Query 005004
Match_columns 720
No_of_seqs 223 out of 3109
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.4E-45 4.7E-50 422.5 27.8 615 3-693 72-715 (768)
2 3rgz_A Protein brassinosteroid 100.0 4E-43 1.4E-47 402.1 30.4 626 8-716 50-712 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-41 2E-45 381.2 31.0 570 8-699 25-626 (680)
4 3t6q_A CD180 antigen; protein- 100.0 3.1E-38 1E-42 353.9 29.5 495 8-552 33-561 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-39 1.1E-43 362.0 19.2 458 8-548 32-507 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.8E-38 2E-42 356.5 28.4 514 3-552 44-623 (680)
7 3t6q_A CD180 antigen; protein- 100.0 4.6E-38 1.6E-42 352.5 25.7 537 11-703 15-568 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-36 3.7E-41 341.3 16.9 480 2-552 50-559 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-36 1.8E-40 346.8 19.5 462 7-549 23-515 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 1.2E-35 4.1E-40 330.7 21.3 478 8-551 28-531 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-35 1.3E-39 325.0 24.5 196 7-208 4-210 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 7.7E-34 2.6E-38 328.6 16.3 476 2-552 42-561 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-32 4.2E-37 304.7 24.5 461 8-525 26-509 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 1.9E-33 6.4E-38 313.0 15.8 457 3-527 47-532 (570)
15 4g8a_A TOLL-like receptor 4; l 100.0 9.1E-33 3.1E-37 312.0 21.3 192 8-202 52-257 (635)
16 4ecn_A Leucine-rich repeat pro 100.0 4E-33 1.4E-37 316.2 16.4 267 8-317 323-684 (876)
17 4eco_A Uncharacterized protein 100.0 8.1E-33 2.8E-37 309.3 18.7 441 8-552 81-633 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-32 6E-37 301.1 17.7 121 8-133 21-149 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-32 8.1E-37 300.1 14.9 138 11-158 3-148 (520)
20 4eco_A Uncharacterized protein 100.0 8.7E-31 3E-35 292.8 21.9 409 32-551 81-600 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 3E-30 1E-34 291.3 16.8 484 2-552 70-581 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-30 1.1E-34 285.4 15.4 433 8-527 52-511 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 9.1E-30 3.1E-34 288.8 18.8 405 32-526 323-840 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-30 4.6E-35 288.4 10.9 463 7-552 30-511 (562)
25 3ogk_B Coronatine-insensitive 100.0 2.5E-27 8.5E-32 264.8 27.9 436 90-714 67-544 (592)
26 2p1m_B Transport inhibitor res 100.0 1.1E-26 3.7E-31 259.7 30.6 437 90-711 60-534 (594)
27 3v47_A TOLL-like receptor 5B a 100.0 2.9E-27 9.8E-32 255.1 22.8 193 8-205 30-250 (455)
28 3bz5_A Internalin-J, INLJ; leu 99.9 6.6E-28 2.3E-32 257.6 13.5 164 3-205 37-202 (457)
29 1jl5_A Outer protein YOPM; leu 99.9 5.8E-28 2E-32 257.9 12.6 406 5-550 8-428 (454)
30 1z7x_W Ribonuclease inhibitor; 99.9 7.7E-27 2.6E-31 252.3 20.0 410 7-543 2-460 (461)
31 3v47_A TOLL-like receptor 5B a 99.9 2.2E-27 7.6E-32 255.9 15.1 383 35-526 13-408 (455)
32 1o6v_A Internalin A; bacterial 99.9 5.7E-26 1.9E-30 245.0 26.1 342 6-527 44-389 (466)
33 3ogk_B Coronatine-insensitive 99.9 1.8E-26 6.2E-31 257.7 22.7 124 30-157 110-252 (592)
34 1o6v_A Internalin A; bacterial 99.9 1.3E-25 4.5E-30 242.2 26.1 127 407-550 261-387 (466)
35 2p1m_B Transport inhibitor res 99.9 6.9E-26 2.4E-30 253.2 21.0 432 25-549 59-542 (594)
36 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-25 7.8E-30 240.7 20.9 392 77-549 4-438 (461)
37 1jl5_A Outer protein YOPM; leu 99.9 7.1E-26 2.4E-30 241.7 12.1 386 2-527 28-430 (454)
38 4fmz_A Internalin; leucine ric 99.9 6.2E-24 2.1E-28 220.1 26.4 57 146-205 130-188 (347)
39 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-25 1.5E-29 235.9 18.0 212 21-317 31-244 (457)
40 4fmz_A Internalin; leucine ric 99.9 1.6E-23 5.4E-28 217.1 25.1 126 409-549 219-344 (347)
41 3o6n_A APL1; leucine-rich repe 99.9 1E-23 3.6E-28 222.0 20.8 121 407-538 244-364 (390)
42 2id5_A Lingo-1, leucine rich r 99.9 4.9E-24 1.7E-28 231.0 16.1 286 8-317 32-331 (477)
43 3o6n_A APL1; leucine-rich repe 99.9 1.5E-23 5E-28 220.9 18.5 65 7-71 44-108 (390)
44 3oja_B Anopheles plasmodium-re 99.9 2.9E-23 9.8E-28 230.8 20.6 108 7-133 50-158 (597)
45 3oja_B Anopheles plasmodium-re 99.9 1.4E-22 4.8E-27 225.2 20.5 118 407-535 250-367 (597)
46 2id5_A Lingo-1, leucine rich r 99.9 5.9E-23 2E-27 222.5 16.3 161 376-551 172-333 (477)
47 1xku_A Decorin; proteoglycan, 99.9 2.7E-21 9.1E-26 198.6 16.9 190 9-208 32-230 (330)
48 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-22 7.1E-27 204.5 6.7 246 8-318 50-303 (313)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-20 3.7E-25 194.1 16.6 292 149-549 34-331 (332)
50 1xku_A Decorin; proteoglycan, 99.8 2.4E-20 8.3E-25 191.4 18.3 292 149-548 32-329 (330)
51 2ft3_A Biglycan; proteoglycan, 99.8 3E-21 1E-25 198.3 11.1 283 9-316 34-330 (332)
52 2z80_A TOLL-like receptor 2, v 99.8 2.1E-20 7.2E-25 193.7 14.2 272 6-318 29-313 (353)
53 1ogq_A PGIP-2, polygalacturona 99.8 4.4E-21 1.5E-25 194.8 7.8 205 2-212 70-286 (313)
54 4fcg_A Uncharacterized protein 99.8 2.8E-20 9.6E-25 189.9 9.4 204 7-219 80-302 (328)
55 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-20 6.6E-25 190.6 5.7 192 5-205 31-225 (317)
56 2ast_B S-phase kinase-associat 99.8 4.7E-18 1.6E-22 175.0 19.1 193 9-205 48-258 (336)
57 4fcg_A Uncharacterized protein 99.8 2.3E-19 7.9E-24 183.1 8.9 195 2-204 98-311 (328)
58 2z66_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 180.7 9.8 194 8-206 28-235 (306)
59 3o53_A Protein LRIM1, AGAP0063 99.8 3.1E-19 1.1E-23 181.7 9.2 248 243-553 30-277 (317)
60 3zyi_A Leucine-rich repeat-con 99.8 6.6E-19 2.2E-23 188.9 11.7 218 8-261 75-304 (452)
61 2z80_A TOLL-like receptor 2, v 99.8 4.7E-18 1.6E-22 176.0 15.6 163 376-549 120-288 (353)
62 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5E-23 185.5 11.6 219 8-261 64-293 (440)
63 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.9E-23 187.9 10.7 191 6-205 32-225 (487)
64 2ca6_A RAN GTPase-activating p 99.8 5.5E-18 1.9E-22 177.9 15.5 203 3-208 27-288 (386)
65 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.2E-23 172.9 11.2 198 7-209 31-240 (285)
66 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 174.9 11.1 187 11-204 10-209 (306)
67 2ca6_A RAN GTPase-activating p 99.7 2.2E-17 7.5E-22 173.2 18.9 259 401-711 22-333 (386)
68 2z62_A TOLL-like receptor 4, v 99.7 1.7E-18 5.9E-23 172.6 9.3 197 8-208 28-238 (276)
69 2ast_B S-phase kinase-associat 99.7 6.6E-18 2.2E-22 173.9 13.7 196 8-204 70-282 (336)
70 3zyj_A Leucine-rich repeat-con 99.7 3.5E-18 1.2E-22 182.5 11.6 199 2-207 82-292 (440)
71 1ozn_A Reticulon 4 receptor; N 99.7 9E-18 3.1E-22 168.3 13.5 135 407-549 101-236 (285)
72 3zyi_A Leucine-rich repeat-con 99.7 6.2E-18 2.1E-22 181.3 12.9 158 376-550 143-302 (452)
73 1wwl_A Monocyte differentiatio 99.7 5.6E-18 1.9E-22 171.9 9.7 148 30-178 93-262 (312)
74 3goz_A Leucine-rich repeat-con 99.7 2.4E-17 8.3E-22 171.1 13.8 146 12-159 2-178 (362)
75 3g06_A SSPH2 (leucine-rich rep 99.7 3.3E-17 1.1E-21 180.0 14.5 254 8-317 40-295 (622)
76 3oja_A Leucine-rich immune mol 99.7 1.7E-17 5.9E-22 178.7 11.6 241 244-547 31-271 (487)
77 1wwl_A Monocyte differentiatio 99.7 5.8E-18 2E-22 171.8 7.4 195 6-208 93-310 (312)
78 3g06_A SSPH2 (leucine-rich rep 99.7 5.4E-16 1.8E-20 170.4 20.0 98 411-527 201-298 (622)
79 3goz_A Leucine-rich repeat-con 99.7 6.6E-17 2.3E-21 167.8 10.9 196 7-205 21-264 (362)
80 1h6u_A Internalin H; cell adhe 99.7 1.2E-16 4E-21 161.6 12.0 188 4-207 37-230 (308)
81 2xwt_C Thyrotropin receptor; s 99.7 4E-17 1.4E-21 158.8 5.9 196 9-225 32-236 (239)
82 2o6q_A Variable lymphocyte rec 99.6 4.4E-16 1.5E-20 154.4 10.2 192 9-208 17-219 (270)
83 3rfs_A Internalin B, repeat mo 99.6 2.7E-16 9.1E-21 156.1 8.1 167 4-178 37-214 (272)
84 4glp_A Monocyte differentiatio 99.6 1.7E-16 5.9E-21 160.8 6.8 213 6-223 62-302 (310)
85 1p9a_G Platelet glycoprotein I 99.6 4.4E-16 1.5E-20 155.7 9.3 195 3-207 5-208 (290)
86 4glp_A Monocyte differentiatio 99.6 9.4E-16 3.2E-20 155.4 11.8 216 31-261 63-308 (310)
87 2z62_A TOLL-like receptor 4, v 99.6 2.8E-15 9.7E-20 149.2 13.7 88 407-496 120-211 (276)
88 1h6u_A Internalin H; cell adhe 99.6 3.3E-15 1.1E-19 150.9 13.3 203 12-261 23-231 (308)
89 3rfs_A Internalin B, repeat mo 99.6 2.2E-16 7.7E-21 156.6 4.0 188 8-204 19-215 (272)
90 2o6q_A Variable lymphocyte rec 99.6 1.5E-15 5E-20 150.6 9.8 167 8-179 37-215 (270)
91 1p9a_G Platelet glycoprotein I 99.6 1.1E-14 3.6E-19 145.6 15.5 201 243-525 6-207 (290)
92 2xwt_C Thyrotropin receptor; s 99.6 2.5E-15 8.5E-20 146.1 8.3 155 376-550 76-238 (239)
93 4ay9_X Follicle-stimulating ho 99.5 4.4E-15 1.5E-19 153.1 6.3 213 11-229 12-237 (350)
94 1h6t_A Internalin B; cell adhe 99.5 3E-14 1E-18 142.4 11.3 170 5-208 43-214 (291)
95 3m19_A Variable lymphocyte rec 99.5 1.2E-14 4E-19 142.3 7.5 168 8-184 14-193 (251)
96 1h6t_A Internalin B; cell adhe 99.5 4.8E-14 1.6E-18 141.0 8.3 187 12-241 28-215 (291)
97 1m9s_A Internalin B; cell inva 99.5 5.7E-14 1.9E-18 154.2 9.2 172 4-209 39-212 (605)
98 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 135.1 9.9 156 380-550 35-191 (251)
99 2o6s_A Variable lymphocyte rec 99.4 8.4E-14 2.9E-18 132.0 6.7 124 7-133 27-159 (208)
100 1m9s_A Internalin B; cell inva 99.4 1.3E-13 4.4E-18 151.4 7.9 190 9-241 22-212 (605)
101 3cvr_A Invasion plasmid antige 99.4 4.8E-14 1.7E-18 152.8 4.4 184 9-217 60-253 (571)
102 4ezg_A Putative uncharacterize 99.4 4.1E-13 1.4E-17 125.9 8.8 140 31-178 43-190 (197)
103 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 133.2 7.5 158 7-178 18-181 (263)
104 4ezg_A Putative uncharacterize 99.4 4.2E-13 1.4E-17 125.8 8.0 152 376-549 40-192 (197)
105 4ay9_X Follicle-stimulating ho 99.4 8.6E-13 2.9E-17 135.9 10.8 102 412-523 155-256 (350)
106 1dce_A Protein (RAB geranylger 99.4 8.4E-15 2.9E-19 159.8 -5.7 188 4-210 345-549 (567)
107 2je0_A Acidic leucine-rich nuc 99.4 1.7E-12 5.7E-17 115.6 10.0 130 7-156 16-148 (149)
108 2xot_A Amphoterin-induced prot 99.4 9.4E-13 3.2E-17 136.2 8.9 97 10-106 41-146 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.4 6.2E-13 2.1E-17 126.8 7.0 141 401-550 24-165 (220)
110 1xeu_A Internalin C; cellular 99.4 3.1E-13 1.1E-17 132.8 4.7 165 30-209 17-187 (263)
111 3cvr_A Invasion plasmid antige 99.3 6.3E-13 2.2E-17 144.1 7.3 171 7-195 79-255 (571)
112 2v9t_B SLIT homolog 2 protein 99.3 1E-12 3.5E-17 125.3 7.1 131 9-159 33-163 (220)
113 2je0_A Acidic leucine-rich nuc 99.3 2.8E-12 9.5E-17 114.2 9.1 130 410-547 16-149 (149)
114 2v9t_B SLIT homolog 2 protein 99.3 1E-12 3.5E-17 125.3 6.6 132 411-550 32-164 (220)
115 3sb4_A Hypothetical leucine ri 99.3 2.7E-12 9.3E-17 131.0 9.8 191 7-203 48-283 (329)
116 2o6s_A Variable lymphocyte rec 99.3 4.2E-13 1.4E-17 127.1 3.5 177 11-219 10-190 (208)
117 2ell_A Acidic leucine-rich nuc 99.3 2.7E-12 9.4E-17 116.9 8.5 126 32-159 24-158 (168)
118 3e6j_A Variable lymphocyte rec 99.3 1.3E-12 4.4E-17 125.6 6.3 117 11-133 22-146 (229)
119 3sb4_A Hypothetical leucine ri 99.3 1.3E-12 4.3E-17 133.4 6.6 124 411-544 202-327 (329)
120 2ell_A Acidic leucine-rich nuc 99.3 3.1E-12 1.1E-16 116.4 7.4 133 409-550 22-159 (168)
121 4fs7_A Uncharacterized protein 99.3 1.1E-11 3.7E-16 130.0 11.3 59 242-315 271-329 (394)
122 1ds9_A Outer arm dynein; leuci 99.3 3.5E-13 1.2E-17 126.5 -0.9 148 3-154 13-180 (198)
123 2xot_A Amphoterin-induced prot 99.3 5.3E-12 1.8E-16 130.5 7.6 173 11-207 21-202 (361)
124 2v70_A SLIT-2, SLIT homolog 2 99.3 5.1E-12 1.7E-16 120.5 6.7 142 11-159 14-164 (220)
125 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4E-16 113.6 7.3 100 3-106 14-123 (176)
126 3e6j_A Variable lymphocyte rec 99.2 5.1E-11 1.8E-15 114.3 10.6 133 380-526 40-172 (229)
127 1dce_A Protein (RAB geranylger 99.2 5E-13 1.7E-17 145.8 -5.2 123 412-545 442-567 (567)
128 3un9_A NLR family member X1; l 99.2 5.9E-11 2E-15 122.4 10.2 166 7-193 71-262 (372)
129 4fs7_A Uncharacterized protein 99.1 1E-10 3.5E-15 122.5 10.5 101 406-518 292-393 (394)
130 1ds9_A Outer arm dynein; leuci 99.1 1E-11 3.5E-16 116.4 1.7 155 377-544 15-180 (198)
131 1a9n_A U2A', U2A'; complex (nu 99.1 6.9E-11 2.4E-15 108.3 7.1 132 409-549 17-151 (176)
132 4b8c_D Glucose-repressible alc 99.1 1.9E-11 6.4E-16 137.8 2.9 131 24-159 216-352 (727)
133 4fdw_A Leucine rich hypothetic 99.1 5.2E-10 1.8E-14 116.5 12.4 170 7-205 112-282 (401)
134 4b8c_D Glucose-repressible alc 99.1 2.2E-11 7.6E-16 137.2 1.9 117 91-214 242-361 (727)
135 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.8E-15 107.8 6.7 118 401-526 21-139 (192)
136 3un9_A NLR family member X1; l 99.0 2.4E-10 8E-15 117.9 8.3 137 410-549 100-250 (372)
137 4fdw_A Leucine rich hypothetic 99.0 3.8E-10 1.3E-14 117.4 9.5 233 3-287 131-379 (401)
138 1w8a_A SLIT protein; signaling 99.0 1.2E-10 4.2E-15 108.3 4.2 128 414-551 11-139 (192)
139 2wfh_A SLIT homolog 2 protein 99.0 4.7E-10 1.6E-14 104.2 8.1 115 401-525 23-138 (193)
140 3e4g_A ATP synthase subunit S, 99.0 4.7E-10 1.6E-14 100.0 7.2 103 591-711 62-170 (176)
141 2wfh_A SLIT homolog 2 protein 99.0 5.3E-10 1.8E-14 103.9 7.8 117 11-134 13-138 (193)
142 2o6r_A Variable lymphocyte rec 99.0 7.3E-10 2.5E-14 101.6 7.4 120 10-136 9-137 (177)
143 2o6r_A Variable lymphocyte rec 98.9 9.6E-10 3.3E-14 100.8 5.8 129 382-527 9-138 (177)
144 4gt6_A Cell surface protein; l 98.9 2E-08 6.9E-13 104.9 16.0 82 433-524 307-389 (394)
145 4gt6_A Cell surface protein; l 98.8 2.1E-08 7.1E-13 104.9 12.4 280 3-316 58-367 (394)
146 3g39_A Variable lymphocyte rec 98.7 1.2E-08 4.1E-13 92.5 7.1 96 9-107 10-113 (170)
147 3g39_A Variable lymphocyte rec 98.7 9.2E-09 3.1E-13 93.3 6.2 95 33-133 10-113 (170)
148 2ra8_A Uncharacterized protein 98.7 6.5E-08 2.2E-12 98.6 12.9 195 8-205 107-341 (362)
149 2r9u_A Variable lymphocyte rec 98.7 1.4E-08 4.7E-13 92.4 7.1 94 11-107 15-116 (174)
150 2r9u_A Variable lymphocyte rec 98.7 1.2E-08 4.2E-13 92.7 6.2 94 34-133 14-116 (174)
151 3e4g_A ATP synthase subunit S, 98.6 6.8E-08 2.3E-12 86.0 8.1 89 411-523 61-149 (176)
152 2ra8_A Uncharacterized protein 98.6 1E-07 3.5E-12 97.1 9.0 140 403-549 164-318 (362)
153 1io0_A Tropomodulin; LRR prote 98.6 5.1E-07 1.7E-11 82.8 12.1 89 460-549 63-162 (185)
154 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.5E-12 97.0 7.1 93 12-107 12-114 (347)
155 1io0_A Tropomodulin; LRR prote 98.4 6.4E-07 2.2E-11 82.2 8.5 124 403-528 28-166 (185)
156 4h09_A Hypothetical leucine ri 98.4 4.7E-06 1.6E-10 86.4 15.7 34 168-203 45-78 (379)
157 4h09_A Hypothetical leucine ri 98.3 2.1E-06 7E-11 89.2 10.9 79 3-85 41-122 (379)
158 2ifg_A High affinity nerve gro 98.3 9.2E-07 3.2E-11 90.6 7.0 93 36-133 12-114 (347)
159 3rw6_A Nuclear RNA export fact 98.0 2.5E-06 8.5E-11 82.2 4.4 109 4-129 137-258 (267)
160 1pgv_A TMD-1, tropomodulin TMD 97.7 0.00059 2E-08 61.9 13.6 120 429-549 33-168 (197)
161 3rw6_A Nuclear RNA export fact 97.7 7.7E-05 2.6E-09 71.8 8.1 84 459-546 167-259 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0017 6E-08 58.8 8.5 123 405-527 35-171 (197)
163 3rfe_A Platelet glycoprotein I 95.0 0.011 3.9E-07 49.8 2.9 56 648-704 19-77 (130)
164 3rfe_A Platelet glycoprotein I 92.3 0.085 2.9E-06 44.3 3.3 57 11-69 11-68 (130)
165 2lz0_A Uncharacterized protein 60.5 4.6 0.00016 31.6 2.4 46 19-65 7-52 (100)
166 2lz0_A Uncharacterized protein 54.7 9.3 0.00032 29.9 3.3 40 2-42 14-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-45 Score=422.47 Aligned_cols=615 Identities=18% Similarity=0.158 Sum_probs=361.1
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccc--cccccCCCcEEEcccccceeee-----ccC
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE--IPINHDQLRRLEITKCRVMRVS-----IRC 75 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~~~~~~-----~~~ 75 (720)
+|.++++|+.++++.+.+.. .+..|..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.... ..+
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred hHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 46677778888887776642 456788888888888888888777777 7888888888888888875321 467
Q ss_pred CCccEEeccCcchH----HH---HhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC
Q 005004 76 PQLEHLSLKRSNMA----QA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA 148 (720)
Q Consensus 76 ~~L~~L~l~~~~~~----~~---~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~ 148 (720)
++|++|++++|.+. .. +.++++|++|++++|. ++. .. .+..+++|++|++++|. +....+. +. .++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~--~~~~l~~L~~L~Ls~n~-l~~~~~~-l~-~l~ 223 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISG-DV--DVSRCVNLEFLDVSSNN-FSTGIPF-LG-DCS 223 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EES-CC--BCTTCTTCCEEECCSSC-CCSCCCB-CT-TCC
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccc-cC--CcccCCcCCEEECcCCc-CCCCCcc-cc-cCC
Confidence 88888888888775 22 6788888888888885 442 11 12778888888888887 5443333 43 788
Q ss_pred ccceeeccCCC---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccc
Q 005004 149 NLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHC 225 (720)
Q Consensus 149 ~L~~L~l~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~ 225 (720)
+|++|++++|. .+|..+.++++|++|+++++ .+.+..+.. .+++|++|++++|.+.+.+|..+.. .|
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~-------~~ 293 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG-------AC 293 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCT-------TC
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCCCEEECcCCccCCccCHHHHh-------hc
Confidence 88888888886 45667888888888888884 555443332 6788889999888877776654321 12
Q ss_pred cccccchhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCC
Q 005004 226 RKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 302 (720)
Q Consensus 226 ~~l~~~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 302 (720)
++++.++++++.+... .+.++++|+++++++|.+.+..+.. ....+++|++|++++ +.+++..+..+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~------~l~~l~~L~~L~Ls~-n~l~~~~p~~l--- 363 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD------TLLKMRGLKVLDLSF-NEFSGELPESL--- 363 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH------HHTTCTTCCEEECCS-SEEEECCCTTH---
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH------HHhcCCCCCEEeCcC-CccCccccHHH---
Confidence 2333344444444322 5778899999999999887543322 112458999999999 57776666655
Q ss_pred CCCC-CccEEEeccCCCCceeccccCCceeEeecCCCcccccc-ccCCcccEEeccCCCccccccccccccceeccCCCC
Q 005004 303 GGCP-MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE-LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICP 380 (720)
Q Consensus 303 ~~~~-~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~-~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~ 380 (720)
..++ +|++|++++|.-...++. .+. ..+++|+++++++|.-.+ .+|.. +.+++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~-----------------~~~~~~~~~L~~L~L~~n~l~~---~~p~~-----l~~l~ 418 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILP-----------------NLCQNPKNTLQELYLQNNGFTG---KIPPT-----LSNCS 418 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCT-----------------TTTCSTTCCCCEEECCSSEEEE---ECCGG-----GGGCT
T ss_pred HhhhcCCcEEEccCCCcCCCcCh-----------------hhhhcccCCccEEECCCCcccc---ccCHH-----HhcCC
Confidence 4455 899999998852111110 000 013455666666553221 22332 45566
Q ss_pred CCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhc
Q 005004 381 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 460 (720)
Q Consensus 381 ~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 460 (720)
+|+.+++++|.++ +.+|..+..+++|+.|++++|. +. ..++..+..+++|++|++++|.+.... +..+..
T Consensus 419 ~L~~L~Ls~N~l~-------~~~p~~l~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~ 488 (768)
T 3rgz_A 419 ELVSLHLSFNYLS-------GTIPSSLGSLSKLRDLKLWLNM-LE-GEIPQELMYVKTLETLILDFNDLTGEI-PSGLSN 488 (768)
T ss_dssp TCCEEECCSSEEE-------SCCCGGGGGCTTCCEEECCSSC-CC-SCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGG
T ss_pred CCCEEECcCCccc-------CcccHHHhcCCCCCEEECCCCc-cc-CcCCHHHcCCCCceEEEecCCcccCcC-CHHHhc
Confidence 6666666666654 4566666666666666666663 22 124455566666666666666655433 445666
Q ss_pred CCCCCeeecCCcccCC-hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCC
Q 005004 461 LQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 539 (720)
Q Consensus 461 ~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~ 539 (720)
+++|++|++++|++.+ +|..+..+++|+.|++++|+ +++..+..+ ..+++|+.|++++|++++ .+|..+.....
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l---~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~ 563 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS-FSGNIPAEL---GDCRSLIWLDLNTNLFNG-TIPAAMFKQSG 563 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CEEECCGGG---GGCTTCCEEECCSSEEES-BCCGGGGTTTT
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc-ccCcCCHHH---cCCCCCCEEECCCCccCC-cCChHHhcccc
Confidence 6666666666666663 55566666666666666665 544444443 456666666666666654 34444444444
Q ss_pred CcEEeccCccCcccccccccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCCccccCCccE
Q 005004 540 LTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSS 619 (720)
Q Consensus 540 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~L~~ 619 (720)
+..+.+........+..............+....+.. .........+..+++.. ..+.....+.+..+++|+.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~l~~-~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR------SEQLNRLSTRNPCNITS-RVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC------GGGGGGGGGTCCSCTTS-CEEEEECCCSCSSSBCCCE
T ss_pred hhhhhcccccccccccccccccccccccccccccccc------chhhhcccccccccccc-ceecccCchhhhccccccE
Confidence 4333333221111110000000000000000000000 00000000111111110 0111111122556667777
Q ss_pred EEcCCCc---ChHHHHhhCCCccEEecccccchhhhh---hcCCcccEEEeecccCChhhHHHHHhcCCCcceEeccCCc
Q 005004 620 LNLSLSA---NLKEVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCP 693 (720)
Q Consensus 620 L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~L~~l~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~c~ 693 (720)
|+++++. .++.....+++|+.|++++|..-..++ ..+++|++|++++|.++ ..+|..+..+++|+.|++++|+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSSE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECcCCc
Confidence 7777543 344444566777777777765333333 23566777777777765 4556666777777777777764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-43 Score=402.07 Aligned_cols=626 Identities=18% Similarity=0.173 Sum_probs=442.6
Q ss_pred CcCCeeecCCCCCchh---hHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEccccccee-ee-----ccCCCc
Q 005004 8 RNLEALTLGRGQLGDA---FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VS-----IRCPQL 78 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~-----~~~~~L 78 (720)
.+++.|+|+++.+.+. ++.++..+++|+.++++.+.+. .+|+.+..+++|++|++++|.+.. ++ +++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 5789999999999987 8889999999999999988763 355778999999999999999874 22 469999
Q ss_pred cEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHH---hhcCCCCCEEEecCCCCCchhhHHHHHHhcCcc
Q 005004 79 EHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLA---ATSCPQLESLDMSNCSCVSDESLREIALSCANL 150 (720)
Q Consensus 79 ~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 150 (720)
++|++++|.+. ..+.++++|++|++++|. ++. ..+.. +.++++|++|++++|. +.+..+. ..+++|
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~l~~L 202 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISG-ANVVGWVLSDGCGELKHLAISGNK-ISGDVDV---SRCVNL 202 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEE-ETHHHHHHTTCCTTCCEEECCSSE-EESCCBC---TTCTTC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCC-cCChhhhhhccCCCCCEEECCCCc-ccccCCc---ccCCcC
Confidence 99999999876 223689999999999996 663 23444 7899999999999997 4433322 389999
Q ss_pred ceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccccccc-ccccccceecccccc
Q 005004 151 RILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRK 227 (720)
Q Consensus 151 ~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~L~~l~~~~~~~ 227 (720)
++|++++|. ...+.++++++|++|++++ +.+++..+..+..+++|++|++++|.+.+.+|. .+++|+++++.
T Consensus 203 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~---- 277 (768)
T 3rgz_A 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISG-NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA---- 277 (768)
T ss_dssp CEEECCSSCCCSCCCBCTTCCSCCEEECCS-SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC----
T ss_pred CEEECcCCcCCCCCcccccCCCCCEEECcC-CcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc----
Confidence 999999997 3333488999999999999 588888999999999999999999988776554 23445554444
Q ss_pred cccchhhhcccce-e--ec-cCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhh-hcCC
Q 005004 228 FADLNLRAMMLSS-I--MV-SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV-FSDG 302 (720)
Q Consensus 228 l~~~~l~~~~l~~-l--~~-~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~ 302 (720)
++.+.. + .+ ..+++|+++++++|.+++..+..+.. +++|++|++++ +.+++..+.. +
T Consensus 278 -------~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-------l~~L~~L~L~~-n~l~~~ip~~~l--- 339 (768)
T 3rgz_A 278 -------ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-------CSLLESLALSS-NNFSGELPMDTL--- 339 (768)
T ss_dssp -------SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-------CTTCCEEECCS-SEEEEECCHHHH---
T ss_pred -------CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-------CCCccEEECCC-CcccCcCCHHHH---
Confidence 443331 1 23 33589999999999988765554443 48999999999 5777554433 5
Q ss_pred CCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccC-CcccEEeccCCCccccccccccccceeccCCCCC
Q 005004 303 GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC-PILEKVCLDGCDHIESASFVPVALQSLNLGICPK 381 (720)
Q Consensus 303 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~-~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~ 381 (720)
..+++|++|++++|.-...++.. + ..+ ++|+.+++++|.-.+ .+|..+ ....+++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~-----------------l-~~l~~~L~~L~Ls~N~l~~---~~~~~~---~~~~~~~ 395 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPES-----------------L-TNLSASLLTLDLSSNNFSG---PILPNL---CQNPKNT 395 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTT-----------------H-HHHTTTCSEEECCSSEEEE---ECCTTT---TCSTTCC
T ss_pred hcCCCCCEEeCcCCccCccccHH-----------------H-HhhhcCCcEEEccCCCcCC---CcChhh---hhcccCC
Confidence 68889999999988621122210 1 122 378888888875322 223321 1122778
Q ss_pred CcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcC
Q 005004 382 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 461 (720)
Q Consensus 382 L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 461 (720)
|+.+++++|.++ +.+|..+..+++|+.|++++| .+.. .++..+..+++|++|++++|.+.... +..+..+
T Consensus 396 L~~L~L~~n~l~-------~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l 465 (768)
T 3rgz_A 396 LQELYLQNNGFT-------GKIPPTLSNCSELVSLHLSFN-YLSG-TIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYV 465 (768)
T ss_dssp CCEEECCSSEEE-------EECCGGGGGCTTCCEEECCSS-EEES-CCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGC
T ss_pred ccEEECCCCccc-------cccCHHHhcCCCCCEEECcCC-cccC-cccHHHhcCCCCCEEECCCCcccCcC-CHHHcCC
Confidence 999999999885 678889999999999999998 4432 36677889999999999999987654 6778899
Q ss_pred CCCCeeecCCcccCC-hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCC
Q 005004 462 QNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHL 540 (720)
Q Consensus 462 ~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L 540 (720)
++|++|++++|.+.+ +|..+..+++|+.|++++|+ +++..+.++ +.+++|+.|++++|++++ .++..+..+++|
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~---~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L 540 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWI---GRLENLAILKLSNNSFSG-NIPAELGDCRSL 540 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG---GGCTTCCEEECCSSCCEE-ECCGGGGGCTTC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHH---hcCCCCCEEECCCCcccC-cCCHHHcCCCCC
Confidence 999999999999995 67799999999999999988 776666666 678999999999999987 677888999999
Q ss_pred cEEeccCccCcccccccccCCCCCCCCccccccccCCCccc--ccccccc--hhccccccccCCCCccccCcCCccccCC
Q 005004 541 THVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENI--HESIDQP--NRLLQNLNCVGCPNIRKVFIPPQARCFH 616 (720)
Q Consensus 541 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~--~~~L~~l~l~~c~~l~~~~~~~~~~~~~ 616 (720)
+.|++++|+....++.. ................... ....... ...-..+.+.+.. ...+..+..
T Consensus 541 ~~L~Ls~N~l~g~ip~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 609 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAA-----MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR------SEQLNRLST 609 (768)
T ss_dssp CEEECCSSEEESBCCGG-----GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC------GGGGGGGGG
T ss_pred CEEECCCCccCCcCChH-----Hhcccchhhhhcccccccccccccccccccccccccccccccc------chhhhcccc
Confidence 99999999754433221 1111111110000000000 0000000 0000000011100 001122222
Q ss_pred ccEEEcCCC---cChHHHHhhCCCccEEecccccchhhhh---hcCCcccEEEeecccCChhhHHHHHhcCCCcceEecc
Q 005004 617 LSSLNLSLS---ANLKEVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVR 690 (720)
Q Consensus 617 L~~L~l~~~---~~l~~~~~~~~~L~~L~l~~~~~L~~l~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 690 (720)
+..+++... +.++.....+++|+.|+++++..-..++ ..+++|+.|++++|.++ ..+|..+.++++|+.||++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECC
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECC
Confidence 222222211 1112223357899999999997444444 35799999999999997 6788889999999999999
Q ss_pred CCcCCCchhHHHHHHhCCCcceeecc
Q 005004 691 FCPKICSTSMGRLRAACPSLKRIFSS 716 (720)
Q Consensus 691 ~c~~l~~~~~~~~~~~~p~l~~i~~~ 716 (720)
+|. ++......+ ..++.|+.+-.+
T Consensus 689 ~N~-l~g~ip~~l-~~l~~L~~L~ls 712 (768)
T 3rgz_A 689 SNK-LDGRIPQAM-SALTMLTEIDLS 712 (768)
T ss_dssp SSC-CEECCCGGG-GGCCCCSEEECC
T ss_pred CCc-ccCcCChHH-hCCCCCCEEECc
Confidence 995 544333333 567777766543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-41 Score=381.24 Aligned_cols=570 Identities=20% Similarity=0.148 Sum_probs=376.0
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l 83 (720)
+++++|++++|.++++.+.+|.++++|++|++++|.+.+..|..+.++++|++|++++|.+..++. ++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999999999888899999999999999999988778888899999999999999987763 5899999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHH-HhcCccceeeccCC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIA-LSCANLRILNSSYC 158 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~ 158 (720)
++|.+. ..+.++++|++|++++|. ++. ..+..+.++++|++|++++|. +....+..+. ..+++|+.|++++|
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNG-LSS-TKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSC-CSC-CCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCccCccChhHccccCCCCEEECCCCc-ccc-cCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence 998776 457889999999999985 552 234567789999999999987 6655555543 14588999999988
Q ss_pred C---CCccccccCCcCcEEeccCCCCCchhhHHHhh---ccccccEEeccCCccccccccccccccceecccccccccch
Q 005004 159 P---NISLESVRLPMLTVLQLHSCEGITSASMAAIS---HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLN 232 (720)
Q Consensus 159 ~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~ 232 (720)
. ..+..+..+++|+.+++.++ .+.......+. ..++|++|++++|...+..+..+
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~------------------ 242 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF------------------ 242 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT------------------
T ss_pred cccccChhhhhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccChhHh------------------
Confidence 6 33445777888899988874 55544443332 34788888888886655444332
Q ss_pred hhhcccceeeccCC--CcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccE
Q 005004 233 LRAMMLSSIMVSNC--AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKS 310 (720)
Q Consensus 233 l~~~~l~~l~~~~~--~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~ 310 (720)
..+ ++|+++++++|.+++..+..+. .+++|++|++++ +.+++..+..+ ..+++|++
T Consensus 243 -----------~~l~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~L~~ 300 (680)
T 1ziw_A 243 -----------LGLKWTNLTMLDLSYNNLNVVGNDSFA-------WLPQLEYFFLEY-NNIQHLFSHSL---HGLFNVRY 300 (680)
T ss_dssp -----------GGGGGSCCCEEECTTSCCCEECTTTTT-------TCTTCCEEECCS-CCBSEECTTTT---TTCTTCCE
T ss_pred -----------hccCcCCCCEEECCCCCcCccCccccc-------CcccccEeeCCC-CccCccChhhh---cCCCCccE
Confidence 222 2477777777777665433332 347888888887 57777665555 67788888
Q ss_pred EEeccCCCCceeccccCCceeEeecCCCcccccc-ccCCcccEEeccCCCccccccccccccceeccCCCCCCccccccc
Q 005004 311 LVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE-LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 389 (720)
Q Consensus 311 L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~-~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~ 389 (720)
|+++++..-..++ ....+.+.... ..+++|++++++++.-.. ..|. .+.++++|+.+++++
T Consensus 301 L~L~~~~~~~~~~----------~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~---~~~~-----~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 301 LNLKRSFTKQSIS----------LASLPKIDDFSFQWLKCLEHLNMEDNDIPG---IKSN-----MFTGLINLKYLSLSN 362 (680)
T ss_dssp EECTTCBCCC----------------CCEECTTTTTTCTTCCEEECCSCCBCC---CCTT-----TTTTCTTCCEEECTT
T ss_pred Eeccchhhhcccc----------cccccccChhhcccCCCCCEEECCCCccCC---CChh-----HhccccCCcEEECCC
Confidence 8887653211110 01111111111 145666667666653211 1111 256677777777776
Q ss_pred ceeeeeeecCcccccc-ccc--CCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCe
Q 005004 390 LHMVVLELKGCGVLSD-AYI--NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 466 (720)
Q Consensus 390 ~~l~~l~~~~~~~~~~-~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 466 (720)
|.++. ..++. .+. ..++|+.|++++| .+... .+..+..+++|++|++++|.+........+..+++|++
T Consensus 363 n~~~~------~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 434 (680)
T 1ziw_A 363 SFTSL------RTLTNETFVSLAHSPLHILNLTKN-KISKI-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434 (680)
T ss_dssp CBSCC------CEECTTTTGGGTTSCCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCE
T ss_pred Cchhh------hhcchhhhcccccCcCceEECCCC-CCCeE-ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccE
Confidence 65321 11111 111 2357788888877 34332 34456677888888888877654332356777788888
Q ss_pred eecCCcccCChhH-HHhccccccEEEcCCCCCCChh--HHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEE
Q 005004 467 LDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNT--SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHV 543 (720)
Q Consensus 467 L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L 543 (720)
|++++|.+.+++. .|..+++|+.|++++|. ++.. .+..+ ..+++|+.|++++|++++ ..+..+..+++|+.|
T Consensus 435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~---~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPF---QPLRNLTILDLSNNNIAN-INDDMLEGLEKLEIL 509 (680)
T ss_dssp EECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTT---TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred EecCCCCcceeChhhhhcCcccccchhcccc-ccccccCCccc---ccCCCCCEEECCCCCCCc-CChhhhccccccCEE
Confidence 8888887776544 67778888888888766 4321 12222 667788888888887775 444556777888888
Q ss_pred eccCccCcccccccccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCCccccCCccEEEcC
Q 005004 544 SLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLS 623 (720)
Q Consensus 544 ~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~L~~L~l~ 623 (720)
++++|. +..+.....+ ......+..+++|+.|+++
T Consensus 510 ~Ls~N~-l~~~~~~~~~--------------------------------------------~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 510 DLQHNN-LARLWKHANP--------------------------------------------GGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp ECCSSC-CGGGGSTTST--------------------------------------------TSCCCTTTTCTTCCEEECC
T ss_pred eCCCCC-ccccchhhcc--------------------------------------------CCcchhhcCCCCCCEEECC
Confidence 888775 2221100000 0000114455566666666
Q ss_pred CC--cChHH-HHhhCCCccEEecccccchhhhh----hcCCcccEEEeecccCChhhHHHHHh-cCCCcceEeccCCcCC
Q 005004 624 LS--ANLKE-VDVACFNLCFLNLSNCCSLETLK----LDCPKLTSLFLQSCNIDEEGVESAIT-QCGMLETLDVRFCPKI 695 (720)
Q Consensus 624 ~~--~~l~~-~~~~~~~L~~L~l~~~~~L~~l~----~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~~L~~L~l~~c~~l 695 (720)
++ ..++. .+..+++|+.|+++++. ++.++ ..+++|++|++++|.|+ ...+..+. .+++|+.+++++|+..
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCC-BCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCC-ccChhHhcccccccCEEEccCCCcc
Confidence 43 12222 12356777777777664 33343 34689999999999986 44455566 7899999999999988
Q ss_pred Cchh
Q 005004 696 CSTS 699 (720)
Q Consensus 696 ~~~~ 699 (720)
+++.
T Consensus 623 c~c~ 626 (680)
T 1ziw_A 623 CTCE 626 (680)
T ss_dssp BCCC
T ss_pred cCCc
Confidence 8865
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-38 Score=353.94 Aligned_cols=495 Identities=17% Similarity=0.168 Sum_probs=342.0
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
+++++|++++|.|+++.+.+|+++++|++|++++|.+....|+.+.++++|++|++++|++..+. +++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 46899999999999999999999999999999999998777888999999999999999998764 46999999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccc--eeeccC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR--ILNSSY 157 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~--~L~l~~ 157 (720)
++|.+. ..+.++++|++|++++|. ++....|.. ..+++|++|++++|. +....+..+. .+++|+ .|++++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKG-FPTEKLKVLDFQNNA-IHYLSKEDMS-SLQQATNLSLNLNG 188 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTT-CCCTTCCEEECCSSC-CCEECHHHHH-TTTTCCSEEEECTT
T ss_pred cccCcccCCcchhccCCcccEEECCCCc-ccccCcccc-cCCcccCEEEcccCc-ccccChhhhh-hhcccceeEEecCC
Confidence 999876 456889999999999985 663333444 449999999999997 7766666676 899999 899999
Q ss_pred CC--CCccccccCCcCcEEeccCCCCCchhhHHHhhcccccc--EEeccCCccccc--c-ccccccccceeccccccccc
Q 005004 158 CP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLE--VLELDNCNLLTS--V-SLELPRLQNIRLVHCRKFAD 230 (720)
Q Consensus 158 ~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~--~L~l~~~~~~~~--~-~~~~~~L~~l~~~~~~~l~~ 230 (720)
|. .+++.......|+.|++.++.. .+..+..+..+. .+.+........ + +..+..+... .++.
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~------~L~~ 258 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQN----LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM------SVES 258 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSC----HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS------EEEE
T ss_pred CccCccChhHhhhccccccccCCchh----HHHHhhhccccchhheechhhccccccccChhHhchhhcC------ceeE
Confidence 87 5555666667899999998642 222233332222 222221111100 0 0011111100 2233
Q ss_pred chhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCC
Q 005004 231 LNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 307 (720)
Q Consensus 231 ~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 307 (720)
++++++.+..+ .+..+++|+++++++|.++.. +..+. .+++|++|++++ +.+++..+..+ ..+++
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l~-------~l~~L~~L~l~~-n~l~~~~~~~~---~~l~~ 326 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLV-------GLSTLKKLVLSA-NKFENLCQISA---SNFPS 326 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC-CSSCC-------SCTTCCEEECTT-CCCSBGGGGCG---GGCTT
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCC-Chhhc-------ccccCCEEECcc-CCcCcCchhhh---hccCc
Confidence 33333333333 245555666666666555432 11111 235566666665 35555444333 45555
Q ss_pred ccEEEeccCCCCceecc----ccCCceeEeecCCCccccc------cccCCcccEEeccCCCccccccccccccceeccC
Q 005004 308 LKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITAL------ELKCPILEKVCLDGCDHIESASFVPVALQSLNLG 377 (720)
Q Consensus 308 L~~L~l~~~~~l~~~~~----~~~~l~~l~l~~~~~l~~l------~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~ 377 (720)
|++|++++|.....++. ....++.+.+.++. +..+ ...+++|+++++++|.-.. ..|.. +.
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~-----~~ 397 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEA-----FK 397 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEE---ECTTT-----TT
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCc---CCHHH-----hc
Confidence 66666665543222221 22344444444432 2221 2357888889888875221 12222 67
Q ss_pred CCCCCcccccccceeeeeeecCccccc-ccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCch--h
Q 005004 378 ICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD--G 454 (720)
Q Consensus 378 ~~~~L~~l~l~~~~l~~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~ 454 (720)
.+++|+.+++++|.++ +..+ ..+..+++|+.|++++|. +.. ..+..+..+++|++|++++|.+.+.. .
T Consensus 398 ~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLK-------VKDAQSPFQNLHLLKVLNLSHSL-LDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp TCTTCSEEECTTCCEE-------CCTTCCTTTTCTTCCEEECTTCC-CBT-TCTTTTTTCTTCCEEECTTCBCGGGEECS
T ss_pred CCccCCeEECCCCcCC-------CcccchhhhCcccCCEEECCCCc-cCC-cCHHHHhCCCCCCEEECCCCCCCcccccc
Confidence 8899999999999874 3333 347889999999999984 433 24566788999999999999876532 1
Q ss_pred hHHhhcCCCCCeeecCCcccCCh-hHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHH
Q 005004 455 LYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 533 (720)
Q Consensus 455 ~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~ 533 (720)
...+..+++|++|++++|.++++ |..+..+++|+.|++++|+ +++..+..+ ..+++| .|++++|++++ ..+..
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l---~~l~~L-~L~L~~N~l~~-~~~~~ 542 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEAL---SHLKGI-YLNLASNHISI-ILPSL 542 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGG---TTCCSC-EEECCSSCCCC-CCGGG
T ss_pred chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc-cCcCChhHh---Cccccc-EEECcCCcccc-cCHhh
Confidence 24688899999999999999986 4588999999999999987 888777666 788999 99999999987 66677
Q ss_pred HhhCCCCcEEeccCccCcc
Q 005004 534 LAYCTHLTHVSLNGCGNMH 552 (720)
Q Consensus 534 l~~~~~L~~L~l~~~~~l~ 552 (720)
+..+++|+.|++++|+...
T Consensus 543 ~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 543 LPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp HHHHHTSSEEECTTCCEEC
T ss_pred cccCCCCCEEeCCCCCccc
Confidence 8889999999999998543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-39 Score=362.02 Aligned_cols=458 Identities=17% Similarity=0.123 Sum_probs=291.3
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
+++++|++++|.+++..+.+|+++++|++|++++|.+.+..|..+.++++|++|++++|++..++ +++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999999999999999999999999997777888999999999999999998773 46999999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCc----cceeec
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCAN----LRILNS 155 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~----L~~L~l 155 (720)
++|.+. ..+.++++|++|++++|. ++...+|..++++++|++|++++|. +....+..+. .+++ +++|++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ-FLRENPQVNLSLDM 188 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTH-HHHHCTTCCCEEEC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc-ceecChhhhh-hhhccccccceeec
Confidence 999876 467899999999999985 6644578889999999999999997 6654444333 3343 558999
Q ss_pred cCCC--CCccccccCCcCcEEeccCCCCCc-hhhHHHhhccccccEEeccCCccccccccccccccceecccccccccch
Q 005004 156 SYCP--NISLESVRLPMLTVLQLHSCEGIT-SASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLN 232 (720)
Q Consensus 156 ~~~~--~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~ 232 (720)
++|. .++.......+|+.|+++++ .+. ...+..+..++.|+.+++....+... ..+..+....
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----~~l~~~~~~~-------- 254 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGN-FNSSNIMKTCLQNLAGLHVHRLILGEFKDE-----RNLEIFEPSI-------- 254 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESC-CSCHHHHHHHHHTTTTCEEEEEEEECCTTS-----CCCSCCCGGG--------
T ss_pred cCCCcceeCcccccCceeeeeeccCC-ccchhHHHHHhccccccccccccccccccC-----CcccccChHH--------
Confidence 9987 66666666669999999995 554 56778888899999887754322211 0011000000
Q ss_pred hhhcccceeeccCCCcccEEEe-ccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEE
Q 005004 233 LRAMMLSSIMVSNCAALHRINI-TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 311 (720)
Q Consensus 233 l~~~~l~~l~~~~~~~L~~l~l-~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L 311 (720)
+. .+... .++.+.+ ..+.+.+..+. +. .+++|+.|++++ +.++... .+..+++|++|
T Consensus 255 -----~~--~l~~l-~l~~l~l~~~~~~~~~~~~-~~-------~l~~L~~L~l~~-~~~~~l~-----~l~~~~~L~~L 312 (606)
T 3vq2_A 255 -----ME--GLCDV-TIDEFRLTYTNDFSDDIVK-FH-------CLANVSAMSLAG-VSIKYLE-----DVPKHFKWQSL 312 (606)
T ss_dssp -----GT--TGGGS-EEEEEEECCCTTCCGGGGS-CG-------GGTTCSEEEEES-CCCCCCC-----CCCTTCCCSEE
T ss_pred -----hh--hhhhc-cHhheeccccccccccccc-cc-------cCCCCCEEEecC-ccchhhh-----hccccccCCEE
Confidence 00 01111 3445555 44455443322 22 347888888888 4665432 33678889999
Q ss_pred EeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccce
Q 005004 312 VLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALH 391 (720)
Q Consensus 312 ~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~ 391 (720)
++++|. +..++ .+ .+++|+++++++|..+... .+..+++|+.+++++|.
T Consensus 313 ~l~~n~-l~~lp------------------~~--~l~~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 313 SIIRCQ-LKQFP------------------TL--DLPFLKSLTLTMNKGSISF----------KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp EEESCC-CSSCC------------------CC--CCSSCCEEEEESCSSCEEC----------CCCCCTTCCEEECCSSC
T ss_pred Eccccc-Ccccc------------------cC--CCCccceeeccCCcCccch----------hhccCCCCCEEECcCCc
Confidence 998886 23222 11 4566777777766433221 24556666666666666
Q ss_pred eeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCC
Q 005004 392 MVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY 471 (720)
Q Consensus 392 l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 471 (720)
++.. +.++..+..+++|+.|++++|. +.. ++..+..+++|+.|++++|.+.+......+..+++|++|++++
T Consensus 362 l~~~-----~~~~~~~~~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 362 LSFS-----GCCSYSDLGTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EEEE-----EECCHHHHCCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred cCCC-----cchhhhhccCCcccEeECCCCc-ccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 5321 1234455566666666666652 332 3344555566666666665554433223455555666666666
Q ss_pred cccCC-hhHHHhccccccEEEcCCCCCCChh-HHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCc
Q 005004 472 TFLTN-LEPVFESCLQLKVLKLQACKYLTNT-SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 548 (720)
Q Consensus 472 ~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~ 548 (720)
|.+.+ .|..+..+++|+.|++++|. +++. .+..+ ..+++|+.|++++|++++ ..+..+..+++|++|++++|
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVF---ANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCC---TTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhh---ccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCC
Confidence 65554 23345555555555555554 3321 12212 445555555555555544 33334444555555555554
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.8e-38 Score=356.50 Aligned_cols=514 Identities=15% Similarity=0.137 Sum_probs=356.9
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQL 78 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L 78 (720)
+|+++++|++|++++|.+++..+++|+++++|++|++++|.+....+..+.++++|++|++++|.+..++ +++++|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 5888999999999999999998999999999999999999986544446888999999999999987765 358899
Q ss_pred cEEeccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHh--hcCCCCCEEEecCCCCCchhhHHHHH--------
Q 005004 79 EHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAA--TSCPQLESLDMSNCSCVSDESLREIA-------- 144 (720)
Q Consensus 79 ~~L~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~-------- 144 (720)
++|++++|.+. ..+.++++|++|++++|. ++. ..+..+ ..+++|++|++++|. +.+..+..+.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQA-LKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCC-BCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEE
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCc-ccc-cCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhh
Confidence 99999998776 456788899999999885 552 223333 345788888888885 4332222211
Q ss_pred ----------------H--hcCccceeeccCCC---CCccccccCCc--CcEEeccCCCCCchhhHHHhhccccccEEec
Q 005004 145 ----------------L--SCANLRILNSSYCP---NISLESVRLPM--LTVLQLHSCEGITSASMAAISHSYMLEVLEL 201 (720)
Q Consensus 145 ----------------~--~l~~L~~L~l~~~~---~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 201 (720)
. ..++|+.|++++|. ..+..+..++. |+.|++++ +.++...+..+..+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT-SCCCEECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC-CCcCccCcccccCcccccEeeC
Confidence 0 23677888888775 33445555544 99999988 4777777777888899999999
Q ss_pred cCCcccccccccc---ccccceecccccccccchhhhcccce---eeccCCCcccEEEeccCcccccccccchhhHHHHh
Q 005004 202 DNCNLLTSVSLEL---PRLQNIRLVHCRKFADLNLRAMMLSS---IMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL 275 (720)
Q Consensus 202 ~~~~~~~~~~~~~---~~L~~l~~~~~~~l~~~~l~~~~l~~---l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~ 275 (720)
++|.+.+..+..+ ++|+.+++.++..-. .+....+.. ..+..+++|+++++++|.+++..+..+.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------- 350 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ--SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT------- 350 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-------
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhc--ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc-------
Confidence 9887776655433 455555554321100 001011111 2466777788888877777665433222
Q ss_pred hCCCceEEecCCCccc--chhhhhhhcCCCCCCCccEEEeccCCCCceecc----ccCCceeEeecCCCcccc----ccc
Q 005004 276 QCQCLQEVDLTDCESL--TNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITA----LEL 345 (720)
Q Consensus 276 ~~~~L~~L~l~~c~~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~l~l~~~~~l~~----l~~ 345 (720)
.+++|++|++++| .+ .......+.. ...++|+.|++++|. +..++. ....++.+.+.++.--.. ...
T Consensus 351 ~l~~L~~L~Ls~n-~~~~~~l~~~~f~~-~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 351 GLINLKYLSLSNS-FTSLRTLTNETFVS-LAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TCTTCCEEECTTC-BSCCCEECTTTTGG-GTTSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred cccCCcEEECCCC-chhhhhcchhhhcc-cccCcCceEECCCCC-CCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 2467777777763 32 2211112211 122567777777765 333321 234555666655432111 223
Q ss_pred cCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCc
Q 005004 346 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 425 (720)
Q Consensus 346 ~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 425 (720)
.+++|+++++++|.-.. ..+. .+..+++|+.+++++|.++.+ +.+|..+..+++|+.|++++| .++
T Consensus 428 ~l~~L~~L~Ls~n~l~~---~~~~-----~~~~~~~L~~L~l~~n~l~~~-----~~~p~~~~~l~~L~~L~Ls~N-~l~ 493 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQ---LTRN-----SFALVPSLQRLMLRRVALKNV-----DSSPSPFQPLRNLTILDLSNN-NIA 493 (680)
T ss_dssp TCTTCCEEECCSCSEEE---CCTT-----TTTTCTTCCEEECTTSCCBCT-----TCSSCTTTTCTTCCEEECCSS-CCC
T ss_pred CcccccEEecCCCCcce---eChh-----hhhcCcccccchhcccccccc-----ccCCcccccCCCCCEEECCCC-CCC
Confidence 67888888888876221 1112 266788899999988876322 467888999999999999998 555
Q ss_pred chhhhhhhccCCCccEEeecCCCCCCchh-------hHHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCC
Q 005004 426 DDCLSATTTSCPLIESLILMSCQSIGPDG-------LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKY 497 (720)
Q Consensus 426 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~ 497 (720)
. ..+..+.++++|++|++++|.+..... ...+..+++|++|++++|.+..+|. .|..+++|+.|++++|.
T Consensus 494 ~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~- 571 (680)
T 1ziw_A 494 N-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN- 571 (680)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred c-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC-
Confidence 3 234457899999999999998765311 1237789999999999999999887 68999999999999987
Q ss_pred CChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHh-hCCCCcEEeccCccCcc
Q 005004 498 LTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA-YCTHLTHVSLNGCGNMH 552 (720)
Q Consensus 498 l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~-~~~~L~~L~l~~~~~l~ 552 (720)
++.+.+..+ ..+++|+.|++++|+++. ..+..+. .+++|+.+++++|+-..
T Consensus 572 l~~l~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 572 LNTLPASVF---NNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCCCCTTTT---TTCTTCCEEECTTSCCCB-CCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCcCCHhHh---CCCCCCCEEECCCCcCCc-cChhHhcccccccCEEEccCCCccc
Confidence 876654444 678999999999999987 5566666 78999999999988544
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-38 Score=352.52 Aligned_cols=537 Identities=18% Similarity=0.129 Sum_probs=277.6
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcchHH
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQ 90 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 90 (720)
+.++.++..++ .+|..+. .++++|++++|.+.+..|..+.++++|++|++++|++..+. ..
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----------------~~ 75 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH----------------ED 75 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC----------------TT
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeC----------------hh
Confidence 45666666665 3444443 36788888888886666777888888888888888776553 12
Q ss_pred HHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCc-ccccc
Q 005004 91 AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS-LESVR 167 (720)
Q Consensus 91 ~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~ 167 (720)
.+.++++|++|++++|. ++. ..|..++.+++|++|++++|. +....+..+. .+++|++|++++|. .++ ..+..
T Consensus 76 ~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANP-LIF-MAETALSGPKALKHLFFIQTG-ISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFP 151 (606)
T ss_dssp TTTTCTTCCEEECTTCC-CSE-ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCC
T ss_pred hccCccccCeeeCCCCc-ccc-cChhhhcccccccEeeccccC-cccCCcchhc-cCCcccEEECCCCcccccCcccccC
Confidence 34455555555555553 331 223445555555666655554 3332222333 55566666666654 221 22334
Q ss_pred CCcCcEEeccCCCCCchhhHHHhhcccccc--EEeccCCcccccccccc--ccccceecccccccccc--hhhhccccee
Q 005004 168 LPMLTVLQLHSCEGITSASMAAISHSYMLE--VLELDNCNLLTSVSLEL--PRLQNIRLVHCRKFADL--NLRAMMLSSI 241 (720)
Q Consensus 168 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~--~~L~~l~~~~~~~l~~~--~l~~~~l~~l 241 (720)
+++|++|++++ +.++...+..++.+++|+ +|++++|.+.+..+..+ ..++.+++.++..+... .+....+..+
T Consensus 152 l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l 230 (606)
T 3t6q_A 152 TEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230 (606)
T ss_dssp CTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEE
T ss_pred CcccCEEEccc-CcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhhe
Confidence 67777777776 466666666777777777 67777776665544433 34555555544322111 0111111112
Q ss_pred eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCce
Q 005004 242 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 321 (720)
Q Consensus 242 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 321 (720)
.+..+..+....+....+.+ + .-.+|+.|++++ +.+++..+..+ ..+++|++|++++|. ++.
T Consensus 231 ~~~~~~~~~~~~i~~~~~~~--------l-----~~~~L~~L~l~~-n~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~ 292 (606)
T 3t6q_A 231 WLGTFEDMDDEDISPAVFEG--------L-----CEMSVESINLQK-HYFFNISSNTF---HCFSGLQELDLTATH-LSE 292 (606)
T ss_dssp ECCCCTTSCCCCCCGGGGGG--------G-----GGSEEEEEECTT-CCCSSCCTTTT---TTCTTCSEEECTTSC-CSC
T ss_pred echhhccccccccChhHhch--------h-----hcCceeEEEeec-CccCccCHHHh---ccccCCCEEeccCCc-cCC
Confidence 22222222222222111111 1 113678888887 57777665555 677888888888775 332
Q ss_pred eccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcc
Q 005004 322 VRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCG 401 (720)
Q Consensus 322 ~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~ 401 (720)
+| .. +.++++|+.+++++|.++ +
T Consensus 293 lp---------------------------------------------~~-----l~~l~~L~~L~l~~n~l~-------~ 315 (606)
T 3t6q_A 293 LP---------------------------------------------SG-----LVGLSTLKKLVLSANKFE-------N 315 (606)
T ss_dssp CC---------------------------------------------SS-----CCSCTTCCEEECTTCCCS-------B
T ss_pred CC---------------------------------------------hh-----hcccccCCEEECccCCcC-------c
Confidence 22 11 233444444444444431 2
Q ss_pred cccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchh-hHHhhcCCCCCeeecCCcccCCh-hH
Q 005004 402 VLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG-LYSLRSLQNLTMLDLSYTFLTNL-EP 479 (720)
Q Consensus 402 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~ 479 (720)
..+..+..+++|+.|++++|. +.....+..+..+++|++|++++|.+..... +..+..+++|++|++++|.+.++ +.
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred CchhhhhccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 223344455555555555542 2211112224455555555555555433210 22344555555555555555543 22
Q ss_pred HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCccccccccc
Q 005004 480 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGAS 559 (720)
Q Consensus 480 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~ 559 (720)
.+..+++|+.|++++|. ++...+.. .+..+++|+.|++++|.+.. ..+..+..+++|++|++++|....... .
T Consensus 395 ~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-- 467 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTR-LKVKDAQS--PFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNI-Q-- 467 (606)
T ss_dssp TTTTCTTCSEEECTTCC-EECCTTCC--TTTTCTTCCEEECTTCCCBT-TCTTTTTTCTTCCEEECTTCBCGGGEE-C--
T ss_pred HhcCCccCCeEECCCCc-CCCcccch--hhhCcccCCEEECCCCccCC-cCHHHHhCCCCCCEEECCCCCCCcccc-c--
Confidence 45555555555555554 33221111 01445555555555555544 333444555555555555554111000 0
Q ss_pred CCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCCccccCCccEEEcCCCcCh---HHHHhhCC
Q 005004 560 GCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANL---KEVDVACF 636 (720)
Q Consensus 560 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~~L~~L~l~~~~~l---~~~~~~~~ 636 (720)
....+..+++|++|+++++.-- +.....++
T Consensus 468 -----------------------------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 468 -----------------------------------------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp -----------------------------------------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -----------------------------------------------cchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 0001223334444444432110 11122345
Q ss_pred CccEEecccccchhhhh---hcCCcccEEEeecccCChhhHHHHHhcCCCcceEeccCCcCCCchhHHHH
Q 005004 637 NLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRL 703 (720)
Q Consensus 637 ~L~~L~l~~~~~L~~l~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 703 (720)
+|+.|++++|..-...+ ..+++| .|++++|.++ ...|..+..+++|+.|++++|+..+++...++
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 568 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-CCCGGGHHHHHTSSEEECTTCCEECSGGGHHH
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-ccCHhhcccCCCCCEEeCCCCCccccCCcHHH
Confidence 66666666654222222 246788 9999999987 55677788899999999999998888765444
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-36 Score=341.34 Aligned_cols=480 Identities=16% Similarity=0.108 Sum_probs=350.0
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCC
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQ 77 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~ 77 (720)
.+|+++++|++|++++|.++++.+++|.++++|++|++++|.+.+..|..+.++++|++|++++|.+..++ +++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 36889999999999999999999999999999999999999998777999999999999999999997665 47999
Q ss_pred ccEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCC----CCEEEecCCCCCchhhHHHHHHhcC
Q 005004 78 LEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQ----LESLDMSNCSCVSDESLREIALSCA 148 (720)
Q Consensus 78 L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~----L~~L~l~~~~~l~~~~~~~~~~~l~ 148 (720)
|++|++++|.+. ..+.++++|++|++++|. ++. ..+..++.+++ +.+|++++|. +...... .+ ...
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~-~~-~~~ 204 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQT-ITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQ-AF-QGI 204 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCE-ECTTTTHHHHHCTTCCCEEECTTCC-CCEECTT-TT-TTC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-cee-cChhhhhhhhccccccceeeccCCC-cceeCcc-cc-cCc
Confidence 999999999875 568999999999999985 552 22333444443 4589999987 5533333 33 344
Q ss_pred ccceeeccCCC----CCccccccCCcCcEEeccCC-----CC---CchhhHHHhhccccccEEec-cCCccccccccccc
Q 005004 149 NLRILNSSYCP----NISLESVRLPMLTVLQLHSC-----EG---ITSASMAAISHSYMLEVLEL-DNCNLLTSVSLELP 215 (720)
Q Consensus 149 ~L~~L~l~~~~----~~~~~~~~~~~L~~L~l~~~-----~~---l~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~~ 215 (720)
+|+.|++++|. ..+..+.+++.++.+++... .. +....+..+..+ +++.+++ ..+.+.+.++. +
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~- 281 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F- 281 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-C-
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccccc-c-
Confidence 89999999885 34556777888887776431 11 111222222222 4556666 33433333332 2
Q ss_pred cccceecccccccccchhhhccccee-eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchh
Q 005004 216 RLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 294 (720)
Q Consensus 216 ~L~~l~~~~~~~l~~~~l~~~~l~~l-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 294 (720)
..+++++.+++.++.+..+ .+..+++|+++++++|.+.... .+ .+++|++|++++|..+...
T Consensus 282 -------~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp--~~--------~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 282 -------HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP--TL--------DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp -------GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC--CC--------CCSSCCEEEEESCSSCEEC
T ss_pred -------ccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc--cC--------CCCccceeeccCCcCccch
Confidence 2233333444444444444 5778889999999999884331 22 3589999999995333322
Q ss_pred hhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCcccccccccccccee
Q 005004 295 VCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSL 374 (720)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L 374 (720)
....+++|++|++++|. +...+. +......+++|+++++++|.-. .+|.
T Consensus 345 ------~~~~l~~L~~L~ls~n~-l~~~~~---------------~~~~~~~~~~L~~L~L~~n~l~----~~~~----- 393 (606)
T 3vq2_A 345 ------KKVALPSLSYLDLSRNA-LSFSGC---------------CSYSDLGTNSLRHLDLSFNGAI----IMSA----- 393 (606)
T ss_dssp ------CCCCCTTCCEEECCSSC-EEEEEE---------------CCHHHHCCSCCCEEECCSCSEE----EECC-----
T ss_pred ------hhccCCCCCEEECcCCc-cCCCcc---------------hhhhhccCCcccEeECCCCccc----cchh-----
Confidence 23688999999999985 332210 1112235677888888887522 1333
Q ss_pred ccCCCCCCcccccccceeeeeeecCccccc-ccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCch
Q 005004 375 NLGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD 453 (720)
Q Consensus 375 ~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 453 (720)
.+..+++|+.+++++|.+. +..+ ..+..+++|+.|++++|. +.. ..+..+..+++|++|++++|.+....
T Consensus 394 ~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLK-------RVTEFSAFLSLEKLLYLDISYTN-TKI-DFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CCTTCTTCCEEECTTSEEE-------STTTTTTTTTCTTCCEEECTTSC-CEE-CCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred hccCCCCCCeeECCCCccC-------CccChhhhhccccCCEEECcCCC-CCc-cchhhhcCCCCCCEEECCCCcCCCcc
Confidence 2678899999999999884 4444 577889999999999984 433 25566889999999999999877643
Q ss_pred hhHHhhcCCCCCeeecCCcccCChh-HHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHH
Q 005004 454 GLYSLRSLQNLTMLDLSYTFLTNLE-PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEE 532 (720)
Q Consensus 454 ~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~ 532 (720)
.+..+..+++|++|++++|.+++++ ..+..+++|+.|++++|+ +++..+..+ ..+++|+.|++++|+++. ++.
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~l~~N~l~~--~p~ 538 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHY---NQLYSLSTLDCSFNRIET--SKG 538 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGT---TTCTTCCEEECTTSCCCC--EES
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHc---cCCCcCCEEECCCCcCcc--cCH
Confidence 3567889999999999999999864 478999999999999987 877666655 789999999999999985 444
Q ss_pred HHhhCC-CCcEEeccCccCcc
Q 005004 533 LLAYCT-HLTHVSLNGCGNMH 552 (720)
Q Consensus 533 ~l~~~~-~L~~L~l~~~~~l~ 552 (720)
.+..++ +|+.|++++|+...
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCC
T ss_pred hHhhhcccCcEEEccCCCccc
Confidence 477786 59999999998554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=346.80 Aligned_cols=462 Identities=17% Similarity=0.112 Sum_probs=300.3
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcc-cccccccCCCcEEEcccccceeee----ccCCCccEE
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGV-QEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 81 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L 81 (720)
.++++.|||++|.|+++.+.+|.++++|++|++++|.....+ |..+.++++|++|++++|++..+. .++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 478999999999999999999999999999999999766666 778999999999999999998774 469999999
Q ss_pred eccCcchHH------HHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhc--Ccccee
Q 005004 82 SLKRSNMAQ------AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSC--ANLRIL 153 (720)
Q Consensus 82 ~l~~~~~~~------~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l--~~L~~L 153 (720)
++++|.+.. .+.++++|++|++++|. ++....+..++++++|++|++++|. +....+..+. .+ ++|+.|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~-~l~~~~L~~L 179 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELE-PLQGKTLSFF 179 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGH-HHHHCSSCCC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcc-cccCCccceE
Confidence 999998862 27889999999999986 6543344678999999999999997 5544334433 33 899999
Q ss_pred eccCCC---CCccccccCCc------CcEEeccCCCCCchhhHHHhhcc---ccccEEeccCCcccccccccccccccee
Q 005004 154 NSSYCP---NISLESVRLPM------LTVLQLHSCEGITSASMAAISHS---YMLEVLELDNCNLLTSVSLELPRLQNIR 221 (720)
Q Consensus 154 ~l~~~~---~~~~~~~~~~~------L~~L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~L~~l~ 221 (720)
++++|. ..+..++.+++ |+.|++++ +.+....+..+... .+++.+.++.+...... ....+...
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~--~~~~l~~~- 255 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF--GFHNIKDP- 255 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS-CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS--SCSSSTTG-
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCC-CcCchhHHHHHHhhcCcccccceecccccccccc--cccccCCC-
Confidence 999986 34445555544 88888887 35555555444432 56666666533211110 00000000
Q ss_pred cccccccccchhhhcccceeeccC--CCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhh
Q 005004 222 LVHCRKFADLNLRAMMLSSIMVSN--CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 299 (720)
Q Consensus 222 ~~~~~~l~~~~l~~~~l~~l~~~~--~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~ 299 (720)
... .+.. +++|+.+++++|.+.+..+..+.. +++|+.|++++ |.+++..+..+
T Consensus 256 ------------~~~-----~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~L~~-n~i~~~~~~~~ 310 (844)
T 3j0a_A 256 ------------DQN-----TFAGLARSSVRHLDLSHGFVFSLNSRVFET-------LKDLKVLNLAY-NKINKIADEAF 310 (844)
T ss_dssp ------------GGT-----TTTTTTTSCCCEEECTTCCCCEECSCCSSS-------CCCCCEEEEES-CCCCEECTTTT
T ss_pred ------------Chh-----hhhccccCCccEEECCCCcccccChhhhhc-------CCCCCEEECCC-CcCCCCChHHh
Confidence 000 1222 357888888888877654443333 37888888888 57777666655
Q ss_pred cCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCC
Q 005004 300 SDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGIC 379 (720)
Q Consensus 300 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~ 379 (720)
..+++|++|++++|. +..+.. .....+++|+.++++++. +. .+++. .+..+
T Consensus 311 ---~~l~~L~~L~Ls~N~-l~~~~~-----------------~~~~~l~~L~~L~L~~N~-i~---~~~~~----~~~~l 361 (844)
T 3j0a_A 311 ---YGLDNLQVLNLSYNL-LGELYS-----------------SNFYGLPKVAYIDLQKNH-IA---IIQDQ----TFKFL 361 (844)
T ss_dssp ---TTCSSCCEEEEESCC-CSCCCS-----------------CSCSSCTTCCEEECCSCC-CC---CCCSS----CSCSC
T ss_pred ---cCCCCCCEEECCCCC-CCccCH-----------------HHhcCCCCCCEEECCCCC-CC---ccChh----hhcCC
Confidence 677888888888875 222110 011134556666666552 11 11111 25566
Q ss_pred CCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhh
Q 005004 380 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 459 (720)
Q Consensus 380 ~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 459 (720)
++|+.+++++|.++ .++ .+++|+.|++++| .+.. ++. ...+++.+++++|.+........+.
T Consensus 362 ~~L~~L~Ls~N~l~--------~i~----~~~~L~~L~l~~N-~l~~--l~~---~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 362 EKLQTLDLRDNALT--------TIH----FIPSIPDIFLSGN-KLVT--LPK---INLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp CCCCEEEEETCCSC--------CCS----SCCSCSEEEEESC-CCCC--CCC---CCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred CCCCEEECCCCCCC--------ccc----CCCCcchhccCCC-Cccc--ccc---cccccceeecccCccccCchhhhhh
Confidence 77777777777652 222 2566777777776 3332 222 2456777777777766654444556
Q ss_pred cCCCCCeeecCCcccCChhH--HHhccccccEEEcCCCCCCChhHHHHH--HhcCCCCCcceeecCCCccchHHHHHHHh
Q 005004 460 SLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESL--YKKGSLPALQELDLSYGTLCQSAIEELLA 535 (720)
Q Consensus 460 ~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~~~L~~L~l~~~~i~~~~~~~~l~ 535 (720)
.+++|+.|++++|++++++. .+..+++|+.|++++|. ++....... ..+..+++|+.|++++|++++ ..+..+.
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 501 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFS 501 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-CCTTSSS
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCcccc-cChhHcc
Confidence 67777777777777765433 34556777777777765 432211000 112556777777777777765 4455566
Q ss_pred hCCCCcEEeccCcc
Q 005004 536 YCTHLTHVSLNGCG 549 (720)
Q Consensus 536 ~~~~L~~L~l~~~~ 549 (720)
.+++|+.|++++|.
T Consensus 502 ~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 502 HLTALRGLSLNSNR 515 (844)
T ss_dssp SCCSCSEEEEESCC
T ss_pred chhhhheeECCCCC
Confidence 67777777777764
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=330.70 Aligned_cols=478 Identities=17% Similarity=0.131 Sum_probs=334.3
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
++++.|++++|.++++.+.+|+++++|++|++++|.+.+..+..+.++++|++|++++|++..++ .++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999998999999999999999999997666778899999999999999998776 46999999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCcc----ceeec
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL----RILNS 155 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L----~~L~l 155 (720)
++|.+. ..++++++|++|++++|. ++...+|..++++++|++|++++|. +....+..+. .+++| +.|++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~~~~~L~l 184 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR-VLHQMPLLNLSLDL 184 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH-HHHTCTTCCCEEEC
T ss_pred cccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc-cceecHHHcc-chhccchhhhhccc
Confidence 999876 247899999999999985 6644568889999999999999997 6654444444 56667 88999
Q ss_pred cCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc-----cccc-ccccccceecccccc
Q 005004 156 SYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-----SVSL-ELPRLQNIRLVHCRK 227 (720)
Q Consensus 156 ~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~-~~~~L~~l~~~~~~~ 227 (720)
++|. .++.......+|+.|+++++..-....+..+..++.++...+....+.. .++. .+..+..+.+
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l----- 259 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI----- 259 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE-----
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch-----
Confidence 9987 4555444555899999988543444566667777777766553221110 0000 1111111111
Q ss_pred cccchhhhc-cccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCC
Q 005004 228 FADLNLRAM-MLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG 303 (720)
Q Consensus 228 l~~~~l~~~-~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 303 (720)
+.+.+... .+... .+..+++|+.++++++.++... .. ...+ +|++|++++| .++... . .
T Consensus 260 -~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~-------~~~~-~L~~L~l~~n-~~~~l~-----~-~ 322 (570)
T 2z63_A 260 -EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DF-------SYNF-GWQHLELVNC-KFGQFP-----T-L 322 (570)
T ss_dssp -EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCC-BC-------CSCC-CCSEEEEESC-BCSSCC-----B-C
T ss_pred -hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhh-hh-------hccC-CccEEeeccC-cccccC-----c-c
Confidence 11111111 00000 2445566666666666554321 11 1122 5666666663 443211 0 3
Q ss_pred CCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCc
Q 005004 304 GCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLS 383 (720)
Q Consensus 304 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~ 383 (720)
.+++|++|++++|......+ ...+++|+++++++|.- ...+..|.. +..+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~L~~L~l~~n~l-~~~~~~~~~-----~~~~~~L~ 376 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS--------------------EVDLPSLEFLDLSRNGL-SFKGCCSQS-----DFGTTSLK 376 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC--------------------CCBCTTCCEEECCSSCC-BEEEEEEHH-----HHTCSCCC
T ss_pred cccccCEEeCcCCccccccc--------------------cccCCCCCEEeCcCCcc-Ccccccccc-----ccccCccC
Confidence 45566666666554211110 03578888888888652 221112222 56788999
Q ss_pred ccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCC
Q 005004 384 TLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN 463 (720)
Q Consensus 384 ~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 463 (720)
.+++++|.+ ..++..+..+++|+.|++++| .+........+..+++|++|++++|.+.... +..+..+++
T Consensus 377 ~L~l~~n~l--------~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 446 (570)
T 2z63_A 377 YLDLSFNGV--------ITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSS 446 (570)
T ss_dssp EEECCSCSE--------EEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECC-TTTTTTCTT
T ss_pred EEECCCCcc--------ccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccc-hhhhhcCCc
Confidence 999999987 444555788999999999998 4444323345778999999999999876543 566888999
Q ss_pred CCeeecCCcccC--ChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCc
Q 005004 464 LTMLDLSYTFLT--NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLT 541 (720)
Q Consensus 464 L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~ 541 (720)
|++|++++|.+. .+|..+..+++|+.|++++|. +++..+..+ ..+++|+.|++++|++++ ..+..+..+++|+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 521 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF---NSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQ 521 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhh---hcccCCCEEeCCCCcCCC-CCHHHhhcccCCc
Confidence 999999999987 377788999999999999987 777656555 788999999999999987 5556678899999
Q ss_pred EEeccCccCc
Q 005004 542 HVSLNGCGNM 551 (720)
Q Consensus 542 ~L~l~~~~~l 551 (720)
.|++++|+..
T Consensus 522 ~L~l~~N~~~ 531 (570)
T 2z63_A 522 KIWLHTNPWD 531 (570)
T ss_dssp EEECCSSCBC
T ss_pred EEEecCCccc
Confidence 9999998743
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-35 Score=324.96 Aligned_cols=196 Identities=15% Similarity=0.086 Sum_probs=128.3
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEe
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 82 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~ 82 (720)
|+...+.|.+++.++. +|..+ .++|++|++++|.+.+..|..+.++++|++|++++|++..++ .++++|++|+
T Consensus 4 C~~~~~c~~~~~~l~~-ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCcccc-ccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3444455666666653 33333 256777777777775555666677777777777777776654 2466666777
Q ss_pred ccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCC
Q 005004 83 LKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 158 (720)
Q Consensus 83 l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 158 (720)
+++|.+. ..++++++|++|++++|. ++....|..++++++|++|++++|..+.......+. .+++|++|++++|
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n 158 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKAL 158 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhh-cccccCeeeccCC
Confidence 7666655 457888888888888885 553334566788888888888888633322223343 7788888888877
Q ss_pred C---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc
Q 005004 159 P---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 208 (720)
Q Consensus 159 ~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 208 (720)
. ..|..++++++|++|+++++ .........+..+++|++|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEEccCCcccc
Confidence 6 35666777788888888773 4544444444567778888887775443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=328.63 Aligned_cols=476 Identities=18% Similarity=0.160 Sum_probs=336.3
Q ss_pred ccccccCcCCeeecCCCCCch-hhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEccccccee-e-----ecc
Q 005004 2 KAVSLLRNLEALTLGRGQLGD-AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-V-----SIR 74 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~-----~~~ 74 (720)
.+|+++++|++|++++|...+ +.+.+|+++++|++|+|++|.+.+..|+.+.++++|++|++++|.+.. . ...
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 468999999999999995444 448899999999999999999987789999999999999999999875 2 247
Q ss_pred CCCccEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcC--CCCCEEEecCCCCCchhhHHHHHHhc
Q 005004 75 CPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSC--PQLESLDMSNCSCVSDESLREIALSC 147 (720)
Q Consensus 75 ~~~L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~l 147 (720)
+++|++|++++|.+. ..+.++++|++|++++|. ++. ..+..+..+ ++|+.|++++|. +....+..+. .+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~-~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~-~~ 197 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFL-VCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWG-KC 197 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCC-CCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCC-SS
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCe-eCHHHcccccCCccceEECCCCc-cccccccchh-hc
Confidence 999999999999876 468999999999999985 542 223444444 899999999997 5543333322 23
Q ss_pred C------ccceeeccCCC---CCccccc---cCCcCcEEeccCC--------CCCchhhHHHhhcc--ccccEEeccCCc
Q 005004 148 A------NLRILNSSYCP---NISLESV---RLPMLTVLQLHSC--------EGITSASMAAISHS--YMLEVLELDNCN 205 (720)
Q Consensus 148 ~------~L~~L~l~~~~---~~~~~~~---~~~~L~~L~l~~~--------~~l~~~~~~~l~~~--~~L~~L~l~~~~ 205 (720)
. +|+.|++++|. ..+..+. ....++.+.+..+ ..+.+.....+..+ ++|++|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 3 49999999985 3444333 2356778877621 12333333444443 789999999887
Q ss_pred cccccccccccccceecccccccccchhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceE
Q 005004 206 LLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 282 (720)
Q Consensus 206 ~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 282 (720)
+....+..+. .+++++.++++.+.+..+ .|..+++|+.|++++|.+++..+..+.. +++|+.
T Consensus 278 l~~~~~~~~~--------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------l~~L~~ 342 (844)
T 3j0a_A 278 VFSLNSRVFE--------TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG-------LPKVAY 342 (844)
T ss_dssp CCEECSCCSS--------SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS-------CTTCCE
T ss_pred ccccChhhhh--------cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC-------CCCCCE
Confidence 6655443332 233344455555555554 4777888888888888887664444443 378888
Q ss_pred EecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccc
Q 005004 283 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIE 362 (720)
Q Consensus 283 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~ 362 (720)
|++++ |.++...+..+ ..+++|++|++++|. ++.++. +++|+.++++++.-.
T Consensus 343 L~L~~-N~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~i~~----------------------~~~L~~L~l~~N~l~- 394 (844)
T 3j0a_A 343 IDLQK-NHIAIIQDQTF---KFLEKLQTLDLRDNA-LTTIHF----------------------IPSIPDIFLSGNKLV- 394 (844)
T ss_dssp EECCS-CCCCCCCSSCS---CSCCCCCEEEEETCC-SCCCSS----------------------CCSCSEEEEESCCCC-
T ss_pred EECCC-CCCCccChhhh---cCCCCCCEEECCCCC-CCcccC----------------------CCCcchhccCCCCcc-
Confidence 88888 57776665555 678888888888875 332221 456667777665421
Q ss_pred cccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEE
Q 005004 363 SASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESL 442 (720)
Q Consensus 363 ~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 442 (720)
.+|. ....++.++++.|.++.+ ..+..+..+++|+.|++++| .+........+..+++|+.|
T Consensus 395 ---~l~~--------~~~~l~~L~ls~N~l~~l------~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 395 ---TLPK--------INLTANLIHLSENRLENL------DILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp ---CCCC--------CCTTCCEEECCSCCCCSS------TTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBC
T ss_pred ---cccc--------cccccceeecccCccccC------chhhhhhcCCccceeeCCCC-cccccccccccccCCccccc
Confidence 1221 134567777777776311 11223457899999999998 45543223345568899999
Q ss_pred eecCCCCCCc----hhhHHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcce
Q 005004 443 ILMSCQSIGP----DGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 517 (720)
Q Consensus 443 ~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~ 517 (720)
++++|.+... ..+..+..+++|+.|++++|.++++++ .|..+++|+.|++++|. +++..+..+ .++|+.
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~-----~~~L~~ 530 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDL-----PANLEI 530 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCC-----CSCCCE
T ss_pred cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCccChhhh-----hccccE
Confidence 9999987532 113457788999999999999998766 68899999999999987 776543332 378999
Q ss_pred eecCCCccchHHHHHHHhhCCCCcEEeccCccCcc
Q 005004 518 LDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 552 (720)
Q Consensus 518 L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l~ 552 (720)
|++++|++++ ..+. .+++|+.+++++|+...
T Consensus 531 L~Ls~N~l~~-~~~~---~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 531 LDISRNQLLA-PNPD---VFVSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEEEECCCC-CCSC---CCSSCCEEEEEEECCCC
T ss_pred EECCCCcCCC-CChh---HhCCcCEEEecCCCccc
Confidence 9999999987 3433 35689999999987554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-32 Score=304.68 Aligned_cols=461 Identities=15% Similarity=0.096 Sum_probs=218.9
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|+.+.++++|++|++++|++..++ +++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46666666666666666666666666666666666665555556666666666666666665544 34666666666
Q ss_pred cCcchH-----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccC
Q 005004 84 KRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 157 (720)
Q Consensus 84 ~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 157 (720)
++|.+. ..+.++++|++|++++|..+. .+| ..+..+++|++|++++|. +....+..+. .+++|+.|++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~l~~ 181 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNELEIKALS-LRNYQSQSLK-SIRDIHHLTLHL 181 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETT-CCEECTTTTT-TCSEEEEEEEEC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCcccc--ccCHhhhhcccccCeeeccCCc-ccccChhhhh-ccccCceEeccc
Confidence 666554 235566666666666664222 222 345666666666666665 4444444443 555666666655
Q ss_pred CC--CCcccc-ccCCcCcEEeccCCCCCchhh--H-HHhhccccccEEeccCCcccccccc-------ccccccceeccc
Q 005004 158 CP--NISLES-VRLPMLTVLQLHSCEGITSAS--M-AAISHSYMLEVLELDNCNLLTSVSL-------ELPRLQNIRLVH 224 (720)
Q Consensus 158 ~~--~~~~~~-~~~~~L~~L~l~~~~~l~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~~-------~~~~L~~l~~~~ 224 (720)
+. .++..+ ..+++|++|+++++ .+++.. + .....+++|+.|+++++.+.+..+. .++.++.+.+.+
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred CcccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 54 222222 23556666666552 333321 0 1112245555666655544433222 122333333333
Q ss_pred ccccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCC
Q 005004 225 CRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGG 304 (720)
Q Consensus 225 ~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 304 (720)
|.--....+...... .+..+.+++.+.+.++.+.... .+.++..+....++|+.|++++ +.++.+....+ ..
T Consensus 261 ~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~~~~~~~~L~~L~l~~-n~l~~ip~~~~---~~ 332 (549)
T 2z81_A 261 CTLNGLGDFNPSESD--VVSELGKVETVTIRRLHIPQFY--LFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFS---QH 332 (549)
T ss_dssp CEEECCSCCCCCTTT--CCCCCTTCCEEEEESCBCSCGG--GSCCCCHHHHHSTTCCEEEEES-SCCCCCCHHHH---HH
T ss_pred ccccccccccccchh--hhhhhcccccccccccccchhh--hcccchhhhhhcccceEEEecc-CccccCCHHHH---hc
Confidence 211000000000000 2345566677776666554321 1122223333456777777777 45654433333 35
Q ss_pred CCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcc
Q 005004 305 CPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLST 384 (720)
Q Consensus 305 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~ 384 (720)
+++|++|++++|.-...++.... ....+++|+.+++++|.- ......+. .+..+++|+.
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~---------------~~~~l~~L~~L~Ls~N~l-~~~~~~~~-----~~~~l~~L~~ 391 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSA---------------CKGAWPSLQTLVLSQNHL-RSMQKTGE-----ILLTLKNLTS 391 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHT---------------CTTSSTTCCEEECTTSCC-CCHHHHHH-----HGGGCTTCCE
T ss_pred CccccEEEccCCccccccccchh---------------hhhccccCcEEEccCCcc-cccccchh-----hhhcCCCCCE
Confidence 67777777777651111110000 001223444444444321 00000000 1334455555
Q ss_pred cccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCC
Q 005004 385 LGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNL 464 (720)
Q Consensus 385 l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 464 (720)
+++++|.+ ..+|..+..+++|+.|++++| .+.. ++..+ .++|++|++++|.+.+.. ..+++|
T Consensus 392 L~Ls~N~l--------~~lp~~~~~~~~L~~L~Ls~N-~l~~--l~~~~--~~~L~~L~Ls~N~l~~~~-----~~l~~L 453 (549)
T 2z81_A 392 LDISRNTF--------HPMPDSCQWPEKMRFLNLSST-GIRV--VKTCI--PQTLEVLDVSNNNLDSFS-----LFLPRL 453 (549)
T ss_dssp EECTTCCC--------CCCCSCCCCCTTCCEEECTTS-CCSC--CCTTS--CTTCSEEECCSSCCSCCC-----CCCTTC
T ss_pred EECCCCCC--------ccCChhhcccccccEEECCCC-Cccc--ccchh--cCCceEEECCCCChhhhc-----ccCChh
Confidence 55555544 334444445555555555555 2322 11111 134555555555444321 244555
Q ss_pred CeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCcc
Q 005004 465 TMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 525 (720)
Q Consensus 465 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i 525 (720)
++|++++|+++.+|. ...+++|+.|++++|+ +++..+..+ ..+++|+.|++++|++
T Consensus 454 ~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 454 QELYISRNKLKTLPD-ASLFPVLLVMKISRNQ-LKSVPDGIF---DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-CCCCCTTGG---GGCTTCCEEECCSSCB
T ss_pred cEEECCCCccCcCCC-cccCccCCEEecCCCc-cCCcCHHHH---hcCcccCEEEecCCCc
Confidence 555555555554443 2344555555555544 443333222 3444555555555544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=312.98 Aligned_cols=457 Identities=16% Similarity=0.117 Sum_probs=313.3
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQL 78 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L 78 (720)
+|.++++|++|++++|.++++.+++|+++++|++|++++|.+....+..+.++++|++|++++|.+..++ +++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 6889999999999999999988999999999999999999997766788999999999999999998765 479999
Q ss_pred cEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCC----CEEEecCCCCCchhhHHHHHHhcCc
Q 005004 79 EHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL----ESLDMSNCSCVSDESLREIALSCAN 149 (720)
Q Consensus 79 ~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L----~~L~l~~~~~l~~~~~~~~~~~l~~ 149 (720)
++|++++|.+. ..+.++++|++|++++|. ++. ..+..++.+++| ++|++++|. +....+..+ ...+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~--~~~~ 201 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQS-IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF--KEIR 201 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCE-ECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTT--TTCE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cce-ecHHHccchhccchhhhhcccCCCC-ceecCHHHh--ccCc
Confidence 99999999764 568899999999999985 552 224566677777 899999997 554444444 3347
Q ss_pred cceeeccCCC----CCccccccCCcCcEEeccCC-----CCCchhhHHHhhccc--cccEEeccCC-ccccccccccccc
Q 005004 150 LRILNSSYCP----NISLESVRLPMLTVLQLHSC-----EGITSASMAAISHSY--MLEVLELDNC-NLLTSVSLELPRL 217 (720)
Q Consensus 150 L~~L~l~~~~----~~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~~l~~~~--~L~~L~l~~~-~~~~~~~~~~~~L 217 (720)
|+.|+++++. .++..+..++.++...+... ..+.......+..+. .++.+++.++ .+.+..+..+
T Consensus 202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--- 278 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--- 278 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT---
T ss_pred ceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh---
Confidence 9999998874 23333445555544433210 011111111222222 2445555544 2222222222
Q ss_pred cceecccccccccchhhhccccee--eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhh
Q 005004 218 QNIRLVHCRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSV 295 (720)
Q Consensus 218 ~~l~~~~~~~l~~~~l~~~~l~~l--~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~ 295 (720)
..+++++.+++.++.+..+ .+..+ .|+++++++|.+...... .+++|+.|++++| .+.+..
T Consensus 279 -----~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~----------~l~~L~~L~l~~n-~~~~~~ 341 (570)
T 2z63_A 279 -----NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL----------KLKSLKRLTFTSN-KGGNAF 341 (570)
T ss_dssp -----GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC----------BCSSCCEEEEESC-BSCCBC
T ss_pred -----cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc----------cccccCEEeCcCC-cccccc
Confidence 1122223333333333332 24455 788888888877643211 3578888888884 444332
Q ss_pred hhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceec
Q 005004 296 CEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLN 375 (720)
Q Consensus 296 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~ 375 (720)
+. ..+++|++|++++|. +..... .......+++|+++++++|.-.. +|..
T Consensus 342 ~~-----~~~~~L~~L~l~~n~-l~~~~~---------------~~~~~~~~~~L~~L~l~~n~l~~----~~~~----- 391 (570)
T 2z63_A 342 SE-----VDLPSLEFLDLSRNG-LSFKGC---------------CSQSDFGTTSLKYLDLSFNGVIT----MSSN----- 391 (570)
T ss_dssp CC-----CBCTTCCEEECCSSC-CBEEEE---------------EEHHHHTCSCCCEEECCSCSEEE----EEEE-----
T ss_pred cc-----ccCCCCCEEeCcCCc-cCcccc---------------ccccccccCccCEEECCCCcccc----cccc-----
Confidence 11 567888888888875 322210 01112245677777777764221 2222
Q ss_pred cCCCCCCcccccccceeeeeeecCccccc-ccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchh
Q 005004 376 LGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG 454 (720)
Q Consensus 376 ~~~~~~L~~l~l~~~~l~~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 454 (720)
+..+++|+.+++++|.+. +..+ ..+..+++|+.|++++|. +.. ..+..+..+++|++|++++|.+.....
T Consensus 392 ~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLIYLDISHTH-TRV-AFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp EETCTTCCEEECTTSEEE-------SCTTSCTTTTCTTCCEEECTTSC-CEE-CCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccccCCCCEEEccCCccc-------cccchhhhhcCCCCCEEeCcCCc-ccc-cchhhhhcCCcCcEEECcCCcCccccc
Confidence 567888999999988874 3333 367789999999999984 333 255667889999999999998764333
Q ss_pred hHHhhcCCCCCeeecCCcccCCh-hHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch
Q 005004 455 LYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 455 ~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~ 527 (720)
+..+..+++|++|++++|.++++ |..+..+++|+.|++++|+ +++..+..+ ..+++|+.|++++|.++.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIF---DRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHh---hcccCCcEEEecCCcccC
Confidence 56788899999999999999986 5588899999999999987 777655444 788999999999998764
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.1e-33 Score=311.96 Aligned_cols=192 Identities=17% Similarity=0.085 Sum_probs=148.4
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
+++++|||++|.|+.+.+.+|+++++|++|+|++|.+....++++.++++|++|+|++|++..++ .++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37899999999999998999999999999999999997666778999999999999999999887 36899999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC----ccceeec
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA----NLRILNS 155 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~----~L~~L~l 155 (720)
++|.+. ..++++++|++|++++|. ++...+|..+..+++|++|++++|. +....+..+. .++ ....+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~-~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR-VLHQMPLLNLSLDL 208 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH-HHHTCTTCCCEEEC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc-cccccccccc-chhhhhhhhhhhhc
Confidence 999887 357899999999999985 6645567888999999999999997 5544333332 232 3446777
Q ss_pred cCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEecc
Q 005004 156 SYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 202 (720)
Q Consensus 156 ~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 202 (720)
+.+. .++........++.+++.+...........+..+..++...+.
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 7765 4555555566677788877322233444556666777665553
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4e-33 Score=316.22 Aligned_cols=267 Identities=14% Similarity=0.127 Sum_probs=178.9
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEe-CCCccCCccccc-----------------------------------
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNV-NDATLGNGVQEI----------------------------------- 51 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l-~~~~l~~~~~~~----------------------------------- 51 (720)
.+++.|+|+++.+++.+|.+|+++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57889999999999999999999999999999 777654331110
Q ss_pred ----------------ccccCCCcEEEccc--ccceeee---ccCCCccEEeccCcchHH--------------------
Q 005004 52 ----------------PINHDQLRRLEITK--CRVMRVS---IRCPQLEHLSLKRSNMAQ-------------------- 90 (720)
Q Consensus 52 ----------------~~~l~~L~~L~l~~--~~~~~~~---~~~~~L~~L~l~~~~~~~-------------------- 90 (720)
......++.+.+.. |.+..+| +++++|++|++++|.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 01112233333333 5666565 357888888888887654
Q ss_pred -H--HhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCch-hhHHHHHHhcC-------ccceeeccCCC
Q 005004 91 -A--VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALSCA-------NLRILNSSYCP 159 (720)
Q Consensus 91 -~--~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~l~-------~L~~L~l~~~~ 159 (720)
. |.++++|++|++++|. +. ..+|..++++++|++|++++|..+++ ..+..+. .++ +|+.|++++|.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~-l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCP-NM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCT-TC-CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSC
T ss_pred hhhhhccCCCCCEEECcCCC-CC-ccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCc
Confidence 2 3488999999999885 33 35678889999999999999964665 5666665 554 99999999987
Q ss_pred --CCcc--ccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhh
Q 005004 160 --NISL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 235 (720)
Q Consensus 160 --~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~ 235 (720)
.+|. .++++++|+.|++++ +.++ ..+ .+..+++|++|++++|.+. .+|..
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~-N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~---------------------- 613 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVH-NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED---------------------- 613 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTT-SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT----------------------
T ss_pred CCccCChhhhhcCCCCCEEECCC-CCcc-cch-hhcCCCcceEEECcCCccc-cchHH----------------------
Confidence 7787 788999999999998 4677 333 7888899999999998765 44432
Q ss_pred cccceeeccCCCc-ccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCC--CCCCccEEE
Q 005004 236 MMLSSIMVSNCAA-LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG--GCPMLKSLV 312 (720)
Q Consensus 236 ~~l~~l~~~~~~~-L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~--~~~~L~~L~ 312 (720)
+..+++ |+.|++++|.++.. +..+... ..++|+.|++++ |.+.+..+....... ..++|++|+
T Consensus 614 -------l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~-----~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 614 -------FCAFTDQVEGLGFSHNKLKYI-PNIFNAK-----SVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp -------SCEECTTCCEEECCSSCCCSC-CSCCCTT-----CSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred -------HhhccccCCEEECcCCCCCcC-chhhhcc-----ccCCCCEEECcC-CcCCCccccchhhhccccCCCcCEEE
Confidence 233344 55666666655522 1111111 123466677766 455554332221112 234666676
Q ss_pred eccCC
Q 005004 313 LDNCE 317 (720)
Q Consensus 313 l~~~~ 317 (720)
+++|.
T Consensus 680 Ls~N~ 684 (876)
T 4ecn_A 680 LSYNE 684 (876)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 66664
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-33 Score=309.28 Aligned_cols=441 Identities=14% Similarity=0.133 Sum_probs=268.9
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccC------C---------------------------ccccccc-
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG------N---------------------------GVQEIPI- 53 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~------~---------------------------~~~~~~~- 53 (720)
.+++.|+|+++.+++.+|.+|+++++|++|+|++|.+. + .+|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47899999999999999999999999999999999651 1 0011111
Q ss_pred ------------------ccCCCcEEEcc--cccceeee---ccCCCccEEeccCcchHH--------------------
Q 005004 54 ------------------NHDQLRRLEIT--KCRVMRVS---IRCPQLEHLSLKRSNMAQ-------------------- 90 (720)
Q Consensus 54 ------------------~l~~L~~L~l~--~~~~~~~~---~~~~~L~~L~l~~~~~~~-------------------- 90 (720)
....++.+.+. .|.+..+| +++++|++|++++|.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 01112222222 35555555 358888888888887654
Q ss_pred -HHh--cCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCch-hhHHHHHHhc------CccceeeccCCC-
Q 005004 91 -AVL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALSC------ANLRILNSSYCP- 159 (720)
Q Consensus 91 -~~~--~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~l------~~L~~L~l~~~~- 159 (720)
.+. ++++|++|++++|. +. ..+|..++++++|++|++++|..+++ ..+..+. .+ ++|++|++++|.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCP-NL-TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCT-TC-SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCC
T ss_pred hhhhhcccCCCCEEEecCCc-CC-ccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcC
Confidence 233 89999999999986 44 35788899999999999999975666 6777776 54 899999999998
Q ss_pred -CCcc--ccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhc
Q 005004 160 -NISL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 236 (720)
Q Consensus 160 -~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~ 236 (720)
.+|. .++++++|++|++++ +.+++..+ .+..+++|++|++++|.+. .+|..
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~-N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~----------------------- 371 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLY-NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPAN----------------------- 371 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCS-CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTT-----------------------
T ss_pred CccCchhhhccCCCCCEEeCcC-CcCccchh-hhCCCCCCCEEECCCCccc-cccHh-----------------------
Confidence 7888 789999999999999 57775555 8888999999999998655 44432
Q ss_pred ccceeeccCCCc-ccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCC----CCCCCccEE
Q 005004 237 MLSSIMVSNCAA-LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG----GGCPMLKSL 311 (720)
Q Consensus 237 ~l~~l~~~~~~~-L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----~~~~~L~~L 311 (720)
+..+++ |+++++++|.++.. +..+... .+++|++|++++ |.+++..+..+... ..+++|++|
T Consensus 372 ------l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~-----~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 372 ------FCGFTEQVENLSFAHNKLKYI-PNIFDAK-----SVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ------SEEECTTCCEEECCSSCCSSC-CSCCCTT-----CSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred ------hhhhcccCcEEEccCCcCccc-chhhhhc-----ccCccCEEECcC-CcCCCcchhhhcccccccccCCCCCEE
Confidence 334455 67777777776632 2211111 234678888877 57766655544210 155677778
Q ss_pred EeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccce
Q 005004 312 VLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALH 391 (720)
Q Consensus 312 ~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~ 391 (720)
++++|. ++.++. .+...+++|+++++++ |.
T Consensus 439 ~Ls~N~-l~~lp~-----------------~~~~~l~~L~~L~Ls~--------------------------------N~ 468 (636)
T 4eco_A 439 NLSNNQ-ISKFPK-----------------ELFSTGSPLSSINLMG--------------------------------NM 468 (636)
T ss_dssp ECCSSC-CCSCCT-----------------HHHHTTCCCSEEECCS--------------------------------SC
T ss_pred ECcCCc-cCcCCH-----------------HHHccCCCCCEEECCC--------------------------------CC
Confidence 777775 222211 0011123333444333 33
Q ss_pred eeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhc--cCCCccEEeecCCCCCCchhhHHhhcCCCCCeeec
Q 005004 392 MVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTT--SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDL 469 (720)
Q Consensus 392 l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 469 (720)
++.+...........+.++++|+.|++++| .++. ++..+. .+++|+.|++++|.+... +..+..+++|++|++
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~L 543 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK--LSDDFRATTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGI 543 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCB--CCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCSSCCEEEC
T ss_pred CCCcCHHHhccccccccccCCccEEECcCC-cCCc--cChhhhhccCCCcCEEECCCCCCCCc--ChhhhcCCCCCEEEC
Confidence 310000000000001112235666666665 3432 444443 566666666666665542 445556666666666
Q ss_pred C------CcccC-ChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchH----HHHHHHhhCC
Q 005004 470 S------YTFLT-NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS----AIEELLAYCT 538 (720)
Q Consensus 470 ~------~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~----~~~~~l~~~~ 538 (720)
+ +|++. .+|..+..+++|+.|++++|+ ++.+ +..+ .++|+.|++++|++... ..+.......
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i-p~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ 616 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKV-NEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBC-CSCC-----CTTCCEEECCSCTTCEEECTTTHHHHHTTCC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCcc-CHhH-----hCcCCEEECcCCCCccccHHhcchhhhcccc
Confidence 3 34444 356667777777777777766 4433 2221 36777777777755431 2333333222
Q ss_pred C---CcEEeccCccCcc
Q 005004 539 H---LTHVSLNGCGNMH 552 (720)
Q Consensus 539 ~---L~~L~l~~~~~l~ 552 (720)
. .+..++.+|+.++
T Consensus 617 ~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 617 MLFYDKTQDIRGCDALD 633 (636)
T ss_dssp EEECCTTSEEESCGGGC
T ss_pred eeecCCccccCCCcccc
Confidence 2 2444667777653
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.7e-32 Score=301.11 Aligned_cols=121 Identities=14% Similarity=0.218 Sum_probs=71.8
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec-cCCCccEEeccCc
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSLKRS 86 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~L~~L~l~~~ 86 (720)
+++++|++++|.+++..+++|..+++|++|++++|.+.+..|+.+.++++|++|++++|++..++. .+++|++|++++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N 100 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence 566677777776666666666677777777777776655556666666777777777766665553 3555555555555
Q ss_pred chH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCC--CEEEecCCC
Q 005004 87 NMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL--ESLDMSNCS 133 (720)
Q Consensus 87 ~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L--~~L~l~~~~ 133 (720)
.+. ..++++++|++|++++|. ++. ..+..+++| ++|++++|.
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTH-LEK----SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESS-CCG----GGGGGGTTSCEEEEEEEECT
T ss_pred ccccccchhhhccCCcceEEEecCcc-cch----hhccccccceeeEEEeeccc
Confidence 443 344555555555555553 332 123444444 555555554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.4e-32 Score=300.05 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=103.8
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCc
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 86 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~ 86 (720)
++||+++|.++. +|..+. ++|++|++++|.+.+..|..+.++++|++|++++|++..+. +++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 579999999984 565554 89999999999997777778899999999999999998774 35788888888888
Q ss_pred chH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCcc--ceeeccCC
Q 005004 87 NMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL--RILNSSYC 158 (720)
Q Consensus 87 ~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L--~~L~l~~~ 158 (720)
.+. +.. .+++|++|++++|. ++...+|..++.+++|++|++++|. +... .+. .+++| +.|++++|
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~-~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVL-PIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGG-GGTTSCEEEEEEEEC
T ss_pred ceeecCcc-ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cchh---hcc-ccccceeeEEEeecc
Confidence 776 111 67888888888875 5533456777888888888888876 5442 122 45555 66666665
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8.7e-31 Score=292.84 Aligned_cols=409 Identities=11% Similarity=0.130 Sum_probs=297.9
Q ss_pred CCCcEEEeCCCccCCcccccccccCCCcEEEcccccce------e-------e---------------------e-----
Q 005004 32 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM------R-------V---------------------S----- 72 (720)
Q Consensus 32 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~------~-------~---------------------~----- 72 (720)
.+++.|+|+++.+.+.+|+.++++++|++|++++|.+. . + +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999999999999999999999999999999651 0 0 0
Q ss_pred -----------------ccCCCccEEecc--Ccc---hHHHHhcCCCceEEeeccccCcchh----------------hH
Q 005004 73 -----------------IRCPQLEHLSLK--RSN---MAQAVLNCPLLHLLDIASCHKLSDA----------------AI 114 (720)
Q Consensus 73 -----------------~~~~~L~~L~l~--~~~---~~~~~~~l~~L~~L~l~~~~~l~~~----------------~l 114 (720)
.....++.+.+. .|. +...+.++++|++|++++|. ++.. .+
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 001122222222 222 33678999999999999996 7631 17
Q ss_pred HHHhh--cCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-----CCccccccC------CcCcEEeccCCCC
Q 005004 115 RLAAT--SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-----NISLESVRL------PMLTVLQLHSCEG 181 (720)
Q Consensus 115 ~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~~------~~L~~L~l~~~~~ 181 (720)
|..++ ++++|++|++++|. +.+..+..+. .+++|++|++++|. .+|..++++ ++|++|+++++ .
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~ 316 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-N 316 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCT-TCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-C
T ss_pred chhhhhcccCCCCEEEecCCc-CCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-c
Confidence 88888 99999999999998 5666776676 89999999999996 467777776 99999999994 7
Q ss_pred CchhhHH--HhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcc
Q 005004 182 ITSASMA--AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSL 259 (720)
Q Consensus 182 l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~ 259 (720)
++ ..|. .+..+++|++|++++|.+.+.+| . +..+++|+.+++++|.+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-----------------------------~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-----------------------------FGSEIKLASLNLAYNQI 365 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-----------------------------CEEEEEESEEECCSSEE
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-----------------------------hCCCCCCCEEECCCCcc
Confidence 77 4555 89999999999999998776555 2 33445678888888887
Q ss_pred cccccccchhhHHHHhhCCC-ceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCC
Q 005004 260 QKLSLQKQENLTSLALQCQC-LQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCR 338 (720)
Q Consensus 260 ~~~~~~~~~~l~~l~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~ 338 (720)
+.. +..+. .+++ |++|++++ |.++. ++..+. ...+++|++|++++|.-...+
T Consensus 366 ~~l-p~~l~-------~l~~~L~~L~Ls~-N~l~~-lp~~~~-~~~l~~L~~L~Ls~N~l~~~~---------------- 418 (636)
T 4eco_A 366 TEI-PANFC-------GFTEQVENLSFAH-NKLKY-IPNIFD-AKSVSVMSAIDFSYNEIGSVD---------------- 418 (636)
T ss_dssp EEC-CTTSE-------EECTTCCEEECCS-SCCSS-CCSCCC-TTCSSCEEEEECCSSCTTTTT----------------
T ss_pred ccc-cHhhh-------hhcccCcEEEccC-CcCcc-cchhhh-hcccCccCEEECcCCcCCCcc----------------
Confidence 732 22222 3477 99999999 57874 334331 123458999999998621111
Q ss_pred ccccccccCCcccEEeccCCCccccccccccccc--eeccCCCCCCcccccccceeeeeeecCccccccc-ccCCCCccE
Q 005004 339 AITALELKCPILEKVCLDGCDHIESASFVPVALQ--SLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA-YINCPLLTS 415 (720)
Q Consensus 339 ~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~--~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~-~~~~~~L~~ 415 (720)
|..+. ......+++|+.+++++|.+ ..+|.. +..+++|+.
T Consensus 419 -----------------------------p~~l~~~~~~~~~~~~L~~L~Ls~N~l--------~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 419 -----------------------------GKNFDPLDPTPFKGINVSSINLSNNQI--------SKFPKELFSTGSPLSS 461 (636)
T ss_dssp -----------------------------TCSSCTTCSSCCCCCCEEEEECCSSCC--------CSCCTHHHHTTCCCSE
T ss_pred -----------------------------hhhhcccccccccCCCCCEEECcCCcc--------CcCCHHHHccCCCCCE
Confidence 11110 00012455677777777776 455554 446899999
Q ss_pred EeccCCCCCcchhhhhh-hccC-------CCccEEeecCCCCCCchhhHHhh--cCCCCCeeecCCcccCChhHHHhccc
Q 005004 416 LDASFCSQLKDDCLSAT-TTSC-------PLIESLILMSCQSIGPDGLYSLR--SLQNLTMLDLSYTFLTNLEPVFESCL 485 (720)
Q Consensus 416 L~l~~~~~l~~~~~~~~-~~~l-------~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~ 485 (720)
|++++| .++. ++.. +... ++|+.|++++|.+... +..+. .+++|++|++++|.++++|..+..++
T Consensus 462 L~Ls~N-~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 536 (636)
T 4eco_A 462 INLMGN-MLTE--IPKNSLKDENENFKNTYLLTSIDLRFNKLTKL--SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536 (636)
T ss_dssp EECCSS-CCSB--CCSSSSEETTEECTTGGGCCEEECCSSCCCBC--CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCS
T ss_pred EECCCC-CCCC--cCHHHhccccccccccCCccEEECcCCcCCcc--ChhhhhccCCCcCEEECCCCCCCCcChhhhcCC
Confidence 999998 5553 4432 3322 3999999999998743 45665 89999999999999999998999999
Q ss_pred cccEEEcCCCC-----CCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCc
Q 005004 486 QLKVLKLQACK-----YLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 551 (720)
Q Consensus 486 ~L~~L~l~~~~-----~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l 551 (720)
+|+.|++++|+ .+.+..+..+ ..+++|+.|++++|++.. ++..+ .++|+.|++++|+..
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGI---TLCPSLTQLQIGSNDIRK--VNEKI--TPNISVLDIKDNPNI 600 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCCCB--CCSCC--CTTCCEEECCSCTTC
T ss_pred CCCEEECCCCcccccCcccccChHHH---hcCCCCCEEECCCCcCCc--cCHhH--hCcCCEEECcCCCCc
Confidence 99999996532 2444445544 679999999999999954 45443 389999999999744
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3e-30 Score=291.29 Aligned_cols=484 Identities=16% Similarity=0.102 Sum_probs=306.9
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCC
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQ 77 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~ 77 (720)
.+|+++++|++|+|++|.|+++.+++|+++++|++|+|++|.+....+.++.++++|++|++++|++..++ +++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 46899999999999999999999999999999999999999996655677899999999999999998776 46899
Q ss_pred ccEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCC----CCEEEecCCCCCchhhHHHHHHhcC
Q 005004 78 LEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQ----LESLDMSNCSCVSDESLREIALSCA 148 (720)
Q Consensus 78 L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~----L~~L~l~~~~~l~~~~~~~~~~~l~ 148 (720)
|++|++++|.+. ..+.++++|++|++++|. ++.. .+..+..+++ ...++++.+. +....+.. . ...
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~-~-~~~ 224 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI-YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA-F-KEI 224 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE-CGGGGHHHHTCTTCCCEEECTTCC-CCEECTTT-T-TTC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc-ccccccchhhhhhhhhhhhcccCc-ccccCccc-c-cch
Confidence 999999999875 567889999999999985 5521 2333333333 3467777775 44322222 2 334
Q ss_pred ccceeeccCCCC----CccccccCCcCcEEeccCC-----CCCchhhHHHhhccccccEEeccCCcccc---cccccccc
Q 005004 149 NLRILNSSYCPN----ISLESVRLPMLTVLQLHSC-----EGITSASMAAISHSYMLEVLELDNCNLLT---SVSLELPR 216 (720)
Q Consensus 149 ~L~~L~l~~~~~----~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~~ 216 (720)
.++.+++.++.. .+..+..+..++...+... ..+.......+.....+....+..+.... ..+..+
T Consensus 225 ~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-- 302 (635)
T 4g8a_A 225 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF-- 302 (635)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT--
T ss_pred hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh--
Confidence 556666665531 1122334444444333210 11222222233334444444443221111 111111
Q ss_pred ccceecccccccccchhhhccccee-eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhh
Q 005004 217 LQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSV 295 (720)
Q Consensus 217 L~~l~~~~~~~l~~~~l~~~~l~~l-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~ 295 (720)
....++..+....+.+..+ .+..+..++.+++.++.+...... .+..|+.+++.. +......
T Consensus 303 ------~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~L~~l~l~~-n~~~~~~ 365 (635)
T 4g8a_A 303 ------NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----------KLKSLKRLTFTS-NKGGNAF 365 (635)
T ss_dssp ------GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC----------BCTTCCEEEEES-CCSCCBC
T ss_pred ------hhhcccccccccccccccccccccchhhhhhhcccccccCcCcc----------cchhhhhccccc-ccCCCCc
Confidence 1111222222222222222 455667788888888777654322 236777777776 3443321
Q ss_pred hhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceec
Q 005004 296 CEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLN 375 (720)
Q Consensus 296 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~ 375 (720)
....+++|+.++++++. +..... .........+++.+++..+.... .+. .
T Consensus 366 -----~~~~l~~L~~L~ls~n~-l~~~~~---------------~~~~~~~~~~L~~L~~~~~~~~~----~~~-----~ 415 (635)
T 4g8a_A 366 -----SEVDLPSLEFLDLSRNG-LSFKGC---------------CSQSDFGTISLKYLDLSFNGVIT----MSS-----N 415 (635)
T ss_dssp -----CCCBCTTCCEEECCSSC-CBEEEE---------------CCHHHHSCSCCCEEECCSCSEEE----ECS-----C
T ss_pred -----ccccccccccchhhccc-cccccc---------------cccchhhhhhhhhhhcccccccc----ccc-----c
Confidence 12457788888888765 221110 01112234556666665543221 111 1
Q ss_pred cCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhh
Q 005004 376 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 455 (720)
Q Consensus 376 ~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 455 (720)
+..+++|+.+++..+.... ..-...+..+++++.++++.|. +.. ..+..+..++.++.|++++|.......+
T Consensus 416 ~~~l~~L~~l~l~~~~~~~------~~~~~~~~~l~~l~~l~ls~n~-l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~ 487 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQ------MSEFSVFLSLRNLIYLDISHTH-TRV-AFNGIFNGLSSLEVLKMAGNSFQENFLP 487 (635)
T ss_dssp CTTCTTCCEEECTTSEEES------TTSSCTTTTCTTCCEEECTTSC-CEE-CCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccccccchhhhhccccc------cccccccccccccccccccccc-ccc-ccccccccchhhhhhhhhhcccccccCc
Confidence 4566777777777665421 1122356678888899998873 332 2455577888899999998876554435
Q ss_pred HHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHH
Q 005004 456 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 534 (720)
Q Consensus 456 ~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l 534 (720)
..+..+++|++|++++|+++++++ .|.++++|++|++++|+ +++..+..+ ..+++|+.|++++|+++. ..+..+
T Consensus 488 ~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~---~~l~~L~~L~Ls~N~l~~-~~~~~l 562 (635)
T 4g8a_A 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPY---KCLNSLQVLDYSLNHIMT-SKKQEL 562 (635)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGG---TTCTTCCEEECTTSCCCB-CCSSCT
T ss_pred hhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHH---hCCCCCCEEECCCCcCCC-CCHHHH
Confidence 567888899999999999888644 78889999999999876 777655555 778899999999998887 555666
Q ss_pred hhC-CCCcEEeccCccCcc
Q 005004 535 AYC-THLTHVSLNGCGNMH 552 (720)
Q Consensus 535 ~~~-~~L~~L~l~~~~~l~ 552 (720)
..+ ++|+.|++++|+-..
T Consensus 563 ~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCCCTTCCEEECTTCCBCC
T ss_pred HhhhCcCCEEEeeCCCCcc
Confidence 666 679999999887543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.2e-30 Score=285.38 Aligned_cols=433 Identities=14% Similarity=0.105 Sum_probs=247.6
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec-cCCCccEEeccCc
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSLKRS 86 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~L~~L~l~~~ 86 (720)
++++.|++++|.+++..+++|.++++|++|++++|.+.+..|+.+.++++|++|++++|++..++. .+++|++|++++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N 131 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 456666666666666666666666666666666666655455566666666666666666665553 4666666666666
Q ss_pred chH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCC--CEEEecCCCCC--chhhHHHHHHhcC-ccceeecc
Q 005004 87 NMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL--ESLDMSNCSCV--SDESLREIALSCA-NLRILNSS 156 (720)
Q Consensus 87 ~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L--~~L~l~~~~~l--~~~~~~~~~~~l~-~L~~L~l~ 156 (720)
.+. ..++++++|++|++++|. ++.. .+..+++| ++|++++|. + ....+..+. .+. ..-.++++
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~----~~~~l~~L~L~~L~L~~n~-l~~~~~~~~~l~-~l~~~~l~l~l~ 204 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL----DLLPVAHLHLSCILLDLVS-YHIKGGETESLQ-IPNTTVLHLVFH 204 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSB-CCTT----TTGGGTTSCEEEEEEEESS-CCCCSSSCCEEE-ECCEEEEEEEEC
T ss_pred CccccCchHhhcccCcccEEecCCCc-cccC----chhhhhhceeeEEEeeccc-ccccccCccccc-ccCcceEEEEec
Confidence 554 345666666666666653 4421 23334444 666666664 3 222221111 111 00122333
Q ss_pred CCC---CCcc-ccccCCcCcEEeccCCCCC---chhhHHHhhccccccEEeccCCccccccccc------cccccceecc
Q 005004 157 YCP---NISL-ESVRLPMLTVLQLHSCEGI---TSASMAAISHSYMLEVLELDNCNLLTSVSLE------LPRLQNIRLV 223 (720)
Q Consensus 157 ~~~---~~~~-~~~~~~~L~~L~l~~~~~l---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------~~~L~~l~~~ 223 (720)
++. .++. .+.++++|+.++++++... .......+..+++|+.+++.++......... .++++++++.
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 333 1222 2345678888888873111 1123345667788888888766544322111 1245555444
Q ss_pred cccccccchhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhc
Q 005004 224 HCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFS 300 (720)
Q Consensus 224 ~~~~l~~~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~ 300 (720)
++. +.+.....+ ....+..|..+++..+.+ . .+. ..+..+ ....+|++|++++| .+.... +
T Consensus 285 ~n~------l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~--~p~-~~~~~~-~~~~~L~~L~l~~n-~~~~~~---~- 348 (562)
T 3a79_B 285 NLT------ITERIDREEFTYSETALKSLMIEHVKNQVF-L--FSK-EALYSV-FAEMNIKMLSISDT-PFIHMV---C- 348 (562)
T ss_dssp EEE------ECSCCCCCCCCCCSCSCCEEEEEEEEECCC-S--SCH-HHHHHH-HHTCCCSEEEEESS-CCCCCC---C-
T ss_pred ccE------eeccccchhhhcccccchheehhhccccee-e--cCh-hhhhhh-hccCcceEEEccCC-Cccccc---C-
Confidence 431 111111110 014445555555555544 1 110 111111 12367999999984 554322 1
Q ss_pred CCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCC
Q 005004 301 DGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICP 380 (720)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~ 380 (720)
...+++|++|++++|. +.. ..|.. +.+++
T Consensus 349 -~~~l~~L~~L~l~~n~-l~~--------------------------------------------~~~~~-----~~~l~ 377 (562)
T 3a79_B 349 -PPSPSSFTFLNFTQNV-FTD--------------------------------------------SVFQG-----CSTLK 377 (562)
T ss_dssp -CSSCCCCCEEECCSSC-CCT--------------------------------------------TTTTT-----CCSCS
T ss_pred -ccCCCCceEEECCCCc-ccc--------------------------------------------chhhh-----hcccC
Confidence 1577889999999886 221 01121 45666
Q ss_pred CCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhc
Q 005004 381 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 460 (720)
Q Consensus 381 ~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 460 (720)
+|+.+++++|.++.+ ..+|..+..+++|+.|++++| .+........+..+++|++|++++|.+.+.. +..+.
T Consensus 378 ~L~~L~L~~N~l~~~-----~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~- 449 (562)
T 3a79_B 378 RLQTLILQRNGLKNF-----FKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLP- 449 (562)
T ss_dssp SCCEEECCSSCCCBT-----THHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCC-
T ss_pred CCCEEECCCCCcCCc-----ccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhc-
Confidence 777777777766311 234456778888888888887 4443223334667888999999888875432 22221
Q ss_pred CCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch
Q 005004 461 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 461 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~ 527 (720)
++|++|++++|+++.+|..+..+++|+.|++++|+ ++.+....+ ..+++|+.|++++|++..
T Consensus 450 -~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~---~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVF---DRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp -TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTST---TTCTTCCCEECCSCCBCC
T ss_pred -CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHH---hcCCCCCEEEecCCCcCC
Confidence 68999999999998888866688999999999877 765433223 678889999999887764
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=9.1e-30 Score=288.78 Aligned_cols=405 Identities=14% Similarity=0.134 Sum_probs=261.4
Q ss_pred CCCcEEEeCCCccCCcccccccccCCCcEEEc-ccccceee-e-------------------------------------
Q 005004 32 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEI-TKCRVMRV-S------------------------------------- 72 (720)
Q Consensus 32 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l-~~~~~~~~-~------------------------------------- 72 (720)
.++..|+|+++.+.+.+|+.++++++|++|++ ++|.+... +
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 77754211 0
Q ss_pred -----------------ccCCCccEEeccC--cc---hHHHHhcCCCceEEeeccccCcchh----------------hH
Q 005004 73 -----------------IRCPQLEHLSLKR--SN---MAQAVLNCPLLHLLDIASCHKLSDA----------------AI 114 (720)
Q Consensus 73 -----------------~~~~~L~~L~l~~--~~---~~~~~~~l~~L~~L~l~~~~~l~~~----------------~l 114 (720)
.....++.+.+.. |. +...+.++++|+.|++++|. ++.. .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccC
Confidence 0111222222222 32 33678999999999999996 7731 27
Q ss_pred HHHhh--cCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-----CCccccccCC-------cCcEEeccCCC
Q 005004 115 RLAAT--SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-----NISLESVRLP-------MLTVLQLHSCE 180 (720)
Q Consensus 115 ~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~~~-------~L~~L~l~~~~ 180 (720)
|..++ ++++|++|++++|. +....+..+. .+++|+.|++++|. .+|..+++++ +|+.|++++ +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCP-NMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-N 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCT-TCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-S
T ss_pred ChhhhhccCCCCCEEECcCCC-CCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-C
Confidence 88877 99999999999997 5556676666 89999999999996 4666666555 999999999 4
Q ss_pred CCchhhHH--HhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCc
Q 005004 181 GITSASMA--AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNS 258 (720)
Q Consensus 181 ~l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~ 258 (720)
.++ ..|. .+..+++|++|++++|.+. .+| .+..+++|+.|++++|.
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp------------------------------~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE------------------------------AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC------------------------------CCCTTSEESEEECCSSC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch------------------------------hhcCCCcceEEECcCCc
Confidence 777 4555 8999999999999998654 333 25566788999999998
Q ss_pred ccccccccchhhHHHHhhCCC-ceEEecCCCcccchhhhhhhcCCCCC--CCccEEEeccCCCCceeccccCCceeEeec
Q 005004 259 LQKLSLQKQENLTSLALQCQC-LQEVDLTDCESLTNSVCEVFSDGGGC--PMLKSLVLDNCEGLTVVRFCSTSLVSLSLV 335 (720)
Q Consensus 259 ~~~~~~~~~~~l~~l~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~ 335 (720)
++. .+..+. .+++ |+.|++++ |.++. ++..+ ... ++|+.|++++|.-...++.....
T Consensus 607 l~~-lp~~l~-------~l~~~L~~L~Ls~-N~L~~-lp~~~---~~~~~~~L~~L~Ls~N~l~g~ip~l~~~------- 666 (876)
T 4ecn_A 607 IEE-IPEDFC-------AFTDQVEGLGFSH-NKLKY-IPNIF---NAKSVYVMGSVDFSYNKIGSEGRNISCS------- 666 (876)
T ss_dssp CSC-CCTTSC-------EECTTCCEEECCS-SCCCS-CCSCC---CTTCSSCEEEEECCSSCTTTTSSSCSSC-------
T ss_pred ccc-chHHHh-------hccccCCEEECcC-CCCCc-Cchhh---hccccCCCCEEECcCCcCCCccccchhh-------
Confidence 873 233332 3477 99999999 57873 33433 333 45999999998622211100000
Q ss_pred CCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCccccccccc-------
Q 005004 336 GCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYI------- 408 (720)
Q Consensus 336 ~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~------- 408 (720)
.-....++|+.+++++|.-- .+|..+ +..+++|+.+++++|.+ ..+|..+.
T Consensus 667 ------l~~~~~~~L~~L~Ls~N~L~----~lp~~~----~~~l~~L~~L~Ls~N~L--------~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 667 ------MDDYKGINASTVTLSYNEIQ----KFPTEL----FATGSPISTIILSNNLM--------TSIPENSLKPKDGNY 724 (876)
T ss_dssp ------TTTCCCCCEEEEECCSSCCC----SCCHHH----HHTTCCCSEEECCSCCC--------SCCCTTSSSCTTSCC
T ss_pred ------hccccCCCcCEEEccCCcCC----ccCHHH----HccCCCCCEEECCCCcC--------CccChHHhccccccc
Confidence 00112346666666665421 233321 33556666666666665 23333221
Q ss_pred -CCCCccEEeccCCCCCcchhhhhhhc--cCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCC------cccC-Chh
Q 005004 409 -NCPLLTSLDASFCSQLKDDCLSATTT--SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY------TFLT-NLE 478 (720)
Q Consensus 409 -~~~~L~~L~l~~~~~l~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~-~l~ 478 (720)
++++|+.|++++| .++. ++..+. .+++|+.|++++|.+... +..+..+++|+.|++++ |.+. .+|
T Consensus 725 ~nl~~L~~L~Ls~N-~L~~--lp~~l~~~~l~~L~~L~Ls~N~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 725 KNTYLLTTIDLRFN-KLTS--LSDDFRATTLPYLSNMDVSYNCFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp TTGGGCCEEECCSS-CCCC--CCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred cccCCccEEECCCC-CCcc--chHHhhhccCCCcCEEEeCCCCCCcc--chhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 2236666666666 4442 444444 666666666666665542 44555666666666654 4443 345
Q ss_pred HHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccc
Q 005004 479 PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 526 (720)
Q Consensus 479 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~ 526 (720)
..+..+++|+.|++++|+ ++.+ +..+ .++|+.|++++|++.
T Consensus 800 ~~l~~L~~L~~L~Ls~N~-L~~I-p~~l-----~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSND-IRKV-DEKL-----TPQLYILDIADNPNI 840 (876)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBC-CSCC-----CSSSCEEECCSCTTC
T ss_pred HHHhcCCCCCEEECCCCC-CCcc-CHhh-----cCCCCEEECCCCCCC
Confidence 566666666666666665 4322 2211 246666666666554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-30 Score=288.40 Aligned_cols=463 Identities=14% Similarity=0.095 Sum_probs=296.6
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEe
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 82 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~ 82 (720)
+...++++++++.++. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|++..++ .++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4455789999999886 555443 78999999999987766778889999999999999998774 3578888999
Q ss_pred ccCcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCcc--ceeeccCC
Q 005004 83 LKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL--RILNSSYC 158 (720)
Q Consensus 83 l~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L--~~L~l~~~ 158 (720)
+++|.+. +.. .+++|++|++++|. ++...+|..++++++|++|++++|. +....+. .+++| +.|++++|
T Consensus 107 Ls~N~l~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~----~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 107 VSHNRLQNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLL----PVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTSCCCEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTG----GGTTSCEEEEEEEES
T ss_pred CCCCcCCccCcc-ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccCchh----hhhhceeeEEEeecc
Confidence 9888776 212 78888888888885 6533445678888888888888886 5542222 44455 88888776
Q ss_pred CC-----CccccccCCc-CcEEeccCCCCCch-hhHHHhhccccccEEeccCCccccccccccccccceecccccccccc
Q 005004 159 PN-----ISLESVRLPM-LTVLQLHSCEGITS-ASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADL 231 (720)
Q Consensus 159 ~~-----~~~~~~~~~~-L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~ 231 (720)
.. .+..+..+.. .-.+++.++ .+.. .....+..+++|+.+++++|... |..
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----------------~~~---- 237 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPN-SLFSVQVNMSVNALGHLQLSNIKLNDEN-----------------CQR---- 237 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSS-SCCCCCCEEEESSEEEEEEEEEECCSTT-----------------HHH----
T ss_pred cccccccCcccccccCcceEEEEecCc-cchhhhhhhcccccceEEEecccccccc-----------------cch----
Confidence 32 2223332220 012333332 2211 11112233455555555544210 000
Q ss_pred hhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEE
Q 005004 232 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 311 (720)
Q Consensus 232 ~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L 311 (720)
+.+ .+. .+...+.++.+++.++.+++...... ... ...++|++|++++ +.+++..+..+... ..++|+.|
T Consensus 238 -l~~-~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~---~~~-~~~~~L~~L~l~~-n~l~~~ip~~~~~~-~~~~L~~L 307 (562)
T 3a79_B 238 -LMT-FLS--ELTRGPTLLNVTLQHIETTWKCSVKL---FQF-FWPRPVEYLNIYN-LTITERIDREEFTY-SETALKSL 307 (562)
T ss_dssp -HHH-HHH--HHHSCSSCEEEEEEEEEECHHHHHHH---HHH-HTTSSEEEEEEEE-EEECSCCCCCCCCC-CSCSCCEE
T ss_pred -HHH-HHH--HHhccCcceEEEecCCcCcHHHHHHH---HHh-hhcccccEEEEec-cEeeccccchhhhc-ccccchhe
Confidence 000 000 35566777888887777665322221 111 1235999999998 57765544433111 12455555
Q ss_pred EeccCCCCc-eeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccc
Q 005004 312 VLDNCEGLT-VVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEAL 390 (720)
Q Consensus 312 ~l~~~~~l~-~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~ 390 (720)
.+.++..-. .++.. .+.. .....++++++++++.-... . ....+++|+.+++++|
T Consensus 308 ~~~~~~~~~~~~p~~-------------~~~~-~~~~~~L~~L~l~~n~~~~~------~----~~~~l~~L~~L~l~~n 363 (562)
T 3a79_B 308 MIEHVKNQVFLFSKE-------------ALYS-VFAEMNIKMLSISDTPFIHM------V----CPPSPSSFTFLNFTQN 363 (562)
T ss_dssp EEEEEEECCCSSCHH-------------HHHH-HHHTCCCSEEEEESSCCCCC------C----CCSSCCCCCEEECCSS
T ss_pred ehhhcccceeecChh-------------hhhh-hhccCcceEEEccCCCcccc------c----CccCCCCceEEECCCC
Confidence 554432100 11100 0000 01235678888887652211 0 0257788999999999
Q ss_pred eeeeeeecCcccccccccCCCCccEEeccCCCCCcc-hhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeec
Q 005004 391 HMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDL 469 (720)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 469 (720)
.++ +..+..+..+++|+.|++++| .++. ..++..+..+++|+.|++++|.+........+..+++|++|++
T Consensus 364 ~l~-------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 364 VFT-------DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CCC-------TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred ccc-------cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 884 567888899999999999998 5554 2345667899999999999999876332345778899999999
Q ss_pred CCcccCChhHHHhcc-ccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHH-HHhhCCCCcEEeccC
Q 005004 470 SYTFLTNLEPVFESC-LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEE-LLAYCTHLTHVSLNG 547 (720)
Q Consensus 470 ~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~-~l~~~~~L~~L~l~~ 547 (720)
++|.+++.. +..+ ++|+.|++++|. ++.+ +..+ ..+++|+.|++++|+++. ++. .+..+++|+.|++++
T Consensus 436 ~~n~l~~~~--~~~l~~~L~~L~L~~N~-l~~i-p~~~---~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 436 SSNMLTGSV--FRCLPPKVKVLDLHNNR-IMSI-PKDV---THLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CSSCCCGGG--GSSCCTTCSEEECCSSC-CCCC-CTTT---TSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCS
T ss_pred CCCCCCcch--hhhhcCcCCEEECCCCc-Cccc-Chhh---cCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecC
Confidence 999987522 2233 799999999986 7744 3333 578999999999999985 443 478899999999999
Q ss_pred ccCcc
Q 005004 548 CGNMH 552 (720)
Q Consensus 548 ~~~l~ 552 (720)
|+-..
T Consensus 507 N~~~c 511 (562)
T 3a79_B 507 NPWDC 511 (562)
T ss_dssp CCBCC
T ss_pred CCcCC
Confidence 97543
No 25
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.5e-27 Score=264.75 Aligned_cols=436 Identities=18% Similarity=0.225 Sum_probs=233.8
Q ss_pred HHHhcCCCceEEeeccccCcch-------------hhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCc-cceeec
Q 005004 90 QAVLNCPLLHLLDIASCHKLSD-------------AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCAN-LRILNS 155 (720)
Q Consensus 90 ~~~~~l~~L~~L~l~~~~~l~~-------------~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l 155 (720)
..+..+++|++|++++|+.+.+ .+++.....+++|++|++++|. +++..+..+...+++ |++|++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEEC
Confidence 5556677777777766543321 2344445567777777777775 666666655533333 555555
Q ss_pred cCCCCCccccccCCcCcEEeccCCCCCchhhHHHh-hccccccEEeccCCccccccccccccccceecccccccccchhh
Q 005004 156 SYCPNISLESVRLPMLTVLQLHSCEGITSASMAAI-SHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLR 234 (720)
Q Consensus 156 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~ 234 (720)
++| ..++......+ ..+++|++|++++|.+.+.....++.
T Consensus 146 ~~~---------------------~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~------------------ 186 (592)
T 3ogk_B 146 DKC---------------------SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE------------------ 186 (592)
T ss_dssp ESC---------------------EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH------------------
T ss_pred cCC---------------------CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH------------------
Confidence 544 22333223222 35677777777776433221100000
Q ss_pred hcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEec
Q 005004 235 AMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLD 314 (720)
Q Consensus 235 ~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~ 314 (720)
....+++|++|+++.|.+++. ....+..+...+++|+.|++++| .+.+.. ..+ ..+++|++|.++
T Consensus 187 -------~~~~~~~L~~L~L~~n~~~~~---~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~-~~~---~~~~~L~~L~l~ 251 (592)
T 3ogk_B 187 -------LAQHNTSLEVLNFYMTEFAKI---SPKDLETIARNCRSLVSVKVGDF-EILELV-GFF---KAAANLEEFCGG 251 (592)
T ss_dssp -------HHHHCCCCCEEECTTCCCSSC---CHHHHHHHHHHCTTCCEEECSSC-BGGGGH-HHH---HHCTTCCEEEEC
T ss_pred -------HHhcCCCccEEEeeccCCCcc---CHHHHHHHHhhCCCCcEEeccCc-cHHHHH-HHH---hhhhHHHhhccc
Confidence 123456677777777666532 12234444556788888888874 555532 333 466777777776
Q ss_pred cCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeee
Q 005004 315 NCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVV 394 (720)
Q Consensus 315 ~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~ 394 (720)
.+......
T Consensus 252 ~~~~~~~~------------------------------------------------------------------------ 259 (592)
T 3ogk_B 252 SLNEDIGM------------------------------------------------------------------------ 259 (592)
T ss_dssp BCCCCTTC------------------------------------------------------------------------
T ss_pred ccccccch------------------------------------------------------------------------
Confidence 53211000
Q ss_pred eeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhh-HHhhcCCCCCeeecCCcc
Q 005004 395 LELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL-YSLRSLQNLTMLDLSYTF 473 (720)
Q Consensus 395 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 473 (720)
...+..+..+++|+.|+++++ ....++..+..+++|++|++++|.+ ...+. ..+..+++|++|+++ +.
T Consensus 260 ------~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~l-~~~~~~~~~~~~~~L~~L~L~-~~ 328 (592)
T 3ogk_B 260 ------PEKYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYALL-ETEDHCTLIQKCPNLEVLETR-NV 328 (592)
T ss_dssp ------TTSSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCCC-CHHHHHHHHTTCTTCCEEEEE-GG
T ss_pred ------HHHHHHhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCcC-CHHHHHHHHHhCcCCCEEecc-Cc
Confidence 001111222334444444432 1122333344444455555544442 21111 223445555555555 22
Q ss_pred cC--ChhHHHhccccccEEEcCC----------CCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCc
Q 005004 474 LT--NLEPVFESCLQLKVLKLQA----------CKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLT 541 (720)
Q Consensus 474 ~~--~l~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~ 541 (720)
+. +++..+..|++|++|++++ |..+++.....+. ..+++|+.|+++.+.+++..+......+++|+
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA--QGCQELEYMAVYVSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH--HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH--hhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence 22 1333445566666666663 5556655444432 34666666666666666544444334466777
Q ss_pred EEeccCcc---CcccccccccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCC-ccccCCc
Q 005004 542 HVSLNGCG---NMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPP-QARCFHL 617 (720)
Q Consensus 542 ~L~l~~~~---~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~-~~~~~~L 617 (720)
+|++++|. .+++... +..++. +..|++|
T Consensus 407 ~L~l~~~~~~n~l~~~p~------------------------------------------------~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPL------------------------------------------------DNGVRSLLIGCKKL 438 (592)
T ss_dssp EEEEEECSCCSCCSSCCC------------------------------------------------HHHHHHHHHHCTTC
T ss_pred EEEEeecCCCccccCchH------------------------------------------------HHHHHHHHHhCCCC
Confidence 77776432 2221100 000001 2334555
Q ss_pred cEEEcCCCcC------hHHHHhhCCCccEEeccccc----chhhhhhcCCcccEEEeecccCChhhHHHHHhcCCCcceE
Q 005004 618 SSLNLSLSAN------LKEVDVACFNLCFLNLSNCC----SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETL 687 (720)
Q Consensus 618 ~~L~l~~~~~------l~~~~~~~~~L~~L~l~~~~----~L~~l~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 687 (720)
++|+++.|.+ +..+...+++|+.|++++|. .+..+...|++|++|++++|++++..++..+..+++|+.|
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 5555544332 22223346777777777775 3445556789999999999998878888888889999999
Q ss_pred eccCCcCCCchhHHHHHHhCCCcceee
Q 005004 688 DVRFCPKICSTSMGRLRAACPSLKRIF 714 (720)
Q Consensus 688 ~l~~c~~l~~~~~~~~~~~~p~l~~i~ 714 (720)
++++|. +++.+++.++..+|.+.-..
T Consensus 519 ~ls~n~-it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 519 WVQGYR-ASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp EEESCB-CCTTCTTGGGGCCTTEEEEE
T ss_pred ECcCCc-CCHHHHHHHHHhCCCcEEEE
Confidence 999997 88888888888888765443
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.1e-26 Score=259.72 Aligned_cols=437 Identities=20% Similarity=0.298 Sum_probs=240.5
Q ss_pred HHHhcCCCceEEeeccccCcchh-------------hHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeecc
Q 005004 90 QAVLNCPLLHLLDIASCHKLSDA-------------AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 156 (720)
Q Consensus 90 ~~~~~l~~L~~L~l~~~~~l~~~-------------~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 156 (720)
..+.++++|++|++++|..+.+. +++.....+++|++|++++|. +++..+..+...+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCC
Confidence 45666777777777776543322 234445566777777777776 6666666665455566555555
Q ss_pred CCCCCccccccCCcCcEEeccCCCCCchhhHHHhh-ccccccEEeccCCccccccccccccccceecccccccccchhhh
Q 005004 157 YCPNISLESVRLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 235 (720)
Q Consensus 157 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~ 235 (720)
+| ..+++.....+. .+++|++|++++|.+.+..+..++.
T Consensus 139 ~~---------------------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~------------------- 178 (594)
T 2p1m_B 139 SC---------------------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH------------------- 178 (594)
T ss_dssp SC---------------------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-------------------
T ss_pred Cc---------------------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-------------------
Confidence 54 334444333333 6778888888777643322211111
Q ss_pred cccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEecc
Q 005004 236 MMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 315 (720)
Q Consensus 236 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 315 (720)
....+++|++|+++.+. ... ....+..+...+++|++|++++|..+++ .+..+ ..+++|++|.+..
T Consensus 179 ------~~~~~~~L~~L~l~~~~-~~~---~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~---~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 179 ------FPDTYTSLVSLNISCLA-SEV---SFSALERLVTRCPNLKSLKLNRAVPLEK-LATLL---QRAPQLEELGTGG 244 (594)
T ss_dssp ------SCTTCCCCCEEECTTCC-SCC---CHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHH---HHCTTCSEEECSB
T ss_pred ------HhhcCCcCcEEEecccC-CcC---CHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHH---hcCCcceEccccc
Confidence 12356677777777665 111 1233444445578888888888755555 33444 4677788887766
Q ss_pred CCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCccc-ccccceeee
Q 005004 316 CEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL-GIEALHMVV 394 (720)
Q Consensus 316 ~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l-~l~~~~l~~ 394 (720)
+..- +. .+ .+. .++. .+.+|++|+.+ .+....
T Consensus 245 ~~~~--~~--~~-----------~~~------------------------~l~~-----~l~~~~~L~~Ls~~~~~~--- 277 (594)
T 2p1m_B 245 YTAE--VR--PD-----------VYS------------------------GLSV-----ALSGCKELRCLSGFWDAV--- 277 (594)
T ss_dssp CCCC--CC--HH-----------HHH------------------------HHHH-----HHHTCTTCCEEECCBTCC---
T ss_pred ccCc--cc--hh-----------hHH------------------------HHHH-----HHhcCCCcccccCCcccc---
Confidence 5410 00 00 000 0000 12333333332 111100
Q ss_pred eeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCccc
Q 005004 395 LELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFL 474 (720)
Q Consensus 395 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 474 (720)
...++..+..+++|+.|++++|. +++..+...+..+++|++|++.+| ..+.+.
T Consensus 278 -----~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l------------------- 330 (594)
T 2p1m_B 278 -----PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGL------------------- 330 (594)
T ss_dssp -----GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHH-------------------
T ss_pred -----hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHH-------------------
Confidence 02233333344555555555553 444444444445555555555554 111112
Q ss_pred CChhHHHhccccccEEEc--------CCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEecc
Q 005004 475 TNLEPVFESCLQLKVLKL--------QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLN 546 (720)
Q Consensus 475 ~~l~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~ 546 (720)
+.....+++|++|++ .+|..+++.....+. ..+++|+.|.++.+.+++..+......+++|+.|+++
T Consensus 331 ---~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~--~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 331 ---EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS--MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp ---HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH--HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred ---HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH--HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 222334555555555 334456665555442 2367777777777777764454544567778888877
Q ss_pred -----CccCcccccccccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcCC-ccccCCccEE
Q 005004 547 -----GCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPP-QARCFHLSSL 620 (720)
Q Consensus 547 -----~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~~-~~~~~~L~~L 620 (720)
+|..+++... +..++. +..|++|++|
T Consensus 406 ~~~~~~~~~l~~~~~------------------------------------------------~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPL------------------------------------------------DIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp ESSTTCCCTTTCCCT------------------------------------------------HHHHHHHHHHCTTCCEE
T ss_pred cccCCCcccccCCch------------------------------------------------hhHHHHHHhhCCCccEE
Confidence 3333321100 000011 2345566666
Q ss_pred EcCCCcChHH-----HHhhCCCccEEeccccc----chhhhhhcCCcccEEEeecccCChhhHHHHHhcCCCcceEeccC
Q 005004 621 NLSLSANLKE-----VDVACFNLCFLNLSNCC----SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 691 (720)
Q Consensus 621 ~l~~~~~l~~-----~~~~~~~L~~L~l~~~~----~L~~l~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~ 691 (720)
++++ .+.. +...+++|+.|++++|. ++..+...|++|++|++++|++++.++...+..+++|+.|++++
T Consensus 438 ~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 438 SLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp ECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred eecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 6654 2222 22347778888888776 34444456889999999999888777777777888999999999
Q ss_pred CcCCCchhHHHHHHhCCCcc
Q 005004 692 CPKICSTSMGRLRAACPSLK 711 (720)
Q Consensus 692 c~~l~~~~~~~~~~~~p~l~ 711 (720)
|+. +..+++.++..+|.++
T Consensus 516 ~~~-~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 516 CSV-SFGACKLLGQKMPKLN 534 (594)
T ss_dssp SCC-BHHHHHHHHHHCTTEE
T ss_pred CCC-CHHHHHHHHHhCCCCE
Confidence 864 7778888878888874
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.9e-27 Score=255.09 Aligned_cols=193 Identities=14% Similarity=0.156 Sum_probs=127.4
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcc-cccccccCCCcEEEcccccceeee----ccCCCccEEe
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGV-QEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 82 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~ 82 (720)
+++++|++++|.+++..+.+|.++++|++|++++|.+.+.+ +..+.++++|++|++++|++..+. +++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57889999999998888888999999999999988876555 456788889999999998887663 3577788888
Q ss_pred ccCcchH----HH--HhcCCCceEEeeccccCcchhhHHH-HhhcCCCCCEEEecCCCCCchhhHHHHHHhc--Ccccee
Q 005004 83 LKRSNMA----QA--VLNCPLLHLLDIASCHKLSDAAIRL-AATSCPQLESLDMSNCSCVSDESLREIALSC--ANLRIL 153 (720)
Q Consensus 83 l~~~~~~----~~--~~~l~~L~~L~l~~~~~l~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l--~~L~~L 153 (720)
+++|.+. .. +.++++|++|++++|. ++.. .|. .+..+++|++|++++|. +....+..+. .+ .+|+.|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKI-QPASFFLNMRRFHVLDLTFNK-VKSICEEDLL-NFQGKHFTLL 185 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSC-CCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG-GGTTCEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCc-cCcc-CcccccCCCCcccEEeCCCCc-ccccChhhhh-cccccccccc
Confidence 8877764 11 5667778888887775 4421 132 36777778888877776 4443333332 22 567777
Q ss_pred eccCCC--CCccc---------cccCCcCcEEeccCCCCCchhhHHHhhcc---ccccEEeccCCc
Q 005004 154 NSSYCP--NISLE---------SVRLPMLTVLQLHSCEGITSASMAAISHS---YMLEVLELDNCN 205 (720)
Q Consensus 154 ~l~~~~--~~~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~ 205 (720)
+++++. .++.. +..+++|++|++++ +.+++..+..+... .+|+.|+++++.
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCC-CcccccchhhhhccccccceeeEeecccc
Confidence 777665 22211 22345566666666 35555555544433 555555555543
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=6.6e-28 Score=257.63 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=91.5
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee-ccCCCccEE
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-IRCPQLEHL 81 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~L~~L 81 (720)
+++++++|++|++++|.+++. | .|..+++|++|++++|.+.+ +| ++.+++|++|++++|++..++ +.+++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEE
Confidence 456677788888888777764 3 67777888888888877754 33 667777777777777776543 235555555
Q ss_pred eccCcchH-HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCCC
Q 005004 82 SLKRSNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN 160 (720)
Q Consensus 82 ~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 160 (720)
++++|.+. -.+.++++|++|++++|. ++. ++ ++.+++|++|++++|..+...
T Consensus 112 ~L~~N~l~~l~~~~l~~L~~L~l~~N~-l~~--l~--l~~l~~L~~L~l~~n~~~~~~---------------------- 164 (457)
T 3bz5_A 112 NCDTNKLTKLDVSQNPLLTYLNCARNT-LTE--ID--VSHNTQLTELDCHLNKKITKL---------------------- 164 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTSC-CSC--CC--CTTCTTCCEEECTTCSCCCCC----------------------
T ss_pred ECCCCcCCeecCCCCCcCCEEECCCCc-cce--ec--cccCCcCCEEECCCCCccccc----------------------
Confidence 55555443 113444445555554442 331 11 344444444444444322211
Q ss_pred CccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 161 ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 161 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
.++.+++|+.|++++ +.++... +..+++|++|++++|.
T Consensus 165 ---~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp ---CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECCSSC
T ss_pred ---ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECcCCc
Confidence 244455555555555 2444422 4455566666665553
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.8e-28 Score=257.85 Aligned_cols=406 Identities=17% Similarity=0.115 Sum_probs=200.4
Q ss_pred cccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCC-------------cEEEcccccceee
Q 005004 5 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL-------------RRLEITKCRVMRV 71 (720)
Q Consensus 5 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~ 71 (720)
.+.++|+.|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+..+
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 3568999999999999 7899999999999999999999988999988888765 8999999998888
Q ss_pred eccCCCccEEeccCcchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccc
Q 005004 72 SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 151 (720)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 151 (720)
+.-.++|++|++++|.+.......++|++|++++|. ++ .++. ..++|++|++++|. +.. .+ .+. .+++|+
T Consensus 87 p~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~-l~--~l~~---~~~~L~~L~L~~n~-l~~-lp-~~~-~l~~L~ 156 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTELPELPQSLKSLLVDNNN-LK--ALSD---LPPLLEYLGVSNNQ-LEK-LP-ELQ-NSSFLK 156 (454)
T ss_dssp CSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSC-CS--CCCS---CCTTCCEEECCSSC-CSS-CC-CCT-TCTTCC
T ss_pred CCCcCCCCEEEccCCcCCccccccCCCcEEECCCCc-cC--cccC---CCCCCCEEECcCCC-CCC-Cc-ccC-CCCCCC
Confidence 766788999999988876433345788899998874 55 2221 12688888888886 553 33 344 788888
Q ss_pred eeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccc
Q 005004 152 ILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFA 229 (720)
Q Consensus 152 ~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~ 229 (720)
+|++++|. .+|.. .++|++|+++++ .++.. + .+..+++|++|++++|.+.+ +|...+
T Consensus 157 ~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~~-------------- 215 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLPL-------------- 215 (454)
T ss_dssp EEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCCT--------------
T ss_pred EEECCCCcCcccCCC---cccccEEECcCC-cCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCcC--------------
Confidence 88888886 44433 247888888884 66653 2 57778888888888876543 332222
Q ss_pred cchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCcc
Q 005004 230 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 309 (720)
Q Consensus 230 ~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 309 (720)
+|+++++++|.++.. +.+. .+++|++|++++ |.+++.. ...++|+
T Consensus 216 ------------------~L~~L~l~~n~l~~l--p~~~-------~l~~L~~L~l~~-N~l~~l~-------~~~~~L~ 260 (454)
T 1jl5_A 216 ------------------SLESIVAGNNILEEL--PELQ-------NLPFLTTIYADN-NLLKTLP-------DLPPSLE 260 (454)
T ss_dssp ------------------TCCEEECCSSCCSSC--CCCT-------TCTTCCEEECCS-SCCSSCC-------SCCTTCC
T ss_pred ------------------cccEEECcCCcCCcc--cccC-------CCCCCCEEECCC-CcCCccc-------ccccccC
Confidence 344444444444321 1111 234555555555 3443311 1124555
Q ss_pred EEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCccccccc
Q 005004 310 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 389 (720)
Q Consensus 310 ~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~ 389 (720)
+|++++|. +..++. ..++|+.+++++|. +.....+| ++|+.+++++
T Consensus 261 ~L~l~~N~-l~~l~~---------------------~~~~L~~L~ls~N~-l~~l~~~~-----------~~L~~L~l~~ 306 (454)
T 1jl5_A 261 ALNVRDNY-LTDLPE---------------------LPQSLTFLDVSENI-FSGLSELP-----------PNLYYLNASS 306 (454)
T ss_dssp EEECCSSC-CSCCCC---------------------CCTTCCEEECCSSC-CSEESCCC-----------TTCCEEECCS
T ss_pred EEECCCCc-ccccCc---------------------ccCcCCEEECcCCc-cCcccCcC-----------CcCCEEECcC
Confidence 55555543 222111 11334444444432 11111111 3444555555
Q ss_pred ceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeec
Q 005004 390 LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDL 469 (720)
Q Consensus 390 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 469 (720)
|.++ .++. ..++|+.|++++| .+.. ++. .+++|++|++++|.+.... . .+++|++|++
T Consensus 307 N~l~--------~i~~---~~~~L~~L~Ls~N-~l~~--lp~---~~~~L~~L~L~~N~l~~lp--~---~l~~L~~L~L 364 (454)
T 1jl5_A 307 NEIR--------SLCD---LPPSLEELNVSNN-KLIE--LPA---LPPRLERLIASFNHLAEVP--E---LPQNLKQLHV 364 (454)
T ss_dssp SCCS--------EECC---CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSCCC--C---CCTTCCEEEC
T ss_pred CcCC--------cccC---CcCcCCEEECCCC-cccc--ccc---cCCcCCEEECCCCcccccc--c---hhhhccEEEC
Confidence 5542 1111 1247788888877 4443 333 3577888888888766432 1 4678888888
Q ss_pred CCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 470 SYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 470 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
++|.+.++|..- ..+..|.. |. ..+..+ ..+++|+.|++++|.+++ ++.. .++++.|.+.+|.
T Consensus 365 ~~N~l~~l~~ip---~~l~~L~~--n~-~~~~i~------~~~~~L~~L~ls~N~l~~--~~~i---P~sl~~L~~~~~~ 427 (454)
T 1jl5_A 365 EYNPLREFPDIP---ESVEDLRM--NS-HLAEVP------ELPQNLKQLHVETNPLRE--FPDI---PESVEDLRMNSER 427 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEEC--CC-----------------------------------------------------
T ss_pred CCCCCCcCCCCh---HHHHhhhh--cc-cccccc------cccCcCCEEECCCCcCCc--cccc---hhhHhheeCcCcc
Confidence 888887643211 12233322 22 221111 125678888888888764 1221 2456777777765
Q ss_pred C
Q 005004 550 N 550 (720)
Q Consensus 550 ~ 550 (720)
.
T Consensus 428 ~ 428 (454)
T 1jl5_A 428 V 428 (454)
T ss_dssp -
T ss_pred c
Confidence 3
No 30
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=7.7e-27 Score=252.28 Aligned_cols=410 Identities=17% Similarity=0.207 Sum_probs=220.8
Q ss_pred cCcCCeeecCCCCCchhhHHh-hhcCCCCcEEEeCCCccCC----cccccccccCCCcEEEcccccceeeeccCCCccEE
Q 005004 7 LRNLEALTLGRGQLGDAFFHA-LADCSMLKSLNVNDATLGN----GVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHL 81 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L 81 (720)
.++++.||+++++++...... +..+++|++|++++|.+.. .++..+..+++|++|++++|++....
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--------- 72 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG--------- 72 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH---------
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH---------
Confidence 367899999999998876655 7889999999999998863 35566666677777777776654311
Q ss_pred eccCcchHHHHhcCC----CceEEeeccccCcchh---hHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHh----cCcc
Q 005004 82 SLKRSNMAQAVLNCP----LLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALS----CANL 150 (720)
Q Consensus 82 ~l~~~~~~~~~~~l~----~L~~L~l~~~~~l~~~---~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~----l~~L 150 (720)
.......++ +|++|++++|. +++. .++..+..+++|++|++++|. +.+..+..+... .++|
T Consensus 73 ------~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 73 ------VHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp ------HHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCC
T ss_pred ------HHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcc
Confidence 112233444 58888888774 5542 456777888888888888887 666666666543 2346
Q ss_pred ceeeccCCCC-------CccccccCCcCcEEeccCCCCCchhhHHHhhc-----cccccEEeccCCcccccccccccccc
Q 005004 151 RILNSSYCPN-------ISLESVRLPMLTVLQLHSCEGITSASMAAISH-----SYMLEVLELDNCNLLTSVSLELPRLQ 218 (720)
Q Consensus 151 ~~L~l~~~~~-------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~~~L~ 218 (720)
++|++++|.- ++..+..+++|++|+++++ .+.+..+..+.. .++|++|++++|
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-------------- 209 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-------------- 209 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS--------------
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC--------------
Confidence 6666666530 1222233344444444442 344333333322 234444444444
Q ss_pred ceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhh
Q 005004 219 NIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV 298 (720)
Q Consensus 219 ~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~ 298 (720)
.++.. +...+......+++|++|++++ +.+++.....
T Consensus 210 ---------------------------------------~l~~~---~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~ 246 (461)
T 1z7x_W 210 ---------------------------------------GVTSD---NCRDLCGIVASKASLRELALGS-NKLGDVGMAE 246 (461)
T ss_dssp ---------------------------------------CCBTT---HHHHHHHHHHHCTTCCEEECCS-SBCHHHHHHH
T ss_pred ---------------------------------------CCcHH---HHHHHHHHHHhCCCccEEeccC-CcCChHHHHH
Confidence 33321 1111222222345555555555 2444332211
Q ss_pred hcC--CCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceecc
Q 005004 299 FSD--GGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 376 (720)
Q Consensus 299 ~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~ 376 (720)
+.. ...+++|++|++++|. ++.... ..+... +
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~-l~~~~~-------------~~l~~~--------------------------------l 280 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECG-ITAKGC-------------GDLCRV--------------------------------L 280 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CCHHHH-------------HHHHHH--------------------------------H
T ss_pred HHHHHhcCCCCceEEECcCCC-CCHHHH-------------HHHHHH--------------------------------H
Confidence 110 0234555555555553 221000 000000 1
Q ss_pred CCCCCCcccccccceeeeeeecCcccccccc-cCCCCccEEeccCCCCCcchh---hhhhhccCCCccEEeecCCCCCCc
Q 005004 377 GICPKLSTLGIEALHMVVLELKGCGVLSDAY-INCPLLTSLDASFCSQLKDDC---LSATTTSCPLIESLILMSCQSIGP 452 (720)
Q Consensus 377 ~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~ 452 (720)
..+++|+.+++++|.++.. +...+...+ ...++|+.|++++| .+++.. ++..+..+++|++|++++|.+...
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~---~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDE---GARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHCTTCCEEECTTCCCHHH---HHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred hhCCCcceEECCCCCCchH---HHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 1122222222222222100 000111111 12356777777777 454432 445566778888888888765432
Q ss_pred hhhHHhhc-----CCCCCeeecCCcccC-----ChhHHHhccccccEEEcCCCCCCChhHHHHHHh-c-CCCCCcceeec
Q 005004 453 DGLYSLRS-----LQNLTMLDLSYTFLT-----NLEPVFESCLQLKVLKLQACKYLTNTSLESLYK-K-GSLPALQELDL 520 (720)
Q Consensus 453 ~~~~~~~~-----~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~-~~~~~L~~L~l 520 (720)
++..+.. .++|++|++++|.++ .++..+..+++|++|++++|+ +++.....+.. + ....+|+.|++
T Consensus 357 -~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~ 434 (461)
T 1z7x_W 357 -GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVL 434 (461)
T ss_dssp -HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred -cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheee
Confidence 2333332 568888888888887 466677888888999988887 87776555532 2 22446777777
Q ss_pred CCCccch---HHHHHHHhhCCCCcEE
Q 005004 521 SYGTLCQ---SAIEELLAYCTHLTHV 543 (720)
Q Consensus 521 ~~~~i~~---~~~~~~l~~~~~L~~L 543 (720)
.++.... ..+.......|+++.+
T Consensus 435 ~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 435 YDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp TTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred cccccCHHHHHHHHHHhccCCCcEee
Confidence 7765553 2233334456776654
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.2e-27 Score=255.95 Aligned_cols=383 Identities=16% Similarity=0.160 Sum_probs=193.9
Q ss_pred cEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCcchH-----HHHhcCCCceEEeecc
Q 005004 35 KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIAS 105 (720)
Q Consensus 35 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~ 105 (720)
+.++.+++.+ ..+|.. .++|++|++++|.+..++ .++++|++|++++|.+. ..+.++++|++|++++
T Consensus 13 ~~~~c~~~~l-~~lp~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGL-HQVPEL---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCC-SSCCCC---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCc-ccCCCC---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4677777776 456662 378999999999988763 35777888888777653 4567777777777777
Q ss_pred ccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHH-HHHhcCccceeeccCCCCCccccccCCcCcEEeccCCCCCch
Q 005004 106 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE-IALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITS 184 (720)
Q Consensus 106 ~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 184 (720)
|. ++. ..|..++++++|++|++++|. +.+..+.. ....+++|++|++++|. ++.
T Consensus 89 n~-l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~----------------------l~~ 143 (455)
T 3v47_A 89 NQ-FLQ-LETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN----------------------IKK 143 (455)
T ss_dssp CT-TCE-ECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB----------------------CCS
T ss_pred Cc-cCc-cChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc----------------------cCc
Confidence 74 441 235566777777777777776 54433332 12255666666666554 222
Q ss_pred hhHHH-hhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccc
Q 005004 185 ASMAA-ISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS 263 (720)
Q Consensus 185 ~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~ 263 (720)
..+.. +..+++|++|++++|.+.+..+..+..+. ...++.+++++|.+.+..
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---------------------------~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---------------------------GKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT---------------------------TCEEEEEECTTCBCTTCS
T ss_pred cCcccccCCCCcccEEeCCCCcccccChhhhhccc---------------------------cccccccccccCcccccc
Confidence 22222 33444444444444443332222211110 023344444444443321
Q ss_pred cccchh-hHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceeccccCCceeEeecCCCcccc
Q 005004 264 LQKQEN-LTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITA 342 (720)
Q Consensus 264 ~~~~~~-l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~ 342 (720)
...... .......+++|++|++++ +.+++..+..+......++|+.|++++|....... ..
T Consensus 197 ~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~---------------- 258 (455)
T 3v47_A 197 EYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GH---------------- 258 (455)
T ss_dssp TTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TC----------------
T ss_pred hhhccccccccccccceeeeEecCC-CcccccchhhhhccccccceeeEeecccccccccc-ch----------------
Confidence 111000 000001236778888877 57777666666444455778888887775322100 00
Q ss_pred ccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCC
Q 005004 343 LELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCS 422 (720)
Q Consensus 343 l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 422 (720)
..+... . +..+ .-..+++|+.+++++|.++ +..+..+..+++|+.|++++|
T Consensus 259 -----~~~~~~-----~--------~~~~---~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n- 309 (455)
T 3v47_A 259 -----TNFKDP-----D--------NFTF---KGLEASGVKTCDLSKSKIF-------ALLKSVFSHFTDLEQLTLAQN- 309 (455)
T ss_dssp -----CSSCCC-----C--------TTTT---GGGTTSCCCEEECCSSCCC-------EECTTTTTTCTTCCEEECTTS-
T ss_pred -----hhhccC-----c--------cccc---ccccccCceEEEecCcccc-------ccchhhcccCCCCCEEECCCC-
Confidence 000000 0 0000 0011234445555555442 333445555666666666665
Q ss_pred CCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCCh-hHHHhccccccEEEcCCCCCCChh
Q 005004 423 QLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNT 501 (720)
Q Consensus 423 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~ 501 (720)
.+.. ..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.++ |..+..+++|+.|++++|+ +++.
T Consensus 310 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 386 (455)
T 3v47_A 310 EINK-IDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSV 386 (455)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCC
T ss_pred cccc-cChhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccC
Confidence 3332 12333455555666666655543322 34455555566666655555544 3355555555555555544 4443
Q ss_pred HHHHHHhcCCCCCcceeecCCCccc
Q 005004 502 SLESLYKKGSLPALQELDLSYGTLC 526 (720)
Q Consensus 502 ~~~~l~~~~~~~~L~~L~l~~~~i~ 526 (720)
....+ ..+++|+.|++++|+++
T Consensus 387 ~~~~~---~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 387 PDGIF---DRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTTT---TTCTTCCEEECCSSCBC
T ss_pred CHhHh---ccCCcccEEEccCCCcc
Confidence 22222 44555555555555543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5.7e-26 Score=244.99 Aligned_cols=342 Identities=17% Similarity=0.211 Sum_probs=185.7
Q ss_pred ccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEEec
Q 005004 6 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSL 83 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l 83 (720)
.+++++.|+++++.++.. + .+..+++|++|++++|.+.+ +++ +.++++|++|++++|.+..++ ..+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 356777888887777642 2 46777888888888877743 344 677777777777777776554 24455555555
Q ss_pred cCcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCCCC
Q 005004 84 KRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 161 (720)
Q Consensus 84 ~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 161 (720)
++|.+. ..+.++++|++|++++|. ++. ++ .+..++ +|+.|+++++..-
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~--~~-~~~~l~--------------------------~L~~L~l~~~~~~ 169 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNT-ISD--IS-ALSGLT--------------------------SLQQLSFGNQVTD 169 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEE-ECC--CG-GGTTCT--------------------------TCSEEEEEESCCC
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCc-cCC--Ch-hhccCC--------------------------cccEeecCCcccC
Confidence 555443 224444555555555443 331 11 234444 4444444432211
Q ss_pred ccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhccccee
Q 005004 162 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 241 (720)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l 241 (720)
...+.++++|+.|+++++ .++.. ..+..+++|++|++++|...+..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~------------------------------ 216 (466)
T 1o6v_A 170 LKPLANLTTLERLDISSN-KVSDI--SVLAKLTNLESLIATNNQISDITP------------------------------ 216 (466)
T ss_dssp CGGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG------------------------------
T ss_pred chhhccCCCCCEEECcCC-cCCCC--hhhccCCCCCEEEecCCccccccc------------------------------
Confidence 122445556666666553 34432 235666777777777664432211
Q ss_pred eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCce
Q 005004 242 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 321 (720)
Q Consensus 242 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 321 (720)
+..+++|+++++++|.+++.. .+ ..+++|+.|++++ +.+++..+ + ..+++|++|++++|. +..
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~-----~l----~~l~~L~~L~l~~-n~l~~~~~--~---~~l~~L~~L~l~~n~-l~~ 279 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIG-----TL----ASLTNLTDLDLAN-NQISNLAP--L---SGLTKLTELKLGANQ-ISN 279 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG-----GG----GGCTTCSEEECCS-SCCCCCGG--G---TTCTTCSEEECCSSC-CCC
T ss_pred -ccccCCCCEEECCCCCcccch-----hh----hcCCCCCEEECCC-Cccccchh--h---hcCCCCCEEECCCCc-cCc
Confidence 223455666666666655431 11 1347788888887 46665443 2 567777777777764 111
Q ss_pred eccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcc
Q 005004 322 VRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCG 401 (720)
Q Consensus 322 ~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~ 401 (720)
++
T Consensus 280 ~~------------------------------------------------------------------------------ 281 (466)
T 1o6v_A 280 IS------------------------------------------------------------------------------ 281 (466)
T ss_dssp CG------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred cccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHH
Q 005004 402 VLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF 481 (720)
Q Consensus 402 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~ 481 (720)
. +..+++|+.|++++| .+.+ ++. +..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.++ +.+
T Consensus 282 ---~-~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~-~~l 349 (466)
T 1o6v_A 282 ---P-LAGLTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDV-SSL 349 (466)
T ss_dssp ---G-GTTCTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCC-GGG
T ss_pred ---c-ccCCCccCeEEcCCC-cccC--chh-hcCCCCCCEEECcCCcCCCch---hhccCccCCEeECCCCccCCc-hhh
Confidence 0 122344444455444 2222 111 345555555555555544432 145566666666666666655 245
Q ss_pred hccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch
Q 005004 482 ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 482 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~ 527 (720)
..+++|+.|++++|+ +++..+ + ..+++|+.|++++|.++.
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~--~---~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQ-ISDLTP--L---ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCSSC-CCBCGG--G---TTCTTCCEEECCCEEEEC
T ss_pred ccCCCCCEEeCCCCc-cCccch--h---hcCCCCCEEeccCCcccC
Confidence 566666666666665 554433 2 566666777777666654
No 33
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.8e-26 Score=257.75 Aligned_cols=124 Identities=15% Similarity=0.268 Sum_probs=56.6
Q ss_pred cCCCCcEEEeCCCccCCcccccccc-cCC-CcEEEccccccee------eeccCCCccEEeccCcch--------HHHHh
Q 005004 30 DCSMLKSLNVNDATLGNGVQEIPIN-HDQ-LRRLEITKCRVMR------VSIRCPQLEHLSLKRSNM--------AQAVL 93 (720)
Q Consensus 30 ~~~~L~~L~l~~~~l~~~~~~~~~~-l~~-L~~L~l~~~~~~~------~~~~~~~L~~L~l~~~~~--------~~~~~ 93 (720)
.+++|++|+|++|.+.+..+..+.. +++ |++|++++|.... +..++++|++|++++|.+ .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5556666666655554333333333 222 5666665554211 112455555555555542 23344
Q ss_pred cCCCceEEeeccccCcc---hhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccC
Q 005004 94 NCPLLHLLDIASCHKLS---DAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 157 (720)
Q Consensus 94 ~l~~L~~L~l~~~~~l~---~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 157 (720)
.+++|++|++++|. ++ ...++..+.++++|++|++++|. +.+ .+ .....+++|++|++++
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-l~-~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILE-LV-GFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG-GH-HHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHH-HH-HHHhhhhHHHhhcccc
Confidence 55555555555443 22 23444444555555555555544 221 22 2222455555555543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-25 Score=242.15 Aligned_cols=127 Identities=22% Similarity=0.253 Sum_probs=106.7
Q ss_pred ccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhcccc
Q 005004 407 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 486 (720)
Q Consensus 407 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 486 (720)
+..+++|+.|++++| .+.. ++. +..+++|+.|++++|.+.... .+..+++|+.|++++|.+.++++ +..+++
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 332 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISN--ISP-LAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISP-VSSLTK 332 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCC--CGG-GTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSCCSCCGG-GGGCTT
T ss_pred hhcCCCCCEEECCCC-ccCc--ccc-ccCCCccCeEEcCCCcccCch---hhcCCCCCCEEECcCCcCCCchh-hccCcc
Confidence 567889999999998 4554 333 778999999999999887643 37899999999999999998766 789999
Q ss_pred ccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccC
Q 005004 487 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 487 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~ 550 (720)
|+.|++++|+ +++. .. +..+++|+.|++++|++++ ..+ +..+++|+.|++++|+.
T Consensus 333 L~~L~l~~n~-l~~~--~~---l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 333 LQRLFFYNNK-VSDV--SS---LANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCEEECCSSC-CCCC--GG---GTTCTTCCEEECCSSCCCB-CGG--GTTCTTCCEEECCCEEE
T ss_pred CCEeECCCCc-cCCc--hh---hccCCCCCEEeCCCCccCc-cch--hhcCCCCCEEeccCCcc
Confidence 9999999987 7765 23 3789999999999999987 344 78899999999999963
No 35
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6.9e-26 Score=253.22 Aligned_cols=432 Identities=18% Similarity=0.247 Sum_probs=254.7
Q ss_pred HHhhhcCCCCcEEEeCCCccCCcc---------------cccccccCCCcEEEcccccceee-----eccCCCccEEecc
Q 005004 25 FHALADCSMLKSLNVNDATLGNGV---------------QEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLK 84 (720)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~l~~~~---------------~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~L~~L~l~ 84 (720)
...+..+++|++|+++++.....+ +.....+++|++|++++|.+... ...+++|++|+++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 345666777777777766421111 11223466777777777765432 2257777777777
Q ss_pred Cc-chH-----HHHhcCCCceEEeeccccCcchhh---HHHHhhcCCCCCEEEecCCC-CCchhhHHHHHHhcCccceee
Q 005004 85 RS-NMA-----QAVLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCS-CVSDESLREIALSCANLRILN 154 (720)
Q Consensus 85 ~~-~~~-----~~~~~l~~L~~L~l~~~~~l~~~~---l~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~ 154 (720)
++ .+. ....++++|++|++++|. +++.. ++.....+++|++|++++|. .+....+..+...+++|+.|+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence 66 222 444578888888888775 44322 33444567788888888775 355566666666778888888
Q ss_pred ccCCC---CCccccccCCcCcEEeccCCCC-Cch----hhHHHhhccccccEE-eccCCccccccccccccccceecccc
Q 005004 155 SSYCP---NISLESVRLPMLTVLQLHSCEG-ITS----ASMAAISHSYMLEVL-ELDNCNLLTSVSLELPRLQNIRLVHC 225 (720)
Q Consensus 155 l~~~~---~~~~~~~~~~~L~~L~l~~~~~-l~~----~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~L~~l~~~~~ 225 (720)
+++|. .++..+.++++|++|++..+.. +.. ..+..+..+++|+.+ .+.+... ..++.
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~------------- 283 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPA------------- 283 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGG-------------
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHH-------------
Confidence 88774 4455566778888888765422 111 233466778888888 3322110 00110
Q ss_pred cccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCC
Q 005004 226 RKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGC 305 (720)
Q Consensus 226 ~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 305 (720)
.+..+++|++|++++|.+++. .+..+...+++|+.|++++| +++.....+. ..+
T Consensus 284 ----------------~~~~~~~L~~L~L~~~~l~~~------~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~--~~~ 337 (594)
T 2p1m_B 284 ----------------VYSVCSRLTTLNLSYATVQSY------DLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA--STC 337 (594)
T ss_dssp ----------------GHHHHTTCCEEECTTCCCCHH------HHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH--HHC
T ss_pred ----------------HHHhhCCCCEEEccCCCCCHH------HHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH--HhC
Confidence 123455677777776665432 23333345677777777774 3333222221 346
Q ss_pred CCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCccc
Q 005004 306 PMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL 385 (720)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l 385 (720)
++|++|++.+|..... .....+.. ..+..+...++ +|+.+
T Consensus 338 ~~L~~L~L~~~~~~g~--~~~~~l~~------~~l~~l~~~~~--------------------------------~L~~L 377 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVM--EPNVALTE------QGLVSVSMGCP--------------------------------KLESV 377 (594)
T ss_dssp TTCCEEEEECSCTTCS--SCSSCCCH------HHHHHHHHHCT--------------------------------TCCEE
T ss_pred CCCCEEEEecCccccc--ccCCCCCH------HHHHHHHHhch--------------------------------hHHHH
Confidence 7777777755420000 00000000 00011111233 33333
Q ss_pred ccccceeeeeeecCccc-ccccccCCCCccEEecc-----CCCCCc----chhhhhhhccCCCccEEeecCCCCCCchhh
Q 005004 386 GIEALHMVVLELKGCGV-LSDAYINCPLLTSLDAS-----FCSQLK----DDCLSATTTSCPLIESLILMSCQSIGPDGL 455 (720)
Q Consensus 386 ~l~~~~l~~l~~~~~~~-~~~~~~~~~~L~~L~l~-----~~~~l~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 455 (720)
.+..+.++ .. +......+++|+.|+++ +|..++ +..++..+..+++|+.|++++ ...+.++
T Consensus 378 ~~~~~~l~-------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~ 448 (594)
T 2p1m_B 378 LYFCRQMT-------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF 448 (594)
T ss_dssp EEEESCCC-------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH
T ss_pred HHhcCCcC-------HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH
Confidence 32222221 11 11112246778888888 455666 455666678889999999976 3444545
Q ss_pred HHhhc-CCCCCeeecCCcccCC--hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHH
Q 005004 456 YSLRS-LQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEE 532 (720)
Q Consensus 456 ~~~~~-~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~ 532 (720)
..+.. +++|+.|++++|.+++ +......+++|++|++++|+ +++.....+. ..+++|+.|++++|+++...+..
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANA--SKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTG--GGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHH--HhCCCCCEEeeeCCCCCHHHHHH
Confidence 66665 8999999999998874 33344779999999999998 6766555442 55889999999999987755655
Q ss_pred HHhhCCCCcEEeccCcc
Q 005004 533 LLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 533 ~l~~~~~L~~L~l~~~~ 549 (720)
....+|+++...+.++.
T Consensus 526 l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 526 LGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHCTTEEEEEECSSS
T ss_pred HHHhCCCCEEEEecCCC
Confidence 55778888877776554
No 36
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.3e-25 Score=240.69 Aligned_cols=392 Identities=21% Similarity=0.246 Sum_probs=224.3
Q ss_pred CccEEeccCcchH-----HHHhcCCCceEEeeccccCcchh---hHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC
Q 005004 77 QLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA 148 (720)
Q Consensus 77 ~L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~---~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~ 148 (720)
+|++|+++++.+. ..+..+++|++|++++|. +++. .++..+..+++|++|++++|. +.+..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 4555555555543 447788889999998885 6644 456777888899999999887 77777777776666
Q ss_pred ----ccceeeccCCC-------CCccccccCCcCcEEeccCCCCCchhhHHHhhc-----cccccEEeccCCcccccccc
Q 005004 149 ----NLRILNSSYCP-------NISLESVRLPMLTVLQLHSCEGITSASMAAISH-----SYMLEVLELDNCNLLTSVSL 212 (720)
Q Consensus 149 ----~L~~L~l~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~ 212 (720)
+|++|++++|. .++..+.++++|++|+++++ .+++..+..+.. .++|++|++++|.+....+.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 68888888775 12444566677777777773 566555554443 24577777766644332211
Q ss_pred ccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccc
Q 005004 213 ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 292 (720)
Q Consensus 213 ~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~ 292 (720)
.++. .+..+++|+++++++|.+++..+..+. ..+....++|++|++++| .++
T Consensus 161 ~l~~-------------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n-~l~ 212 (461)
T 1z7x_W 161 PLAS-------------------------VLRAKPDFKELTVSNNDINEAGVRVLC--QGLKDSPCQLEALKLESC-GVT 212 (461)
T ss_dssp HHHH-------------------------HHHHCTTCCEEECCSSBCHHHHHHHHH--HHHHHSCCCCCEEECTTS-CCB
T ss_pred HHHH-------------------------HHhhCCCCCEEECcCCCcchHHHHHHH--HHHhcCCCCceEEEccCC-CCc
Confidence 1110 234456677777777666543211111 011112356777777763 555
Q ss_pred hhhhhhhcC-CCCCCCccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCcccccccccccc
Q 005004 293 NSVCEVFSD-GGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVAL 371 (720)
Q Consensus 293 ~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L 371 (720)
+.....++. +..+++|++|++++|. +..... . .+++.+
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~----------------~------------------------~l~~~~ 251 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNK-LGDVGM----------------A------------------------ELCPGL 251 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHH----------------H------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCc-CChHHH----------------H------------------------HHHHHH
Confidence 532111110 1355666666666653 221100 0 000000
Q ss_pred ceeccCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhh----ccCCCccEEeecCC
Q 005004 372 QSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATT----TSCPLIESLILMSC 447 (720)
Q Consensus 372 ~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~l~~L~~L~l~~~ 447 (720)
+..+++|+.+++++|.++.. +...++..+..+++|+.|++++| .+.+....... ...++|++|++++|
T Consensus 252 ----~~~~~~L~~L~L~~n~l~~~---~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 252 ----LHPSSRLRTLWIWECGITAK---GCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp ----TSTTCCCCEEECTTSCCCHH---HHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ----hcCCCCceEEECcCCCCCHH---HHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 12345555555555554210 01225566667788888888887 45543322221 22358888888888
Q ss_pred CCCCch---hhHHhhcCCCCCeeecCCcccCChh-HHH----hc-cccccEEEcCCCCCCChhHHHHHH-hcCCCCCcce
Q 005004 448 QSIGPD---GLYSLRSLQNLTMLDLSYTFLTNLE-PVF----ES-CLQLKVLKLQACKYLTNTSLESLY-KKGSLPALQE 517 (720)
Q Consensus 448 ~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~l~-~~~----~~-~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~~~L~~ 517 (720)
.+.... .+..+..+++|++|++++|.+.+.. ..+ .. .++|+.|++++|. +++.+...++ .+..+++|++
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccE
Confidence 765532 1344566788888888888776532 222 22 5688888888876 7763333221 1255778888
Q ss_pred eecCCCccchHHHHHHHhhC----CCCcEEeccCcc
Q 005004 518 LDLSYGTLCQSAIEELLAYC----THLTHVSLNGCG 549 (720)
Q Consensus 518 L~l~~~~i~~~~~~~~l~~~----~~L~~L~l~~~~ 549 (720)
|++++|++++.........+ .+|+.|.+.++.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 88888888765444444333 357777777654
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=7.1e-26 Score=241.71 Aligned_cols=386 Identities=16% Similarity=0.130 Sum_probs=225.8
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCC-------------cEEEeCCCccCCcccccccccCCCcEEEcccccc
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSML-------------KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 68 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L-------------~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 68 (720)
++|+++++|++|++++|.+++..|..++.+++| ++|++++|.+. .+|.. .++|++|++++|.+
T Consensus 28 ~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~---~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 28 VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSL 103 (454)
T ss_dssp ------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCC
T ss_pred hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC---cCCCCEEEccCCcC
Confidence 468999999999999999999999999888765 99999999985 45553 47899999999999
Q ss_pred eeeeccCCCccEEeccCcchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC
Q 005004 69 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA 148 (720)
Q Consensus 69 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~ 148 (720)
..++..+++|++|++++|.+...-...++|++|++++|. ++ .+| .++++++|++|++++|. +.. .+ ....
T Consensus 104 ~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~-l~--~lp-~~~~l~~L~~L~l~~N~-l~~-lp----~~~~ 173 (454)
T 1jl5_A 104 TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-LE--KLP-ELQNSSFLKIIDVDNNS-LKK-LP----DLPP 173 (454)
T ss_dssp SSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-CS--SCC-CCTTCTTCCEEECCSSC-CSC-CC----CCCT
T ss_pred CccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCC-CC--CCc-ccCCCCCCCEEECCCCc-Ccc-cC----CCcc
Confidence 998878899999999999886322223699999999985 66 466 58999999999999997 543 11 1346
Q ss_pred ccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceeccccc
Q 005004 149 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 226 (720)
Q Consensus 149 ~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~ 226 (720)
+|++|++++|. .+| .++++++|++|+++++ .+++.. . ..++|++|++++|.+. .+|.
T Consensus 174 ~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~-~---~~~~L~~L~l~~n~l~-~lp~-------------- 232 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLP-D---LPLSLESIVAGNNILE-ELPE-------------- 232 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCC-C---CCTTCCEEECCSSCCS-SCCC--------------
T ss_pred cccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCC-C---CcCcccEEECcCCcCC-cccc--------------
Confidence 99999999998 555 6889999999999994 666421 1 1368999999998654 3331
Q ss_pred ccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCC
Q 005004 227 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 306 (720)
Q Consensus 227 ~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 306 (720)
+..+++|+.+++++|.+++.. . ..++|++|++++ +.+++.. ...+
T Consensus 233 ----------------~~~l~~L~~L~l~~N~l~~l~-~----------~~~~L~~L~l~~-N~l~~l~-------~~~~ 277 (454)
T 1jl5_A 233 ----------------LQNLPFLTTIYADNNLLKTLP-D----------LPPSLEALNVRD-NYLTDLP-------ELPQ 277 (454)
T ss_dssp ----------------CTTCTTCCEEECCSSCCSSCC-S----------CCTTCCEEECCS-SCCSCCC-------CCCT
T ss_pred ----------------cCCCCCCCEEECCCCcCCccc-c----------cccccCEEECCC-CcccccC-------cccC
Confidence 334556666777766665421 0 125777777777 4565421 1236
Q ss_pred CccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccc
Q 005004 307 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 386 (720)
Q Consensus 307 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~ 386 (720)
+|++|++++|. +..++.. .++|+.+++++|.- .....+| ++|+.++
T Consensus 278 ~L~~L~ls~N~-l~~l~~~---------------------~~~L~~L~l~~N~l-~~i~~~~-----------~~L~~L~ 323 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGLSEL---------------------PPNLYYLNASSNEI-RSLCDLP-----------PSLEELN 323 (454)
T ss_dssp TCCEEECCSSC-CSEESCC---------------------CTTCCEEECCSSCC-SEECCCC-----------TTCCEEE
T ss_pred cCCEEECcCCc-cCcccCc---------------------CCcCCEEECcCCcC-CcccCCc-----------CcCCEEE
Confidence 67777777764 3332211 13455555555421 1111111 3556666
Q ss_pred cccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCch-hhHHhhcCCCCC
Q 005004 387 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD-GLYSLRSLQNLT 465 (720)
Q Consensus 387 l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~ 465 (720)
+++|.+ ..+|.. +++|+.|++++| .++. ++. .+++|++|++++|.+.+.. .+. .+.
T Consensus 324 Ls~N~l--------~~lp~~---~~~L~~L~L~~N-~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~------~l~ 380 (454)
T 1jl5_A 324 VSNNKL--------IELPAL---PPRLERLIASFN-HLAE--VPE---LPQNLKQLHVEYNPLREFPDIPE------SVE 380 (454)
T ss_dssp CCSSCC--------SCCCCC---CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSSCCCCCT------TCC
T ss_pred CCCCcc--------cccccc---CCcCCEEECCCC-cccc--ccc---hhhhccEEECCCCCCCcCCCChH------HHH
Confidence 666665 234432 467888888877 4443 444 4677888888887766521 122 222
Q ss_pred eeecCCcccC-ChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch
Q 005004 466 MLDLSYTFLT-NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 466 ~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~ 527 (720)
.|. .|.+. .+|. .+++|+.|++++|+ +++. +.+ .++++.|.+++|.+.+
T Consensus 381 ~L~--~n~~~~~i~~---~~~~L~~L~ls~N~-l~~~--~~i-----P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 381 DLR--MNSHLAEVPE---LPQNLKQLHVETNP-LREF--PDI-----PESVEDLRMNSERVVD 430 (454)
T ss_dssp EEE--CCC-------------------------------------------------------
T ss_pred hhh--hccccccccc---ccCcCCEEECCCCc-CCcc--ccc-----hhhHhheeCcCcccCC
Confidence 222 23332 2333 24677777777766 5432 111 2346666677666554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6.2e-24 Score=220.10 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=29.8
Q ss_pred hcCccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 146 SCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 146 ~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
.+++|+.|++++|. .....+..+++|++|+++++ .+....+ +..+++|++|++++|.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCc
Confidence 34444444444442 22223445566666666653 4443332 5667777777777764
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.2e-25 Score=235.92 Aligned_cols=212 Identities=18% Similarity=0.152 Sum_probs=123.4
Q ss_pred chhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcchHHHHhcCCCceE
Q 005004 21 GDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHL 100 (720)
Q Consensus 21 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~ 100 (720)
....+..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+..++ +..+++|++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~-------------------~~~l~~L~~ 89 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD-------------------LSQNTNLTY 89 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC-------------------CTTCTTCSE
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc-------------------cccCCCCCE
Confidence 33445567788999999999998864 45 4778888888888888877553 234445555
Q ss_pred EeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccccCCcCcEEeccC
Q 005004 101 LDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHS 178 (720)
Q Consensus 101 L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~ 178 (720)
|++++|. ++. ++ ++.+++|++|++++|. +... + +. .+++|++|++++|. .+ .++.+++|++|++++
T Consensus 90 L~Ls~N~-l~~--~~--~~~l~~L~~L~L~~N~-l~~l-~--~~-~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 90 LACDSNK-LTN--LD--VTPLTKLTYLNCDTNK-LTKL-D--VS-QNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHL 157 (457)
T ss_dssp EECCSSC-CSC--CC--CTTCTTCCEEECCSSC-CSCC-C--CT-TCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTT
T ss_pred EECcCCC-Cce--ee--cCCCCcCCEEECCCCc-CCee-c--CC-CCCcCCEEECCCCcccee--ccccCCcCCEEECCC
Confidence 5555543 331 21 4555556666665554 3321 1 22 45555555555554 22 244556666666666
Q ss_pred CCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccCCCcccEEEeccCc
Q 005004 179 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNS 258 (720)
Q Consensus 179 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~ 258 (720)
+..+... .+..+++|++|++++|.+.+ +.+..++.|+.+++++|.
T Consensus 158 n~~~~~~---~~~~l~~L~~L~ls~n~l~~--------------------------------l~l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 158 NKKITKL---DVTPQTQLTTLDCSFNKITE--------------------------------LDVSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CSCCCCC---CCTTCTTCCEEECCSSCCCC--------------------------------CCCTTCTTCCEEECCSSC
T ss_pred CCccccc---ccccCCcCCEEECCCCccce--------------------------------eccccCCCCCEEECcCCc
Confidence 4333332 35566777777777664332 123445566666666666
Q ss_pred ccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCC
Q 005004 259 LQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 317 (720)
Q Consensus 259 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (720)
+++.. +. .+++|++|++++ |.++++ + ...+++|++|++++|.
T Consensus 203 l~~~~---l~-------~l~~L~~L~Ls~-N~l~~i-p-----~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 203 ITKLD---LN-------QNIQLTFLDCSS-NKLTEI-D-----VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CSCCC---CT-------TCTTCSEEECCS-SCCSCC-C-----CTTCTTCSEEECCSSC
T ss_pred CCeec---cc-------cCCCCCEEECcC-Cccccc-C-----ccccCCCCEEEeeCCc
Confidence 65541 11 246677777776 466653 1 2566677777777664
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.6e-23 Score=217.06 Aligned_cols=126 Identities=23% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhcccccc
Q 005004 409 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 488 (720)
Q Consensus 409 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 488 (720)
.+++|+.|++++| .+++ ++. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+++ .+..+++|+
T Consensus 219 ~~~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~ 290 (347)
T 4fmz_A 219 NMTRLNSLKIGNN-KITD--LSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLN 290 (347)
T ss_dssp GCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred cCCcCCEEEccCC-ccCC--Ccc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCC
Confidence 3444555555554 2222 111 44455555555555544332 23445555566666655555542 345556666
Q ss_pred EEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 489 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 489 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
.|++++|+ +++..+..+ ..+++|+.|++++|++++ ..+ +..+++|++|++++|+
T Consensus 291 ~L~L~~n~-l~~~~~~~l---~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 291 SLFLNNNQ-LGNEDMEVI---GGLTNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSC-CCGGGHHHH---HTCTTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC-
T ss_pred EEECcCCc-CCCcChhHh---hccccCCEEEccCCcccc-ccC--hhhhhccceeehhhhc
Confidence 66666654 555444444 445566666666665554 222 4556666666666654
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1e-23 Score=221.97 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=78.2
Q ss_pred ccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhcccc
Q 005004 407 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 486 (720)
Q Consensus 407 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 486 (720)
+..+++|+.|++++| .+... .+..+..+++|++|++++|.+... +..+..+++|++|++++|.+..+|..+..+++
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEKI-MYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCEE-ESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred HcCCCCccEEECCCC-cCCCc-ChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCc
Confidence 344556666666665 33321 234455666666666666665443 22345677888888888888887777778888
Q ss_pred ccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCC
Q 005004 487 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 538 (720)
Q Consensus 487 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~ 538 (720)
|+.|++++|+ ++... +..+++|+.|++++|++........+..++
T Consensus 320 L~~L~L~~N~-i~~~~------~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 320 LENLYLDHNS-IVTLK------LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp CSEEECCSSC-CCCCC------CCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred CCEEECCCCc-cceeC------chhhccCCEEEcCCCCccchhHHHHHHHHH
Confidence 8888888877 65542 266788888888888887644444444433
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.9e-24 Score=231.04 Aligned_cols=286 Identities=19% Similarity=0.222 Sum_probs=217.8
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
++++.|++++|.+++..+++|.++++|++|+|++|.+.+..|..+.++++|++|++++|++..++ .++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57999999999999988999999999999999999997777888999999999999999998776 35899999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
++|.+. ..+.++++|++|++++|. ++. ..+..+..+++|++|++++|. +.......+. .+++|+.|++++|.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDND-LVY-ISHRAFSGLNSLEQLTLEKCN-LTSIPTEALS-HLHGLIVLRLRHLN 187 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTT-CCE-ECTTSSTTCTTCCEEEEESCC-CSSCCHHHHT-TCTTCCEEEEESCC
T ss_pred CCCccccCChhHccccccCCEEECCCCc-cce-eChhhccCCCCCCEEECCCCc-CcccChhHhc-ccCCCcEEeCCCCc
Confidence 999876 567889999999999985 552 235577889999999999997 6654444454 89999999999987
Q ss_pred --CC-ccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhc
Q 005004 160 --NI-SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 236 (720)
Q Consensus 160 --~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~ 236 (720)
.+ +..+..+++|+.|+++++..+. ..+.......+|++|++++|.+.. +|.. .+..+++|+.++++++
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-------~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTA-VPYL-------AVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCS-CCHH-------HHTTCTTCCEEECCSS
T ss_pred CcEeChhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccc-cCHH-------HhcCccccCeeECCCC
Confidence 33 3357788999999999864333 333344445689999999886553 2211 1223334444455555
Q ss_pred cccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEe
Q 005004 237 MLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 313 (720)
Q Consensus 237 ~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l 313 (720)
.+..+ .+..+++|+.+++++|.+++..+..+.. +++|+.|++++ |.+++..+..+ ..+++|++|++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~l 327 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG-------LNYLRVLNVSG-NQLTTLEESVF---HSVGNLETLIL 327 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT-------CTTCCEEECCS-SCCSCCCGGGB---SCGGGCCEEEC
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcC-------cccCCEEECCC-CcCceeCHhHc---CCCcccCEEEc
Confidence 55554 4677888888888888887765444333 47888888888 57877766666 67788888888
Q ss_pred ccCC
Q 005004 314 DNCE 317 (720)
Q Consensus 314 ~~~~ 317 (720)
++|.
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8876
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-23 Score=220.85 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=41.2
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceee
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV 71 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 71 (720)
++++++|+++++.++.+.+..|..+++|++|++++|.+....+..+..+++|++|++++|++..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence 46666677766666655555566667777777776666544444566666666666666666544
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-23 Score=230.76 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=57.2
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCc
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 86 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~ 86 (720)
+++++.|+++++.++.+.+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 115 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-------------- 115 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC--------------
Confidence 345556666666555555555556666666666666554444445555555555555555554433
Q ss_pred chHHHHhcCCCceEEeeccccCcchhhHHH-HhhcCCCCCEEEecCCC
Q 005004 87 NMAQAVLNCPLLHLLDIASCHKLSDAAIRL-AATSCPQLESLDMSNCS 133 (720)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~-~~~~l~~L~~L~l~~~~ 133 (720)
...+.++++|++|++++|. ++ .+|. .++.+++|++|++++|.
T Consensus 116 --~~~~~~l~~L~~L~L~~n~-l~--~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 116 --PHVFQNVPLLTVLVLERND-LS--SLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp --TTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCTTCCEEECCSSC
T ss_pred --HHHHcCCCCCCEEEeeCCC-CC--CCCHHHhccCCCCCEEEeeCCc
Confidence 0233455555555555553 33 2332 23555555666655554
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-22 Score=225.19 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=75.1
Q ss_pred ccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhcccc
Q 005004 407 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 486 (720)
Q Consensus 407 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 486 (720)
+..+++|+.|++++| .+... .+..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+..+|..+..+++
T Consensus 250 l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN-ELEKI-MYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp GGGCTTCSEEECCSS-CCCEE-ESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred hccCCCCCEEECCCC-ccCCC-CHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 344555666666665 33321 334455666666666666655442 22344577788888888888877777777888
Q ss_pred ccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHh
Q 005004 487 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 535 (720)
Q Consensus 487 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~ 535 (720)
|+.|++++|+ ++... +..+++|+.|++++|.+........+.
T Consensus 326 L~~L~L~~N~-l~~~~------~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 326 LENLYLDHNS-IVTLK------LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp CSEEECCSSC-CCCCC------CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCEEECCCCC-CCCcC------hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 8888888877 55442 266788888888888887644444433
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=222.53 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=111.7
Q ss_pred cCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhh
Q 005004 376 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 455 (720)
Q Consensus 376 ~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 455 (720)
+.++++|+.+++++|.+. +..+..+..+++|+.|++++|+.+.. ++.......+|+.|++++|.+.... .
T Consensus 172 l~~l~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~-~ 241 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCNLTAVP-Y 241 (477)
T ss_dssp HTTCTTCCEEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSCCCSCC-H
T ss_pred hcccCCCcEEeCCCCcCc-------EeChhhcccCcccceeeCCCCccccc--cCcccccCccccEEECcCCcccccC-H
Confidence 455666677777666653 22334566778888888888754433 3333334457888888888766542 4
Q ss_pred HHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHH
Q 005004 456 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 534 (720)
Q Consensus 456 ~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l 534 (720)
..+..+++|+.|++++|.+.+++. .+..+++|+.|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..+
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 316 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF---RGLNYLRVLNVSGNQLTT-LEESVF 316 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB---TTCTTCCEEECCSSCCSC-CCGGGB
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHh---cCcccCCEEECCCCcCce-eCHhHc
Confidence 567788888888888888887655 67788888888888876 766655544 677888888888888776 444556
Q ss_pred hhCCCCcEEeccCccCc
Q 005004 535 AYCTHLTHVSLNGCGNM 551 (720)
Q Consensus 535 ~~~~~L~~L~l~~~~~l 551 (720)
..+++|+.|++++|+-.
T Consensus 317 ~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 317 HSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCGGGCCEEECCSSCEE
T ss_pred CCCcccCEEEccCCCcc
Confidence 67788888888887643
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.7e-21 Score=198.56 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=100.6
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEecc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 84 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~ 84 (720)
++++++++++.++. +|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+..+. ..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45555555555542 23222 245555666665554433444555556666666665555442 235556666666
Q ss_pred CcchHHHH-hcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCch--hhHHHHHHhcCccceeeccCCC--
Q 005004 85 RSNMAQAV-LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSSYCP-- 159 (720)
Q Consensus 85 ~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~~-- 159 (720)
+|.+.... .-.++|++|++++|. ++. ..+..+..+++|++|++++|. +.. ..+..+ ..+++|++|++++|.
T Consensus 109 ~n~l~~l~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLKELPEKMPKTLQELRVHENE-ITK-VRKSVFNGLNQMIVVELGTNP-LKSSGIENGAF-QGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCSBCCSSCCTTCCEEECCSSC-CCB-BCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGG-GGCTTCCEEECCSSCCC
T ss_pred CCcCCccChhhcccccEEECCCCc-ccc-cCHhHhcCCccccEEECCCCc-CCccCcChhhc-cCCCCcCEEECCCCccc
Confidence 55544110 112456666666653 331 223445666666666666665 321 112222 256666666666665
Q ss_pred CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc
Q 005004 160 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 208 (720)
Q Consensus 160 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 208 (720)
.+|..+. ++|++|++++ +.++...+..+..+++|++|++++|.+.+
T Consensus 185 ~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SCCSSCC--TTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred cCCcccc--ccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 4444333 5677777766 35666656666667777777777665443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.1e-22 Score=204.55 Aligned_cols=246 Identities=16% Similarity=0.149 Sum_probs=138.0
Q ss_pred CcCCeeecCCCCCch--hhHHhhhcCCCCcEEEeCC-CccCCcccccccccCCCcEEEcccccce-eeeccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVM-RVSIRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~L~~L~l 83 (720)
.+++.|++++|.+++ ..|.+|.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+. .++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 578888888888887 7788888888888888884 7777778888888888888888888876 333
Q ss_pred cCcchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC-ccceeeccCCC---
Q 005004 84 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA-NLRILNSSYCP--- 159 (720)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~~--- 159 (720)
..+.++++|++|++++|. ++ ..+|..+..+++|++|++++|. +.+..+..+. .++ +|+.|++++|.
T Consensus 119 ------~~~~~l~~L~~L~Ls~N~-l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 119 ------DFLSQIKTLVTLDFSYNA-LS-GTLPPSISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp ------GGGGGCTTCCEEECCSSE-EE-SCCCGGGGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEEEE
T ss_pred ------HHHhCCCCCCEEeCCCCc-cC-CcCChHHhcCCCCCeEECcCCc-ccCcCCHHHh-hhhhcCcEEECcCCeeec
Confidence 223444444444444442 22 1233344444555555555444 3333333333 333 44555554443
Q ss_pred CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccc
Q 005004 160 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 239 (720)
Q Consensus 160 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~ 239 (720)
.+|..+..++ |+.|++++ +.+++..+..+..+++|++|++++|.+.+..+
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------- 238 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG---------------------------- 238 (313)
T ss_dssp ECCGGGGGCC-CSEEECCS-SEEEECCGGGCCTTSCCSEEECCSSEECCBGG----------------------------
T ss_pred cCChHHhCCc-ccEEECcC-CcccCcCCHHHhcCCCCCEEECCCCceeeecC----------------------------
Confidence 3344444443 55555555 34554455555556666666666654432221
Q ss_pred eeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCC
Q 005004 240 SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEG 318 (720)
Q Consensus 240 ~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (720)
.+..+++|+++++++|.+++..+..+.. +++|++|++++ |.+++..|.. ..+++|+.+++++|..
T Consensus 239 --~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-------l~~L~~L~Ls~-N~l~~~ip~~----~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 239 --KVGLSKNLNGLDLRNNRIYGTLPQGLTQ-------LKFLHSLNVSF-NNLCGEIPQG----GNLQRFDVSAYANNKC 303 (313)
T ss_dssp --GCCCCTTCCEEECCSSCCEECCCGGGGG-------CTTCCEEECCS-SEEEEECCCS----TTGGGSCGGGTCSSSE
T ss_pred --cccccCCCCEEECcCCcccCcCChHHhc-------CcCCCEEECcC-CcccccCCCC----ccccccChHHhcCCCC
Confidence 1233455666666666665443333222 35666666666 4555543332 4556666666666653
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.1e-20 Score=194.08 Aligned_cols=292 Identities=17% Similarity=0.130 Sum_probs=177.3
Q ss_pred ccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceeccccc
Q 005004 149 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 226 (720)
Q Consensus 149 ~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~ 226 (720)
+++.++++++. .+|..+. ++++.|++++ +.++...+..+..+++|++|++++|.+....|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEK-------------- 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGG--------------
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHh--------------
Confidence 46666666554 4554443 5677777776 366666566677777777777777654332221
Q ss_pred ccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCC
Q 005004 227 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 306 (720)
Q Consensus 227 ~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 306 (720)
.+.++++|+++++++|.++..... .+++|++|++++ +.++...+..+ ..++
T Consensus 97 ---------------~~~~l~~L~~L~L~~n~l~~l~~~----------~~~~L~~L~l~~-n~i~~~~~~~~---~~l~ 147 (332)
T 2ft3_A 97 ---------------AFSPLRKLQKLYISKNHLVEIPPN----------LPSSLVELRIHD-NRIRKVPKGVF---SGLR 147 (332)
T ss_dssp ---------------GSTTCTTCCEEECCSSCCCSCCSS----------CCTTCCEEECCS-SCCCCCCSGGG---SSCS
T ss_pred ---------------HhhCcCCCCEEECCCCcCCccCcc----------ccccCCEEECCC-CccCccCHhHh---CCCc
Confidence 244556667777777666543211 125777777777 56666555445 5677
Q ss_pred CccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccc
Q 005004 307 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 386 (720)
Q Consensus 307 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~ 386 (720)
+|++|++++|. ++.. +..|.. +..+ +|+.++
T Consensus 148 ~L~~L~l~~n~-l~~~------------------------------------------~~~~~~-----~~~l-~L~~L~ 178 (332)
T 2ft3_A 148 NMNCIEMGGNP-LENS------------------------------------------GFEPGA-----FDGL-KLNYLR 178 (332)
T ss_dssp SCCEEECCSCC-CBGG------------------------------------------GSCTTS-----SCSC-CCSCCB
T ss_pred cCCEEECCCCc-cccC------------------------------------------CCCccc-----ccCC-ccCEEE
Confidence 78888777765 2111 011111 2333 566666
Q ss_pred cccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCe
Q 005004 387 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 466 (720)
Q Consensus 387 l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 466 (720)
+++|.+ ..+|..+. ++|+.|++++| .+... .+..+..+++|++|++++|.+.... ...+..+++|++
T Consensus 179 l~~n~l--------~~l~~~~~--~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~ 245 (332)
T 2ft3_A 179 ISEAKL--------TGIPKDLP--ETLNELHLDHN-KIQAI-ELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRE 245 (332)
T ss_dssp CCSSBC--------SSCCSSSC--SSCSCCBCCSS-CCCCC-CTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCE
T ss_pred CcCCCC--------CccCcccc--CCCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCE
Confidence 666665 33444332 57777777776 34331 2244667777888888877766543 345777888888
Q ss_pred eecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhc---CCCCCcceeecCCCccchH-HHHHHHhhCCCCcE
Q 005004 467 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK---GSLPALQELDLSYGTLCQS-AIEELLAYCTHLTH 542 (720)
Q Consensus 467 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~i~~~-~~~~~l~~~~~L~~ 542 (720)
|++++|.+..+|..+..+++|+.|++++|+ ++......+... ...++|+.+++++|.+... ..+..+..+++|+.
T Consensus 246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp EECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred EECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 888888888877777888888888888876 766544443211 1145688888888877621 34456777888888
Q ss_pred EeccCcc
Q 005004 543 VSLNGCG 549 (720)
Q Consensus 543 L~l~~~~ 549 (720)
+++++|.
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 8888764
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.4e-20 Score=191.37 Aligned_cols=292 Identities=17% Similarity=0.133 Sum_probs=173.8
Q ss_pred ccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceeccccc
Q 005004 149 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 226 (720)
Q Consensus 149 ~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~ 226 (720)
+++.++++++. .+|..+. +.++.|++++ +.++...+..+..+++|++|++++|.+....|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPG-------------- 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--------------
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeCHH--------------
Confidence 45555555544 4444332 5666677766 366665555666677777777776654432221
Q ss_pred ccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCC
Q 005004 227 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 306 (720)
Q Consensus 227 ~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 306 (720)
.+..+++|+++++++|.++..... .+++|++|++++ +.+++..+..+ ..++
T Consensus 95 ---------------~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~~L~~L~l~~-n~l~~~~~~~~---~~l~ 145 (330)
T 1xku_A 95 ---------------AFAPLVKLERLYLSKNQLKELPEK----------MPKTLQELRVHE-NEITKVRKSVF---NGLN 145 (330)
T ss_dssp ---------------TTTTCTTCCEEECCSSCCSBCCSS----------CCTTCCEEECCS-SCCCBBCHHHH---TTCT
T ss_pred ---------------HhcCCCCCCEEECCCCcCCccChh----------hcccccEEECCC-CcccccCHhHh---cCCc
Confidence 134455666666666666543111 125777777777 56766665555 5677
Q ss_pred CccEEEeccCCCCceeccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccc
Q 005004 307 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 386 (720)
Q Consensus 307 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~ 386 (720)
+|++|++++|. +... +..+. .+..+++|+.++
T Consensus 146 ~L~~L~l~~n~-l~~~------------------------------------------~~~~~-----~~~~l~~L~~L~ 177 (330)
T 1xku_A 146 QMIVVELGTNP-LKSS------------------------------------------GIENG-----AFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSC-CCGG------------------------------------------GBCTT-----GGGGCTTCCEEE
T ss_pred cccEEECCCCc-CCcc------------------------------------------CcChh-----hccCCCCcCEEE
Confidence 77777777764 1110 00111 134455555666
Q ss_pred cccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCe
Q 005004 387 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 466 (720)
Q Consensus 387 l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 466 (720)
+++|.+ ..+|..+. ++|+.|++++| .+... .+..+..+++|++|++++|.+.... ...+..+++|++
T Consensus 178 l~~n~l--------~~l~~~~~--~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 244 (330)
T 1xku_A 178 IADTNI--------TTIPQGLP--PSLTELHLDGN-KITKV-DAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRE 244 (330)
T ss_dssp CCSSCC--------CSCCSSCC--TTCSEEECTTS-CCCEE-CTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCE
T ss_pred CCCCcc--------ccCCcccc--ccCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCE
Confidence 655555 33443332 67777777776 34432 2345667777888888877765432 345677788888
Q ss_pred eecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhc---CCCCCcceeecCCCccchH-HHHHHHhhCCCCcE
Q 005004 467 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK---GSLPALQELDLSYGTLCQS-AIEELLAYCTHLTH 542 (720)
Q Consensus 467 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~i~~~-~~~~~l~~~~~L~~ 542 (720)
|++++|.+..+|..+..+++|+.|++++|+ ++......+... ...++++.+++++|.+... ..+..+..+++++.
T Consensus 245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 888888888777777788888888888876 666544433111 1246778888888876532 23355667778888
Q ss_pred EeccCc
Q 005004 543 VSLNGC 548 (720)
Q Consensus 543 L~l~~~ 548 (720)
+++++|
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 888776
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3e-21 Score=198.27 Aligned_cols=283 Identities=12% Similarity=0.121 Sum_probs=142.3
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEecc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 84 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~ 84 (720)
+++.++++++.++. +|..+ .++|++|++++|.+....+..+.++++|++|++++|.+..+. .++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 46666666666652 33333 256666666666665444455666666666666666666552 346666666666
Q ss_pred CcchHHHHh-cCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCch--hhHHHHHHhcCccceeeccCCC-
Q 005004 85 RSNMAQAVL-NCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSSYCP- 159 (720)
Q Consensus 85 ~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~~- 159 (720)
+|.+..... -.++|++|++++|. ++ .++ ..+..+++|++|++++|. +.. ..+..+. .+ +|+.|++++|.
T Consensus 111 ~n~l~~l~~~~~~~L~~L~l~~n~-i~--~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 111 KNHLVEIPPNLPSSLVELRIHDNR-IR--KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFD-GL-KLNYLRISEAKL 184 (332)
T ss_dssp SSCCCSCCSSCCTTCCEEECCSSC-CC--CCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSC-SC-CCSCCBCCSSBC
T ss_pred CCcCCccCccccccCCEEECCCCc-cC--ccCHhHhCCCccCCEEECCCCc-cccCCCCccccc-CC-ccCEEECcCCCC
Confidence 666541111 11566677776664 44 222 345666677777777665 332 1122221 33 66677776665
Q ss_pred -CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhccc
Q 005004 160 -NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 238 (720)
Q Consensus 160 -~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l 238 (720)
.+|..+. ++|++|++++ +.++...+..+..+++|++|++++|.+....+..+. .+++|+.++++++.+
T Consensus 185 ~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 185 TGIPKDLP--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS--------FLPTLRELHLDNNKL 253 (332)
T ss_dssp SSCCSSSC--SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--------GCTTCCEEECCSSCC
T ss_pred CccCcccc--CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--------CCCCCCEEECCCCcC
Confidence 4444333 5677777766 466665556666677777777776654443221111 111111122222222
Q ss_pred cee--eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccc--hhhhhhhcCCCCCCCccEEEec
Q 005004 239 SSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT--NSVCEVFSDGGGCPMLKSLVLD 314 (720)
Q Consensus 239 ~~l--~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~L~~L~l~ 314 (720)
+.+ .+..++.|+.+++++|.+++.....+..... ....+.++.|++++ |.+. ...+..+ ..+++|+.++++
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~-N~~~~~~~~~~~~---~~l~~L~~l~l~ 328 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-GVKRAYYNGISLFN-NPVPYWEVQPATF---RCVTDRLAIQFG 328 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-CSSSCCBSEEECCS-SSSCGGGSCGGGG---TTBCCSTTEEC-
T ss_pred eecChhhhcCccCCEEECCCCCCCccChhHcccccc-ccccccccceEeec-CcccccccCcccc---cccchhhhhhcc
Confidence 222 2444555666666666655543222221100 00124556666665 3333 2233333 445556666655
Q ss_pred cC
Q 005004 315 NC 316 (720)
Q Consensus 315 ~~ 316 (720)
+|
T Consensus 329 ~n 330 (332)
T 2ft3_A 329 NY 330 (332)
T ss_dssp --
T ss_pred cc
Confidence 54
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=193.74 Aligned_cols=272 Identities=15% Similarity=0.107 Sum_probs=195.5
Q ss_pred ccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEE
Q 005004 6 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 81 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L 81 (720)
.|+...+.+.+++.++. +|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+..++ .++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~-iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSS-CCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccc-ccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 35555667788777764 34444 257888888888886544446788888888888888887764 357888888
Q ss_pred eccCcchH----HHHhcCCCceEEeeccccCcchhhHHH--HhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeec
Q 005004 82 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRL--AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNS 155 (720)
Q Consensus 82 ~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 155 (720)
++++|.+. ..+.++++|++|++++|. ++ .+|. .+..+++|++|++++|..+....+..+. .+++|++|++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l 181 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YK--TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEI 181 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CS--SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCC-Cc--ccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEEC
Confidence 88888776 458889999999999985 55 4454 6788999999999998545544444454 7899999999
Q ss_pred cCCC---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccch
Q 005004 156 SYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLN 232 (720)
Q Consensus 156 ~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~ 232 (720)
++|. ..+..+.++++|++|++++ +.+.......+..+++|++|++++|.+.+..+..++.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------- 244 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------- 244 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEEC-SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------
T ss_pred CCCCcCccCHHHHhccccCCeecCCC-CccccchhhhhhhcccccEEECCCCcccccccccccc----------------
Confidence 9987 3466788899999999998 4777666666667899999999998765433222211
Q ss_pred hhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEE
Q 005004 233 LRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLV 312 (720)
Q Consensus 233 l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~ 312 (720)
...+..++.+++..+.+++.. ...+......+++|++|++++ |.++.+....+ ..+++|++|+
T Consensus 245 ----------~~~~~~l~~l~L~~~~l~~~~---l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~---~~l~~L~~L~ 307 (353)
T 2z80_A 245 ----------GETNSLIKKFTFRNVKITDES---LFQVMKLLNQISGLLELEFSR-NQLKSVPDGIF---DRLTSLQKIW 307 (353)
T ss_dssp ------------CCCCCCEEEEESCBCCHHH---HHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEE
T ss_pred ----------ccccchhhccccccccccCcc---hhhhHHHHhcccCCCEEECCC-CCCCccCHHHH---hcCCCCCEEE
Confidence 223445677777777776532 223333445678999999999 68886554444 6789999999
Q ss_pred eccCCC
Q 005004 313 LDNCEG 318 (720)
Q Consensus 313 l~~~~~ 318 (720)
+++|..
T Consensus 308 L~~N~~ 313 (353)
T 2z80_A 308 LHTNPW 313 (353)
T ss_dssp CCSSCB
T ss_pred eeCCCc
Confidence 999873
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=4.4e-21 Score=194.76 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=174.1
Q ss_pred ccccccCcCCeeecCC-CCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccce-eee---ccCC
Q 005004 2 KAVSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-RVS---IRCP 76 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~---~~~~ 76 (720)
++|+++++|++|++++ |.+++..|.+|..+++|++|++++|.+.+.+|+.+.++++|++|++++|.+. .++ ..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 4688999999999996 9999999999999999999999999998889999999999999999999998 344 4689
Q ss_pred CccEEeccCcchH----HHHhcCC-CceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccc
Q 005004 77 QLEHLSLKRSNMA----QAVLNCP-LLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 151 (720)
Q Consensus 77 ~L~~L~l~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 151 (720)
+|++|++++|.+. ..+..++ +|++|++++|. ++ ..+|..+..++ |++|++++|. +....+..+. .+++|+
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~-~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~-~l~~L~ 224 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LT-GKIPPTFANLN-LAFVDLSRNM-LEGDASVLFG-SDKNTQ 224 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EE-EECCGGGGGCC-CSEEECCSSE-EEECCGGGCC-TTSCCS
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-ee-ccCChHHhCCc-ccEEECcCCc-ccCcCCHHHh-cCCCCC
Confidence 9999999999876 5677887 99999999985 54 24567778877 9999999997 6555555454 889999
Q ss_pred eeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccccccc
Q 005004 152 ILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL 212 (720)
Q Consensus 152 ~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 212 (720)
.|++++|. ..+..+..+++|++|++++ +.+++..+..+..+++|++|++++|.+.+.+|.
T Consensus 225 ~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCSSEECCBGGGCCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred EEECCCCceeeecCcccccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999987 3444577889999999999 588877888899999999999999988877664
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.8e-20 Score=189.91 Aligned_cols=204 Identities=19% Similarity=0.165 Sum_probs=170.8
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee---ccCCCccEEec
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSL 83 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~L~~L~l 83 (720)
.++++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+..++ ..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 478999999999998 66778888999999999999996 88998999999999999999998776 36899999999
Q ss_pred cCcchH----HH---------HhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCcc
Q 005004 84 KRSNMA----QA---------VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 150 (720)
Q Consensus 84 ~~~~~~----~~---------~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 150 (720)
++|++. .. +.++++|++|++++|. ++ .+|..++.+++|++|++++|. +.. .+..+. .+++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~-l~~-l~~~l~-~l~~L 231 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSP-LSA-LGPAIH-HLPKL 231 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSC-CCC-CCGGGG-GCTTC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCC-CCc-Cchhhc-cCCCC
Confidence 987654 22 3359999999999985 66 678889999999999999997 553 333444 88999
Q ss_pred ceeeccCCC---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccc
Q 005004 151 RILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQN 219 (720)
Q Consensus 151 ~~L~l~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 219 (720)
++|++++|. .+|..++.+++|++|++++| .+.+..+..+..+++|++|++++|...+.+|..+..+..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 999999986 67778889999999999995 666677778889999999999999998888876554443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.9e-20 Score=190.60 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=110.0
Q ss_pred cccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEecc
Q 005004 5 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK 84 (720)
Q Consensus 5 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~ 84 (720)
..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|++..++ ..++|++|+++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-~~~~L~~L~l~ 107 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-VGPSIETLHAA 107 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-ECTTCCEEECC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-CCCCcCEEECC
Confidence 345567777777777776666677777777777777776643332 566677777777777776665 44677777777
Q ss_pred CcchH-HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CC
Q 005004 85 RSNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NI 161 (720)
Q Consensus 85 ~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~ 161 (720)
+|.+. .....+++|++|++++|. ++. ..+..+..+++|++|++++|. +....+..+...+++|++|++++|. .+
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNK-ITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSC-CCS-GGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCccccCCCCEEECCCCC-CCC-ccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 76665 112335666777776664 441 112345556666666666665 4444444444355666666666664 22
Q ss_pred ccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 162 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
+ ....+++|++|++++ +.++...+ .+..+++|++|++++|.
T Consensus 185 ~-~~~~l~~L~~L~Ls~-N~l~~l~~-~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 185 K-GQVVFAKLKTLDLSS-NKLAFMGP-EFQSAAGVTWISLRNNK 225 (317)
T ss_dssp E-CCCCCTTCCEEECCS-SCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred c-cccccccCCEEECCC-CcCCcchh-hhcccCcccEEECcCCc
Confidence 1 222355555555555 24443322 24445555555555543
No 56
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4.7e-18 Score=174.99 Aligned_cols=193 Identities=17% Similarity=0.276 Sum_probs=151.1
Q ss_pred cCCeeecCCCCCchhhHHhhhcC--CCCcEEEeCCCccCCcccccccccCCCcEEEccccccee--ee---ccCCCccEE
Q 005004 9 NLEALTLGRGQLGDAFFHALADC--SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR--VS---IRCPQLEHL 81 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~---~~~~~L~~L 81 (720)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.. ++ ..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788999998887 5666666 8999999999998766555 5678999999999998753 22 568899999
Q ss_pred eccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcC-ccceeecc
Q 005004 82 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA-NLRILNSS 156 (720)
Q Consensus 82 ~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~ 156 (720)
++++|.+. ..+..+++|++|++++|..+++..++..+..+++|++|++++|..+++..+......++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99988765 56778899999999988668876788888889999999999983377665556555888 89999998
Q ss_pred CCC------CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 157 YCP------NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 157 ~~~------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
+|. .++..+.++++|++|++++|..+++..+..+.++++|++|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 884 2344556788888888888644777777777888888888888774
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.3e-19 Score=183.14 Aligned_cols=195 Identities=22% Similarity=0.273 Sum_probs=169.6
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccce-eeec-------
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-RVSI------- 73 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~------- 73 (720)
+.+.++++|++|++++|.++ .+|..|..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .++.
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 45788999999999999998 78889999999999999999996 78988999999999999997654 3331
Q ss_pred -----cCCCccEEeccCcchH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHH
Q 005004 74 -----RCPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL 145 (720)
Q Consensus 74 -----~~~~L~~L~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 145 (720)
++++|++|++++|.+. ..+.++++|++|++++|. ++ .+|..+..+++|++|++++|. +....+..+.
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~--~l~~~l~~l~~L~~L~Ls~n~-~~~~~p~~~~- 250 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LS--ALGPAIHHLPKLEELDLRGCT-ALRNYPPIFG- 250 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CC--CCCGGGGGCTTCCEEECTTCT-TCCBCCCCTT-
T ss_pred hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CC--cCchhhccCCCCCEEECcCCc-chhhhHHHhc-
Confidence 3899999999999876 568899999999999996 66 567789999999999999997 4545555555
Q ss_pred hcCccceeeccCCC---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCC
Q 005004 146 SCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 204 (720)
Q Consensus 146 ~l~~L~~L~l~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 204 (720)
.+++|+.|++++|. .+|..+.++++|++|++++| .+.+..|..+.++++|+.+++..+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC-VNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC-TTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC-CchhhccHHHhhccCceEEeCCHH
Confidence 89999999999986 77888999999999999995 777788899999999999999765
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.5e-19 Score=180.68 Aligned_cols=194 Identities=22% Similarity=0.243 Sum_probs=96.7
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCC--cccccccccCCCcEEEcccccceeee---ccCCCccEEe
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLS 82 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~L~~L~ 82 (720)
++++.|++++|.++.+.+..|+++++|++|++++|.+.. ..+..+..+++|++|++++|.+..++ ..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 356666666666665444455666666666666665542 12344445566666666666665544 2455566666
Q ss_pred ccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCch-hhHHHHHHhcCccceeecc
Q 005004 83 LKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALSCANLRILNSS 156 (720)
Q Consensus 83 l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L~l~ 156 (720)
+++|.+. ..+..+++|++|++++|. ++ ...+..+..+++|++|++++|. +.+ ..+..+. .+++|++|+++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-~l~~L~~L~Ls 183 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TR-VAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFT-ELRNLTFLDLS 183 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSC-CE-ECSTTTTTTCTTCCEEECTTCE-EGGGEECSCCT-TCTTCCEEECT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCc-CC-ccchhhcccCcCCCEEECCCCc-cccccchhHHh-hCcCCCEEECC
Confidence 6555544 134455555555555553 32 1223344555555555555554 322 1122222 44555555555
Q ss_pred CCC--CC-ccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcc
Q 005004 157 YCP--NI-SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 206 (720)
Q Consensus 157 ~~~--~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 206 (720)
+|. .+ +..+..+++|++|++++ +.++...+..+..+++|++|++++|.+
T Consensus 184 ~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 184 QCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCcCCcCHHHhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCC
Confidence 544 12 33344445555555554 244443333444445555555554443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3.1e-19 Score=181.65 Aligned_cols=248 Identities=14% Similarity=0.135 Sum_probs=185.0
Q ss_pred ccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCcee
Q 005004 243 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 322 (720)
Q Consensus 243 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 322 (720)
+..+++|+++++++|.+++..+..+. .+++|++|++++ +.+++..+ + ..+++|++|++++|. ++.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~Ls~-n~l~~~~~--~---~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLA-------PFTKLELLNLSS-NVLYETLD--L---ESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHT-------TCTTCCEEECTT-SCCEEEEE--E---TTCTTCCEEECCSSE-EEEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhh-------CCCcCCEEECCC-CcCCcchh--h---hhcCCCCEEECcCCc-cccc
Confidence 44566788888888888765433222 347888888888 57766543 3 678888888888875 3332
Q ss_pred ccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCccc
Q 005004 323 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 402 (720)
Q Consensus 323 ~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~ 402 (720)
+ ..++|+++++++|.- ..+....+++|+.+++++|.++ +.
T Consensus 96 ~----------------------~~~~L~~L~l~~n~l-----------~~~~~~~~~~L~~L~l~~N~l~-------~~ 135 (317)
T 3o53_A 96 L----------------------VGPSIETLHAANNNI-----------SRVSCSRGQGKKNIYLANNKIT-------ML 135 (317)
T ss_dssp E----------------------ECTTCCEEECCSSCC-----------SEEEECCCSSCEEEECCSSCCC-------SG
T ss_pred c----------------------CCCCcCEEECCCCcc-----------CCcCccccCCCCEEECCCCCCC-------Cc
Confidence 2 126677777776531 1122344678888899988873 33
Q ss_pred ccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHh
Q 005004 403 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFE 482 (720)
Q Consensus 403 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 482 (720)
.+..+..+++|+.|++++| .+...........+++|++|++++|.+... .....+++|++|++++|.++++++.+.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp GGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred cchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhhc
Confidence 3456778899999999998 566544444456789999999999987664 233458999999999999999988899
Q ss_pred ccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCccc
Q 005004 483 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHD 553 (720)
Q Consensus 483 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 553 (720)
.+++|+.|++++|. ++.+ +..+ ..+++|+.|++++|.+....++..+..+++|+.+++.++..+..
T Consensus 212 ~l~~L~~L~L~~N~-l~~l-~~~~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVLI-EKAL---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGTTCSEEECTTSC-CCEE-CTTC---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccCcccEEECcCCc-ccch-hhHh---hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 99999999999987 7754 3333 78899999999999998447888899999999999998776543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.6e-19 Score=188.93 Aligned_cols=218 Identities=17% Similarity=0.116 Sum_probs=139.0
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l 83 (720)
+++++|++++|.|+++.+++|.++++|++|+|++|.+.+..+..+.++++|++|++++|++..++. ++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 467788888888877777778888888888888887766556677777888888888887776652 3677777777
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 158 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 158 (720)
++|.+. ..+.++++|++|++++|+.+. .++ ..+..+++|++|++++|. +... ..+. .+++|+.|++++|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~-~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLE--YISEGAFEGLFNLKYLNLGMCN-IKDM--PNLT-PLVGLEELEMSGN 228 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCC--EECTTTTTTCTTCCEEECTTSC-CSSC--CCCT-TCTTCCEEECTTS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCcc--ccChhhccCCCCCCEEECCCCc-cccc--cccc-ccccccEEECcCC
Confidence 777665 356667777777777655444 222 345666777777777765 3321 1222 5566666666666
Q ss_pred C---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhh
Q 005004 159 P---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 235 (720)
Q Consensus 159 ~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~ 235 (720)
. ..+..+.++++|+.|++++ +.++...+..+..+++|++|++++|.+....+.
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------- 284 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHD----------------------- 284 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----------------------
T ss_pred cCcccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCCcCCccChH-----------------------
Confidence 5 2234455566666666666 355555555555666666666666543321110
Q ss_pred cccceeeccCCCcccEEEeccCcccc
Q 005004 236 MMLSSIMVSNCAALHRINITSNSLQK 261 (720)
Q Consensus 236 ~~l~~l~~~~~~~L~~l~l~~~~~~~ 261 (720)
.+..+++|+.+++++|.+..
T Consensus 285 ------~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 285 ------LFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ------SSTTCTTCCEEECCSSCEEC
T ss_pred ------HhccccCCCEEEccCCCcCC
Confidence 24566778888888887654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=175.99 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=110.2
Q ss_pred cCCCCCCcccccccceeeeeeecCcccccc--cccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCch
Q 005004 376 LGICPKLSTLGIEALHMVVLELKGCGVLSD--AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD 453 (720)
Q Consensus 376 ~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 453 (720)
+.++++|+.+++++|.+ ..++. .+..+++|+.|++++|..+.. ..+..+..+++|++|++++|.+....
T Consensus 120 ~~~l~~L~~L~L~~n~l--------~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPY--------KTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HTTCTTCSEEECTTCCC--------SSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred hCCCccCCEEECCCCCC--------cccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccC
Confidence 45566777777777766 44444 566778888888888743433 12345667788888888888765543
Q ss_pred hhHHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchH---H
Q 005004 454 GLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS---A 529 (720)
Q Consensus 454 ~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~---~ 529 (720)
+..+..+++|++|++++|.+..++. .+..+++|+.|++++|. +++.....+......+.++.++++++.+++. .
T Consensus 191 -~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 191 -PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp -TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred -HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhh
Confidence 4567778888888888888887777 44567888888888876 6554333332224566777888888777653 3
Q ss_pred HHHHHhhCCCCcEEeccCcc
Q 005004 530 IEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 530 ~~~~l~~~~~L~~L~l~~~~ 549 (720)
++..+..+++|++|++++|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 55667788888888888875
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=185.54 Aligned_cols=219 Identities=18% Similarity=0.141 Sum_probs=128.1
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l 83 (720)
++++.|++++|.++.+.+.+|.++++|++|+|++|.+....+..+.++++|++|++++|++..++. .+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 456777777777777666777777777777777777655555666667777777777777765542 4566666666
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
++|.+. ..+.++++|++|++++|+.+.. ..+..+..+++|++|++++|. +... ..+. .+++|+.|++++|.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~-~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCN-LREI--PNLT-PLIKLDELDLSGNH 218 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSC-CSSC--CCCT-TCSSCCEEECTTSC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCc-Cccc--cccC-CCcccCEEECCCCc
Confidence 666654 3455666666666666543431 112345566666666666664 3311 1122 45555666665554
Q ss_pred --C-CccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhc
Q 005004 160 --N-ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 236 (720)
Q Consensus 160 --~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~ 236 (720)
. .+..+..+++|+.|++++ +.++...+..+..+++|++|++++|.+....+.
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------ 273 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD------------------------ 273 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT------------------------
T ss_pred cCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccChh------------------------
Confidence 2 233445555555555555 355555555555555555555555533321110
Q ss_pred ccceeeccCCCcccEEEeccCcccc
Q 005004 237 MLSSIMVSNCAALHRINITSNSLQK 261 (720)
Q Consensus 237 ~l~~l~~~~~~~L~~l~l~~~~~~~ 261 (720)
.+..+++|+.+++++|.+..
T Consensus 274 -----~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 274 -----LFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -----TTSSCTTCCEEECCSSCEEC
T ss_pred -----HhccccCCCEEEcCCCCccC
Confidence 25566778888888887654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-18 Score=187.92 Aligned_cols=191 Identities=19% Similarity=0.193 Sum_probs=135.3
Q ss_pred ccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccC
Q 005004 6 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 85 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~ 85 (720)
.+++|+.|++++|.+++..|..|..+++|++|+|++|.+.+..| +..+++|++|++++|.+..++ ..++|++|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-VGPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-ECTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-CCCCcCEEECcC
Confidence 45589999999999998888899999999999999998865444 788899999999999998887 448888898888
Q ss_pred cchH-HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCc
Q 005004 86 SNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS 162 (720)
Q Consensus 86 ~~~~-~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~ 162 (720)
|.+. .....+++|+.|++++|. ++. ..|..++.+++|++|++++|. +.+..+..+...+++|+.|++++|. .+
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNK-ITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSC-CCS-GGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCCCCccccCCCCEEECCCCC-CCC-CCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 8876 222346788888888875 552 234566778888888888886 6655566665467778888877775 22
Q ss_pred cccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 163 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 163 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
.....+++|+.|++++ +.+++..+ .+..+++|+.|++++|.
T Consensus 185 ~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSS-NKLAFMGP-EFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ECCCCCTTCCEEECCS-SCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred cccccCCCCCEEECCC-CCCCCCCH-hHcCCCCccEEEecCCc
Confidence 2223456666666666 35554332 24555555555555554
No 64
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=5.5e-18 Score=177.85 Aligned_cols=203 Identities=16% Similarity=0.241 Sum_probs=127.4
Q ss_pred cccccCcCCeeecCCCCCchhhHHh----hhcCCCCcEEEeCCCcc---CCcccccc-------cccCCCcEEEcccccc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHA----LADCSMLKSLNVNDATL---GNGVQEIP-------INHDQLRRLEITKCRV 68 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~----~~~~~~L~~L~l~~~~l---~~~~~~~~-------~~l~~L~~L~l~~~~~ 68 (720)
.+..+++|+.|++++|.++...+.+ |..+++|++|+|++|.+ .+.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4566778888888888887765544 55788888888887643 23334333 5677888888888877
Q ss_pred ee-----ee---ccCCCccEEeccCcchH--------HHHhcC---------CCceEEeeccccCcchhhHH---HHhhc
Q 005004 69 MR-----VS---IRCPQLEHLSLKRSNMA--------QAVLNC---------PLLHLLDIASCHKLSDAAIR---LAATS 120 (720)
Q Consensus 69 ~~-----~~---~~~~~L~~L~l~~~~~~--------~~~~~l---------~~L~~L~l~~~~~l~~~~l~---~~~~~ 120 (720)
.. ++ ..+++|++|++++|.+. ..+..+ ++|++|++++|. +++..++ ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHh
Confidence 65 22 35677777777777664 122333 777777777774 6545555 45667
Q ss_pred CCCCCEEEecCCCCCchhhHHHHH----HhcCccceeeccCCC-------CCccccccCCcCcEEeccCCCCCchhhH--
Q 005004 121 CPQLESLDMSNCSCVSDESLREIA----LSCANLRILNSSYCP-------NISLESVRLPMLTVLQLHSCEGITSASM-- 187 (720)
Q Consensus 121 l~~L~~L~l~~~~~l~~~~~~~~~----~~l~~L~~L~l~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~~~~-- 187 (720)
+++|++|++++|. +.+.....+. ..+++|+.|++++|. .++..+..+++|++|++++| .+++...
T Consensus 186 ~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHH
T ss_pred CCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHH
Confidence 7777777777776 5544433322 256677777777765 13445566677777777763 5665532
Q ss_pred --HHhhc--cccccEEeccCCcccc
Q 005004 188 --AAISH--SYMLEVLELDNCNLLT 208 (720)
Q Consensus 188 --~~l~~--~~~L~~L~l~~~~~~~ 208 (720)
..+.. +++|++|++++|.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCH
Confidence 33322 5667777776665443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.1e-18 Score=172.87 Aligned_cols=198 Identities=15% Similarity=0.098 Sum_probs=158.1
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEccccc-ceeee----ccCCCccEE
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR-VMRVS----IRCPQLEHL 81 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~----~~~~~L~~L 81 (720)
.++++.|++++|.++++.+..|..+++|++|++++|.+.+..+..+..+++|++|++++|+ +..++ ..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4688999999999998888889999999999999998876667888889999999999997 76663 358899999
Q ss_pred eccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccC
Q 005004 82 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 157 (720)
Q Consensus 82 ~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 157 (720)
++++|.+. ..+.++++|++|++++|. ++. ..+..+..+++|++|++++|. +.......+. .+++|+.|++++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQA-LPDDTFRDLGNLTHLFLHGNR-ISSVPERAFR-GLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccc-cCHhHhccCCCccEEECCCCc-ccccCHHHhc-CccccCEEECCC
Confidence 99998776 457788999999999885 552 223457788999999999986 5543333344 788999999998
Q ss_pred CC---CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccc
Q 005004 158 CP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 209 (720)
Q Consensus 158 ~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 209 (720)
|. ..+..+..+++|+.|++++ +.+++..+..+..+++|++|++++|.+...
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 87 3366777888999999998 588887778888889999999998876543
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.1e-18 Score=174.85 Aligned_cols=187 Identities=17% Similarity=0.112 Sum_probs=105.5
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee------ccCCCccEEecc
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS------IRCPQLEHLSLK 84 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~L~~L~l~ 84 (720)
+.++.+++.++. +|..+ .++|++|++++|.+....+..+.++++|++|++++|.+.... ..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 567888877764 34333 368999999999886433445678899999999998886542 246666777766
Q ss_pred CcchH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--
Q 005004 85 RSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 159 (720)
Q Consensus 85 ~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-- 159 (720)
+|.+. ..+..+++|++|++++|. ++.......+..+++|++|++++|. +....+..+. .+++|++|++++|.
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFN-GLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred CCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccchhhcc-cCcCCCEEECCCCccc
Confidence 66554 234556666666666653 4321111345556666666666664 3322222222 45555555555553
Q ss_pred C--CccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCC
Q 005004 160 N--ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 204 (720)
Q Consensus 160 ~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 204 (720)
. +|..+..+++|++|++++ +.++...+..+..+++|++|++++|
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC
Confidence 1 333444444555555544 2444433444444444444444444
No 67
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=2.2e-17 Score=173.23 Aligned_cols=259 Identities=16% Similarity=0.101 Sum_probs=183.6
Q ss_pred ccccccccCCCCccEEeccCCCCCcchh---hhhhhccCCCccEEeecCCCCCCc--hhhH-------HhhcCCCCCeee
Q 005004 401 GVLSDAYINCPLLTSLDASFCSQLKDDC---LSATTTSCPLIESLILMSCQSIGP--DGLY-------SLRSLQNLTMLD 468 (720)
Q Consensus 401 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~--~~~~-------~~~~~~~L~~L~ 468 (720)
..++..+..+++|+.|++++| .+.+.. +...+..+++|++|++++|..... ..+. .+..+++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 456667778899999999998 565543 333466889999999999754432 1122 246889999999
Q ss_pred cCCcccCC-----hhHHHhccccccEEEcCCCCCCChhHHHHHHh-cCCC---------CCcceeecCCCccchHHHH--
Q 005004 469 LSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTSLESLYK-KGSL---------PALQELDLSYGTLCQSAIE-- 531 (720)
Q Consensus 469 l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~---------~~L~~L~l~~~~i~~~~~~-- 531 (720)
+++|.+.. ++..+..+++|+.|++++|. +++..+..++. +..+ ++|++|++++|++++..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 99999986 66788999999999999988 77665555432 2333 8999999999999854555
Q ss_pred -HHHhhCCCCcEEeccCccCcccccccccCCCCCCCCccccccccCCCcccccccccchhccccccccCCCCccccCcC-
Q 005004 532 -ELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIP- 609 (720)
Q Consensus 532 -~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~c~~l~~~~~~- 609 (720)
..+..+++|++|++++|. +.+.+. .. .++
T Consensus 180 ~~~l~~~~~L~~L~L~~n~-l~~~g~-----------------------------------------------~~-l~~~ 210 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNG-IRPEGI-----------------------------------------------EH-LLLE 210 (386)
T ss_dssp HHHHHHCTTCCEEECCSSC-CCHHHH-----------------------------------------------HH-HHHT
T ss_pred HHHHHhCCCcCEEECcCCC-CCHhHH-----------------------------------------------HH-HHHH
Confidence 567789999999999985 221100 00 012
Q ss_pred CccccCCccEEEcCCCcC-------hHHHHhhCCCccEEecccccc----hhhhhh-----cCCcccEEEeecccCChh-
Q 005004 610 PQARCFHLSSLNLSLSAN-------LKEVDVACFNLCFLNLSNCCS----LETLKL-----DCPKLTSLFLQSCNIDEE- 672 (720)
Q Consensus 610 ~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~L~~L~l~~~~~----L~~l~~-----~~~~L~~L~l~~~~i~~~- 672 (720)
.+..+++|+.|+++++.- +......+++|+.|++++|.. ...++. .+++|++|++++|.|++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 356677888888887653 223334678999999998872 122232 279999999999999854
Q ss_pred --hHHHHH-hcCCCcceEeccCCcCCCchh--HHHHHHhCCCcc
Q 005004 673 --GVESAI-TQCGMLETLDVRFCPKICSTS--MGRLRAACPSLK 711 (720)
Q Consensus 673 --~~~~~~-~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~p~l~ 711 (720)
.++..+ .++++|+.|++++|+ ++... +..+...+|+++
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcC
Confidence 355555 678999999999996 44433 566666666655
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.7e-18 Score=172.61 Aligned_cols=197 Identities=15% Similarity=0.106 Sum_probs=163.8
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
++++.|++++|.+++..+..|.++++|++|++++|.+....+..+.++++|++|++++|++..++ .++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999988889999999999999999997666667889999999999999998776 46899999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccc----eeec
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR----ILNS 155 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~----~L~l 155 (720)
++|.+. ..+.++++|++|++++|. ++...+|..+..+++|++|++++|. +....+..+. .+++|+ .|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR-VLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH-HHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhh-hhhhccccceeeec
Confidence 999876 247889999999999985 6644467889999999999999997 6544333333 444555 8999
Q ss_pred cCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc
Q 005004 156 SYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 208 (720)
Q Consensus 156 ~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 208 (720)
++|. .++.......+|+.|++++ +.++...+..+..+++|++|++++|++..
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCcccc
Confidence 9987 5666666667899999999 47887777777889999999999997664
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=6.6e-18 Score=173.87 Aligned_cols=196 Identities=16% Similarity=0.266 Sum_probs=165.9
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCc-ccccccccCCCcEEEcccccceeee----ccCCCccEEe
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG-VQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 82 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~ 82 (720)
++++.|++++|.+++..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.... +.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 8899999999999877665 55799999999999998755 8888889999999999999876321 4699999999
Q ss_pred ccCc-chH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCC-CCCEEEecCCC-CCchhhHHHHHHhcCccceee
Q 005004 83 LKRS-NMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCS-CVSDESLREIALSCANLRILN 154 (720)
Q Consensus 83 l~~~-~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~-~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~ 154 (720)
+++| .+. ..+.++++|++|++++|..+++..++..+..++ +|++|++++|. .+++..+......+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9998 443 557889999999999995588777888999999 99999999995 366566666666899999999
Q ss_pred ccCCC----CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCC
Q 005004 155 SSYCP----NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 204 (720)
Q Consensus 155 l~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 204 (720)
+++|. ..+..+.++++|++|++++|..+.+.....+.++++|++|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99997 234567889999999999987777777778889999999999988
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=182.52 Aligned_cols=199 Identities=21% Similarity=0.193 Sum_probs=171.9
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCC
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQ 77 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~ 77 (720)
.+|.++++|++|++++|.++.+.+.+|.++++|++|+|++|.+....+..+..+++|++|++++|++..++. .+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 468899999999999999999999999999999999999999976556678899999999999999998773 6899
Q ss_pred ccEEeccCcchH-----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccce
Q 005004 78 LEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRI 152 (720)
Q Consensus 78 L~~L~l~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 152 (720)
|++|++++++.. ..+.++++|++|++++|. ++ .+| .+..+++|++|++++|. +....+..+. .+++|+.
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~--~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~ 235 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LR--EIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQ-GLMHLQK 235 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CS--SCC-CCTTCSSCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cc--ccc-ccCCCcccCEEECCCCc-cCccChhhhc-cCccCCE
Confidence 999999985432 468899999999999995 66 344 47889999999999997 7765555555 8999999
Q ss_pred eeccCCC--C-CccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccc
Q 005004 153 LNSSYCP--N-ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 207 (720)
Q Consensus 153 L~l~~~~--~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (720)
|++++|. . .+..+..+++|+.|++++ +.++...+..+..+++|+.|++++|++.
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999997 3 344678899999999999 5888888888889999999999999764
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=9e-18 Score=168.27 Aligned_cols=135 Identities=21% Similarity=0.163 Sum_probs=67.2
Q ss_pred ccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhccc
Q 005004 407 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 485 (720)
Q Consensus 407 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~ 485 (720)
+..+++|++|++++| .+.. ..+..+..+++|++|++++|.+.... ...+..+++|++|++++|.+++++. .+..++
T Consensus 101 ~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRC-GLQE-LGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hcCCcCCCEEECCCC-cCCE-ECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 344445555555554 2222 11233444555555555555444322 2234455555555555555555444 355555
Q ss_pred cccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCcc
Q 005004 486 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 486 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+|+.|++++|. +++..+..+ ..+++|+.|++++|++++ ..+..+..+++|+.|++++|+
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHPHAF---RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCc-ccccCHhHc---cCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCC
Confidence 55555555554 444433333 445556666666665554 333445555666666666554
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=6.2e-18 Score=181.31 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=112.0
Q ss_pred cCCCCCCcccccccceeeeeeecCccccc-ccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchh
Q 005004 376 LGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG 454 (720)
Q Consensus 376 ~~~~~~L~~l~l~~~~l~~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 454 (720)
+.++++|+.+++++|.++ .++ ..+..+++|+.|++++|..+... .+..+..+++|++|++++|.+...
T Consensus 143 ~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE--------SIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp SSSCTTCCEEECCSCCCC--------EECTTTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred hcccCCCCEEECCCCCcc--------eeCHhHHhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCccccc--
Confidence 455677777777777763 333 35667788888888876555442 223466778888888888876653
Q ss_pred hHHhhcCCCCCeeecCCcccCCh-hHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHH
Q 005004 455 LYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 533 (720)
Q Consensus 455 ~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~ 533 (720)
..+..+++|++|++++|.+.++ +..|..+++|+.|++++|. ++...+..+ ..+++|+.|++++|+++. ..+..
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~ 285 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAF---DGLASLVELNLAHNNLSS-LPHDL 285 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCTTS
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHh---cCCCCCCEEECCCCcCCc-cChHH
Confidence 3466778888888888888876 4477888888888888876 766655544 677888888888888875 44455
Q ss_pred HhhCCCCcEEeccCccC
Q 005004 534 LAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 534 l~~~~~L~~L~l~~~~~ 550 (720)
+..+++|+.|++++|+.
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 66778888888888763
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=5.6e-18 Score=171.91 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=73.5
Q ss_pred cCCCCcEEEeCCCccCCcccccc--cccCCCcEEEcccccceeeec---cC-----CCccEEeccCcchH----HHHhcC
Q 005004 30 DCSMLKSLNVNDATLGNGVQEIP--INHDQLRRLEITKCRVMRVSI---RC-----PQLEHLSLKRSNMA----QAVLNC 95 (720)
Q Consensus 30 ~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~-----~~L~~L~l~~~~~~----~~~~~l 95 (720)
++++|++|++++|.+.+.+|..+ ..+++|++|++++|++...+. .+ ++|++|++++|.+. ..+.++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 45566666666666555555543 555666666666666554431 12 55666666655554 344555
Q ss_pred CCceEEeeccccCcchhhHHHHh--hcCCCCCEEEecCCCCCch--hhHHHHHHhcCccceeeccCCC--CCc--ccccc
Q 005004 96 PLLHLLDIASCHKLSDAAIRLAA--TSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSSYCP--NIS--LESVR 167 (720)
Q Consensus 96 ~~L~~L~l~~~~~l~~~~l~~~~--~~l~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~~--~~~--~~~~~ 167 (720)
++|++|++++|.......++..+ ..+++|++|++++|. +.. ..+..++..+++|++|++++|. ..+ ..+..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 56666666655311111223333 555666666666654 331 2233333345556666665554 111 12233
Q ss_pred CCcCcEEeccC
Q 005004 168 LPMLTVLQLHS 178 (720)
Q Consensus 168 ~~~L~~L~l~~ 178 (720)
+++|++|++++
T Consensus 252 l~~L~~L~Ls~ 262 (312)
T 1wwl_A 252 PSQLNSLNLSF 262 (312)
T ss_dssp CTTCCEEECTT
T ss_pred cCCCCEEECCC
Confidence 44555555554
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=2.4e-17 Score=171.06 Aligned_cols=146 Identities=13% Similarity=0.069 Sum_probs=93.6
Q ss_pred eeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCccc----ccccccC-CCcEEEcccccceeee----cc-----CCC
Q 005004 12 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQ----EIPINHD-QLRRLEITKCRVMRVS----IR-----CPQ 77 (720)
Q Consensus 12 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~----~~-----~~~ 77 (720)
++++++|.+++..|..+...++|++|++++|.+.+.-+ +.+..++ +|++|++++|.+.... .. +++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888988888777777779999999998865444 5666677 7888888888886543 11 267
Q ss_pred ccEEeccCcchH--------HHHhcC-CCceEEeeccccCcchhhHH---HHhhc-CCCCCEEEecCCCCCchhhHHHHH
Q 005004 78 LEHLSLKRSNMA--------QAVLNC-PLLHLLDIASCHKLSDAAIR---LAATS-CPQLESLDMSNCSCVSDESLREIA 144 (720)
Q Consensus 78 L~~L~l~~~~~~--------~~~~~l-~~L~~L~l~~~~~l~~~~l~---~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~ 144 (720)
|++|++++|.+. ..+..+ ++|++|++++|. +++.... ..+.. .++|++|++++|. +++..+..+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHH
Confidence 777777777665 224444 677777777764 5543322 22333 3577777777775 5544433332
Q ss_pred H---hcC-ccceeeccCCC
Q 005004 145 L---SCA-NLRILNSSYCP 159 (720)
Q Consensus 145 ~---~l~-~L~~L~l~~~~ 159 (720)
. .++ +|++|++++|.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC
T ss_pred HHHhcCCccccEeeecCCC
Confidence 1 233 66666666654
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=3.3e-17 Score=179.97 Aligned_cols=254 Identities=18% Similarity=0.145 Sum_probs=181.1
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcc
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 87 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~ 87 (720)
.+++.|++++|.++ .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|++..++..+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 35889999999888 4555554 78999999999885 5665 5788999999999998888888999999999998
Q ss_pred hHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCcccc
Q 005004 88 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLES 165 (720)
Q Consensus 88 ~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~ 165 (720)
+......+++|+.|++++|. ++ .+|. .+++|++|++++|. +... + ..+.+|+.|++++|. .+|
T Consensus 113 l~~l~~~l~~L~~L~L~~N~-l~--~lp~---~l~~L~~L~Ls~N~-l~~l-~----~~~~~L~~L~L~~N~l~~l~--- 177 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGNQ-LT--SLPV---LPPGLQELSVSDNQ-LASL-P----ALPSELCKLWAYNNQLTSLP--- 177 (622)
T ss_dssp CCCCCCCCTTCCEEECCSSC-CS--CCCC---CCTTCCEEECCSSC-CSCC-C----CCCTTCCEEECCSSCCSCCC---
T ss_pred CCCCCCCCCCcCEEECCCCC-CC--cCCC---CCCCCCEEECcCCc-CCCc-C----CccCCCCEEECCCCCCCCCc---
Confidence 87433467889999999885 55 3443 35889999999886 5431 1 145788899998886 555
Q ss_pred ccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccC
Q 005004 166 VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSN 245 (720)
Q Consensus 166 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~ 245 (720)
..+++|+.|++++ +.++.... ..++|+.|++++|.+. .+|..+++|+.|++. ++.++.+. ..
T Consensus 178 ~~~~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls-----------~N~L~~lp-~~ 239 (622)
T 3g06_A 178 MLPSGLQELSVSD-NQLASLPT----LPSELYKLWAYNNRLT-SLPALPSGLKELIVS-----------GNRLTSLP-VL 239 (622)
T ss_dssp CCCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCS-SCCCCCTTCCEEECC-----------SSCCSCCC-CC
T ss_pred ccCCCCcEEECCC-CCCCCCCC----ccchhhEEECcCCccc-ccCCCCCCCCEEEcc-----------CCccCcCC-CC
Confidence 4568888899888 46664221 2478888888887654 344444445554443 34444333 45
Q ss_pred CCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCC
Q 005004 246 CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 317 (720)
Q Consensus 246 ~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (720)
+++|+.+++++|.++.... .+++|+.|++++ |.++.+ +..+ ..+++|+.|++++|.
T Consensus 240 l~~L~~L~Ls~N~L~~lp~-----------~~~~L~~L~Ls~-N~L~~l-p~~l---~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM-----------LPSGLLSLSVYR-NQLTRL-PESL---IHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-----------CCTTCCEEECCS-SCCCSC-CGGG---GGSCTTCEEECCSCC
T ss_pred CCcCcEEECCCCCCCcCCc-----------ccccCcEEeCCC-CCCCcC-CHHH---hhccccCEEEecCCC
Confidence 6788888888888875421 247888888888 577744 3444 577888888888886
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.7e-17 Score=178.70 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=180.9
Q ss_pred cCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCceec
Q 005004 244 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 323 (720)
Q Consensus 244 ~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 323 (720)
..+++|+.|++++|.+++..+..+.. +++|++|++++ |.+++..+ +..+++|++|++++|. ++.++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~-N~l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAP-------FTKLELLNLSS-NVLYETLD-----LESLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTT-------CTTCCEEECTT-SCCEEEEE-----CTTCTTCCEEECCSSE-EEEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhC-------CCCCCEEEeeC-CCCCCCcc-----cccCCCCCEEEecCCc-CCCCC
Confidence 34567888888888887764444333 48899999988 57776543 3788889999998885 43332
Q ss_pred cccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCcccc
Q 005004 324 FCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVL 403 (720)
Q Consensus 324 ~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~~ 403 (720)
..++|+++++++|.--. + ....+++|+.+++++|.++ +..
T Consensus 97 ----------------------~~~~L~~L~L~~N~l~~----~-------~~~~l~~L~~L~L~~N~l~-------~~~ 136 (487)
T 3oja_A 97 ----------------------VGPSIETLHAANNNISR----V-------SCSRGQGKKNIYLANNKIT-------MLR 136 (487)
T ss_dssp ----------------------ECTTCCEEECCSSCCCC----E-------EECCCSSCEEEECCSSCCC-------SGG
T ss_pred ----------------------CCCCcCEEECcCCcCCC----C-------CccccCCCCEEECCCCCCC-------CCC
Confidence 12667777777764211 1 1234678888899988874 445
Q ss_pred cccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhc
Q 005004 404 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFES 483 (720)
Q Consensus 404 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~ 483 (720)
|..+..+++|+.|++++| .++..........+++|+.|++++|.+... .....+++|+.|++++|.++++|+.+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 212 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQS 212 (487)
T ss_dssp GBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred chhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhHcC
Confidence 667888999999999998 566543334445789999999999987754 2344689999999999999999888999
Q ss_pred cccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccC
Q 005004 484 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 547 (720)
Q Consensus 484 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~ 547 (720)
+++|+.|++++|. ++++ +..+ ..+++|+.|++++|.+....++..+..++.|+.+++..
T Consensus 213 l~~L~~L~Ls~N~-l~~l-p~~l---~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVLI-EKAL---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp GTTCSEEECTTSC-CCEE-CTTC---CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCccEEEecCCc-Cccc-chhh---ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 9999999999987 7754 3333 77899999999999998447788888888888888863
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=5.8e-18 Score=171.83 Aligned_cols=195 Identities=21% Similarity=0.216 Sum_probs=160.1
Q ss_pred ccCcCCeeecCCCCCchhhHHhh--hcCCCCcEEEeCCCccCCccccccccc-----CCCcEEEcccccceeee----cc
Q 005004 6 LLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQEIPINH-----DQLRRLEITKCRVMRVS----IR 74 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~----~~ 74 (720)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++..++ +.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68999999999999998888876 8999999999999999765 7777777 89999999999998776 36
Q ss_pred CCCccEEeccCcchH------HHH--hcCCCceEEeeccccCcch-hhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHH
Q 005004 75 CPQLEHLSLKRSNMA------QAV--LNCPLLHLLDIASCHKLSD-AAIR-LAATSCPQLESLDMSNCSCVSDESLREIA 144 (720)
Q Consensus 75 ~~~L~~L~l~~~~~~------~~~--~~l~~L~~L~l~~~~~l~~-~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 144 (720)
+++|++|++++|.+. ..+ .++++|++|++++|. ++. ..++ ..+..+++|++|++++|. +.+..+....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh
Confidence 899999999999854 233 788999999999995 652 1233 445788999999999997 6554422223
Q ss_pred HhcCccceeeccCCC--CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc
Q 005004 145 LSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 208 (720)
Q Consensus 145 ~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 208 (720)
..+++|++|++++|. .+|..+. ++|++|++++ +.+++. +. +..+++|++|++++|.+.+
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 357899999999998 7777666 8999999999 588776 33 8889999999999987653
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=5.4e-16 Score=170.37 Aligned_cols=98 Identities=24% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEE
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 490 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 490 (720)
++|+.|++++| .++. ++. .+++|+.|++++|.+.... ..+++|+.|++++|.++.+|. .+++|+.|
T Consensus 201 ~~L~~L~L~~N-~l~~--l~~---~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L 266 (622)
T 3g06_A 201 SELYKLWAYNN-RLTS--LPA---LPSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNRLTSLPM---LPSGLLSL 266 (622)
T ss_dssp TTCCEEECCSS-CCSS--CCC---CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred chhhEEECcCC-cccc--cCC---CCCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCCCCcCCc---ccccCcEE
Confidence 45556666655 3332 221 2355666666655544321 334556666666666555554 44556666
Q ss_pred EcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch
Q 005004 491 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 491 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~ 527 (720)
++++|. ++.+ +..+ ..+++|+.|++++|.+++
T Consensus 267 ~Ls~N~-L~~l-p~~l---~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 267 SVYRNQ-LTRL-PESL---IHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp ECCSSC-CCSC-CGGG---GGSCTTCEEECCSCCCCH
T ss_pred eCCCCC-CCcC-CHHH---hhccccCEEEecCCCCCC
Confidence 666554 4432 2222 455556666666666554
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=6.6e-17 Score=167.75 Aligned_cols=196 Identities=17% Similarity=0.157 Sum_probs=147.5
Q ss_pred cCcCCeeecCCCCCchhhH----HhhhcCC-CCcEEEeCCCccCCccccccccc-----CCCcEEEcccccceeee----
Q 005004 7 LRNLEALTLGRGQLGDAFF----HALADCS-MLKSLNVNDATLGNGVQEIPINH-----DQLRRLEITKCRVMRVS---- 72 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~---- 72 (720)
.++|+.|++++|.+++..+ ++|..++ +|++|++++|.+.+..+..+..+ ++|++|++++|++....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999998877 7888999 99999999999977656666664 89999999999987543
Q ss_pred ----ccC-CCccEEeccCcchH--------HHHhc-CCCceEEeeccccCcchh---hHHHHhhcCC-CCCEEEecCCCC
Q 005004 73 ----IRC-PQLEHLSLKRSNMA--------QAVLN-CPLLHLLDIASCHKLSDA---AIRLAATSCP-QLESLDMSNCSC 134 (720)
Q Consensus 73 ----~~~-~~L~~L~l~~~~~~--------~~~~~-l~~L~~L~l~~~~~l~~~---~l~~~~~~l~-~L~~L~l~~~~~ 134 (720)
..+ ++|++|++++|.+. ..+.. .++|++|++++|. +++. .++..+..++ +|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 178 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN- 178 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-
Confidence 133 89999999999887 22344 4699999999985 6643 3455666666 99999999997
Q ss_pred CchhhHHHHHH---hc-CccceeeccCCC--C-----Ccccccc-CCcCcEEeccCCCCCchhhHHHh----hccccccE
Q 005004 135 VSDESLREIAL---SC-ANLRILNSSYCP--N-----ISLESVR-LPMLTVLQLHSCEGITSASMAAI----SHSYMLEV 198 (720)
Q Consensus 135 l~~~~~~~~~~---~l-~~L~~L~l~~~~--~-----~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~ 198 (720)
+++..+..++. .+ ++|++|++++|. . ++..+.. .++|++|++++ +.+++..+..+ ..+++|++
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHHHhcCCCccE
Confidence 77666655542 34 599999999986 2 3334444 34788888888 46766554333 34577888
Q ss_pred EeccCCc
Q 005004 199 LELDNCN 205 (720)
Q Consensus 199 L~l~~~~ 205 (720)
|++++|.
T Consensus 258 L~L~~n~ 264 (362)
T 3goz_A 258 VYLDYDI 264 (362)
T ss_dssp EEEEHHH
T ss_pred EEeccCC
Confidence 8887775
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.2e-16 Score=161.60 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=140.3
Q ss_pred ccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEE
Q 005004 4 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHL 81 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L 81 (720)
+..+++|+.|++++|.++.. + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|++..++ ..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence 45688899999999988763 3 68889999999999998854 444 788899999999999887765 357888888
Q ss_pred eccCcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 82 SLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 82 ~l~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
++++|.+. ..+..+++|++|++++|. ++ .++. +..+++|++|++++|. +.+... + ..+++|+.|++++|.
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~--~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l-~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQ-IT--NISP-LAGLTNLQYLSIGNAQ-VSDLTP--L-ANLSKLTTLKADDNK 184 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSC-CC--CCGG-GGGCTTCCEEECCSSC-CCCCGG--G-TTCTTCCEEECCSSC
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCc-cC--cCcc-ccCCCCccEEEccCCc-CCCChh--h-cCCCCCCEEECCCCc
Confidence 88888776 457788888888888875 55 2332 7778888888888886 554322 3 377888888888876
Q ss_pred --CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccc
Q 005004 160 --NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 207 (720)
Q Consensus 160 --~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (720)
.++. +..+++|++|++++ +.+++.. .+..+++|++|++++|.+.
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~-N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKN-NQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTT-SCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh-hcCCCCCCEEEccC-CccCccc--cccCCCCCCEEEccCCeee
Confidence 3333 66778888888887 3666554 3677788888888777653
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4e-17 Score=158.78 Aligned_cols=196 Identities=15% Similarity=0.118 Sum_probs=118.8
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCc-cCCcccccccccCCCcEEEccc-ccceeeeccCCCccEEeccCc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITK-CRVMRVSIRCPQLEHLSLKRS 86 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~L~~L~l~~~ 86 (720)
+++.|++++|.++++.+.+|..+++|++|++++|. +....+..+.++++|++|++++ |.+..++.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~------------- 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP------------- 98 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-------------
Confidence 56666666666666656566666666666666665 4332333555566666666665 55554431
Q ss_pred chHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCC---EEEecCCCCCchhhHHHHHHhcCccc-eeeccCCC--C
Q 005004 87 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE---SLDMSNCSCVSDESLREIALSCANLR-ILNSSYCP--N 160 (720)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~l~~L~-~L~l~~~~--~ 160 (720)
..+.++++|++|++++|. ++ .+|. +..+++|+ +|++++|..+.......+. .+++|+ .|++++|. .
T Consensus 99 ---~~f~~l~~L~~L~l~~n~-l~--~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 99 ---DALKELPLLKFLGIFNTG-LK--MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp ---TSEECCTTCCEEEEEEEC-CC--SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT-TTBSSEEEEECCSCCCCE
T ss_pred ---HHhCCCCCCCEEeCCCCC-Cc--cccc-cccccccccccEEECCCCcchhhcCccccc-chhcceeEEEcCCCCCcc
Confidence 234556666666666664 44 2443 55666666 7777777224433333333 677777 77777765 4
Q ss_pred CccccccCCcCcEEeccCCCCCchhhHHHhhcc-ccccEEeccCCccccccccccccccceecccc
Q 005004 161 ISLESVRLPMLTVLQLHSCEGITSASMAAISHS-YMLEVLELDNCNLLTSVSLELPRLQNIRLVHC 225 (720)
Q Consensus 161 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~ 225 (720)
+|......++|+.|+++++..++...+..+..+ ++|++|++++|.+....+..+++++.|++.++
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 555544457788888887424776666777777 88888888887765433334556666655443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=4.4e-16 Score=154.37 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=146.8
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEecc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 84 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~ 84 (720)
+.+.++++++.++. +|..+ .+++++|++++|.+....+..+.++++|++|++++|.+..++ .++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57789999988875 45444 267999999999886655567888999999999999988776 357889999999
Q ss_pred CcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-
Q 005004 85 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP- 159 (720)
Q Consensus 85 ~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~- 159 (720)
+|.+. ..+..+++|++|++++|. ++. ..+..+..+++|++|++++|. +.......+. .+++|+.|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQ-LKS-LPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFD-KLTSLKELRLYNNQL 169 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCc-cCe-eCHHHhCcCcCCCEEECCCCc-CCccCHhHcc-CCcccceeEecCCcC
Confidence 88876 456788899999999885 552 223557888999999999987 5543333333 78899999998886
Q ss_pred -CCcc-ccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc
Q 005004 160 -NISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 208 (720)
Q Consensus 160 -~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 208 (720)
.++. .+.++++|++|++++ +.++...+..+..+++|+.|++++|++..
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 4554 366788999999988 47777766677888899999998886543
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=2.7e-16 Score=156.07 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=86.1
Q ss_pred ccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCcc
Q 005004 4 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLE 79 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~ 79 (720)
+..+++|+.|+++++.++. ...++.+++|++|++++|.+.+ ++ .+..+++|++|++++|.+..++ .++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455666677777666653 2346666777777777766643 32 4556666777777666666544 2355556
Q ss_pred EEeccCcchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeec
Q 005004 80 HLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNS 155 (720)
Q Consensus 80 ~L~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 155 (720)
+|++++|.+. ..+.++++|++|++++|. ++. ..+..+..+++|++|++++|. +++..+..+. .+++|+.|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~L 188 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQS-LPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFD-KLTQLKDLRL 188 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCc-cCHHHhccCccCCEEECCCCC-cCccCHHHhc-CCccCCEEEC
Confidence 6666555554 224455555555555553 331 112234455555555555554 3322221122 4455555555
Q ss_pred cCCC--CCcc-ccccCCcCcEEeccC
Q 005004 156 SYCP--NISL-ESVRLPMLTVLQLHS 178 (720)
Q Consensus 156 ~~~~--~~~~-~~~~~~~L~~L~l~~ 178 (720)
++|. .++. .+..+++|+.|++++
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccC
Confidence 5544 2222 234444555555544
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=160.84 Aligned_cols=213 Identities=21% Similarity=0.267 Sum_probs=157.8
Q ss_pred ccCcCCeeecCCCCCchhhHH---hhhcCCCCcEEEeCCCccCCcccccc--cccCCCcEEEcccccceeee--------
Q 005004 6 LLRNLEALTLGRGQLGDAFFH---ALADCSMLKSLNVNDATLGNGVQEIP--INHDQLRRLEITKCRVMRVS-------- 72 (720)
Q Consensus 6 ~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~-------- 72 (720)
+..+++.+++.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 344577888998888754332 23356789999999999988888877 88999999999999987521
Q ss_pred ccCCCccEEeccCcchH----HHHhcCCCceEEeeccccCcchhhHHHH--hhcCCCCCEEEecCCCCCch--hhHHHHH
Q 005004 73 IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLA--ATSCPQLESLDMSNCSCVSD--ESLREIA 144 (720)
Q Consensus 73 ~~~~~L~~L~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~--~~~l~~L~~L~l~~~~~l~~--~~~~~~~ 144 (720)
..+++|++|++++|.+. ..+.++++|++|++++|.......++.. +..+++|++|++++|. ++. ..+..+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 24899999999999886 5667899999999999963332334322 3688999999999997 652 2333345
Q ss_pred HhcCccceeeccCCC--C-CccccccC---CcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc-ccccccccc
Q 005004 145 LSCANLRILNSSYCP--N-ISLESVRL---PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-SVSLELPRL 217 (720)
Q Consensus 145 ~~l~~L~~L~l~~~~--~-~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~L 217 (720)
..+++|++|++++|. . .|..++.+ ++|++|++++ +.++.. +..+ .++|++|++++|.+.+ ..+..+++|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L 296 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQV-PKGL--PAKLRVLDLSSNRLNRAPQPDELPEV 296 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSC-CSCC--CSCCSCEECCSCCCCSCCCTTSCCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCch-hhhh--cCCCCEEECCCCcCCCCchhhhCCCc
Confidence 588999999999997 3 36666666 6999999999 477743 4334 3799999999998775 233344555
Q ss_pred cceecc
Q 005004 218 QNIRLV 223 (720)
Q Consensus 218 ~~l~~~ 223 (720)
+.+++.
T Consensus 297 ~~L~L~ 302 (310)
T 4glp_A 297 DNLTLD 302 (310)
T ss_dssp SCEECS
T ss_pred cEEECc
Confidence 555443
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=4.4e-16 Score=155.66 Aligned_cols=195 Identities=15% Similarity=0.122 Sum_probs=151.6
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccE
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEH 80 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~ 80 (720)
.++++++++.++++++.++.+ |..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+..++ ..+++|++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 477899999999999999854 4444 378999999999997777788999999999999999998776 46899999
Q ss_pred EeccCcchH---HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeecc
Q 005004 81 LSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 156 (720)
Q Consensus 81 L~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 156 (720)
|++++|.+. ..+..+++|++|++++|. ++ .++ ..+..+++|++|++++|. +... +...+..+++|+.|+++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~--~l~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LT--SLPLGALRGLGELQELYLKGNE-LKTL-PPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC-CC--CCCSSTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc-Cc--ccCHHHHcCCCCCCEEECCCCC-CCcc-ChhhcccccCCCEEECC
Confidence 999999876 446778899999999885 65 333 567888999999999987 5533 33333378888999998
Q ss_pred CCC--CCccc-cccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccc
Q 005004 157 YCP--NISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 207 (720)
Q Consensus 157 ~~~--~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (720)
+|. .++.. +.++++|+.|++++ +.++. .+..+....+|+.+++++|++.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQE-NSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCS-SCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCC-CcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 887 55554 45688888888888 46663 3445556678888888887653
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=155.38 Aligned_cols=216 Identities=18% Similarity=0.166 Sum_probs=145.3
Q ss_pred CCCCcEEEeCCCccCCc-cccc--ccccCCCcEEEcccccceeee------ccCCCccEEeccCcchH--------HHHh
Q 005004 31 CSMLKSLNVNDATLGNG-VQEI--PINHDQLRRLEITKCRVMRVS------IRCPQLEHLSLKRSNMA--------QAVL 93 (720)
Q Consensus 31 ~~~L~~L~l~~~~l~~~-~~~~--~~~l~~L~~L~l~~~~~~~~~------~~~~~L~~L~l~~~~~~--------~~~~ 93 (720)
...++.+.+.++.+... +... ...+++|++|++++|.+.... ..+++|++|++++|.+. ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34567888887766421 1111 123467899999988876432 45788999999888765 2334
Q ss_pred cCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchh-hHH--HHHHhcCccceeeccCCC--CCccc----
Q 005004 94 NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE-SLR--EIALSCANLRILNSSYCP--NISLE---- 164 (720)
Q Consensus 94 ~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~--~~~~~l~~L~~L~l~~~~--~~~~~---- 164 (720)
.+++|++|++++|. ++ ...+..++.+++|++|++++|. +... ... .....+++|++|++++|. .++..
T Consensus 143 ~~~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SP-AFSCEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCS-SC-CCCTTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cc-hhhHHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 68889999998885 54 2334667788899999999887 3322 111 111367889999998886 22332
Q ss_pred cccCCcCcEEeccCCCCCchhhHHHhhcc---ccccEEeccCCccccccccccccccceecccccccccchhhhccccee
Q 005004 165 SVRLPMLTVLQLHSCEGITSASMAAISHS---YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 241 (720)
Q Consensus 165 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l 241 (720)
+..+++|++|++++ +.+++..|..+..+ ++|++|++++|.+. .+|..++ ++|+.++++.+.++.+
T Consensus 220 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~----------~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 220 AAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP----------AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp HHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC----------SCCSCEECCSCCCCSC
T ss_pred HhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc----------CCCCEEECCCCcCCCC
Confidence 35678899999988 57777666666665 68999999888766 4554331 3444555555656654
Q ss_pred -eccCCCcccEEEeccCcccc
Q 005004 242 -MVSNCAALHRINITSNSLQK 261 (720)
Q Consensus 242 -~~~~~~~L~~l~l~~~~~~~ 261 (720)
.+..++.|+.+++++|.+++
T Consensus 288 ~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTSCCCCSCEECSSTTTSC
T ss_pred chhhhCCCccEEECcCCCCCC
Confidence 46777888999999888864
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=2.8e-15 Score=149.20 Aligned_cols=88 Identities=22% Similarity=0.157 Sum_probs=35.7
Q ss_pred ccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCC----eeecCCcccCChhHHHh
Q 005004 407 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLT----MLDLSYTFLTNLEPVFE 482 (720)
Q Consensus 407 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~l~~~~~ 482 (720)
+..+++|+.|++++| .+....++..+..+++|++|++++|.+.... ...+..+++|+ .|++++|.+.+++....
T Consensus 120 ~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 120 IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 344445555555544 2332223334444444444444444433321 12222222222 44444444444433333
Q ss_pred ccccccEEEcCCCC
Q 005004 483 SCLQLKVLKLQACK 496 (720)
Q Consensus 483 ~~~~L~~L~l~~~~ 496 (720)
...+|+.|++++|.
T Consensus 198 ~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 198 KEIRLKELALDTNQ 211 (276)
T ss_dssp CSCCEEEEECCSSC
T ss_pred CCCcccEEECCCCc
Confidence 33344444444443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=3.3e-15 Score=150.90 Aligned_cols=203 Identities=17% Similarity=0.249 Sum_probs=139.1
Q ss_pred eeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEEeccCcchH
Q 005004 12 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMA 89 (720)
Q Consensus 12 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~~~ 89 (720)
.+.+..+.++... .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+..++ ..+++|++|++++|.+.
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC
Confidence 3345555555432 3446889999999999884 455 4778999999999999987765 46788888888888776
Q ss_pred --HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCcccc
Q 005004 90 --QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLES 165 (720)
Q Consensus 90 --~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~ 165 (720)
..+..+++|++|++++|. ++. ++ .+..+++|++|++++|. +.+... +. .+++|+.|++++|. .++. +
T Consensus 99 ~~~~~~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~-~l~~L~~L~l~~n~l~~~~~-l 169 (308)
T 1h6u_A 99 NVSAIAGLQSIKTLDLTSTQ-ITD--VT-PLAGLSNLQVLYLDLNQ-ITNISP--LA-GLTNLQYLSIGNAQVSDLTP-L 169 (308)
T ss_dssp CCGGGTTCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECCSSC-CCCCGG--GG-GCTTCCEEECCSSCCCCCGG-G
T ss_pred CchhhcCCCCCCEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCc-cCcCcc--cc-CCCCccEEEccCCcCCCChh-h
Confidence 567778888888888875 552 33 26777888888888876 443322 33 67778888887776 3333 6
Q ss_pred ccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhcccceeeccC
Q 005004 166 VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSN 245 (720)
Q Consensus 166 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l~~~~ 245 (720)
..+++|+.|++++ +.+++..+ +..+++|++|++++|.+.+.. .+..
T Consensus 170 ~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-------------------------------~l~~ 215 (308)
T 1h6u_A 170 ANLSKLTTLKADD-NKISDISP--LASLPNLIEVHLKNNQISDVS-------------------------------PLAN 215 (308)
T ss_dssp TTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECTTSCCCBCG-------------------------------GGTT
T ss_pred cCCCCCCEEECCC-CccCcChh--hcCCCCCCEEEccCCccCccc-------------------------------cccC
Confidence 6777777777777 35555443 666777777777776543221 2455
Q ss_pred CCcccEEEeccCcccc
Q 005004 246 CAALHRINITSNSLQK 261 (720)
Q Consensus 246 ~~~L~~l~l~~~~~~~ 261 (720)
+++|+.+++++|.+++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 6677777777777655
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=2.2e-16 Score=156.62 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=98.5
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEEeccC
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKR 85 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~ 85 (720)
+++..+++.++.+... ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+..++ ..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 3444566666655543 34556888899999888874 343 3677888888888888877653 2456666666666
Q ss_pred cchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--
Q 005004 86 SNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 159 (720)
Q Consensus 86 ~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-- 159 (720)
|.+. ..+.++++|++|++++|. ++. ..+..+..+++|++|++++|. +....+..+. .+++|+.|++++|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQ-LQS-LPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFD-KLTNLTELDLSYNQLQ 170 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCc-CCc-cCHHHhccCCCCCEEECCCCc-cCccCHHHhc-cCccCCEEECCCCCcC
Confidence 6554 224555556666665553 331 112234555555555555554 3322221122 44455555555443
Q ss_pred CCcc-ccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCC
Q 005004 160 NISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 204 (720)
Q Consensus 160 ~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 204 (720)
.++. .+..+++|++|++++ +.+++..+..+..+++|++|++++|
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCHHHhcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCC
Confidence 2222 123444444444444 2344333333344444444444444
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.5e-15 Score=150.62 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=140.9
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
++++.|++++|.++.+.+.+|..+++|++|++++|.+....+..+.++++|++|++++|++..++ .++++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 56999999999999888889999999999999999997555556688999999999999998876 46899999999
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 158 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 158 (720)
++|.+. ..+..+++|++|++++|. ++ .++ ..+..+++|++|++++|. +.......+. .+++|+.|++++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N 191 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQ--SLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFD-KLTELKTLKLDNN 191 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSS
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCc-CC--ccCHhHccCCcccceeEecCCc-CcEeChhHhc-cCCCcCEEECCCC
Confidence 999887 457899999999999985 66 344 457889999999999997 6544443344 7899999999999
Q ss_pred C--CCcc-ccccCCcCcEEeccCC
Q 005004 159 P--NISL-ESVRLPMLTVLQLHSC 179 (720)
Q Consensus 159 ~--~~~~-~~~~~~~L~~L~l~~~ 179 (720)
. .++. .+..+++|+.|+++++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHHHhccccCCCEEEecCC
Confidence 7 5555 3677999999999984
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.1e-14 Score=145.61 Aligned_cols=201 Identities=22% Similarity=0.146 Sum_probs=119.8
Q ss_pred ccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEeccCCCCcee
Q 005004 243 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 322 (720)
Q Consensus 243 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 322 (720)
+.+++++++++++++.++.+... ..++++.|++++ +.+++..+..+ ..+++|++|++++|. ++.+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----------~~~~l~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----------LPKDTTILHLSE-NLLYTFSLATL---MPYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----------CCTTCCEEECTT-SCCSEEEGGGG---TTCTTCCEEECTTSC-CCEE
T ss_pred ccccCCccEEECCCCCCCcCCCC----------CCCCCCEEEcCC-CcCCccCHHHh---hcCCCCCEEECCCCc-cCcc
Confidence 56677788888888877654211 125788888888 57777766666 677888888888875 3322
Q ss_pred ccccCCceeEeecCCCccccccccCCcccEEeccCCCccccccccccccceeccCCCCCCcccccccceeeeeeecCccc
Q 005004 323 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 402 (720)
Q Consensus 323 ~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~~~~~~~L~~l~l~~~~l~~l~~~~~~~ 402 (720)
+. ...+++|+.+++++|.+ ..
T Consensus 71 ~~---------------------------------------------------~~~l~~L~~L~Ls~N~l--------~~ 91 (290)
T 1p9a_G 71 QV---------------------------------------------------DGTLPVLGTLDLSHNQL--------QS 91 (290)
T ss_dssp EC---------------------------------------------------CSCCTTCCEEECCSSCC--------SS
T ss_pred cC---------------------------------------------------CCCCCcCCEEECCCCcC--------Cc
Confidence 10 12344455555555554 44
Q ss_pred ccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HH
Q 005004 403 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VF 481 (720)
Q Consensus 403 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~ 481 (720)
+|..+..+++|+.|++++| .++.. .+..+..+++|++|++++|.+.... ...+..+++|+.|++++|+++.+|. .|
T Consensus 92 l~~~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp CCCCTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred CchhhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHh
Confidence 5555556666777777766 33321 2234556666666666666655432 3345566667777777776666655 44
Q ss_pred hccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCcc
Q 005004 482 ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 525 (720)
Q Consensus 482 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i 525 (720)
..+++|+.|++++|+ ++.+ +..+ ...++|+.+++++|.+
T Consensus 169 ~~l~~L~~L~L~~N~-l~~i-p~~~---~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 169 NGLENLDTLLLQENS-LYTI-PKGF---FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCTTCCEEECCSSC-CCCC-CTTT---TTTCCCSEEECCSCCB
T ss_pred cCcCCCCEEECCCCc-CCcc-Chhh---cccccCCeEEeCCCCc
Confidence 566666677666655 5433 2222 3445666666666544
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=2.5e-15 Score=146.05 Aligned_cols=155 Identities=19% Similarity=0.157 Sum_probs=101.5
Q ss_pred cCCCCCCccccccc-ceeeeeeecCccccc-ccccCCCCccEEeccCCCCCcchhhhhhhccCCCcc---EEeecCC-CC
Q 005004 376 LGICPKLSTLGIEA-LHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIE---SLILMSC-QS 449 (720)
Q Consensus 376 ~~~~~~L~~l~l~~-~~l~~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~---~L~l~~~-~~ 449 (720)
+.++++|+.+++++ |.+ ..++ ..+..+++|+.|++++| .++. ++. +..+++|+ +|++++| .+
T Consensus 76 f~~l~~L~~L~l~~~n~l--------~~i~~~~f~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNL--------TYIDPDALKELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYM 143 (239)
T ss_dssp EESCTTCCEEEEEEETTC--------CEECTTSEECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTC
T ss_pred cCCCcCCcEEECCCCCCe--------eEcCHHHhCCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcch
Confidence 34455555555555 554 2222 34556777777777776 3443 443 55666666 8888887 44
Q ss_pred CCchhhHHhhcCCCCC-eeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCC-CCcceeecCCCccch
Q 005004 450 IGPDGLYSLRSLQNLT-MLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSL-PALQELDLSYGTLCQ 527 (720)
Q Consensus 450 ~~~~~~~~~~~~~~L~-~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~~~i~~ 527 (720)
.. .....+..+++|+ +|++++|.++.+|......++|+.|++++|+.++.+....+ ..+ ++|+.|++++|+++.
T Consensus 144 ~~-i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 144 TS-IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF---GGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CE-ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTT---TTCSBCCSEEECTTCCCCC
T ss_pred hh-cCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh---hccccCCcEEECCCCcccc
Confidence 33 2244577888888 88888888887776433338899999988855776544444 667 889999999988875
Q ss_pred HHHHHHHhhCCCCcEEeccCccC
Q 005004 528 SAIEELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 528 ~~~~~~l~~~~~L~~L~l~~~~~ 550 (720)
++.. .+++|+.|+++++..
T Consensus 220 --l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 220 --LPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp --CCCT--TCTTCSEEECTTC--
T ss_pred --CChh--HhccCceeeccCccC
Confidence 2222 578899998887653
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=4.4e-15 Score=153.13 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=131.2
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEccccccee-ee----ccCCCccE-Eecc
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VS----IRCPQLEH-LSLK 84 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~----~~~~~L~~-L~l~ 84 (720)
++++-++++++. +|..+ .+++++|+|++|.+...-+.++.++++|++|++++|++.. ++ .+++++.. +.++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 345555555552 34333 2456666666666643222345666666666666666532 32 23455443 3344
Q ss_pred CcchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 85 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 85 ~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
.|.+. ..+.++++|++|++++|. ++ .++ ..+....++..+++.++..+.......+......++.|++++|.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~--~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG-IK--HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC-CS--SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred CCcccccCchhhhhccccccccccccc-cc--cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 45443 456777888888888774 44 222 22334456677777765545433333333223468888998887
Q ss_pred --CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccc
Q 005004 160 --NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFA 229 (720)
Q Consensus 160 --~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~ 229 (720)
.++...+...+++++++.+++.++......+..+++|++|++++|.+..-.+..+..|+.|...++.+++
T Consensus 166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237 (350)
T ss_dssp CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCC
T ss_pred ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcC
Confidence 6777777788899999987677887777788899999999999997654433346667777665554444
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=3e-14 Score=142.44 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=102.8
Q ss_pred cccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEecc
Q 005004 5 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK 84 (720)
Q Consensus 5 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~ 84 (720)
+.+++|+.|++++|.++.. ..+..+++|++|++++|.+.+ +++ +..+++|++|++++|.+..+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~------------- 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDL------------- 105 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCG-------------
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCC-------------
Confidence 3455566666666655543 235556666666666665533 222 45555555555555555443
Q ss_pred CcchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCc
Q 005004 85 RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS 162 (720)
Q Consensus 85 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~ 162 (720)
..+..+++|++|++++|. ++. + ..+..+++|++|++++|. +.+. ..+. .+++|+.|++++|. .++
T Consensus 106 -----~~l~~l~~L~~L~L~~n~-i~~--~-~~l~~l~~L~~L~l~~n~-l~~~--~~l~-~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 106 -----SSLKDLKKLKSLSLEHNG-ISD--I-NGLVHLPQLESLYLGNNK-ITDI--TVLS-RLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp -----GGGTTCTTCCEEECTTSC-CCC--C-GGGGGCTTCCEEECCSSC-CCCC--GGGG-GCTTCSEEECCSSCCCCCG
T ss_pred -----hhhccCCCCCEEECCCCc-CCC--C-hhhcCCCCCCEEEccCCc-CCcc--hhhc-cCCCCCEEEccCCccccch
Confidence 335666666666666664 442 2 345666777777777765 4432 2333 66777777777765 333
Q ss_pred cccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCcccc
Q 005004 163 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 208 (720)
Q Consensus 163 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 208 (720)
. +..+++|+.|++++ +.+++.. .+..+++|+.|++++|.+..
T Consensus 173 ~-l~~l~~L~~L~L~~-N~i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSK-NHISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GTTCTTCCEEECCS-SCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred h-hcCCCccCEEECCC-CcCCCCh--hhccCCCCCEEECcCCcccC
Confidence 3 66777888888877 4666542 47788899999998886554
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.2e-14 Score=142.33 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=115.3
Q ss_pred CcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEec
Q 005004 8 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 83 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l 83 (720)
...+.++++++.++. +|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+..++ .++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 345667777777663 333332 56777777777776656666777777777777777776654 24677777777
Q ss_pred cCcchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCC
Q 005004 84 KRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 158 (720)
Q Consensus 84 ~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 158 (720)
++|.+. ..+..+++|++|++++|. ++ .++ ..+..+++|++|++++|. +.......+. .+++|+.|++++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~--~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N 165 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ-LK--SLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFD-KLTNLQTLSLSTN 165 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCc-CC--CcChhHhccCCcccEEECcCCc-CCccCHHHcC-cCcCCCEEECCCC
Confidence 777765 456778888888888874 55 333 345778888888888886 5543333343 7788888888888
Q ss_pred C--CCcc-ccccCCcCcEEeccCCCCCch
Q 005004 159 P--NISL-ESVRLPMLTVLQLHSCEGITS 184 (720)
Q Consensus 159 ~--~~~~-~~~~~~~L~~L~l~~~~~l~~ 184 (720)
. .++. .+..+++|+.|++++ +.+..
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~-N~~~c 193 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFG-NQFDC 193 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCS-CCBCT
T ss_pred cCCccCHHHHhCCCCCCEEEeeC-CceeC
Confidence 6 4444 567788899999988 45544
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=4.8e-14 Score=141.00 Aligned_cols=187 Identities=16% Similarity=0.134 Sum_probs=130.2
Q ss_pred eeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcchHHH
Q 005004 12 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQA 91 (720)
Q Consensus 12 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 91 (720)
.+.+..+.+++.. .+..+++|++|++++|.+. .++. +..+++|++|++++|++..++ .
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-----------------~- 85 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIK-----------------P- 85 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCCCG-----------------G-
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh-HhcCCCCCEEEccCCccCCCc-----------------c-
Confidence 3445555444322 2345677777777777763 3333 556677777777766665442 2
Q ss_pred HhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-CCccccccCCc
Q 005004 92 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-NISLESVRLPM 170 (720)
Q Consensus 92 ~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~ 170 (720)
+.++++|++|++++|. ++ .++ .+..+++|++|++++|. +.+. ..+. .+++|+.|++++|. .-...+..+++
T Consensus 86 l~~l~~L~~L~l~~n~-l~--~~~-~l~~l~~L~~L~L~~n~-i~~~--~~l~-~l~~L~~L~l~~n~l~~~~~l~~l~~ 157 (291)
T 1h6t_A 86 LANLKNLGWLFLDENK-VK--DLS-SLKDLKKLKSLSLEHNG-ISDI--NGLV-HLPQLESLYLGNNKITDITVLSRLTK 157 (291)
T ss_dssp GTTCTTCCEEECCSSC-CC--CGG-GGTTCTTCCEEECTTSC-CCCC--GGGG-GCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred cccCCCCCEEECCCCc-CC--CCh-hhccCCCCCEEECCCCc-CCCC--hhhc-CCCCCCEEEccCCcCCcchhhccCCC
Confidence 6788999999999985 66 333 48899999999999997 6543 3444 89999999999997 22367888999
Q ss_pred CcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhccccee
Q 005004 171 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 241 (720)
Q Consensus 171 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l 241 (720)
|+.|+++++ .+++..+ +..+++|++|++++|.+... +. +..+++|+.+++.++.+...
T Consensus 158 L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~---------l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 158 LDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL-RA---------LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC-GG---------GTTCTTCSEEEEEEEEEECC
T ss_pred CCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCCC-hh---------hccCCCCCEEECcCCcccCC
Confidence 999999994 7777655 88999999999999976542 21 23344455555555555443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=5.7e-14 Score=154.18 Aligned_cols=172 Identities=21% Similarity=0.233 Sum_probs=93.7
Q ss_pred ccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEec
Q 005004 4 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 83 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l 83 (720)
+..+++|+.|++++|.+... ..|..+++|++|+|++|.+.+ +++ +..+++|++|++++|.+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~----------- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLS----------- 103 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCT-----------
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCCh-----------
Confidence 34566777777777776653 256677777777777777643 333 566777777777777666543
Q ss_pred cCcchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CC
Q 005004 84 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NI 161 (720)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~ 161 (720)
.+..+++|+.|++++|. ++. + ..+..+++|+.|++++|. +.+. ..+. .+++|+.|++++|. .+
T Consensus 104 -------~l~~l~~L~~L~Ls~N~-l~~--l-~~l~~l~~L~~L~Ls~N~-l~~l--~~l~-~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 104 -------SLKDLKKLKSLSLEHNG-ISD--I-NGLVHLPQLESLYLGNNK-ITDI--TVLS-RLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp -------TSTTCTTCCEEECTTSC-CCC--C-GGGGGCTTCSEEECCSSC-CCCC--GGGG-SCTTCSEEECCSSCCCCC
T ss_pred -------hhccCCCCCEEEecCCC-CCC--C-ccccCCCccCEEECCCCc-cCCc--hhhc-ccCCCCEEECcCCcCCCc
Confidence 23444444444444443 331 1 224445555555555554 3322 2222 44555555555554 22
Q ss_pred ccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccc
Q 005004 162 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 209 (720)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 209 (720)
++ +..+++|+.|+++++ .+++. ..+..+++|+.|++++|.+...
T Consensus 169 ~~-l~~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hh-hccCCCCCEEECcCC-CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 22 455556666666653 45443 3456666777777776665443
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=1.2e-13 Score=135.07 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=111.4
Q ss_pred CCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhh
Q 005004 380 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 459 (720)
Q Consensus 380 ~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 459 (720)
++++.+++++|.++ +..+..+.++++|++|++++| .+.. ..+..+..+++|++|++++|.+.... ...+.
T Consensus 35 ~~l~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-------TLSDATFRGLTKLTWLNLDYN-QLQT-LSAGVFDDLTELGTLGLANNQLASLP-LGVFD 104 (251)
T ss_dssp TTCCEEECTTSCCC-------CCCTTTTTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECTTSCCCCCC-TTTTT
T ss_pred CCCCEEEccCCCcC-------ccCHhHhcCcccCCEEECCCC-cCCc-cCHhHhccCCcCCEEECCCCcccccC-hhHhc
Confidence 45666777777663 333446777888888888887 4443 23344677888888888888776543 35567
Q ss_pred cCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCC
Q 005004 460 SLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 538 (720)
Q Consensus 460 ~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~ 538 (720)
.+++|++|++++|.+++++. .|..+++|+.|++++|. ++...+..+ ..+++|+.|++++|++.. ..+..+..++
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAF---DKLTNLQTLSLSTNQLQS-VPHGAFDRLG 179 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCT
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHc---CcCcCCCEEECCCCcCCc-cCHHHHhCCC
Confidence 78888888888888887766 46778888888888876 766544333 677888888888888875 4445667788
Q ss_pred CCcEEeccCccC
Q 005004 539 HLTHVSLNGCGN 550 (720)
Q Consensus 539 ~L~~L~l~~~~~ 550 (720)
+|+.|++++|+.
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 888888888763
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=8.4e-14 Score=131.98 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=77.7
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEe
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 82 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~ 82 (720)
.+++++|++++|.+++..+..|+.+++|++|++++|.+....+..+..+++|++|++++|++..++ .++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 346777777777777666666777777777777777775444445566777777777777776554 2456666666
Q ss_pred ccCcchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCC
Q 005004 83 LKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCS 133 (720)
Q Consensus 83 l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~ 133 (720)
+++|.+. ..+.++++|++|++++|. ++ .++ ..+..+++|++|++++|.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~--~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LK--SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CS--CCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCc-cc--eeCHHHhccCCCccEEEecCCC
Confidence 6666554 234556666666666653 43 222 234555666666666654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=1.3e-13 Score=151.35 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=132.0
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcch
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 88 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~ 88 (720)
++..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|++|+|++|++..++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~-l~~l~~L~~L~Ls~N~l~~~~---------------- 81 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIK---------------- 81 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT-GGGCTTCCEEECTTSCCCCCG----------------
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH-HccCCCCCEEEeeCCCCCCCh----------------
Confidence 34445555555554332 345677777777777663 3443 566667777777666665443
Q ss_pred HHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-CCcccccc
Q 005004 89 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-NISLESVR 167 (720)
Q Consensus 89 ~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~ 167 (720)
.+..+++|+.|+|++|. ++ .++ .+..+++|++|++++|. +.+. ..+. .+++|+.|++++|. .-...+..
T Consensus 82 --~l~~l~~L~~L~Ls~N~-l~--~l~-~l~~l~~L~~L~Ls~N~-l~~l--~~l~-~l~~L~~L~Ls~N~l~~l~~l~~ 151 (605)
T 1m9s_A 82 --PLTNLKNLGWLFLDENK-IK--DLS-SLKDLKKLKSLSLEHNG-ISDI--NGLV-HLPQLESLYLGNNKITDITVLSR 151 (605)
T ss_dssp --GGGGCTTCCEEECCSSC-CC--CCT-TSTTCTTCCEEECTTSC-CCCC--GGGG-GCTTCSEEECCSSCCCCCGGGGS
T ss_pred --hhccCCCCCEEECcCCC-CC--CCh-hhccCCCCCEEEecCCC-CCCC--cccc-CCCccCEEECCCCccCCchhhcc
Confidence 26788999999999985 66 333 67899999999999998 5542 3444 89999999999997 22267889
Q ss_pred CCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceecccccccccchhhhccccee
Q 005004 168 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 241 (720)
Q Consensus 168 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~~l~~~~l~~~~l~~l 241 (720)
+++|+.|+++++ .+.+..+ +..+++|++|++++|.+... + .+..+++|+.+++.++.+...
T Consensus 152 l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~---------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 152 LTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL-R---------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC-G---------GGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCC-h---------HHccCCCCCEEEccCCcCcCC
Confidence 999999999994 7877665 88999999999999976542 2 123344455555555555443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=4.8e-14 Score=152.85 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=139.8
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCC-CccEEeccCcc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP-QLEHLSLKRSN 87 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~L~~L~l~~~~ 87 (720)
+++.|++++|.+++ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+..++. +. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCc
Confidence 89999999999987 55544 478999999999985 676 447899999999999988776 44 89999999998
Q ss_pred hHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCcccc
Q 005004 88 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLES 165 (720)
Q Consensus 88 ~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~ 165 (720)
+......+++|+.|++++|. ++ .+|. .+++|++|++++|. ++. .+. + . ++|+.|++++|. .+|. +
T Consensus 132 l~~lp~~l~~L~~L~Ls~N~-l~--~lp~---~l~~L~~L~Ls~N~-L~~-lp~-l--~-~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 132 LTMLPELPALLEYINADNNQ-LT--MLPE---LPTSLEVLSVRNNQ-LTF-LPE-L--P-ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp CSCCCCCCTTCCEEECCSSC-CS--CCCC---CCTTCCEEECCSSC-CSC-CCC-C--C-TTCCEEECCSSCCSSCCC-C
T ss_pred CCCCCCcCccccEEeCCCCc-cC--cCCC---cCCCcCEEECCCCC-CCC-cch-h--h-CCCCEEECcCCCCCchhh-H
Confidence 86322267889999999985 66 3554 57889999999997 554 232 3 2 889999999987 6666 4
Q ss_pred ccCCcC-------cEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccc
Q 005004 166 VRLPML-------TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRL 217 (720)
Q Consensus 166 ~~~~~L-------~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L 217 (720)
.. +| +.|++++ +.++. .|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~-N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRE-NRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C----------CCEEEECCS-SCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCC-Cccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 43 66 9999998 47775 45566778999999999998888777655443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=4.1e-13 Score=125.86 Aligned_cols=140 Identities=18% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEEeccCcchH----HHHhcCCCceEEeec
Q 005004 31 CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIA 104 (720)
Q Consensus 31 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~~~----~~~~~l~~L~~L~l~ 104 (720)
+++|++|++++|.+. .+| .+..+++|++|++++|.+..++ ..+++|++|++++|.+. ..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 344444444444442 233 2334444444444444433322 23444444444444433 234556666667666
Q ss_pred cccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccccCCcCcEEeccC
Q 005004 105 SCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHS 178 (720)
Q Consensus 105 ~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~ 178 (720)
+|. +++ ..+..+..+++|++|++++|..+.+. + .+. .+++|+.|++++|. .++ .+..+++|++|++++
T Consensus 121 ~n~-i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~-~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 121 HSA-HDD-SILTKINTLPKVNSIDLSYNGAITDI-M-PLK-TLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp SSB-CBG-GGHHHHTTCSSCCEEECCSCTBCCCC-G-GGG-GCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred CCc-cCc-HhHHHHhhCCCCCEEEccCCCCcccc-H-hhc-CCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 664 442 23555666777777777776533322 1 233 66777777777765 333 566677777777776
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=2.8e-13 Score=133.16 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=81.6
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEEecc
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLK 84 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~ 84 (720)
+.++..++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|++..++ ..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 334444555555554332 3445555555555555542 233 3444555555555555554443 245555555555
Q ss_pred CcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--C
Q 005004 85 RSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--N 160 (720)
Q Consensus 85 ~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~ 160 (720)
+|.+. ..+.. ++|+.|++++|. ++. ++ .+..+++|++|++++|. +++. ..+. .+++|+.|++++|. .
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~-l~~--~~-~l~~l~~L~~L~Ls~N~-i~~~--~~l~-~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNE-LRD--TD-SLIHLKNLEILSIRNNK-LKSI--VMLG-FLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSC-CSB--SG-GGTTCTTCCEEECTTSC-CCBC--GGGG-GCTTCCEEECTTSCCCB
T ss_pred CCccCCcCcccc-CcccEEEccCCc-cCC--Ch-hhcCcccccEEECCCCc-CCCC--hHHc-cCCCCCEEECCCCcCcc
Confidence 55544 12222 556666666653 442 22 35566666666666665 4432 1222 56666666666665 2
Q ss_pred CccccccCCcCcEEeccC
Q 005004 161 ISLESVRLPMLTVLQLHS 178 (720)
Q Consensus 161 ~~~~~~~~~~L~~L~l~~ 178 (720)
+ ..+..+++|+.|++++
T Consensus 165 ~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp C-TTSTTCCCCCEEEEEE
T ss_pred h-HHhccCCCCCEEeCCC
Confidence 2 4455666666666666
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=4.2e-13 Score=125.78 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=117.5
Q ss_pred cCCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhh
Q 005004 376 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 455 (720)
Q Consensus 376 ~~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 455 (720)
...+++|+.++++++.+ ..++ .+..+++|+.|++++| .+.+ + ..+..+++|++|++++|.+.... +
T Consensus 40 ~~~l~~L~~L~l~~n~i--------~~l~-~l~~l~~L~~L~l~~n-~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~-~ 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV--------TDLT-GIEYAHNIKDLTINNI-HATN--Y-NPISGLSNLERLRIMGKDVTSDK-I 105 (197)
T ss_dssp HHHHHTCCEEEEESSCC--------SCCT-TGGGCTTCSEEEEESC-CCSC--C-GGGTTCTTCCEEEEECTTCBGGG-S
T ss_pred hhhcCCccEEeccCCCc--------cChH-HHhcCCCCCEEEccCC-CCCc--c-hhhhcCCCCCEEEeECCccCccc-C
Confidence 35567777788877776 4455 5778889999999988 4544 2 35678899999999998876533 5
Q ss_pred HHhhcCCCCCeeecCCcccCC-hhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHH
Q 005004 456 YSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 534 (720)
Q Consensus 456 ~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l 534 (720)
..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|..+++.. .+ ..+++|+.|++++|.+++ ++ .+
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l---~~l~~L~~L~l~~n~i~~--~~-~l 177 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PL---KTLPELKSLNIQFDGVHD--YR-GI 177 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GG---GGCSSCCEEECTTBCCCC--CT-TG
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hh---cCCCCCCEEECCCCCCcC--hH-Hh
Confidence 667888999999999999986 56688899999999999987566652 23 678999999999998876 22 57
Q ss_pred hhCCCCcEEeccCcc
Q 005004 535 AYCTHLTHVSLNGCG 549 (720)
Q Consensus 535 ~~~~~L~~L~l~~~~ 549 (720)
..+++|+.|++++|+
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 788999999999886
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=8.6e-13 Score=135.94 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=61.3
Q ss_pred CccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEEE
Q 005004 412 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 491 (720)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 491 (720)
.++.|++++| .++. ++.......+|+++.+.+++..+......|..+++|++|++++|+++.+|.. .+.+|+.|.
T Consensus 155 ~l~~L~L~~N-~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~ 229 (350)
T 4ay9_X 155 ESVILWLNKN-GIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLR 229 (350)
T ss_dssp SCEEEECCSS-CCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEE
T ss_pred hhhhhccccc-cccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhh
Confidence 4556666665 3433 3333334456666666654444443234567788888888888888877762 345566666
Q ss_pred cCCCCCCChhHHHHHHhcCCCCCcceeecCCC
Q 005004 492 LQACKYLTNTSLESLYKKGSLPALQELDLSYG 523 (720)
Q Consensus 492 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~ 523 (720)
+.++..++... .+..+++|+.+++.++
T Consensus 230 ~l~~~~l~~lP-----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLP-----TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCC-----CTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCC-----CchhCcChhhCcCCCC
Confidence 66655555331 2366778888887764
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=8.4e-15 Score=159.82 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=140.8
Q ss_pred ccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCc-------------cCCcccccccccCCCcEEE-cccccce
Q 005004 4 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-------------LGNGVQEIPINHDQLRRLE-ITKCRVM 69 (720)
Q Consensus 4 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~~~~~~l~~L~~L~-l~~~~~~ 69 (720)
+..+++|+.|++++|.++ .+|+.++.+++|+.|++++|. ..+..|..+..+++|++|+ ++.+.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 467889999999999886 679999999999999987764 3355666677777788777 5555443
Q ss_pred eeeccCCCccEEeccCcchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCc
Q 005004 70 RVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCAN 149 (720)
Q Consensus 70 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 149 (720)
+|+.+.+++|.+.... ...|+.|++++|. ++ .+|. ++.+++|++|++++|. ++ ..+..+. .+++
T Consensus 424 -------~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~-l~--~lp~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~-~l~~ 487 (567)
T 1dce_A 424 -------DLRSKFLLENSVLKME--YADVRVLHLAHKD-LT--VLCH-LEQLLLVTHLDLSHNR-LR-ALPPALA-ALRC 487 (567)
T ss_dssp -------HHHHHHHHHHHHHHHH--HTTCSEEECTTSC-CS--SCCC-GGGGTTCCEEECCSSC-CC-CCCGGGG-GCTT
T ss_pred -------hhhhhhhhcccccccC--ccCceEEEecCCC-CC--CCcC-ccccccCcEeecCccc-cc-ccchhhh-cCCC
Confidence 3445555555554221 1358888888884 66 4565 7888889999998887 55 4455555 8888
Q ss_pred cceeeccCCC--CCccccccCCcCcEEeccCCCCCchhh-HHHhhccccccEEeccCCcccccc
Q 005004 150 LRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSAS-MAAISHSYMLEVLELDNCNLLTSV 210 (720)
Q Consensus 150 L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~ 210 (720)
|+.|++++|. .+| .++.+++|+.|++++ +.+++.. |..+..+++|+.|++++|.+.+..
T Consensus 488 L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 488 LEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCEEECCCCCCCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 9999998887 666 788889999999988 5787776 888889999999999998766543
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.7e-12 Score=115.63 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=84.6
Q ss_pred cCcCCeeecCCCCCc-hhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccC
Q 005004 7 LRNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 85 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~ 85 (720)
.++++.|++++|.++ +..|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-------------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-------------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC--------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch--------------
Confidence 356666777766666 45555666666667777766666433 4455566666666666655431
Q ss_pred cchHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhH--HHHHHhcCccceeecc
Q 005004 86 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLRILNSS 156 (720)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~ 156 (720)
+...+.++++|++|++++|. ++....+..+..+++|++|++++|. +.+... ......+++|+.|+++
T Consensus 80 --~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 --LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 12556678888888888885 6643334678888899999998886 554332 2334478888888775
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=9.4e-13 Score=136.21 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=49.5
Q ss_pred CCeeecCCCCCchhhHHhhh-cCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEecc
Q 005004 10 LEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSLK 84 (720)
Q Consensus 10 L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~ 84 (720)
++.|+|++|.|++..+..|. .+++|++|+|++|.+....+..+..+++|++|++++|++..++. ++++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555555555554 55555555555555543333445555555555555555554431 34455555555
Q ss_pred CcchH----HHHhcCCCceEEeeccc
Q 005004 85 RSNMA----QAVLNCPLLHLLDIASC 106 (720)
Q Consensus 85 ~~~~~----~~~~~l~~L~~L~l~~~ 106 (720)
+|.+. ..+.++++|++|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCC
Confidence 55443 23444455555555544
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=6.2e-13 Score=126.84 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=94.4
Q ss_pred ccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-
Q 005004 401 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 479 (720)
Q Consensus 401 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~- 479 (720)
..+|..+ .+.++.|++++| .++.......+..+++|++|++++|.+.... ...+..+++|++|++++|.+++++.
T Consensus 24 ~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 24 NKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp SSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred ccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHh
Confidence 4455433 244677777776 4544222334667777788888777765432 3457777788888888888777655
Q ss_pred HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccC
Q 005004 480 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 480 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~ 550 (720)
.|..+++|++|++++|. ++...+..+ ..+++|+.|++++|+++. ..+..+..+++|+.|++++|+.
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSF---IGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSS---TTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCE
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHc---CCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCC
Confidence 57777888888888766 665544444 567778888888887775 4456667777888888887763
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=3.1e-13 Score=132.79 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=127.2
Q ss_pred cCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee--ccCCCccEEeccCcchH--HHHhcCCCceEEeecc
Q 005004 30 DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIAS 105 (720)
Q Consensus 30 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~~~--~~~~~l~~L~~L~l~~ 105 (720)
.+.++..++++++.+. .++ .+..+++|++|++++|.+..++ ..+++|++|++++|.+. ..+.++++|+.|++++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 4666778889998884 444 4678999999999999998776 36889999999999876 3388899999999999
Q ss_pred ccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccccCCcCcEEeccCCCCCc
Q 005004 106 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGIT 183 (720)
Q Consensus 106 ~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~l~ 183 (720)
|. ++ .++... . ++|++|++++|. +.+. ..+. .+++|+.|++++|. .++ .+..+++|+.|++++ +.++
T Consensus 95 N~-l~--~l~~~~-~-~~L~~L~L~~N~-l~~~--~~l~-~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~ 163 (263)
T 1xeu_A 95 NR-LK--NLNGIP-S-ACLSRLFLDNNE-LRDT--DSLI-HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEIT 163 (263)
T ss_dssp SC-CS--CCTTCC-C-SSCCEEECCSSC-CSBS--GGGT-TCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCC
T ss_pred Cc-cC--CcCccc-c-CcccEEEccCCc-cCCC--hhhc-CcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCc
Confidence 85 65 344322 2 889999999987 5543 2344 78899999999887 443 677888899999988 4777
Q ss_pred hhhHHHhhccccccEEeccCCccccc
Q 005004 184 SASMAAISHSYMLEVLELDNCNLLTS 209 (720)
Q Consensus 184 ~~~~~~l~~~~~L~~L~l~~~~~~~~ 209 (720)
+. ..+..+++|+.|++++|.+...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 5677888888888888876544
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=6.3e-13 Score=144.12 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=138.6
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCc
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 86 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~ 86 (720)
+++|++|++++|.++. +| ..+++|++|++++|.+.+ +|. +.. +|++|++++|.+..++..+++|++|++++|
T Consensus 79 ~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 79 PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNN 150 (571)
T ss_dssp CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCC
Confidence 3789999999999984 55 558999999999999965 777 554 999999999999988888999999999999
Q ss_pred chHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHH----HhcCccceeeccCCC--C
Q 005004 87 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIA----LSCANLRILNSSYCP--N 160 (720)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~----~~l~~L~~L~l~~~~--~ 160 (720)
.+...-..+++|+.|++++|. ++ .+|. +. ++|++|++++|. ++ ..+. +. .....|+.|++++|. .
T Consensus 151 ~l~~lp~~l~~L~~L~Ls~N~-L~--~lp~-l~--~~L~~L~Ls~N~-L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 151 QLTMLPELPTSLEVLSVRNNQ-LT--FLPE-LP--ESLEALDVSTNL-LE-SLPA-VPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp CCSCCCCCCTTCCEEECCSSC-CS--CCCC-CC--TTCCEEECCSSC-CS-SCCC-CC--------CCEEEECCSSCCCC
T ss_pred ccCcCCCcCCCcCEEECCCCC-CC--Ccch-hh--CCCCEEECcCCC-CC-chhh-HHHhhhcccccceEEecCCCccee
Confidence 987333367899999999995 66 3666 44 899999999997 55 2222 32 122333999999998 8
Q ss_pred CccccccCCcCcEEeccCCCCCchhhHHHhhcccc
Q 005004 161 ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYM 195 (720)
Q Consensus 161 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 195 (720)
+|..++++++|+.|++++ +.+++..+..+..+..
T Consensus 222 lp~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 222 IPENILSLDPTCTIILED-NPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCGGGGGSCTTEEEECCS-SSCCHHHHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeC-CcCCCcCHHHHHHhhc
Confidence 899899999999999999 6999999988887643
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=1e-12 Score=125.34 Aligned_cols=131 Identities=9% Similarity=0.080 Sum_probs=66.7
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcch
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 88 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~ 88 (720)
+++.|++++|.|+.+.+.+|..+++|++|++++|.+....|..+.++++|++|++++|++..++.
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--------------- 97 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK--------------- 97 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT---------------
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH---------------
Confidence 45555555555555445555555555555555555544444555555555555555555554431
Q ss_pred HHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 89 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 89 ~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
..+.++++|+.|++++|. ++. ..+..+..+++|++|++++|. +.......+. .+++|+.|++++|.
T Consensus 98 -~~f~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 98 -SLFEGLFSLQLLLLNANK-INC-LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFS-PLRAIQTMHLAQNP 163 (220)
T ss_dssp -TTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred -hHccCCCCCCEEECCCCC-CCE-eCHHHcCCCCCCCEEECCCCc-CCEECHHHHh-CCCCCCEEEeCCCC
Confidence 234455555555555553 331 113445555666666666654 3332222232 45566666666653
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2.8e-12 Score=114.19 Aligned_cols=130 Identities=23% Similarity=0.221 Sum_probs=102.2
Q ss_pred CCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCC-hhHHHhcccccc
Q 005004 410 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLK 488 (720)
Q Consensus 410 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~ 488 (720)
.++|+.|++++| .+.+..++..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+ +|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 467888888887 555445666677888899999998877654 567788999999999999998 777888899999
Q ss_pred EEEcCCCCCCChhH-HHHHHhcCCCCCcceeecCCCccchHHH--HHHHhhCCCCcEEeccC
Q 005004 489 VLKLQACKYLTNTS-LESLYKKGSLPALQELDLSYGTLCQSAI--EELLAYCTHLTHVSLNG 547 (720)
Q Consensus 489 ~L~l~~~~~l~~~~-~~~l~~~~~~~~L~~L~l~~~~i~~~~~--~~~l~~~~~L~~L~l~~ 547 (720)
.|++++|. +++.. +..+ ..+++|+.|++++|.+++... ...+..+++|+.|++++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPL---KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSC-CCSHHHHGGG---GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCc-CCChHHHHHH---hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999987 77653 2333 778999999999998876211 25788899999998864
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1e-12 Score=125.31 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=87.6
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhccccccE
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKV 489 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~ 489 (720)
++++.|++++| .+... .+..+..+++|++|++++|.+.... +..+..+++|++|++++|.++.+|. .|..+++|+.
T Consensus 32 ~~l~~L~l~~n-~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVI-PPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSS-CCCEE-CTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCC-cCCCc-CHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 56777777776 44431 2234566777777777777665432 4566777777777777777777666 4567777777
Q ss_pred EEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccC
Q 005004 490 LKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 490 L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~ 550 (720)
|++++|. ++...+..+ ..+++|+.|++++|.++. ..+..+..+++|+.|++++|+.
T Consensus 109 L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANK-INCLRVDAF---QDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCC-CCEeCHHHc---CCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCc
Confidence 7777766 665544444 567777777777777765 3444566677777777777763
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=2.7e-12 Score=130.99 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=132.4
Q ss_pred cCcCCeeecCCCCCc--------------------hhhHHhhhc--------CCCCcEEEeCCCccCCcccccccccCCC
Q 005004 7 LRNLEALTLGRGQLG--------------------DAFFHALAD--------CSMLKSLNVNDATLGNGVQEIPINHDQL 58 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~--------------------~~~~~~~~~--------~~~L~~L~l~~~~l~~~~~~~~~~l~~L 58 (720)
+++|+.|||++|+|. .+...+|.+ |++|+.|+|.+ .+...-+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999988 344567778 89999999988 6654445668888999
Q ss_pred cEEEcccccceeee----ccCCCccEEeccCcchH--------HHHhcCCCce-EEeeccccCcchhhHHHHhhcCCCCC
Q 005004 59 RRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA--------QAVLNCPLLH-LLDIASCHKLSDAAIRLAATSCPQLE 125 (720)
Q Consensus 59 ~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~--------~~~~~l~~L~-~L~l~~~~~l~~~~l~~~~~~l~~L~ 125 (720)
+.|++.+|.+..++ .++.++..+....+... ..+.++..|+ .+.+.....+. ..+...-....++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~-~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE-DEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH-HHHHHTTCCGGGCS
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH-HHHhhcccCccccc
Confidence 99999988887665 24666666666553321 3355667777 55555433221 11111112356778
Q ss_pred EEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccc-cccCCcCcEEeccCCCCCchhhHHHhhcccccc-EEec
Q 005004 126 SLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLE-VLEL 201 (720)
Q Consensus 126 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~-~L~l 201 (720)
.+.+.+. +.......+...+++|+.+++++|. .++.. +..+++|+.+++.+ .++.....+|..+.+|+ .+++
T Consensus 206 ~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 206 FLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp EEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEE
T ss_pred eEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEE
Confidence 8888775 4456666666568999999999875 66663 66788888888887 47777778888888888 8888
Q ss_pred cC
Q 005004 202 DN 203 (720)
Q Consensus 202 ~~ 203 (720)
.+
T Consensus 282 ~~ 283 (329)
T 3sb4_A 282 PA 283 (329)
T ss_dssp CT
T ss_pred cc
Confidence 65
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=4.2e-13 Score=127.11 Aligned_cols=177 Identities=11% Similarity=0.002 Sum_probs=103.1
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCcchHH
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQ 90 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 90 (720)
+.++.+++.++.+ |..+ .++|++|++++|.+....+..+..+++|++|++++|++..++. .
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------~ 70 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN----------------G 70 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT----------------T
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh----------------h
Confidence 5677777766643 3222 4688999999998876555667788889999998888876652 1
Q ss_pred HHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccc-cc
Q 005004 91 AVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE-SV 166 (720)
Q Consensus 91 ~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~ 166 (720)
.+.++++|++|++++|. ++ .++ ..+..+++|++|++++|. +.......+. .+++|+.|++++|. .++.. +.
T Consensus 71 ~~~~l~~L~~L~Ls~n~-l~--~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQ-LQ--SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CC--CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hcCCCCCcCEEECCCCc-CC--ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhc-cCCcCCEEECCCCccceeCHHHhc
Confidence 22344444444444442 33 112 223445555555555554 3322211122 45555555555554 33332 45
Q ss_pred cCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccc
Q 005004 167 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQN 219 (720)
Q Consensus 167 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 219 (720)
.+++|++|+++++ .+. ..+++|++|++..+.+.+.+|..+..+..
T Consensus 146 ~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 146 RLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 5677777777763 332 34567777888778777777776655443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.7e-12 Score=116.85 Aligned_cols=126 Identities=18% Similarity=0.258 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCccC-CcccccccccCCCcEEEcccccceeee--ccCCCccEEeccCcchH----HHHhcCCCceEEeec
Q 005004 32 SMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIA 104 (720)
Q Consensus 32 ~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~L~~L~l~~~~~~----~~~~~l~~L~~L~l~ 104 (720)
++|++|++++|.+. +.+|..+..+++|++|++++|.+..+. ..+++|++|++++|.+. ..+.++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 44555555555553 344544455555555555555544331 23455555555555443 556678888888888
Q ss_pred cccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhH--HHHHHhcCccceeeccCCC
Q 005004 105 SCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLRILNSSYCP 159 (720)
Q Consensus 105 ~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~~~ 159 (720)
+|. ++....+..+..+++|++|++++|. +..... ......+++|+.|++++|.
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 884 6632222567788888888888886 443322 2334478888888888775
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=1.3e-12 Score=125.59 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=67.5
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCc
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 86 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~ 86 (720)
+.++.+++.++. +|..+ .++|++|++++|.+.+..|..+..+++|++|++++|++..++ .++++|++|++++|
T Consensus 22 ~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 456666665543 23222 266777777777766555666666777777777777766554 23455555555555
Q ss_pred chH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCC
Q 005004 87 NMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 133 (720)
Q Consensus 87 ~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~ 133 (720)
.+. ..+..+++|++|++++|. ++ .+|..+..+++|++|++++|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LT--ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CC--SCCTTGGGCTTCSEEECCSSC
T ss_pred cCCccChhHhCcchhhCeEeccCCc-cc--ccCcccccCCCCCEEECCCCc
Confidence 443 234556666666666653 44 445555566666666666654
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.3e-12 Score=133.44 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=77.3
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhcccccc-
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLK- 488 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~- 488 (720)
.++..+.+.+. +....+......|++|+.+++.+|.+... +...|..+++|+++++.+| +..++. .|.+|++|+
T Consensus 202 ~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 202 RDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred cccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 44555555552 33322333333467777777777654432 2456777777777777776 665555 677777777
Q ss_pred EEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEe
Q 005004 489 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVS 544 (720)
Q Consensus 489 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~ 544 (720)
.+.+.+ .++.+...+| .+|++|+.++++++++.. .-...|..+++|+.+.
T Consensus 278 ~l~l~~--~l~~I~~~aF---~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA--SVTAIEFGAF---MGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT--TCCEECTTTT---TTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred EEEEcc--cceEEchhhh---hCCccCCEEEeCCCccCc-cchhhhcCCcchhhhc
Confidence 777775 3665555544 677777777777776665 3445666777777665
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=3.1e-12 Score=116.45 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=105.9
Q ss_pred CCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCC-hhHHHhccccc
Q 005004 409 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQL 487 (720)
Q Consensus 409 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L 487 (720)
..++|+.|++++| .+.+..++..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3478899999988 565445677678888999999999886654 567788999999999999988 67777789999
Q ss_pred cEEEcCCCCCCChhHH-HHHHhcCCCCCcceeecCCCccchHHHH---HHHhhCCCCcEEeccCccC
Q 005004 488 KVLKLQACKYLTNTSL-ESLYKKGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNGCGN 550 (720)
Q Consensus 488 ~~L~l~~~~~l~~~~~-~~l~~~~~~~~L~~L~l~~~~i~~~~~~---~~l~~~~~L~~L~l~~~~~ 550 (720)
+.|++++|. +++... .. +..+++|+.|++++|.+++ ..+ ..+..+++|+.|++++|..
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTS
T ss_pred CEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999987 776432 33 3788999999999998876 222 5788899999999999863
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=1.1e-11 Score=129.95 Aligned_cols=59 Identities=29% Similarity=0.388 Sum_probs=39.0
Q ss_pred eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccchhhhhhhcCCCCCCCccEEEecc
Q 005004 242 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 315 (720)
Q Consensus 242 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 315 (720)
.|..|..++.+......+... ....+.+|+.+.+.+ .++.+...+| .++.+|+++.+.+
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~~----------~F~~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPEK----------TFYGCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY 329 (394)
T ss_dssp TTTTCTTCCEEEECSSEECTT----------TTTTCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT
T ss_pred ccccccccceeccCceeeccc----------ccccccccccccccc--ccceechhhh---cCCCCCCEEEeCC
Confidence 567777777776655443221 122467888888875 5666666666 6788888888754
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=3.5e-13 Score=126.47 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=111.7
Q ss_pred cccccCcCCeeecCCCCCchhhHH------hhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFH------ALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--- 73 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--- 73 (720)
.+...++++.++++.+.+++..|. .|..+++|++|++++|.+.+ +| .+..+++|++|++++|.+..++.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhh
Confidence 356677888888888888877665 89999999999999999865 77 78889999999999999987763
Q ss_pred cCCCccEEeccCcchH--HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhH---------HH
Q 005004 74 RCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL---------RE 142 (720)
Q Consensus 74 ~~~~L~~L~l~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~---------~~ 142 (720)
.+++|++|++++|.+. ..+..+++|++|++++|. ++.......+..+++|++|++++|. +....+ ..
T Consensus 91 ~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHH
Confidence 3578888888888776 567778888888888875 5532222467788888888888886 433222 22
Q ss_pred HHHhcCccceee
Q 005004 143 IALSCANLRILN 154 (720)
Q Consensus 143 ~~~~l~~L~~L~ 154 (720)
+...+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 233667777665
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=5.3e-12 Score=130.51 Aligned_cols=173 Identities=22% Similarity=0.208 Sum_probs=97.8
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCccccccc-ccCCCcEEEcccccceeeeccCCCccEEeccCcchH
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI-NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA 89 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 89 (720)
+.++++++.++. +|..+ ...+++|+|++|.+....+..+. ++++|++|++++|++..++.
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~---------------- 81 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS---------------- 81 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT----------------
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh----------------
Confidence 345555555543 23222 22355555555555433333343 45555555555555554431
Q ss_pred HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCcccc--
Q 005004 90 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLES-- 165 (720)
Q Consensus 90 ~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-- 165 (720)
..+.++++|++|++++|. ++. ..+..+..+++|++|++++|. +....+..+. .+++|+.|++++|. .+|...
T Consensus 82 ~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNH-LHT-LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp TTTTTCTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC
T ss_pred hhccCCCCCCEEECCCCc-CCc-CCHHHhCCCcCCCEEECCCCc-ccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhc
Confidence 345556666666666653 441 112345666666666666665 4433333333 66677777777665 455543
Q ss_pred --ccCCcCcEEeccCCCCCchhhHHHhhcccc--ccEEeccCCccc
Q 005004 166 --VRLPMLTVLQLHSCEGITSASMAAISHSYM--LEVLELDNCNLL 207 (720)
Q Consensus 166 --~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~--L~~L~l~~~~~~ 207 (720)
..+++|+.|++++ +.++...+..+..++. ++.|++++|++.
T Consensus 158 ~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 4578888888888 5777777777777766 478888888654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=5.1e-12 Score=120.46 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=105.5
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCccc-ccccccCCCcEEEcccccceeee----ccCCCccEEeccC
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQ-EIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 85 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~ 85 (720)
+.++++++.++. +|..+ ...+++|++++|.+....+ ..+..+++|++|++++|++..++ .++++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888888775 34443 3456788888888865433 44677888888888888887765 3578888888888
Q ss_pred cchH----HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 86 SNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 86 ~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
|.+. ..+.++++|++|++++|. ++. ..|..+..+++|++|++++|. +....+..+. .+++|+.|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNR-ITC-VGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFD-TLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSC-CCC-BCTTSSTTCTTCSEEECTTSC-CCCBCTTTTT-TCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCc-CCe-ECHhHcCCCccCCEEECCCCc-CCEECHHHhc-CCCCCCEEEecCcC
Confidence 8776 457888999999998885 552 235667888899999999887 6655455555 78899999998885
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.2e-11 Score=113.55 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=63.1
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcC-CCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCC
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADC-SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQ 77 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~ 77 (720)
++..+++|+.|++++|.++.+ + .+..+ ++|++|++++|.+.+ + +.+..+++|++|++++|++..++ ..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466777888888888887754 3 34444 488888888887754 3 45677778888888888777665 23455
Q ss_pred ccEEeccCcchH---H--HHhcCCCceEEeeccc
Q 005004 78 LEHLSLKRSNMA---Q--AVLNCPLLHLLDIASC 106 (720)
Q Consensus 78 L~~L~l~~~~~~---~--~~~~l~~L~~L~l~~~ 106 (720)
|++|++++|.+. . .+..+++|+.|++++|
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 555555555443 1 3444455555555554
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=5.1e-11 Score=114.31 Aligned_cols=133 Identities=17% Similarity=0.042 Sum_probs=78.4
Q ss_pred CCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhh
Q 005004 380 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 459 (720)
Q Consensus 380 ~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 459 (720)
++|+.+++++|.++ +..+..+..+++|+.|++++| .+.. ..+..+..+++|+.|++++|.+.... ...+.
T Consensus 40 ~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~L~~N-~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-------KLEPGVFDSLINLKELYLGSN-QLGA-LPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred CCCCEEEcCCCccC-------ccCHHHhhCccCCcEEECCCC-CCCC-cChhhcccCCCcCEEECCCCcCCccC-hhHhC
Confidence 45666666666653 333455666667777777766 3332 11233456666777777766655432 23455
Q ss_pred cCCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccc
Q 005004 460 SLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 526 (720)
Q Consensus 460 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~ 526 (720)
.+++|++|++++|.+..+|..+..+++|+.|++++|. ++......+ ..+++|+.|++++|.+.
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAF---DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTT---TTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHH---hCCCCCCEEEeeCCCcc
Confidence 6667777777777766666666666777777776655 554433322 55666666666666554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=5e-13 Score=145.82 Aligned_cols=123 Identities=23% Similarity=0.217 Sum_probs=90.3
Q ss_pred CccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEEE
Q 005004 412 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 491 (720)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 491 (720)
.|+.|++++| .++. +|. +..+++|+.|++++|.+... +..++.+++|+.|++++|.++++| .+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCCCC--CGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCccccccc--chhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 4788888887 5554 555 77788888888888877643 457788888888888888888877 778888888888
Q ss_pred cCCCCCCChhH-HHHHHhcCCCCCcceeecCCCccchH--HHHHHHhhCCCCcEEec
Q 005004 492 LQACKYLTNTS-LESLYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSL 545 (720)
Q Consensus 492 l~~~~~l~~~~-~~~l~~~~~~~~L~~L~l~~~~i~~~--~~~~~l~~~~~L~~L~l 545 (720)
+++|. +++.. +..+ ..+++|+.|++++|.+++. .....+..+++|+.|++
T Consensus 515 Ls~N~-l~~~~~p~~l---~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNR-LQQSAAIQPL---VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSC-CCSSSTTGGG---GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-CCCCCCcHHH---hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88876 76654 4544 6788888888888887652 12244556788888764
No 128
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=5.9e-11 Score=122.36 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=98.1
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcC-----CCCcEEEeCCCccCCc-ccccccccCCCcEEEcccccceeee--------
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADC-----SMLKSLNVNDATLGNG-VQEIPINHDQLRRLEITKCRVMRVS-------- 72 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-------- 72 (720)
.++|+.|++++|.++......+..+ ++|++|+|++|.+... +......+++|++|++++|.+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3568888888888887666665543 6888888888877543 2222334567788888887775322
Q ss_pred -ccCCCccEEeccCcchH--------HHHhcCCCceEEeeccccCcchhh---HHHHhhcCCCCCEEEecCCCCCchhhH
Q 005004 73 -IRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESL 140 (720)
Q Consensus 73 -~~~~~L~~L~l~~~~~~--------~~~~~l~~L~~L~l~~~~~l~~~~---l~~~~~~l~~L~~L~l~~~~~l~~~~~ 140 (720)
...++|++|++++|.+. ..+..+++|++|++++|. +++.+ ++..+...++|++|++++|. +++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 13456666666666654 233556666666666664 55433 23445555666666666665 555444
Q ss_pred HHHHHhcCccceeeccCCCCCccccccCCcCcEEeccCCCCCchhhHHHhhcc
Q 005004 141 REIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHS 193 (720)
Q Consensus 141 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 193 (720)
..++.. +...++|++|++++ +.+++.+...+..+
T Consensus 229 ~~l~~~------------------L~~~~~L~~L~Ls~-N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 229 LALARA------------------AREHPSLELLHLYF-NELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHH------------------HHHCSSCCEEECTT-SSCCHHHHHHHHHC
T ss_pred HHHHHH------------------HHhCCCCCEEeccC-CCCCHHHHHHHHHH
Confidence 444321 22334555555555 36666666655543
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=1e-10 Score=122.49 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=59.0
Q ss_pred cccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhcc
Q 005004 406 AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESC 484 (720)
Q Consensus 406 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~ 484 (720)
.+..+.+|+.+.+..+ ++.. -...|.+|.+|+.+.+.+. .+..+..+|.+|++|+.+++..+ ++.+.. +|.+|
T Consensus 292 ~F~~~~~L~~i~l~~~--i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--VKFI-GEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCEE-CTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccccc--ccee-chhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 3455666676666542 2221 1233566777777777543 33444566777777777777655 555544 67777
Q ss_pred ccccEEEcCCCCCCChhHHHHHHhcCCCCCccee
Q 005004 485 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQEL 518 (720)
Q Consensus 485 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L 518 (720)
++|+++.+..+ ++... . ++.+|++|+.+
T Consensus 366 ~~L~~i~lp~~--~~~~~-~---~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR--LEQYR-Y---DFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG--GGGGG-G---GBCTTCEEEEE
T ss_pred CCCCEEEECCC--CEEhh-h---eecCCCCCcEE
Confidence 88888777642 33321 2 23667777654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=1e-11 Score=116.40 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=116.8
Q ss_pred CCCCCCcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhH
Q 005004 377 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLY 456 (720)
Q Consensus 377 ~~~~~L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 456 (720)
.....++.++++.+.+.-- +.....+|..+..+++|+.|++++| .+.. ++ .+..+++|+.|++++|.+... +.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l~~l--~~ 87 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKKI--EN 87 (198)
T ss_dssp HHTTCCCCTTCSEEECCBC-CTTCCCCHHHHHHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEECSC--SS
T ss_pred HhcccccCcchheeEeccc-cCcHhhhhHHHhcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCcccc--cc
Confidence 4445666666666665300 0001223347889999999999998 5655 55 678889999999999987753 34
Q ss_pred HhhcCCCCCeeecCCcccCChhHHHhccccccEEEcCCCCCCChhHH-HHHHhcCCCCCcceeecCCCccchHHHH----
Q 005004 457 SLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSL-ESLYKKGSLPALQELDLSYGTLCQSAIE---- 531 (720)
Q Consensus 457 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~~~L~~L~l~~~~i~~~~~~---- 531 (720)
.+..+++|++|++++|.++++| .+..+++|+.|++++|. +++... ..+ ..+++|+.|++++|.+.+ ..+
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l---~~l~~L~~L~l~~N~l~~-~~~~~~~ 161 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKL---AALDKLEDLLLAGNPLYN-DYKENNA 161 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHH---TTTTTCSEEEECSCHHHH-HHHTTTT
T ss_pred hhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHH---hcCCCCCEEEecCCcccc-ccccccc
Confidence 5667789999999999999987 68899999999999987 776543 334 789999999999998865 322
Q ss_pred ------HHHhhCCCCcEEe
Q 005004 532 ------ELLAYCTHLTHVS 544 (720)
Q Consensus 532 ------~~l~~~~~L~~L~ 544 (720)
..+..+++|+.|+
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC
T ss_pred hHHHHHHHHHhCCCcEEEC
Confidence 3478899999997
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=6.9e-11 Score=108.31 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=58.9
Q ss_pred CCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhccccc
Q 005004 409 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQL 487 (720)
Q Consensus 409 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L 487 (720)
.+++|+.|++++| .++. ++......++|+.|++++|.+.+. ..+..+++|++|++++|.++++|+ .+..+++|
T Consensus 17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3444555555544 2332 222222223555555555544332 234445555555555555555443 33555555
Q ss_pred cEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchH--HHHHHHhhCCCCcEEeccCcc
Q 005004 488 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 488 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~--~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+.|++++|. ++.... +..+..+++|+.|++++|.++.. .-...+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNS-LVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCc-CCcchh--hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 555555544 433211 11123455555555555555431 001134555555555555543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=1.9e-11 Score=137.84 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=98.0
Q ss_pred hHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCccEEeccCcchH---HHHhcCCC
Q 005004 24 FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMA---QAVLNCPL 97 (720)
Q Consensus 24 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~~l~~ 97 (720)
.++.|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.+..++. ++++|++|+|++|.+. ..+.++++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 4677888899999999999885 677777788999999999999887763 6888999999998876 56788899
Q ss_pred ceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC
Q 005004 98 LHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 159 (720)
Q Consensus 98 L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 159 (720)
|++|+|++|. ++ .+|..++.+++|++|+|++|. +....+..+...-..+..+++++|.
T Consensus 295 L~~L~L~~N~-l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 295 LKYFYFFDNM-VT--TLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp CSEEECCSSC-CC--CCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEECCCCC-CC--ccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCc
Confidence 9999999885 65 677778999999999999998 6666666654221222345666664
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=5.2e-10 Score=116.45 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=94.9
Q ss_pred cCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeeccCCCccEEeccCc
Q 005004 7 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 86 (720)
Q Consensus 7 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~ 86 (720)
++.++.+.+.. .++.+...+|.++ +|+.+.+..+ +...-..++.+ .+|+.+++.. .+..+..
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~------------- 173 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE------------- 173 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS-------------
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH-------------
Confidence 45555666653 4555566666664 5777766654 32222233443 2456655543 3332220
Q ss_pred chHHHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC-CCcccc
Q 005004 87 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-NISLES 165 (720)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~ 165 (720)
.+|.+|++|+.+++.+|. ++ .++.....+.+|+.+.+..+ +.......+. .+++|+.+.+..+- .++...
T Consensus 174 ---~aF~~c~~L~~l~l~~n~-l~--~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~-~~~~L~~l~l~~~l~~I~~~a 244 (401)
T 4fdw_A 174 ---DIFYYCYNLKKADLSKTK-IT--KLPASTFVYAGIEEVLLPVT--LKEIGSQAFL-KTSQLKTIEIPENVSTIGQEA 244 (401)
T ss_dssp ---STTTTCTTCCEEECTTSC-CS--EECTTTTTTCCCSEEECCTT--CCEECTTTTT-TCTTCCCEECCTTCCEECTTT
T ss_pred ---HHhhCcccCCeeecCCCc-ce--EechhhEeecccCEEEeCCc--hheehhhHhh-CCCCCCEEecCCCccCccccc
Confidence 455666666666666553 43 33333333567777777643 3323333333 66777777776543 444444
Q ss_pred ccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 166 VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 166 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
+.-.+|+.+.+.. .++.....++..+++|+.+++.++.
T Consensus 245 F~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 245 FRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred cccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence 3346777777754 6677777777788888888876654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=2.2e-11 Score=137.22 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=80.7
Q ss_pred HHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceeeccCCC--CCccccccC
Q 005004 91 AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRL 168 (720)
Q Consensus 91 ~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~ 168 (720)
.+.++++|++|+|++|. ++ .+|..+..+++|++|+|++|. ++ ..+..+. .+++|++|+|++|. .+|..++++
T Consensus 242 ~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~-~l~~L~~L~L~~N~l~~lp~~~~~l 315 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT-SLPAELG-SCFQLKYFYFFDNMVTTLPWEFGNL 315 (727)
T ss_dssp GGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS-SCCSSGG-GGTTCSEEECCSSCCCCCCSSTTSC
T ss_pred hhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC-ccChhhc-CCCCCCEEECCCCCCCccChhhhcC
Confidence 34467777777777774 55 566667777888888888776 55 3444554 77788888888776 677778888
Q ss_pred CcCcEEeccCCCCCchhhHHHhhccc-cccEEeccCCcccccccccc
Q 005004 169 PMLTVLQLHSCEGITSASMAAISHSY-MLEVLELDNCNLLTSVSLEL 214 (720)
Q Consensus 169 ~~L~~L~l~~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~ 214 (720)
++|+.|++++ +.+++..+..+.... .+..+++++|.+.+.+|..+
T Consensus 316 ~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 316 CNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp TTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 8888888888 578877777766542 22346777777766666433
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=1.4e-10 Score=107.85 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=74.3
Q ss_pred ccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-
Q 005004 401 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 479 (720)
Q Consensus 401 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~- 479 (720)
+.+|..+. ++++.|++++| .+........+..+++|++|++++|.+.... +..+..+++|++|++++|++++++.
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHH
Confidence 44554332 36777777776 4443211123567777777777777665543 4556677777777777777776554
Q ss_pred HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccc
Q 005004 480 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 526 (720)
Q Consensus 480 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~ 526 (720)
.|..+++|+.|++++|+ +++..+..+ ..+++|+.|++++|.+.
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSF---EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSS---TTCTTCCEEECTTCCBC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHh---hcCCCCCEEEeCCCCcc
Confidence 46677777777777765 665544433 56677777777777654
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.05 E-value=2.4e-10 Score=117.86 Aligned_cols=137 Identities=21% Similarity=0.122 Sum_probs=105.4
Q ss_pred CCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHh-----hcCCCCCeeecCCcccCC-----hhH
Q 005004 410 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL-----RSLQNLTMLDLSYTFLTN-----LEP 479 (720)
Q Consensus 410 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~-----l~~ 479 (720)
.++|+.|++++| .+++..+......+++|++|++++|.+... +...+ ...++|++|++++|.+++ ++.
T Consensus 100 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 100 RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 368999999998 677766666667778899999999976543 23333 246889999999998874 444
Q ss_pred HHhccccccEEEcCCCCCCChhHHHHHH-hcCCCCCcceeecCCCccchH---HHHHHHhhCCCCcEEeccCcc
Q 005004 480 VFESCLQLKVLKLQACKYLTNTSLESLY-KKGSLPALQELDLSYGTLCQS---AIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 480 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~~~L~~L~l~~~~i~~~---~~~~~l~~~~~L~~L~l~~~~ 549 (720)
.+..+++|++|++++|. +++.+...++ .+..+++|++|++++|.+++. .+...+..+++|++|++++|+
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 66788999999999988 8877655542 346678999999999999874 344556678999999999986
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=3.8e-10 Score=117.44 Aligned_cols=233 Identities=14% Similarity=0.187 Sum_probs=151.3
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCcc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLE 79 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~ 79 (720)
+|..+ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .+...-+.++.++++|+.+++.+|.+..++. .+.+|+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 56775 7999999866 888889999996 799999986 5544445778889999999999999988773 367888
Q ss_pred EEeccCcchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccceee
Q 005004 80 HLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILN 154 (720)
Q Consensus 80 ~L~l~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 154 (720)
.+.+..+ +. .+|.++++|+.+++..+ ++ .++ ..|.+ .+|+.+.+.++ +.......+. .|++|+.+.
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~--~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~-~c~~L~~l~ 277 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VS--TIGQEAFRE-SGITTVKLPNG--VTNIASRAFY-YCPELAEVT 277 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCTT--CC--EECTTTTTT-CCCSEEEEETT--CCEECTTTTT-TCTTCCEEE
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCCC--cc--Ccccccccc-CCccEEEeCCC--ccEEChhHhh-CCCCCCEEE
Confidence 8888754 32 67788888888888764 33 232 33444 67888888654 3333333333 777788887
Q ss_pred ccCCC-C------Ccc-ccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccccccceeccccc
Q 005004 155 SSYCP-N------ISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 226 (720)
Q Consensus 155 l~~~~-~------~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~l~~~~~~ 226 (720)
+.++. . ++. .+..|++|+.+.+.. .++.....++..+.+|+.+.+..+ ...++ .
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~-------~------- 339 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQIN-------F------- 339 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEEC-------T-------
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEc-------H-------
Confidence 76654 1 333 344566666666664 455555566666666666666432 11111 1
Q ss_pred ccccchhhhcccceeeccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCC
Q 005004 227 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 287 (720)
Q Consensus 227 ~l~~~~l~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 287 (720)
-.|.+| +|+.+.+.+|.........+.++. ..++.|.+..
T Consensus 340 --------------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~------~~l~~l~vp~ 379 (401)
T 4fdw_A 340 --------------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP------DDITVIRVPA 379 (401)
T ss_dssp --------------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSC------TTCCEEEECG
T ss_pred --------------HhCCCC-CCCEEEEcCCCCcccccccccCCC------CCccEEEeCH
Confidence 146677 777777777766554322222211 3667777766
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=1.2e-10 Score=108.27 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=104.2
Q ss_pred cEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCCh-hHHHhccccccEEEc
Q 005004 414 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 492 (720)
Q Consensus 414 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l 492 (720)
+.++++++ .++. +|..+. +++++|++++|.+........+..+++|++|++++|.++++ |..|..+++|+.|++
T Consensus 11 ~~l~~s~~-~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR-GLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS-CCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 78889887 5544 554332 48999999999887653222488999999999999999987 558999999999999
Q ss_pred CCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHHHHHhhCCCCcEEeccCccCc
Q 005004 493 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 551 (720)
Q Consensus 493 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~l~~~~~L~~L~l~~~~~l 551 (720)
++|. +++..+..+ ..+++|+.|++++|++++ ..+..+..+++|+.|++++|+..
T Consensus 86 s~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENK-IKEISNKMF---LGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCC-CCEECSSSS---TTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCccCHHHh---cCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCcc
Confidence 9987 887655544 789999999999999987 56677888999999999999743
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=4.7e-10 Score=104.20 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=72.7
Q ss_pred ccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-
Q 005004 401 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 479 (720)
Q Consensus 401 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~- 479 (720)
..+|..+ .++|+.|++++| .++. ++..+..+++|+.|++++|.+.... ...+..+++|++|++++|.++.+++
T Consensus 23 ~~ip~~~--~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 23 KVLPKGI--PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp SSCCSCC--CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CcCCCCC--CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHH
Confidence 4444433 256777777776 4443 4455667777777777777665543 3456677777777777777776654
Q ss_pred HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCcc
Q 005004 480 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 525 (720)
Q Consensus 480 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i 525 (720)
.|..+++|+.|++++|. ++.+....+ ..+++|+.|++++|.+
T Consensus 97 ~f~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGND-ISVVPEGAF---NDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTTCTTCCEEECCSSC-CCBCCTTTT---TTCTTCCEEECCSSCE
T ss_pred HhCCCCCCCEEECCCCC-CCeeChhhh---hcCccccEEEeCCCCe
Confidence 56677777777777765 554433333 5566677777776654
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.00 E-value=4.7e-10 Score=99.97 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=82.5
Q ss_pred ccccccccCCCCccccCcCCccccCCccEEEcCCCcChHHHHhhCCCccEEecccccchhhhhhc---CCcccEEEeecc
Q 005004 591 LLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLD---CPKLTSLFLQSC 667 (720)
Q Consensus 591 ~L~~l~l~~c~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~L~~l~~~---~~~L~~L~l~~~ 667 (720)
.|+.|++++|. +++..+..+..|++|++|++++|..+++.+ ++.+... +++|++|++++|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g----------------L~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC----------------LERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHH----------------HHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHH----------------HHHHHhcccccCCCCEEEcCCC
Confidence 47888888886 777777667777777777777777777665 5666642 578999999999
Q ss_pred c-CChhhHHHHHhcCCCcceEeccCCcCCCchh--HHHHHHhCCCcc
Q 005004 668 N-IDEEGVESAITQCGMLETLDVRFCPKICSTS--MGRLRAACPSLK 711 (720)
Q Consensus 668 ~-i~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~p~l~ 711 (720)
. |||.++.. +..+++|+.|++++|+.+++.+ ...+....|.++
T Consensus 125 ~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 125 GNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCHHHHHH-GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CcCCHHHHHH-HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8 99999987 5689999999999999999965 566668899865
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=5.3e-10 Score=103.87 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=92.7
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCc
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 86 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~ 86 (720)
++++++++.++. +|..+ .++|++|++++|.+. .+|..+.++++|++|++++|.+..++ .++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 578888888774 34433 357888889888884 67777888888999999888888765 35788889999888
Q ss_pred chH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCC
Q 005004 87 NMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSC 134 (720)
Q Consensus 87 ~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~ 134 (720)
.+. ..+.++++|+.|++++|. ++ .++ ..+..+++|++|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~--~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-IS--VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CC--BCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CC--eeChhhhhcCccccEEEeCCCCe
Confidence 876 468889999999999985 66 344 4578899999999999973
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=7.3e-10 Score=101.59 Aligned_cols=120 Identities=12% Similarity=0.093 Sum_probs=90.6
Q ss_pred CCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccC
Q 005004 10 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 85 (720)
Q Consensus 10 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~ 85 (720)
.+.++++++.++.+ |..+ .++|++|++++|.+.+..+..+..+++|++|++++|++..++ .++++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 46778888877653 3222 367888888888886555556677888888888888887765 3578888888888
Q ss_pred cchH----HHHhcCCCceEEeeccccCcchhhHH-HHhhcCCCCCEEEecCCCCCc
Q 005004 86 SNMA----QAVLNCPLLHLLDIASCHKLSDAAIR-LAATSCPQLESLDMSNCSCVS 136 (720)
Q Consensus 86 ~~~~----~~~~~l~~L~~L~l~~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~~l~ 136 (720)
|.+. ..+.++++|++|++++|. ++ .+| ..+..+++|++|++++|. +.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~-l~--~~~~~~~~~l~~L~~L~l~~N~-~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQ-LK--SVPDGIFDRLTSLQKIWLHTNP-WD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CS--CCCTTTTTTCTTCCEEECCSSC-BC
T ss_pred CCccccCHHHhhCCcccCEEECcCCc-ce--EeCHHHhcCCcccCEEEecCCC-ee
Confidence 8776 446788999999999985 66 444 345789999999999998 44
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.91 E-value=9.6e-10 Score=100.79 Aligned_cols=129 Identities=19% Similarity=0.121 Sum_probs=81.2
Q ss_pred CcccccccceeeeeeecCcccccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcC
Q 005004 382 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 461 (720)
Q Consensus 382 L~~l~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 461 (720)
.+.++.+++.+ ..+|..+ .++|+.|++++| .+.. ..+..+..+++|++|++++|.+.... ...+..+
T Consensus 9 ~~~l~~~~~~l--------~~~p~~~--~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l 75 (177)
T 2o6r_A 9 GTEIRCNSKGL--------TSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKL 75 (177)
T ss_dssp TTEEECCSSCC--------SSCCTTC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTC
T ss_pred CCEEEecCCCC--------ccCCCCC--CCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCCcceEeC-hhHccCC
Confidence 34555555555 4444333 367788888876 3443 12334567777888888777765432 3345677
Q ss_pred CCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch
Q 005004 462 QNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 462 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~ 527 (720)
++|++|++++|.+++++. .+..+++|+.|++++|. ++......+ ..+++|+.|++++|.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~---~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIF---DRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHh---cCCcccCEEEecCCCeec
Confidence 777788887777777655 45677777777777765 654433322 556777777777776654
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.89 E-value=2e-08 Score=104.94 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=37.5
Q ss_pred hccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhH-HHhccccccEEEcCCCCCCChhHHHHHHhcCC
Q 005004 433 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGS 511 (720)
Q Consensus 433 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 511 (720)
|.+|.+|+.+.+..+ .+..+..+|..|++|+.+.+..+ ++.+.. +|.+|++|+.+.+.++. . ... .+..
T Consensus 307 F~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~--~--~~~---~~~~ 376 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR--S--QWN---AIST 376 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH--H--HHH---TCBC
T ss_pred ecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce--e--ehh---hhhc
Confidence 445555555555432 22333445666666666666433 444433 66667777777666532 1 111 2245
Q ss_pred CCCcceeecCCCc
Q 005004 512 LPALQELDLSYGT 524 (720)
Q Consensus 512 ~~~L~~L~l~~~~ 524 (720)
+.+|+.+.+..+.
T Consensus 377 ~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 377 DSGLQNLPVAPGS 389 (394)
T ss_dssp CCCC---------
T ss_pred cCCCCEEEeCCCC
Confidence 6666666665543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=2.1e-08 Score=104.87 Aligned_cols=280 Identities=14% Similarity=0.267 Sum_probs=128.6
Q ss_pred cccccC-cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCc---cCCcccccccccCCCcEEEcccccceeee----cc
Q 005004 3 AVSLLR-NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT---LGNGVQEIPINHDQLRRLEITKCRVMRVS----IR 74 (720)
Q Consensus 3 ~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~---l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~ 74 (720)
+|..++ .|+.+.+.. .++.+...+|.+|.+|+.+.+..+. +...-..++.++.+|+.+.+..+ +..+. .+
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455553 467777764 3666667777777777777776542 22112344555666666655432 33332 24
Q ss_pred CCCccEEeccCcchH---HHHhcCCCceEEeeccccCcchhhHHHHhhcCCCCCEEEecCCCCCchhhHHHHHHhcCccc
Q 005004 75 CPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 151 (720)
Q Consensus 75 ~~~L~~L~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 151 (720)
+.+|+.+.+..+-.. ..+..+..|+.+.+..+ ++ .+........+|+.+.+.... .......+. .+..++
T Consensus 136 c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~--~I~~~aF~~~~l~~i~ip~~~--~~i~~~af~-~c~~l~ 208 (394)
T 4gt6_A 136 CEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VT--AIEERAFTGTALTQIHIPAKV--TRIGTNAFS-ECFALS 208 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC--EECTTTTTTCCCSEEEECTTC--CEECTTTTT-TCTTCC
T ss_pred hcccccccccceeeeecccceecccccccccccce--ee--EeccccccccceeEEEECCcc--cccccchhh-hccccc
Confidence 566666666543211 45566666666666543 22 122222233556666665542 112222222 455555
Q ss_pred eeeccCCC--CCcccc--------------ccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCccccccccccc
Q 005004 152 ILNSSYCP--NISLES--------------VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELP 215 (720)
Q Consensus 152 ~L~l~~~~--~~~~~~--------------~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (720)
........ .+...+ .....+..+.+.. .++.....++..+..|+.+.+.+.. .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~---------~ 277 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSV---------V 277 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTC---------C
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEeccccc---------c
Confidence 55443322 000000 0112233333332 3444444555566666666654321 1
Q ss_pred cccceecccccccccchhhhccccee---eccCCCcccEEEeccCcccccccccchhhHHHHhhCCCceEEecCCCcccc
Q 005004 216 RLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 292 (720)
Q Consensus 216 ~L~~l~~~~~~~l~~~~l~~~~l~~l---~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~ 292 (720)
.+..-.+.+|..|+.+.+.. .+..+ .|.+|.+|+.+.+..+ ++.... .....|.+|+.+.+.. .++
T Consensus 278 ~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-------~aF~~C~~L~~i~ip~--sv~ 346 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD-------DAFAGCEQLERIAIPS--SVT 346 (394)
T ss_dssp EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT-------TTTTTCTTCCEEEECT--TCC
T ss_pred eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH-------hHhhCCCCCCEEEECc--ccC
Confidence 11122233344444333321 12222 4556666666655432 211110 0112345666666654 355
Q ss_pred hhhhhhhcCCCCCCCccEEEeccC
Q 005004 293 NSVCEVFSDGGGCPMLKSLVLDNC 316 (720)
Q Consensus 293 ~~~~~~~~~~~~~~~L~~L~l~~~ 316 (720)
.+...+| .+|.+|+++.+.++
T Consensus 347 ~I~~~aF---~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 347 KIPESAF---SNCTALNNIEYSGS 367 (394)
T ss_dssp BCCGGGG---TTCTTCCEEEESSC
T ss_pred EEhHhHh---hCCCCCCEEEECCc
Confidence 5544555 55666666665543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=1.2e-08 Score=92.47 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=78.3
Q ss_pred cCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEecc
Q 005004 9 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 84 (720)
Q Consensus 9 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~ 84 (720)
..+.|+++++.++. +|..+ .++|++|++++|.+.+..|..+..+++|++|++++|++..++ .++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35788999888875 44444 378899999999987777788888999999999999988776 357889999999
Q ss_pred CcchH----HHHhcCCCceEEeecccc
Q 005004 85 RSNMA----QAVLNCPLLHLLDIASCH 107 (720)
Q Consensus 85 ~~~~~----~~~~~l~~L~~L~l~~~~ 107 (720)
+|.+. ..+.++++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99887 457889999999999986
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=9.2e-09 Score=93.26 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=76.2
Q ss_pred CCcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCcchH----HHHhcCCCceEEeec
Q 005004 33 MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIA 104 (720)
Q Consensus 33 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~----~~~~~l~~L~~L~l~ 104 (720)
..+++++++|.+. .+|..+ .++|++|++++|.+..++ .++++|++|++++|.+. ..+.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999998884 466544 378999999999998774 36889999999999887 456889999999999
Q ss_pred cccCcchhhHH-HHhhcCCCCCEEEecCCC
Q 005004 105 SCHKLSDAAIR-LAATSCPQLESLDMSNCS 133 (720)
Q Consensus 105 ~~~~l~~~~l~-~~~~~l~~L~~L~l~~~~ 133 (720)
+|. ++ .++ ..+..+++|++|++++|.
T Consensus 87 ~N~-l~--~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQ-LK--SIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSC-CC--CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cC--EeCHHHhcCCCCCCEEEeCCCC
Confidence 985 66 344 457889999999999997
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=6.5e-08 Score=98.64 Aligned_cols=195 Identities=12% Similarity=0.139 Sum_probs=121.2
Q ss_pred CcCCeeecCCCCCch--------hhHHhhhcCCCCcEEEeCCCccC---------CcccccccccCCCcEEEccccccee
Q 005004 8 RNLEALTLGRGQLGD--------AFFHALADCSMLKSLNVNDATLG---------NGVQEIPINHDQLRRLEITKCRVMR 70 (720)
Q Consensus 8 ~~L~~L~l~~~~i~~--------~~~~~~~~~~~L~~L~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~~~~~~ 70 (720)
.+++.|.+-.....+ .+..+...+++|+.|.+.+.... +.++..+..+++|+.|+++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 355666665433321 12334567889999998765331 2355556677899999998874222
Q ss_pred ee-ccCCCccEEeccCcchH----HHHh--cCCCceEEeeccccC--cch---hhHHHHh--hcCCCCCEEEecCCCCCc
Q 005004 71 VS-IRCPQLEHLSLKRSNMA----QAVL--NCPLLHLLDIASCHK--LSD---AAIRLAA--TSCPQLESLDMSNCSCVS 136 (720)
Q Consensus 71 ~~-~~~~~L~~L~l~~~~~~----~~~~--~l~~L~~L~l~~~~~--l~~---~~l~~~~--~~l~~L~~L~l~~~~~l~ 136 (720)
++ ...++|++|++..+.+. ..+. .+++|++|+|+.+.. ..+ ..+...+ ..+++|++|++++|. +.
T Consensus 187 l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~ 265 (362)
T 2ra8_A 187 IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQ 265 (362)
T ss_dssp CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-TH
T ss_pred eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-Cc
Confidence 22 24789999999888775 2333 789999999863210 111 1122222 357899999999987 66
Q ss_pred hhhHHHHHH--hcCccceeeccCCC-------CCccccccCCcCcEEeccCCCCCchhhHHHhhccccccEEeccCCc
Q 005004 137 DESLREIAL--SCANLRILNSSYCP-------NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 205 (720)
Q Consensus 137 ~~~~~~~~~--~l~~L~~L~l~~~~-------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 205 (720)
+.....++. .+++|++|+++.|. .++..+..+++|+.|+++.| .+++.....+...- ...++++++.
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc-CCEEEecCCc
Confidence 655555653 46788888887764 12223345677888888774 67777666666521 3446666554
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=1.4e-08 Score=92.38 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=77.3
Q ss_pred CeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec----cCCCccEEeccCc
Q 005004 11 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSLKRS 86 (720)
Q Consensus 11 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~ 86 (720)
+.++++++.++. +|..+ .++|++|++++|.+.+..|..+.++++|++|++++|++..++. ++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 678889888864 45444 3789999999999877778888889999999999999888763 5789999999999
Q ss_pred chH----HHHhcCCCceEEeecccc
Q 005004 87 NMA----QAVLNCPLLHLLDIASCH 107 (720)
Q Consensus 87 ~~~----~~~~~l~~L~~L~l~~~~ 107 (720)
.+. ..+.++++|++|++++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 887 357889999999999986
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=1.2e-08 Score=92.73 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=76.3
Q ss_pred CcEEEeCCCccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccCcchH----HHHhcCCCceEEeecc
Q 005004 34 LKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIAS 105 (720)
Q Consensus 34 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~----~~~~~l~~L~~L~l~~ 105 (720)
-+.++++++.+ ..+|..+. ++|++|++++|++..++ .++++|++|++++|.+. ..+.++++|+.|++++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36899999988 56776543 78999999999998774 36899999999999887 4467899999999999
Q ss_pred ccCcchhhHHH-HhhcCCCCCEEEecCCC
Q 005004 106 CHKLSDAAIRL-AATSCPQLESLDMSNCS 133 (720)
Q Consensus 106 ~~~l~~~~l~~-~~~~l~~L~~L~l~~~~ 133 (720)
|. ++ .+|. .+..+++|++|++++|.
T Consensus 91 N~-l~--~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LK--SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CC--CCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cc--eeCHHHhccccCCCEEEeCCCC
Confidence 85 66 4444 47889999999999997
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.63 E-value=6.8e-08 Score=86.00 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhhcCCCCCeeecCCcccCChhHHHhccccccEE
Q 005004 411 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 490 (720)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 490 (720)
..|+.||+++|. +++.++.. +.+|++|++|++++|..+++.+...+..++ ..+++|++|
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-------------------~~~~~L~~L 119 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLE-------------------NLQKSMLEM 119 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCH-------------------HHHHHCCEE
T ss_pred ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcc-------------------cccCCCCEE
Confidence 468999999984 88877755 468888889999888888877776666531 012345555
Q ss_pred EcCCCCCCChhHHHHHHhcCCCCCcceeecCCC
Q 005004 491 KLQACKYLTNTSLESLYKKGSLPALQELDLSYG 523 (720)
Q Consensus 491 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~ 523 (720)
++++|..+++.+...+ ..+++|+.|++++|
T Consensus 120 ~Ls~C~~ITD~Gl~~L---~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 120 EIISCGNVTDKGIIAL---HHFRNLKYLFLSDL 149 (176)
T ss_dssp EEESCTTCCHHHHHHG---GGCTTCCEEEEESC
T ss_pred EcCCCCcCCHHHHHHH---hcCCCCCEEECCCC
Confidence 5555555555554444 34555555555554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=1e-07 Score=97.14 Aligned_cols=140 Identities=23% Similarity=0.291 Sum_probs=74.1
Q ss_pred ccccccCCCCccEEeccCCCCCcchhhhhhhccCCCccEEeecCCCCCCchhhHHhh--cCCCCCeeecCC--cc-----
Q 005004 403 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR--SLQNLTMLDLSY--TF----- 473 (720)
Q Consensus 403 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~--~~----- 473 (720)
+...+..+|+|+.|++++|..+. ++. + .+++|+.|++..|.+.. .+...+. .+|+|+.|+++. +.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred HHHHHhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccch
Confidence 33444556677777776652221 222 1 25667777776665432 2233333 567777776642 11
Q ss_pred -cCChhHHH--hccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccchHHHH---HHHhhCCCCcEEeccC
Q 005004 474 -LTNLEPVF--ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNG 547 (720)
Q Consensus 474 -~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~~~~~---~~l~~~~~L~~L~l~~ 547 (720)
+..+...+ ..+++|+.|.+.+|. +.+.....++....+++|+.|+++.|.+.+.... ..+..+++|+.|++++
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 11122222 246777777777666 5544333443334566777777777777653222 2234567777777776
Q ss_pred cc
Q 005004 548 CG 549 (720)
Q Consensus 548 ~~ 549 (720)
|.
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 64
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=5.1e-07 Score=82.84 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=47.5
Q ss_pred cCCCCCeeecCCcccCC-----hhHHHhccccccEEEcCCCCCCChhHHHHHH-hcCCCCCcceeec--CCCccchHH--
Q 005004 460 SLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTSLESLY-KKGSLPALQELDL--SYGTLCQSA-- 529 (720)
Q Consensus 460 ~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~~~L~~L~l--~~~~i~~~~-- 529 (720)
..++|++|++++|.+.+ +...+...++|++|++++|. +++.+...++ .+...++|++|++ ++|.+.+..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 34555555555555542 23344455566666666655 5555444432 2344556666666 556665532
Q ss_pred -HHHHHhhCCCCcEEeccCcc
Q 005004 530 -IEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 530 -~~~~l~~~~~L~~L~l~~~~ 549 (720)
+...+...++|++|++++|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeccCCC
Confidence 33444455666666666654
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=1.3e-07 Score=96.96 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=59.2
Q ss_pred eeecCCC-CCchhhHHhhhcCCCCcEEEeCC-CccCCcccccccccCCCcEEEcccccceeee----ccCCCccEEeccC
Q 005004 12 ALTLGRG-QLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 85 (720)
Q Consensus 12 ~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~ 85 (720)
.++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..+.++++|++|+|++|++..++ .++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566665 5654 454 66667777777764 6665444456666777777777777766654 2466777777777
Q ss_pred cchH----HHHhcCCCceEEeecccc
Q 005004 86 SNMA----QAVLNCPLLHLLDIASCH 107 (720)
Q Consensus 86 ~~~~----~~~~~l~~L~~L~l~~~~ 107 (720)
|.+. ..+..++ |+.|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCC
Confidence 7665 2333444 8888888775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=6.4e-07 Score=82.17 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=94.0
Q ss_pred ccccccCCCCccEEeccCCCCCcchhhh---hhhccCCCccEEeecCCCCCCchhh----HHhhcCCCCCeeecCCcccC
Q 005004 403 LSDAYINCPLLTSLDASFCSQLKDDCLS---ATTTSCPLIESLILMSCQSIGPDGL----YSLRSLQNLTMLDLSYTFLT 475 (720)
Q Consensus 403 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 475 (720)
+...+...+.|++|++++|+.+.+.... ..+...++|++|++++|.+.. .+. ..+...++|++|++++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-HHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445667889999999998566665433 345667899999999998654 333 34556789999999999998
Q ss_pred C-----hhHHHhccccccEEEc--CCCCCCChhHHHHHHh-cCCCCCcceeecCCCccchH
Q 005004 476 N-----LEPVFESCLQLKVLKL--QACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQS 528 (720)
Q Consensus 476 ~-----l~~~~~~~~~L~~L~l--~~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~~~i~~~ 528 (720)
+ +...+...++|++|++ ++|. +++.+...++. +...++|++|++++|.+...
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 4 4556788899999999 7776 88877665532 45678999999999998753
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=4.7e-06 Score=86.43 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred CCcCcEEeccCCCCCchhhHHHhhccccccEEeccC
Q 005004 168 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDN 203 (720)
Q Consensus 168 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~ 203 (720)
..+|+.+.+.. +++..+..++..+.+|+.+++..
T Consensus 45 ~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 45 RDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT
T ss_pred ccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC
Confidence 34566666654 56666666666666666666643
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=2.1e-06 Score=89.20 Aligned_cols=79 Identities=6% Similarity=0.035 Sum_probs=46.0
Q ss_pred cccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccceeeec---cCCCcc
Q 005004 3 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLE 79 (720)
Q Consensus 3 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~L~ 79 (720)
++....+|+.+.+.. .++.+...+|++|.+|+.++|..+ +...-..++.++ +|+.+.+..+ +..+.. ...+|+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 455667788888874 467777788888888888888654 432223445554 5666655432 333321 123555
Q ss_pred EEeccC
Q 005004 80 HLSLKR 85 (720)
Q Consensus 80 ~L~l~~ 85 (720)
.+.+..
T Consensus 117 ~i~lp~ 122 (379)
T 4h09_A 117 DFEFPG 122 (379)
T ss_dssp EEECCT
T ss_pred cccCCC
Confidence 555543
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=9.2e-07 Score=90.61 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=58.8
Q ss_pred EEEeCCC-ccCCcccccccccCCCcEEEccc-ccceeee----ccCCCccEEeccCcchH----HHHhcCCCceEEeecc
Q 005004 36 SLNVNDA-TLGNGVQEIPINHDQLRRLEITK-CRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIAS 105 (720)
Q Consensus 36 ~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~----~~~~~L~~L~l~~~~~~----~~~~~l~~L~~L~l~~ 105 (720)
.++++++ .+ ..+|. +..+++|++|+|++ |.+..++ .++++|++|+|++|.+. ..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l-~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCC-CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 55 34666 66677777777775 7776665 24677777777777665 4566777777777777
Q ss_pred ccCcchhhHHHHhhcCCCCCEEEecCCC
Q 005004 106 CHKLSDAAIRLAATSCPQLESLDMSNCS 133 (720)
Q Consensus 106 ~~~l~~~~l~~~~~~l~~L~~L~l~~~~ 133 (720)
|. ++ .+|..+.....|+.|++.+|.
T Consensus 90 N~-l~--~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NA-LE--SLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SC-CS--CCCSTTTCSCCCCEEECCSSC
T ss_pred Cc-cc--eeCHHHcccCCceEEEeeCCC
Confidence 64 55 344332222237777777776
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=2.5e-06 Score=82.16 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=65.3
Q ss_pred ccccCcCCe--eecCCCCCc---hhhHHhhhcCCCCcEEEeCCCccCC--cccccccccCCCcEEEcccccceeeeccCC
Q 005004 4 VSLLRNLEA--LTLGRGQLG---DAFFHALADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMRVSIRCP 76 (720)
Q Consensus 4 ~~~~~~L~~--L~l~~~~i~---~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 76 (720)
|...+.|+. ++++.|... +.......++++|++|+|++|.+.+ .++..+..+++|++|+|++|.+..+. .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~-- 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-E-- 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-G--
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-h--
Confidence 444455554 666766432 2223333578899999999998865 45566667888888888888877542 0
Q ss_pred CccEEeccCcchHHHHhcCCCceEEeeccccCcch------hhHHHHhhcCCCCCEEEe
Q 005004 77 QLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSD------AAIRLAATSCPQLESLDM 129 (720)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~------~~l~~~~~~l~~L~~L~l 129 (720)
+ ..+..+ +|++|++.+|+ +.. ......+..+++|+.|+=
T Consensus 214 -----------l-~~l~~l-~L~~L~L~~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 214 -----------L-DKIKGL-KLEELWLDGNS-LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -----------G-GGGTTS-CCSEEECTTST-TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred -----------h-hhcccC-CcceEEccCCc-CccccCcchhHHHHHHHHCcccCeECC
Confidence 0 111222 56666666664 331 122345677777777763
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=0.00059 Score=61.87 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=79.3
Q ss_pred hhhhhccCCCccEEeecCCCCCCchhh----HHhhcCCCCCeeecCCcccCC-----hhHHHhccccccEEEcCCCCCCC
Q 005004 429 LSATTTSCPLIESLILMSCQSIGPDGL----YSLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLT 499 (720)
Q Consensus 429 ~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~ 499 (720)
+......-+.|+.|++++++.+.+.+. ..+..-+.|+.|++++|.+.+ +...+..-+.|+.|+|++|. |.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 344445556677777766533444332 334556778888888887763 55567777888888888877 88
Q ss_pred hhHHHHHH-hcCCCCCcceeecCCC---ccchH---HHHHHHhhCCCCcEEeccCcc
Q 005004 500 NTSLESLY-KKGSLPALQELDLSYG---TLCQS---AIEELLAYCTHLTHVSLNGCG 549 (720)
Q Consensus 500 ~~~~~~l~-~~~~~~~L~~L~l~~~---~i~~~---~~~~~l~~~~~L~~L~l~~~~ 549 (720)
+.+...++ ++..-++|++|++++| .+.+. .+...+..-++|++|+++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 77766653 3566677888888764 44542 355667777888888887653
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=7.7e-05 Score=71.77 Aligned_cols=84 Identities=26% Similarity=0.355 Sum_probs=54.0
Q ss_pred hcCCCCCeeecCCcccCChh---HHHhccccccEEEcCCCCCCChhHHHHHHhcCCCCCcceeecCCCccch------HH
Q 005004 459 RSLQNLTMLDLSYTFLTNLE---PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ------SA 529 (720)
Q Consensus 459 ~~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~i~~------~~ 529 (720)
..+++|+.|++++|++.+++ ..+..+++|+.|+|++|. +++. ..+..+..+ +|++|++++|.+++ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc--hhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 35667777777777776543 355677777777777766 6554 223223344 78888888887764 23
Q ss_pred HHHHHhhCCCCcEEecc
Q 005004 530 IEELLAYCTHLTHVSLN 546 (720)
Q Consensus 530 ~~~~l~~~~~L~~L~l~ 546 (720)
....+..+|+|+.||=.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 34567788888888644
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.06 E-value=0.0017 Score=58.76 Aligned_cols=123 Identities=12% Similarity=0.132 Sum_probs=87.6
Q ss_pred ccccCCCCccEEeccCCCCCcchhhhh---hhccCCCccEEeecCCCCCCchh---hHHhhcCCCCCeeecCCcccCC--
Q 005004 405 DAYINCPLLTSLDASFCSQLKDDCLSA---TTTSCPLIESLILMSCQSIGPDG---LYSLRSLQNLTMLDLSYTFLTN-- 476 (720)
Q Consensus 405 ~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-- 476 (720)
..+..-+.|++|+|+++..+.+.+... .+..-..|+.|++++|.+..... ...+..-+.|++|+|++|.|..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 344556889999999865777655443 34556789999999998654221 2445677899999999999984
Q ss_pred ---hhHHHhccccccEEEcCCCC--CCChhHHHHHH-hcCCCCCcceeecCCCccch
Q 005004 477 ---LEPVFESCLQLKVLKLQACK--YLTNTSLESLY-KKGSLPALQELDLSYGTLCQ 527 (720)
Q Consensus 477 ---l~~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~-~~~~~~~L~~L~l~~~~i~~ 527 (720)
+...+..-+.|++|++++|. .+.+.....++ .+..-++|+.|+++.+.+..
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 44466667889999998753 46665544442 24567899999999886643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.05 E-value=0.011 Score=49.78 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=46.4
Q ss_pred chh--hhhhcCC-cccEEEeecccCChhhHHHHHhcCCCcceEeccCCcCCCchhHHHHH
Q 005004 648 SLE--TLKLDCP-KLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLR 704 (720)
Q Consensus 648 ~L~--~l~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 704 (720)
+|+ .++..+| +|++|+|++|.|+ ..-+..|..+++|+.|+|++||..+++.+.++.
T Consensus 19 ~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 19 GLTWASLPTAFPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp CCCTTTSCSCCCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred CCccccCCCCCCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccCccHHHH
Confidence 455 7776665 7999999999986 444567889999999999999999999887775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.29 E-value=0.085 Score=44.30 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=40.0
Q ss_pred CeeecCCCCCc-hhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEcccccce
Q 005004 11 EALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM 69 (720)
Q Consensus 11 ~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 69 (720)
+.++-+++.++ ..+|..+ -++|++|+|++|.+...-+..+..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 2344332 236888999998886544566777888999999888875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.48 E-value=4.6 Score=31.64 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=24.1
Q ss_pred CCchhhHHhhhcCCCCcEEEeCCCccCCcccccccccCCCcEEEccc
Q 005004 19 QLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 65 (720)
Q Consensus 19 ~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 65 (720)
.++.+...+|.+|..|+.+.|..+ +...-..+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444455556666666666666543 2222234455566666665554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.70 E-value=9.3 Score=29.85 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=33.4
Q ss_pred ccccccCcCCeeecCCCCCchhhHHhhhcCCCCcEEEeCCC
Q 005004 2 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDA 42 (720)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 42 (720)
.+|..|++|+.+.+.. .++.+...+|.+|.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 4688899999999986 477778889999999999998754
Done!