccccccccHH--HHHHHHhccCCCCceeccCc-c
Confidence 2221110 123334455555555555432111 11222223457888888888 4
Q ss_pred ccchhhh-hhhcCCCCCCCccEEEeccCC
Q 005004 290 SLTNSVC-EVFSDGGGCPMLKSLVLDNCE 317 (720)
Q Consensus 290 ~l~~~~~-~~~~~~~~~~~L~~L~l~~~~ 317 (720)
.++.... .....+...+.|++|.+++|.
T Consensus 281 eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 281 EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 6654322 222233557888888888886
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.6e-11 Score=109.45 Aligned_cols=193 Identities=19% Similarity=0.286 Sum_probs=130.8
Q ss_pred CeeecCCCCCchhhHHhhhcC--CCCcEEEeCCCccC-Cccccccccc-CCCcEEEccccccee-----eeccCCCccEE
Q 005004 11 EALTLGRGQLGDAFFHALADC--SMLKSLNVNDATLG-NGVQEIPINH-DQLRRLEITKCRVMR-----VSIRCPQLEHL 81 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~l~-~~~~~~~~~l-~~L~~L~l~~~~~~~-----~~~~~~~L~~L 81 (720)
+.+|+.+..|. |++...+ ....++.+...... ..+.+.+.-+ .+|++||++...++. +...|.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 35666666555 3333322 22334444432221 1122322222 458888888776652 23468888888
Q ss_pred eccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccC
Q 005004 82 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 157 (720)
Q Consensus 82 ~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 157 (720)
.+.++.+. ..++.-.+|+.|++++|.+++..++.-.+.+|+.|.+|++++|....+..-..+.+--.+|+.|+++|
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 88877655 66778888999999999888877777888899999999999997444443344443456888899988
Q ss_pred CC-CCcc-----ccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcc
Q 005004 158 CP-NISL-----ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 206 (720)
Q Consensus 158 ~~-~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 206 (720)
+. .+.. -..++|++.+|++++|..+++....++.+++.|++|.++.|..
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 86 2221 2346889999999998888888888888899999999988853
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=9.1e-10 Score=124.22 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=58.3
Q ss_pred ccCcCCeeecCCCC--CchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCccE
Q 005004 6 LLRNLEALTLGRGQ--LGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEH 80 (720)
Q Consensus 6 ~~~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~~ 80 (720)
.+++|+.|-+.+|. +..+..+.|..++.|++|||++|.-.+.+|..++++-+||+|+++++.+..+|. ++.+|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 45577888888775 555556667788888888888877667888888888888888888888887772 2444444
Q ss_pred EeccCc
Q 005004 81 LSLKRS 86 (720)
Q Consensus 81 L~l~~~ 86 (720)
|++.++
T Consensus 623 Lnl~~~ 628 (889)
T KOG4658|consen 623 LNLEVT 628 (889)
T ss_pred eccccc
Confidence 444433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.3e-11 Score=115.13 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=42.0
Q ss_pred cCcCCeeecCCCCCchhhH-HhhhcCCCCcEEEeCCCccCC--cccccccccCCCcEEEcccccceeeec-----cCCCc
Q 005004 7 LRNLEALTLGRGQLGDAFF-HALADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMRVSI-----RCPQL 78 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~L 78 (720)
+++|+...|.++.+..+.. +....|++++.|||++|-+.. .+......+++|+.|+++.|++..... .++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3444444444443332221 233345555555555544331 122223334555555555554443221 24444
Q ss_pred cEEeccCcchH-----HHHhcCCCceEEeeccc
Q 005004 79 EHLSLKRSNMA-----QAVLNCPLLHLLDIASC 106 (720)
Q Consensus 79 ~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~ 106 (720)
++|.++.+.+. .....+|+|+.|++..|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 44444444333 23334444444444444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1e-09 Score=98.67 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=32.4
Q ss_pred cCcCCeeecCCCCCchhhHHhhh-cCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccC
Q 005004 7 LRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 85 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~ 85 (720)
..+++.|+|.+|.|+.+ +.+. .+.+|++|++++|.+. .++. +..+++|++|++++|++..+.
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~-l~~L~~L~~L~L~~N~I~~i~------------- 80 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG-LPGLPRLKTLDLSNNRISSIS------------- 80 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT-----TT--EEE--SS---S-C-------------
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC-ccChhhhhhcccCCCCCCccc-------------
Confidence 33455555555555532 2233 3455555555555553 2322 333455555555555554442
Q ss_pred cchHHHH-hcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchh--hHHHHHHhcCccceeeccC
Q 005004 86 SNMAQAV-LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE--SLREIALSCANLRILNSSY 157 (720)
Q Consensus 86 ~~~~~~~-~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~ 157 (720)
+.+ ..+++|++|++++|. +.+..--..+..+++|++|++.+|+ +... .-..+...+++|+.||-..
T Consensus 81 ----~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 81 ----EGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ----HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ----cchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 222 245555555555543 3322112334455556666666555 2211 1111222566666666543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=1.8e-09 Score=100.85 Aligned_cols=131 Identities=24% Similarity=0.207 Sum_probs=104.0
Q ss_pred CCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhcccccc
Q 005004 409 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 488 (720)
Q Consensus 409 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 488 (720)
.-+.|+++|+|+| .++. +...+.-.|.++.|++++|.+... ..+..+++|+.||+++|.++.+..+-..+-+.+
T Consensus 282 TWq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hHhhhhhcccccc-chhh--hhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 4467889999997 4433 445566778999999999987764 347788999999999999988767777888999
Q ss_pred EEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCc
Q 005004 489 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 551 (720)
Q Consensus 489 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l 551 (720)
+|.+.+|. +.+ +.++..+=+|..||+++|+|....-...++.+|.|+.+.+.+||--
T Consensus 356 tL~La~N~-iE~-----LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNK-IET-----LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhh-Hhh-----hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999876 443 3334677789999999999987555567889999999999999843
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.1e-09 Score=105.86 Aligned_cols=90 Identities=23% Similarity=0.198 Sum_probs=47.8
Q ss_pred HhhcCCCCCeeecCCcccCC---hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHH
Q 005004 457 SLRSLQNLTMLDLSYTFLTN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 533 (720)
Q Consensus 457 ~~~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~ 533 (720)
....|++++.||++.|-+.. +......+|+|+.|+++.|. +......... ..++.|+.|.++.|.++...+...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~--~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTT--LLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccch--hhhhhhheEEeccCCCCHHHHHHH
Confidence 34455556666666655553 22244556666666666655 2211111110 235566666666666665555555
Q ss_pred HhhCCCCcEEeccCcc
Q 005004 534 LAYCTHLTHVSLNGCG 549 (720)
Q Consensus 534 l~~~~~L~~L~l~~~~ 549 (720)
+..||+|+.|++.+|.
T Consensus 218 ~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANE 233 (505)
T ss_pred HHhCCcHHHhhhhccc
Confidence 6666666666666664
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=3.8e-09 Score=95.02 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHH-hccccc
Q 005004 409 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF-ESCLQL 487 (720)
Q Consensus 409 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L 487 (720)
++.++++|++.+| .+.. +...-..+.+|+.|++++|.+.... .+..++.|++|++++|+++.+.+.+ ..+++|
T Consensus 17 n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~---~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITKLE---GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T---T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcccc---CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 4456777888876 3433 2222224667888888888877643 4666788888888888888876544 468889
Q ss_pred cEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchH--HHHHHHhhCCCCcEEeccCc
Q 005004 488 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGC 548 (720)
Q Consensus 488 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~--~~~~~l~~~~~L~~L~l~~~ 548 (720)
++|.+++|+ +.+.. .+..+..+++|+.|++.+|++++. .=...+..+|+|+.||-...
T Consensus 91 ~~L~L~~N~-I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNK-ISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS----SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCc-CCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 999888876 65432 223346788899999999888752 23345677899999987653
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=110.86 Aligned_cols=250 Identities=31% Similarity=0.483 Sum_probs=127.7
Q ss_pred CCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCC-CCCCchh---hHHhhcCCCCCeeecCCcc-cCC--hhHHHh
Q 005004 410 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSC-QSIGPDG---LYSLRSLQNLTMLDLSYTF-LTN--LEPVFE 482 (720)
Q Consensus 410 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~ 482 (720)
++.|+.+.+.+|..+.+..+......++.|+.|++.++ ......+ ......+++|+.|+++++. +++ +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56677777777666666555555666677777777662 2222211 1223345666666666665 443 222333
Q ss_pred ccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCc-cchHHHHHHHhhCCCCcEEeccCccCcccccccccCC
Q 005004 483 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT-LCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 561 (720)
Q Consensus 483 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-i~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 561 (720)
.|++|+.|.+.+|..+++.+...+. ..+++|++|++++|. +++..+......|++++.+.+..+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~--~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------- 333 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIA--ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------- 333 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHH--HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----------
Confidence 4666666666666655555555543 456666666666653 33333444445566555555444332
Q ss_pred CCCCCCccccccccCCCcccccccccchhccccccccCCCCcc-ccCcC-CccccCCccEEEcCCCcChHHHHhhCCCcc
Q 005004 562 QPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIR-KVFIP-PQARCFHLSSLNLSLSANLKEVDVACFNLC 639 (720)
Q Consensus 562 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~-~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~ 639 (720)
...++.+.+.+|.... +.... ....|++++.+.+..++ ......
T Consensus 334 ---------------------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~------ 379 (482)
T KOG1947|consen 334 ---------------------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL------ 379 (482)
T ss_pred ---------------------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch------
Confidence 0112222222222211 00000 12333333434333333 111110
Q ss_pred EEecccccch-hhhh---hcCCcccEEEeeccc-CChhhHHHHHhcCCCcceEeccCCcCCCchhHHHHHHh
Q 005004 640 FLNLSNCCSL-ETLK---LDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAA 706 (720)
Q Consensus 640 ~L~l~~~~~L-~~l~---~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 706 (720)
.+.+.+|+.+ +.+. ..+.+++.|+++.|. .++..+......+..++.+++++|+.++....+.+...
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 2333344433 2221 223448899999988 66555554433488899999999998888776665444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.6e-08 Score=74.52 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=54.2
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccc
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 68 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 68 (720)
++|++|++++|+++.+.++.|+++++|++|++++|.+...-++++.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999766667888899999999998875
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=6.6e-08 Score=109.40 Aligned_cols=248 Identities=20% Similarity=0.274 Sum_probs=151.0
Q ss_pred cCCCcEEEcccccceeeec--cCCCccEEeccCcc--hH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCE
Q 005004 55 HDQLRRLEITKCRVMRVSI--RCPQLEHLSLKRSN--MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 126 (720)
Q Consensus 55 l~~L~~L~l~~~~~~~~~~--~~~~L~~L~l~~~~--~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~ 126 (720)
....|+..+.++.+...+. .+++|++|-+..|. +. ..|..++.|+.||+++|..+. .+|..++.+-+||+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhc
Confidence 4667888888888776653 57789998888885 33 558899999999999987555 78999999999999
Q ss_pred EEecCCCCCchhhHHHHHHhcCccceeeccCCC---CCccccccCCcCcEEeccCCC-CCchhhHHHhhccccccEEecc
Q 005004 127 LDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCE-GITSASMAAISHSYMLEVLELD 202 (720)
Q Consensus 127 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~L~~L~l~ 202 (720)
|++++.. +. ..|..+. ++..|.+|++..+. .++.....+++|++|.+.... ..+......+..+.+|+.+...
T Consensus 600 L~L~~t~-I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTG-IS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCC-cc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999987 55 6777777 89999999999887 333445568999999998743 3334445556666777766664
Q ss_pred CCcccccccc---ccccccceecccccccccchhhhcccce--eeccCCCcccEEEeccCcccccccccchhhHHHHhhC
Q 005004 203 NCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSS--IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQC 277 (720)
Q Consensus 203 ~~~~~~~~~~---~~~~L~~l~~~~~~~l~~~~l~~~~l~~--l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~ 277 (720)
.... .+.. .+.+|..+...-+ +....... ..+..+..|+.|.+.++.+............... .+
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~-------~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-~f 746 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLS-------IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-CF 746 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhh-------hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhh-hH
Confidence 3322 1111 1122221111110 00000011 1455666677777766665432211111110000 13
Q ss_pred CCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCcee
Q 005004 278 QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 322 (720)
Q Consensus 278 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 322 (720)
+++..+.+.+|....+..+.. -.++|++|.+..|..++++
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~-----f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLL-----FAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred HHHHHHHhhccccccccchhh-----ccCcccEEEEecccccccC
Confidence 445555555554444443332 2467777777777655544
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.60 E-value=5.4e-08 Score=106.52 Aligned_cols=257 Identities=30% Similarity=0.467 Sum_probs=170.1
Q ss_pred CCccEEeccCCCCCcchh-hhhhhccCCCccEEeecCCCCCCchh-hHHhhcCCCCCeeecCCc-c-cCC----hhHHHh
Q 005004 411 PLLTSLDASFCSQLKDDC-LSATTTSCPLIESLILMSCQSIGPDG-LYSLRSLQNLTMLDLSYT-F-LTN----LEPVFE 482 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~-~-~~~----l~~~~~ 482 (720)
..+..+.+..+....... .......++.|+.+.+.+|....+.+ ......++.|++|+++++ . ... ......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 445555555544333322 33334568999999999998777643 355678999999999983 2 222 223566
Q ss_pred ccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCc-cchHHHHHHHhhCCCCcEEeccCccCcccccccccCC
Q 005004 483 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT-LCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 561 (720)
Q Consensus 483 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-i~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~ 561 (720)
.|++|+.+++..|..+++.....++ ..|++|+.|.+.+|. +++..+......++.|++|++++|..+.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~------- 311 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALA--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS------- 311 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHH--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH-------
Confidence 7899999999999989998888875 449999999988887 888888898999999999999999876432
Q ss_pred CCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCCccccCCccEEEcCCCcChH-----H-HHhhC
Q 005004 562 QPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLK-----E-VDVAC 635 (720)
Q Consensus 562 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-----~-~~~~~ 635 (720)
.+..+ ..+|++++.+.......|..++.+.+.++.... . ....+
T Consensus 312 -----------------------------~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~ 361 (482)
T KOG1947|consen 312 -----------------------------GLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSC 361 (482)
T ss_pred -----------------------------HHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcC
Confidence 23333 344555555433333445666666665443322 1 22356
Q ss_pred CCccEEecccccchhhhhhcCCcccEEEeeccc-CChhhHHHHHhcCCCcceEeccCCcCCCchhHHHHHHhCCCcceee
Q 005004 636 FNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIF 714 (720)
Q Consensus 636 ~~L~~L~l~~~~~L~~l~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~p~l~~i~ 714 (720)
++++.+.+..|. ..... ..+.+.+|+ ++ ..+......+.+++.|+++.|...++..+......|..++.+.
T Consensus 362 ~~l~~~~l~~~~-~~~~~------~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 362 PKLTDLSLSYCG-ISDLG------LELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred CCcchhhhhhhh-ccCcc------hHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 666666666654 11111 034445555 44 4455545555569999999999999988888755455555443
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=2.3e-08 Score=93.51 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=59.1
Q ss_pred ccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCccEEe
Q 005004 6 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLS 82 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~~L~ 82 (720)
.++.|+.|||++|.|+ .+-++..-.|.+|.|++++|.+.. + +.+..+++|++||+++|.+..+.+ .+-|+++|.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3445555566665554 233344445555666666555431 1 113445555555555555544332 244555555
Q ss_pred ccCcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCC
Q 005004 83 LKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 133 (720)
Q Consensus 83 l~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~ 133 (720)
++.|.+. ..++.+-+|..|++.+|+ +....-...+++++.|+.+.+.+|+
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 5555544 344444455555555543 3322222334455555555555544
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=3.6e-07 Score=96.78 Aligned_cols=189 Identities=22% Similarity=0.290 Sum_probs=129.3
Q ss_pred eeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccC-CCcEEEcccccceeee---ccCCCccEEeccCcc
Q 005004 12 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD-QLRRLEITKCRVMRVS---IRCPQLEHLSLKRSN 87 (720)
Q Consensus 12 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~---~~~~~L~~L~l~~~~ 87 (720)
.+++..+.+.. ....+...+.++.|++.+|.+ ..+++...... +|+.|++++|.+..++ ..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCccc-ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 35666665532 233444557788888888877 45666666664 8888888888888762 468888888888888
Q ss_pred hHHHHh---cCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCc
Q 005004 88 MAQAVL---NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS 162 (720)
Q Consensus 88 ~~~~~~---~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~ 162 (720)
+..... ..+.|+.|++++|. ++ .+|.......+|++|.+++|..+ ..+..+. .+..+..+.+.++. .++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~--~l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~-~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-IS--DLPPEIELLSALEELDLSNNSII--ELLSSLS-NLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cc--cCchhhhhhhhhhhhhhcCCcce--ecchhhh-hcccccccccCCceeeecc
Confidence 873222 77888888888875 55 56666666677888888888412 2333333 66777777777766 335
Q ss_pred cccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccc
Q 005004 163 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 211 (720)
Q Consensus 163 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 211 (720)
..++.++.++.|++++ +.++.... ++...+++.++++++......+
T Consensus 249 ~~~~~l~~l~~L~~s~-n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSN-NQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccc-cccccccc--ccccCccCEEeccCccccccch
Confidence 6777778888888887 46665544 7777888888888876655444
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=5.6e-07 Score=84.48 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=59.5
Q ss_pred ccCcCCeeecCCCCCch--hhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccce-----eeeccCCCc
Q 005004 6 LLRNLEALTLGRGQLGD--AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-----RVSIRCPQL 78 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~L 78 (720)
++++++.+||.+|.|+. .+...+.++|.|++|+++.|.+...|-.......+|++|.+.+..+. ++...+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46778889999998875 23334558899999999999887655444345678888888887664 233467777
Q ss_pred cEEeccCcchH
Q 005004 79 EHLSLKRSNMA 89 (720)
Q Consensus 79 ~~L~l~~~~~~ 89 (720)
+.|.++.|++.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 77777776544
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=3.8e-07 Score=96.60 Aligned_cols=176 Identities=20% Similarity=0.245 Sum_probs=134.5
Q ss_pred ccccCcCCeeecCCCCCchhhHHhhhcCC-CCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCcc
Q 005004 4 VSLLRNLEALTLGRGQLGDAFFHALADCS-MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLE 79 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~ 79 (720)
+..++.++.|++..+.++. ++....... +|+.|++++|.+ ..+|..++.+++|+.|++++|++..++. ..++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 3445678999999999875 444555564 999999999988 4566667889999999999999998885 789999
Q ss_pred EEeccCcchH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeecc
Q 005004 80 HLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 156 (720)
Q Consensus 80 ~L~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 156 (720)
.|++++|.+. ........|+++.+++|..+ ..+..+..+.++..+.+.++. +.. .+..+. .++.++.|+++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~---~~~~~~~~~~~l~~l~l~~n~-~~~-~~~~~~-~l~~l~~L~~s 263 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSII---ELLSSLSNLKNLSGLELSNNK-LED-LPESIG-NLSNLETLDLS 263 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcce---ecchhhhhcccccccccCCce-eee-ccchhc-cccccceeccc
Confidence 9999999987 22245666999999998523 356778888889999888876 322 133333 77889999999
Q ss_pred CCC--CCccccccCCcCcEEeccCCCCCchhhHHH
Q 005004 157 YCP--NISLESVRLPMLTVLQLHSCEGITSASMAA 189 (720)
Q Consensus 157 ~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 189 (720)
++. .++. ++.+.+++.|++++ +.+....+..
T Consensus 264 ~n~i~~i~~-~~~~~~l~~L~~s~-n~~~~~~~~~ 296 (394)
T COG4886 264 NNQISSISS-LGSLTNLRELDLSG-NSLSNALPLI 296 (394)
T ss_pred ccccccccc-ccccCccCEEeccC-ccccccchhh
Confidence 997 4444 88899999999998 4665544433
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.24 E-value=3.8e-08 Score=100.31 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=133.5
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeecc--CCCccEEeccCc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR--CPQLEHLSLKRS 86 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~L~~L~l~~~ 86 (720)
--...|++.|++. .+|..+..|..|+.+.+.+|.+ ..+|..+.++..|.+||++.|++..+|.. .--|+.|-+++|
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN 153 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC
Confidence 3456889999886 6788888899999999999998 67888899999999999999999988743 455899999999
Q ss_pred chH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CC
Q 005004 87 NMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NI 161 (720)
Q Consensus 87 ~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~ 161 (720)
.+. +.++....|.+|+.+.|+ +. .+|..++.+.+|+.|+++.|. +. ..+.++. .-.|..|+++.|+ .+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~ne-i~--slpsql~~l~slr~l~vrRn~-l~-~lp~El~--~LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNE-IQ--SLPSQLGYLTSLRDLNVRRNH-LE-DLPEELC--SLPLIRLDFSCNKISYL 226 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhh-hh--hchHHhhhHHHHHHHHHhhhh-hh-hCCHHHh--CCceeeeecccCceeec
Confidence 887 666788889999999886 33 588889999999999999887 33 4566664 3467888888887 77
Q ss_pred ccccccCCcCcEEeccCCCCCch
Q 005004 162 SLESVRLPMLTVLQLHSCEGITS 184 (720)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~l~~ 184 (720)
|-.+-++..|++|.|++ +.+..
T Consensus 227 Pv~fr~m~~Lq~l~Len-NPLqS 248 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLEN-NPLQS 248 (722)
T ss_pred chhhhhhhhheeeeecc-CCCCC
Confidence 77888888888888877 45543
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2.7e-06 Score=79.98 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=77.0
Q ss_pred CccEEeecCCCCCCchhhHHhh-cCCCCCeeecCCcccCC---hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCC
Q 005004 438 LIESLILMSCQSIGPDGLYSLR-SLQNLTMLDLSYTFLTN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 513 (720)
Q Consensus 438 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 513 (720)
.++.+.+.+|.+........++ .++.++++|+.+|.+++ +...+.++|.|+.|+++.|+ +... ...++ ....
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~-I~~lp--~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSD-IKSLP--LPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCc-cccCc--cccc
Confidence 4445555566554433233444 57889999999999985 55578899999999999877 5432 11111 2456
Q ss_pred CcceeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 514 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 514 ~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+|+.|.+.+..+.-......+..+|.++++.++.|.
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 899999999887765566777889999999999873
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=2.3e-06 Score=62.92 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=43.3
Q ss_pred CCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEeccCcc
Q 005004 32 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSLKRSN 87 (720)
Q Consensus 32 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~ 87 (720)
|+|++|++++|.+...-++.+.++++|++|++++|.+..++. ++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999999865445678889999999999999988762 45666666666554
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=3e-06 Score=94.07 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=54.0
Q ss_pred CcEEEeCCCccCCcccccccccCCCcEEEcccccce-eeeccCCCccEEeccCcchHHHHhcCCCceEEeeccccCcchh
Q 005004 34 LKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-RVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDA 112 (720)
Q Consensus 34 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 112 (720)
++.|+|++|.+.+.+|..+..+++|++|++++|.+. .++ ..+..+++|+.|++++|. ++ .
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-----------------~~~~~l~~L~~LdLs~N~-ls-g 480 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-----------------PSLGSITSLEVLDLSYNS-FN-G 480 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-----------------hHHhCCCCCCEEECCCCC-CC-C
Confidence 455566666555555555555666666666555553 121 334444555555555543 32 2
Q ss_pred hHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 113 AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 113 ~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
.+|..++.+++|++|++++|. +....+..+.....++..+++.+|.
T Consensus 481 ~iP~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 481 SIPESLGQLTSLRILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCchHHhcCCCCCEEECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 345555555555555555554 4444444444223344555555553
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.17 E-value=1.3e-07 Score=96.57 Aligned_cols=151 Identities=22% Similarity=0.188 Sum_probs=116.2
Q ss_pred CCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhH
Q 005004 377 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLY 456 (720)
Q Consensus 377 ~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 456 (720)
..|..|..+.+..|.+ ..+|..+.++..|++++++.| .+.. +|..+..|| |+.|.+++|++... +.
T Consensus 95 ~~f~~Le~liLy~n~~--------r~ip~~i~~L~~lt~l~ls~N-qlS~--lp~~lC~lp-Lkvli~sNNkl~~l--p~ 160 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCI--------RTIPEAICNLEALTFLDLSSN-QLSH--LPDGLCDLP-LKVLIVSNNKLTSL--PE 160 (722)
T ss_pred HHHHHHHHHHHHhccc--------eecchhhhhhhHHHHhhhccc-hhhc--CChhhhcCc-ceeEEEecCccccC--Cc
Confidence 3445566666777766 678888888899999999987 4433 444444444 88999998887665 55
Q ss_pred HhhcCCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhh
Q 005004 457 SLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY 536 (720)
Q Consensus 457 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~ 536 (720)
.++..++|..||.+.|++..+|..+.++.+|+.|++..|. +.++ ++.+ . .-.|..||+++|+++ .+|-.|..
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~l-p~El---~-~LpLi~lDfScNkis--~iPv~fr~ 232 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDL-PEEL---C-SLPLIRLDFSCNKIS--YLPVDFRK 232 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhC-CHHH---h-CCceeeeecccCcee--ecchhhhh
Confidence 6678888999999999999999999999999999999887 5544 4444 3 335889999999997 47888888
Q ss_pred CCCCcEEeccCcc
Q 005004 537 CTHLTHVSLNGCG 549 (720)
Q Consensus 537 ~~~L~~L~l~~~~ 549 (720)
+..|++|-|.+|+
T Consensus 233 m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 233 MRHLQVLQLENNP 245 (722)
T ss_pred hhhheeeeeccCC
Confidence 9999999999886
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=7.6e-08 Score=100.75 Aligned_cols=126 Identities=29% Similarity=0.315 Sum_probs=90.0
Q ss_pred CccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhccccccEE
Q 005004 412 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVL 490 (720)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L 490 (720)
.|...+.++| .+.. +...+.-++.++.|++++|++... ..+..+++|+.|||++|.+..+|. ...+|. |+.|
T Consensus 165 ~L~~a~fsyN-~L~~--mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVL--MDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchh-hHHh--HHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heee
Confidence 3555566665 3332 334455667888888888887663 367788999999999999988877 555666 9999
Q ss_pred EcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccC
Q 005004 491 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 491 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~ 550 (720)
.+++|. ++.. -++.++.+|+.||+++|-+.+-.--..+..+..|+.|.|.|||-
T Consensus 238 ~lrnN~-l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNA-LTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccH-HHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999876 5432 22367888999999998776533334466778889999999873
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=1.2e-05 Score=74.87 Aligned_cols=152 Identities=15% Similarity=0.274 Sum_probs=87.6
Q ss_pred ccCcCCeeecCCCCCchhhHHh----hhcCCCCcEEEeCCCccC---Cc-------ccccccccCCCcEEEccccccee-
Q 005004 6 LLRNLEALTLGRGQLGDAFFHA----LADCSMLKSLNVNDATLG---NG-------VQEIPINHDQLRRLEITKCRVMR- 70 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~~----~~~~~~L~~L~l~~~~l~---~~-------~~~~~~~l~~L~~L~l~~~~~~~- 70 (720)
-+..++.+|||||.|.....+. +.+-.+|++.++++--.. .. +.+++-.|++|+..++++|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3667888999999988765554 446678888888764221 11 22445556777777777777642
Q ss_pred ee-------ccCCCccEEeccCcchH-----------------HHHhcCCCceEEeeccccCcchhhH---HHHhhcCCC
Q 005004 71 VS-------IRCPQLEHLSLKRSNMA-----------------QAVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQ 123 (720)
Q Consensus 71 ~~-------~~~~~L~~L~l~~~~~~-----------------~~~~~l~~L~~L~l~~~~~l~~~~l---~~~~~~l~~ 123 (720)
++ ..-+.|.+|.+++|.+. ...++-|.|+.+....|. +..... ...+..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 11 34666777777776554 112344666666666553 332211 122333356
Q ss_pred CCEEEecCCCCCchhhHHHHH----HhcCccceeeccCCC
Q 005004 124 LESLDMSNCSCVSDESLREIA----LSCANLRILNSSYCP 159 (720)
Q Consensus 124 L~~L~l~~~~~l~~~~~~~~~----~~l~~L~~L~l~~~~ 159 (720)
|+++.+..|. |...++..++ ..+++|+.|++.+|.
T Consensus 187 lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 187 LKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred ceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 6777777665 5544333221 145666666666553
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.92 E-value=4.8e-07 Score=94.95 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=93.4
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEecc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 84 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~ 84 (720)
.|..-+++.|.++ ..-.+++-++.|++|||++|++.. .. .+..+++|++|||++|.+..++ .+|. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4556677777775 455678888999999999998853 32 5778999999999999988776 2455 9999999
Q ss_pred CcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCC
Q 005004 85 RSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 133 (720)
Q Consensus 85 ~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~ 133 (720)
+|.++ ..+.++.+|+.||++.|- +.+..--..++.+..|+.|+|.+|+
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99988 778899999999999874 4433323456777788899999987
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=2e-05 Score=87.29 Aligned_cols=138 Identities=25% Similarity=0.213 Sum_probs=106.2
Q ss_pred cCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChh--HHHhccc
Q 005004 408 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE--PVFESCL 485 (720)
Q Consensus 408 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~ 485 (720)
..+|+|+.|.+.+= .+....+.....++|+|..|+++++++... .+++.+++|+.|.+.+-.+..-. ..+..++
T Consensus 145 ~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 145 TMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred hhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 45899999999984 555555777888999999999999887764 56888899999999888777532 2677899
Q ss_pred cccEEEcCCCCCCChh--HHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 486 QLKVLKLQACKYLTNT--SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 486 ~L~~L~l~~~~~l~~~--~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+|+.|+++.-....+. ....++....+|+|+.||.+++.+....+...+..-|+|+.+.+-+|.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 9999999986544333 222234456799999999999999887777777788888888777654
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.89 E-value=2.5e-05 Score=86.80 Aligned_cols=108 Identities=23% Similarity=0.260 Sum_probs=82.4
Q ss_pred ccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCC-hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcce
Q 005004 439 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 517 (720)
Q Consensus 439 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~ 517 (720)
++.|++++|.+.... +..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|. +.+..+..+ +.+++|+.
T Consensus 420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l---~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESL---GQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHH---hcCCCCCE
Confidence 667788887766544 5678888889999999988874 67788888999999999877 776666666 67888999
Q ss_pred eecCCCccchHHHHHHHhh-CCCCcEEeccCccCcc
Q 005004 518 LDLSYGTLCQSAIEELLAY-CTHLTHVSLNGCGNMH 552 (720)
Q Consensus 518 L~l~~~~i~~~~~~~~l~~-~~~L~~L~l~~~~~l~ 552 (720)
|++++|+++. .+|..+.. ..++..+++.+|+.+.
T Consensus 495 L~Ls~N~l~g-~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 495 LNLNGNSLSG-RVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EECcCCcccc-cCChHHhhccccCceEEecCCcccc
Confidence 9999988876 55655543 3567788888887543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=3e-05 Score=85.94 Aligned_cols=134 Identities=24% Similarity=0.192 Sum_probs=101.5
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEE
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 490 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 490 (720)
.+|++|++++...+...........+|+|+.|.+.+-.+..++-..-..++|+|..|||++++++.+ .+.+.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5789999998766655656666778999999999998877765445677899999999999999987 778999999999
Q ss_pred EcCCCCCCCh-hHHHHHHhcCCCCCcceeecCCCccchH--HHHH---HHhhCCCCcEEeccCcc
Q 005004 491 KLQACKYLTN-TSLESLYKKGSLPALQELDLSYGTLCQS--AIEE---LLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 491 ~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~i~~~--~~~~---~l~~~~~L~~L~l~~~~ 549 (720)
.+.+-+ +.. ..... +..+++|+.||+|....... .+.. ....+|.|+.||.++..
T Consensus 201 ~mrnLe-~e~~~~l~~---LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLID---LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCC-CCchhhHHH---HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 998755 332 22333 37899999999998543321 1222 22358899999999754
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2.9e-06 Score=90.00 Aligned_cols=122 Identities=19% Similarity=0.297 Sum_probs=61.5
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec--cCCCccEEecc
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLSLK 84 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~L~~L~l~ 84 (720)
+..++.+++..|.|.. ....+..+++|+.|++.+|.+. .+...+..+.+|++|++++|.|..+.+ .++.|+.|+++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 3444444455554432 2233555666666666666553 233324445666666666666655542 34555566666
Q ss_pred CcchH--HHHhcCCCceEEeeccccCcchhhHHHH-hhcCCCCCEEEecCCC
Q 005004 85 RSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLA-ATSCPQLESLDMSNCS 133 (720)
Q Consensus 85 ~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~-~~~l~~L~~L~l~~~~ 133 (720)
+|.+. ..+..++.|+.+++++|. ++ .+... ...+..++.+.+.+|.
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~-i~--~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNR-IV--DIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCcchhccCCccchhhhcccCCcch-hh--hhhhhhhhhccchHHHhccCCc
Confidence 66554 333345555555555553 33 12111 3455555555555554
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=3.8e-06 Score=89.04 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=111.4
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec--cCCCccE
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEH 80 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~L~~ 80 (720)
.+..++++..|++.+|.|..+.. .+..+++|++|++++|.+.. +.. +..+..|+.|++++|.+..+.. .+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~-i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK-LEG-LSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhccc-chhhhhcchheecccccccc-ccc-hhhccchhhheeccCcchhccCCccchhhhc
Confidence 36788999999999999986433 27789999999999999853 333 4567789999999999998774 4899999
Q ss_pred EeccCcchH--HH--HhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC--ccceee
Q 005004 81 LSLKRSNMA--QA--VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA--NLRILN 154 (720)
Q Consensus 81 L~l~~~~~~--~~--~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~--~L~~L~ 154 (720)
+++++|.+. +. ...+.+++.+.+.+|. +.. ...+..+..+..+++..+. +... ..+. ... +|+.++
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~---i~~~~~~~~l~~~~l~~n~-i~~~--~~l~-~~~~~~L~~l~ 238 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS-IRE---IEGLDLLKKLVLLSLLDNK-ISKL--EGLN-ELVMLHLRELY 238 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc-hhc---ccchHHHHHHHHhhccccc-ceec--cCcc-cchhHHHHHHh
Confidence 999999988 44 4889999999999986 331 2223333444445666654 2211 1110 111 366777
Q ss_pred ccCCC--CCccccccCCcCcEEeccC
Q 005004 155 SSYCP--NISLESVRLPMLTVLQLHS 178 (720)
Q Consensus 155 l~~~~--~~~~~~~~~~~L~~L~l~~ 178 (720)
+++++ .++..+..+..+..+++..
T Consensus 239 l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 239 LSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred cccCccccccccccccccccccchhh
Confidence 77665 2223344444444444443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.63 E-value=0.00011 Score=68.63 Aligned_cols=173 Identities=19% Similarity=0.257 Sum_probs=115.3
Q ss_pred ccccCcCCeeecCCC---CCchhhHH-------hhhcCCCCcEEEeCCCccCCcccc----cccccCCCcEEEcccccce
Q 005004 4 VSLLRNLEALTLGRG---QLGDAFFH-------ALADCSMLKSLNVNDATLGNGVQE----IPINHDQLRRLEITKCRVM 69 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~---~i~~~~~~-------~~~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~ 69 (720)
+++-.+|++.+++.- +....+++ ++-+||+|+.++||+|-+....|+ .++....|.+|.+++|.+.
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 345567777777752 22233333 555889999999999888755443 3445678889999888775
Q ss_pred eee-----------------ccCCCccEEeccCcchH--------HHHhcCCCceEEeeccccCcchhhHH----HHhhc
Q 005004 70 RVS-----------------IRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDAAIR----LAATS 120 (720)
Q Consensus 70 ~~~-----------------~~~~~L~~L~l~~~~~~--------~~~~~l~~L~~L~l~~~~~l~~~~l~----~~~~~ 120 (720)
.+. ++-|.|++.....|.+. ..+..-.+|+.+.+..|. +.+.++. ..+..
T Consensus 134 p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y 212 (388)
T COG5238 134 PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFY 212 (388)
T ss_pred ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHH
Confidence 433 35788999999988776 223333689999998884 6655332 35678
Q ss_pred CCCCCEEEecCCCCCchhhHHHH---HHhcCccceeeccCCCC-------Ccccc--ccCCcCcEEeccC
Q 005004 121 CPQLESLDMSNCSCVSDESLREI---ALSCANLRILNSSYCPN-------ISLES--VRLPMLTVLQLHS 178 (720)
Q Consensus 121 l~~L~~L~l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~~-------~~~~~--~~~~~L~~L~l~~ 178 (720)
+++|+.|++..|. .+......+ ...++.|++|.+.+|-- +...+ ...|+|+.|...+
T Consensus 213 ~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 213 SHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred hCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 8999999999997 454443333 34567899999999851 11111 1356777776665
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=6.4e-05 Score=50.34 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=22.5
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccC
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 45 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~ 45 (720)
++|++|++++|+|+. ++..++++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 456777777777764 3435667777777777776653
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=9.3e-05 Score=49.58 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCCh
Q 005004 462 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTN 500 (720)
Q Consensus 462 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 500 (720)
++|++|++++|+++++|+.+..+++|+.|++++|+ +++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCC
Confidence 35666666666666666656666666666666665 543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00019 Score=64.13 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=80.0
Q ss_pred CCeeecCCCCCchhhHHhhh-cCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEecc
Q 005004 10 LEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSLK 84 (720)
Q Consensus 10 L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~ 84 (720)
=+.+++.+..+..+.. ++ ..-....+||++|.+. .+ +.+..+++|.+|.+++|+|..+.. -+++|++|.+.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3456666655543221 11 2345668888888763 22 335667889999999999988764 37888899999
Q ss_pred CcchH-----HHHhcCCCceEEeeccccCcchhh-H-HHHhhcCCCCCEEEecCCC
Q 005004 85 RSNMA-----QAVLNCPLLHLLDIASCHKLSDAA-I-RLAATSCPQLESLDMSNCS 133 (720)
Q Consensus 85 ~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~-l-~~~~~~l~~L~~L~l~~~~ 133 (720)
+|++. ..++.||+|++|.+-+|+ ++... . ...+..+++|+.||+.+-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 88887 556778888898888886 44211 1 1346677888888887654
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=9.3e-05 Score=66.10 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=77.4
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee-----ccCCCccEEec
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLSL 83 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~L~~L~l 83 (720)
....+||+.|.+.. .+.|..++.|.+|.+++|.+...-|..-.-+++|+.|.+.+|.+.++. +.||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44578888887753 556778899999999999987655655555788999999999987654 57999999999
Q ss_pred cCcchH-------HHHhcCCCceEEeeccc
Q 005004 84 KRSNMA-------QAVLNCPLLHLLDIASC 106 (720)
Q Consensus 84 ~~~~~~-------~~~~~l~~L~~L~l~~~ 106 (720)
-+|++. ..+..+|+|+.||+.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999887 45678999999999864
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00054 Score=69.85 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=31.5
Q ss_pred hCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceecc-ccCCceeEeecCCCccc
Q 005004 276 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAIT 341 (720)
Q Consensus 276 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~l~l~~~~~l~ 341 (720)
.+.+++.|++++| .++... .-.++|++|.+++|.+++.+|. ...+|+.+.+.+|.++.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS 108 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence 3577777887776 554331 1234577777777776655542 22344444444444333
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.0027 Score=64.94 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=45.9
Q ss_pred ccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCcee
Q 005004 243 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 322 (720)
Q Consensus 243 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 322 (720)
+..|..++.|+++++.+.... .+ .++|+.|.+++|+.++... ..+ .++|++|.+++|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----~L------P~sLtsL~Lsnc~nLtsLP-~~L-----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----VL------PNELTEITIENCNNLTTLP-GSI-----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----CC------CCCCcEEEccCCCCcccCC-chh-----hhhhhheEccCccccccc
Confidence 556788999999988766542 11 2579999999988875432 222 358999999999777665
Q ss_pred c
Q 005004 323 R 323 (720)
Q Consensus 323 ~ 323 (720)
|
T Consensus 111 P 111 (426)
T PRK15386 111 P 111 (426)
T ss_pred c
Confidence 5
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.84 E-value=0.00026 Score=59.07 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=63.0
Q ss_pred ccEEeecCCCCCCc-hhhHHhhcCCCCCeeecCCcccCChhHHHh-ccccccEEEcCCCCCCChhHHHHHHhcCCCCCcc
Q 005004 439 IESLILMSCQSIGP-DGLYSLRSLQNLTMLDLSYTFLTNLEPVFE-SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQ 516 (720)
Q Consensus 439 L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 516 (720)
+-.+++++|++... .....+.....|+.+++++|.+..+|+.|. .++.++.+++++|. +.++ ++.+ ..++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdv-PeE~---Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDV-PEEL---AAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhc-hHHH---hhhHHhh
Confidence 33444555544321 123455566667777777777777777554 44577777777755 6665 4434 5677777
Q ss_pred eeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 517 ELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 517 ~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
.|+++.|.+.. .+..+..+.++-.|+..++.
T Consensus 104 ~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 104 SLNLRFNPLNA--EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hcccccCcccc--chHHHHHHHhHHHhcCCCCc
Confidence 77777777753 44545446666666666654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.00047 Score=64.57 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=77.7
Q ss_pred hhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCc--ccC-ChhHHHhccccccEEEcCCCCCCChhHHHH
Q 005004 429 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT--FLT-NLEPVFESCLQLKVLKLQACKYLTNTSLES 505 (720)
Q Consensus 429 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 505 (720)
+......+..|+.+.+.++..++. ..+..+++|++|+++.| ++. +++.....+++|+++++++|. ++. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~--lst 108 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD--LST 108 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc--ccc
Confidence 444444556677777777666653 34667788889999888 444 466666777999999999877 664 333
Q ss_pred HHhcCCCCCcceeecCCCccch--HHHHHHHhhCCCCcEEeccCcc
Q 005004 506 LYKKGSLPALQELDLSYGTLCQ--SAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 506 l~~~~~~~~L~~L~l~~~~i~~--~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+..+..+.+|..|++.+|..+. ..=...+.-+++|+.|+-....
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 3344667788888888885543 1334556677888888776543
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.77 E-value=0.00023 Score=59.44 Aligned_cols=97 Identities=15% Similarity=0.220 Sum_probs=50.2
Q ss_pred CCcEEEeCCCccCCcccccccc---cCCCcEEEcccccceeeec----cCCCccEEeccCcchH---HHHhcCCCceEEe
Q 005004 33 MLKSLNVNDATLGNGVQEIPIN---HDQLRRLEITKCRVMRVSI----RCPQLEHLSLKRSNMA---QAVLNCPLLHLLD 102 (720)
Q Consensus 33 ~L~~L~l~~~~l~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~---~~~~~l~~L~~L~ 102 (720)
.+..++|+.|.+ .-++++.+. .++|...++++|.+..++. .++.++++++++|.+. ..++.++.|+.|+
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 444555555554 223333322 3444445666666555542 2334444555554443 4466666666666
Q ss_pred eccccCcchhhHHHHhhcCCCCCEEEecCCC
Q 005004 103 IASCHKLSDAAIRLAATSCPQLESLDMSNCS 133 (720)
Q Consensus 103 l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~ 133 (720)
+..|+ +. ..|..+..+.++-.|+..++.
T Consensus 107 l~~N~-l~--~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNP-LN--AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCc-cc--cchHHHHHHHhHHHhcCCCCc
Confidence 66664 33 345555556666666666664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00068 Score=63.55 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=59.7
Q ss_pred hcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccc--cce----eeeccCCCccEEeccCcchH-----HHHhcCCC
Q 005004 29 ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC--RVM----RVSIRCPQLEHLSLKRSNMA-----QAVLNCPL 97 (720)
Q Consensus 29 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~~~----~~~~~~~~L~~L~l~~~~~~-----~~~~~l~~ 97 (720)
..+..|+.|.+.+..++. +. .+-.+++|++|.++.| ++. .+...+|+|++++++.|.+. ...+.+.+
T Consensus 40 d~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 345556666666555431 11 1334667777777777 322 11234577888888877765 55667777
Q ss_pred ceEEeeccccCcch--hhHHHHhhcCCCCCEEEecCC
Q 005004 98 LHLLDIASCHKLSD--AAIRLAATSCPQLESLDMSNC 132 (720)
Q Consensus 98 L~~L~l~~~~~l~~--~~l~~~~~~l~~L~~L~l~~~ 132 (720)
|..|++..|. .+. ..--..+.-+++|++|+-...
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhcccccccc
Confidence 8888888775 321 111245666778887775443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.00026 Score=66.43 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=44.3
Q ss_pred cCCCcEEEcccccceeee--ccCCCccEEeccCcchH-----HHHhcCCCceEEeeccccCcchh---hHHHHhhcCCCC
Q 005004 55 HDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQL 124 (720)
Q Consensus 55 l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~---~l~~~~~~l~~L 124 (720)
++.|+.|.|+.|.|.++. ..|++|+.|.|+.|.|. ..+.++++|+.|.|..|+=-... .-..++.-+++|
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnL 119 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNL 119 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccc
Confidence 444555555555554443 24666666666666554 56678888888888776521111 123567778888
Q ss_pred CEEE
Q 005004 125 ESLD 128 (720)
Q Consensus 125 ~~L~ 128 (720)
+.|+
T Consensus 120 kKLD 123 (388)
T KOG2123|consen 120 KKLD 123 (388)
T ss_pred hhcc
Confidence 8887
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00056 Score=64.25 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=40.3
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH--HHhcccccc
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLK 488 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~ 488 (720)
.+.+.|+.-+| .+.|. ++...++.|++|.++=|.+.+ ...+..|+.|++|++..|.|.++.+ -+.++++|+
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 34455555555 44442 223455555555555555444 2345555555555555555555443 344555555
Q ss_pred EEEcCCCC
Q 005004 489 VLKLQACK 496 (720)
Q Consensus 489 ~L~l~~~~ 496 (720)
.|-|..|+
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 55555544
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.0014 Score=58.85 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=65.1
Q ss_pred CCccccCCccEEEcCCCcChHHHHhhCCCccEEecccccchhhhhhcCCcccEEEeeccc-CChhhHHHHHhcCCCcceE
Q 005004 609 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETL 687 (720)
Q Consensus 609 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L 687 (720)
..+.+++.+++|.+.+|..+.+.. |+.+....|+|+.|++++|+ ||+.++.- +..+++|+.|
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~----------------L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L 181 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWC----------------LERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRL 181 (221)
T ss_pred HHHhccchhhhheeccccchhhHH----------------HHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHH
Confidence 334555566666666666655554 67777778999999999999 99666654 7889999999
Q ss_pred eccCCcCCCch--hHHHHHHhCCCcceeeccccc
Q 005004 688 DVRFCPKICST--SMGRLRAACPSLKRIFSSLTT 719 (720)
Q Consensus 688 ~l~~c~~l~~~--~~~~~~~~~p~l~~i~~~~~~ 719 (720)
.+.+=+.+..- ....+-...|+.+=+...+++
T Consensus 182 ~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d~~~ 215 (221)
T KOG3864|consen 182 HLYDLPYVANLELVQRQLEEALPKCDIVGPDVDL 215 (221)
T ss_pred HhcCchhhhchHHHHHHHHHhCcccceechhhhh
Confidence 99987655542 233333778887766655543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.40 E-value=0.0061 Score=52.76 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=40.8
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQL 78 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L 78 (720)
.|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +...-..++.+++.|+.+.+.+ .+..++ ..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 577788888888874 566677778888888888888764 4333334455666677777754 333332 124444
Q ss_pred cEEecc
Q 005004 79 EHLSLK 84 (720)
Q Consensus 79 ~~L~l~ 84 (720)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0037 Score=56.28 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=61.5
Q ss_pred CccEEeccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccce
Q 005004 77 QLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRI 152 (720)
Q Consensus 77 ~L~~L~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 152 (720)
.++.+|-+++.|. +-+.+++.++.|.+.+|..+.|..+...-+-.++|+.|++++|..|++.++..+. ++++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence 3566777777766 5566777788888888887777666555566788999999999888888888887 7888888
Q ss_pred eeccC
Q 005004 153 LNSSY 157 (720)
Q Consensus 153 L~l~~ 157 (720)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 87765
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.31 E-value=0.016 Score=50.01 Aligned_cols=35 Identities=17% Similarity=0.412 Sum_probs=12.4
Q ss_pred hhcCCCCCeeecCCcccCChhH-HHhccccccEEEcC
Q 005004 458 LRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQ 493 (720)
Q Consensus 458 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~ 493 (720)
+.++++++.+.+.+ .+..++. .|..+++|+.+.+.
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eecccccccccccc-cccccccccccccccccccccC
Confidence 44444444444433 2222222 33444555555443
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.99 E-value=0.025 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCCcceEeccCCcCCCchhHHHHH
Q 005004 681 CGMLETLDVRFCPKICSTSMGRLR 704 (720)
Q Consensus 681 ~~~L~~L~l~~c~~l~~~~~~~~~ 704 (720)
|++|+.|++++|+.+++.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888777764
No 74
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.80 E-value=0.1 Score=30.21 Aligned_cols=22 Identities=41% Similarity=0.913 Sum_probs=18.0
Q ss_pred CCcccEEEeeccc-CChhhHHHH
Q 005004 656 CPKLTSLFLQSCN-IDEEGVESA 677 (720)
Q Consensus 656 ~~~L~~L~l~~~~-i~~~~~~~~ 677 (720)
||+|++|++++|. |+|.++...
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 6889999999998 988877653
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.70 E-value=0.085 Score=29.11 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=10.5
Q ss_pred CCcEEEeCCCccCCcccccc
Q 005004 33 MLKSLNVNDATLGNGVQEIP 52 (720)
Q Consensus 33 ~L~~L~l~~~~l~~~~~~~~ 52 (720)
+|++|++++|++. .+|+.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 3566666666654 455443
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.66 E-value=0.076 Score=29.32 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=6.0
Q ss_pred CCeeecCCCCCc
Q 005004 10 LEALTLGRGQLG 21 (720)
Q Consensus 10 L~~L~l~~~~i~ 21 (720)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.24 E-value=0.095 Score=26.79 Aligned_cols=15 Identities=60% Similarity=0.649 Sum_probs=7.1
Q ss_pred CCCeeecCCcccCCh
Q 005004 463 NLTMLDLSYTFLTNL 477 (720)
Q Consensus 463 ~L~~L~l~~~~~~~l 477 (720)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 456666666665544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.76 E-value=0.24 Score=27.97 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=9.2
Q ss_pred CcccEEEeecccCChhhHH
Q 005004 657 PKLTSLFLQSCNIDEEGVE 675 (720)
Q Consensus 657 ~~L~~L~l~~~~i~~~~~~ 675 (720)
++|++|++++|.|+++++.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4556666666665544443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.72 E-value=0.21 Score=28.18 Aligned_cols=23 Identities=43% Similarity=0.398 Sum_probs=14.6
Q ss_pred cCcCCeeecCCCCCchhhHHhhh
Q 005004 7 LRNLEALTLGRGQLGDAFFHALA 29 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~ 29 (720)
+++|+.|++++|.|+.....+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46778888888887777666654
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.19 E-value=0.05 Score=58.07 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=20.9
Q ss_pred cCCcccEEEeecccCChhhHH----HHHhcCCCcceEeccCCc
Q 005004 655 DCPKLTSLFLQSCNIDEEGVE----SAITQCGMLETLDVRFCP 693 (720)
Q Consensus 655 ~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~L~~L~l~~c~ 693 (720)
..+.+++++++.|...++... ..-.+. .++.++++.++
T Consensus 402 ~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 402 SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred hcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 356677777776663333322 222233 67777777765
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.65 E-value=0.18 Score=53.93 Aligned_cols=88 Identities=32% Similarity=0.419 Sum_probs=39.6
Q ss_pred CCCCCeeecCCcccCC-----hhHHHhcccc-ccEEEcCCCCCCChhHHHHHH-hcCCC-CCcceeecCCCccch---HH
Q 005004 461 LQNLTMLDLSYTFLTN-----LEPVFESCLQ-LKVLKLQACKYLTNTSLESLY-KKGSL-PALQELDLSYGTLCQ---SA 529 (720)
Q Consensus 461 ~~~L~~L~l~~~~~~~-----l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~-~~~~~-~~L~~L~l~~~~i~~---~~ 529 (720)
..++++|.+.+|.++. +...+...+. ++++++..|. +.+.....+. .+..+ ..++.++++.|.+.+ ..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 3445555555555442 1113333343 4455555544 4443333221 12223 345555555555543 12
Q ss_pred HHHHHhhCCCCcEEeccCcc
Q 005004 530 IEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 530 ~~~~l~~~~~L~~L~l~~~~ 549 (720)
+...+..++.++.+.+..|+
T Consensus 282 L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHhhhHHHHHhhcccCc
Confidence 33344445555555555554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.26 E-value=0.92 Score=26.09 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=11.9
Q ss_pred CcCCeeecCCCCCchhhHHhh
Q 005004 8 RNLEALTLGRGQLGDAFFHAL 28 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~ 28 (720)
++|+.|+|++|.|+.+-+++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.26 E-value=0.92 Score=26.09 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=11.9
Q ss_pred CcCCeeecCCCCCchhhHHhh
Q 005004 8 RNLEALTLGRGQLGDAFFHAL 28 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~ 28 (720)
++|+.|+|++|.|+.+-+++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.73 E-value=1.3 Score=25.47 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.8
Q ss_pred CCCCCeeecCCcccCChhHH
Q 005004 461 LQNLTMLDLSYTFLTNLEPV 480 (720)
Q Consensus 461 ~~~L~~L~l~~~~~~~l~~~ 480 (720)
+++|+.|++++|++..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35678888888888877663
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.73 E-value=1.3 Score=25.47 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.8
Q ss_pred CCCCCeeecCCcccCChhHH
Q 005004 461 LQNLTMLDLSYTFLTNLEPV 480 (720)
Q Consensus 461 ~~~L~~L~l~~~~~~~l~~~ 480 (720)
+++|+.|++++|++..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35678888888888877663
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.05 E-value=1.9 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=12.3
Q ss_pred CcccEEEeecccCChhhHHH
Q 005004 657 PKLTSLFLQSCNIDEEGVES 676 (720)
Q Consensus 657 ~~L~~L~l~~~~i~~~~~~~ 676 (720)
++|++|++++|.|++++...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 45666666666666555544
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.08 E-value=4.7 Score=23.72 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=14.6
Q ss_pred CCCCEEEecCCCCCchhhHHHHHHh
Q 005004 122 PQLESLDMSNCSCVSDESLREIALS 146 (720)
Q Consensus 122 ~~L~~L~l~~~~~l~~~~~~~~~~~ 146 (720)
++|++|+|++|. +.+.....+++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHH
Confidence 456677777776 666665555533
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.56 E-value=4 Score=43.30 Aligned_cols=81 Identities=23% Similarity=0.221 Sum_probs=37.4
Q ss_pred CCCCeeecCCcccCCh---hHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch------HHHHH
Q 005004 462 QNLTMLDLSYTFLTNL---EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ------SAIEE 532 (720)
Q Consensus 462 ~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~------~~~~~ 532 (720)
+.+..+.+++|++..+ ...-...|+|..|+|++|...- ....+++.++ ...|++|.+.+|.++. +.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~-~~~~el~K~k-~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKI-SSESELDKLK-GLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhh-cchhhhhhhc-CCCHHHeeecCCccccchhhhHHHHHH
Confidence 3444444444444322 2223345566666666552111 0111221222 3346777777776643 23334
Q ss_pred HHhhCCCCcEEe
Q 005004 533 LLAYCTHLTHVS 544 (720)
Q Consensus 533 ~l~~~~~L~~L~ 544 (720)
.-..+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 445677777765
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.79 E-value=5.7 Score=42.16 Aligned_cols=34 Identities=32% Similarity=0.291 Sum_probs=16.5
Q ss_pred hCCCccEEeccccc-----chhhhhhcCCcccEEEeecc
Q 005004 634 ACFNLCFLNLSNCC-----SLETLKLDCPKLTSLFLQSC 667 (720)
Q Consensus 634 ~~~~L~~L~l~~~~-----~L~~l~~~~~~L~~L~l~~~ 667 (720)
..|.+.++.++++. .+.++....|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444445555443 33334444555555555555
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=70.45 E-value=0.18 Score=46.74 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=45.5
Q ss_pred HHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeecc---CCCccEEeccCcchH---HHHhcCCCc
Q 005004 25 FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQLEHLSLKRSNMA---QAVLNCPLL 98 (720)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~---~~~~~l~~L 98 (720)
-..++.+..-+.||++.|++. .+..-+..++.|..|+++.|.+..++.+ ...+.++++..|+.. ..+...+++
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 334555566666666666542 2333344455566666666666555533 233344444455444 455677777
Q ss_pred eEEeecccc
Q 005004 99 HLLDIASCH 107 (720)
Q Consensus 99 ~~L~l~~~~ 107 (720)
++++..+++
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 777777765
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.66 E-value=0.31 Score=45.17 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=55.8
Q ss_pred cccCCCcEEEcccccceeeecc---CCCccEEeccCcchH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCE
Q 005004 53 INHDQLRRLEITKCRVMRVSIR---CPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 126 (720)
Q Consensus 53 ~~l~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~ 126 (720)
....+-+.||++.|++..+..+ ++.|..|+++.|.+. ..+.....++++++..|. .+ ..|.+++..+++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~--~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HS--QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hh--hCCccccccCCcch
Confidence 4467788999999998877654 455666777777665 555666666777777664 33 56777788888888
Q ss_pred EEecCCC
Q 005004 127 LDMSNCS 133 (720)
Q Consensus 127 L~l~~~~ 133 (720)
++..+++
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8887776
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.66 E-value=5 Score=23.14 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=13.5
Q ss_pred CCCCeeecCCcccCChhH
Q 005004 462 QNLTMLDLSYTFLTNLEP 479 (720)
Q Consensus 462 ~~L~~L~l~~~~~~~l~~ 479 (720)
++|++|.+++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888777765
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.19 E-value=7.1 Score=22.57 Aligned_cols=13 Identities=15% Similarity=0.440 Sum_probs=6.4
Q ss_pred CCCcEEEeCCCcc
Q 005004 32 SMLKSLNVNDATL 44 (720)
Q Consensus 32 ~~L~~L~l~~~~l 44 (720)
++|++|++++|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555544
No 94
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=41.96 E-value=17 Score=20.98 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=9.7
Q ss_pred cceEeccCCcCCCchhHHHHHHhCC
Q 005004 684 LETLDVRFCPKICSTSMGRLRAACP 708 (720)
Q Consensus 684 L~~L~l~~c~~l~~~~~~~~~~~~p 708 (720)
|++|.+.+...-.+..++.+.+.||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 3444444432222223444444444
No 95
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=29.12 E-value=61 Score=21.43 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=9.2
Q ss_pred ccccccccceeccCC
Q 005004 364 ASFVPVALQSLNLGI 378 (720)
Q Consensus 364 ~~~~p~~L~~L~~~~ 378 (720)
.+.+|.++++|.+++
T Consensus 29 ~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 29 PGSLPNSLKSLSFGY 43 (44)
T ss_pred CCccCCCceEEEeeC
Confidence 455677776666543
No 96
>PRK09718 hypothetical protein; Validated
Probab=22.89 E-value=1.3e+02 Score=32.07 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=3.6
Q ss_pred ccEEEeccC
Q 005004 308 LKSLVLDNC 316 (720)
Q Consensus 308 L~~L~l~~~ 316 (720)
|+...+.+|
T Consensus 187 LskA~F~gC 195 (512)
T PRK09718 187 IRNSNFDNC 195 (512)
T ss_pred CCCCEEeCc
Confidence 333344443
No 97
>PRK09718 hypothetical protein; Validated
Probab=22.73 E-value=1.5e+02 Score=31.60 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=13.6
Q ss_pred CccEEEeccCCCCceeccccCCceeEeecCC
Q 005004 307 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGC 337 (720)
Q Consensus 307 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~ 337 (720)
.++...+.+|. +....+....++...+.+|
T Consensus 166 ~Lk~V~FsdCn-L~yAnFsgAnLskA~F~gC 195 (512)
T PRK09718 166 ILDTVDFSQSQ-LTHSNFRECQIRNSNFDNC 195 (512)
T ss_pred ccCCcEEeeeE-ecccCCCCCcCCCCEEeCc
Confidence 34444555554 4433444444444444444
Done!