Query 005005
Match_columns 720
No_of_seqs 204 out of 1128
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 16:30:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 5E-196 1E-200 1666.3 60.6 681 1-720 1-689 (977)
2 PF08323 Glyco_transf_5: Starc 100.0 1.2E-48 2.6E-53 391.6 12.7 196 513-720 1-211 (245)
3 PRK14099 glycogen synthase; Pr 100.0 1E-43 2.2E-48 386.7 19.2 194 510-719 2-204 (485)
4 PRK14098 glycogen synthase; Pr 100.0 2.3E-43 4.9E-48 384.3 19.7 201 508-720 2-216 (489)
5 TIGR02095 glgA glycogen/starch 100.0 1.5E-39 3.2E-44 347.6 19.6 196 512-719 1-200 (473)
6 PLN02316 synthase/transferase 100.0 7.3E-40 1.6E-44 382.1 16.7 232 440-684 505-753 (1036)
7 PRK00654 glgA glycogen synthas 100.0 7.3E-39 1.6E-43 343.7 18.6 190 512-719 1-192 (466)
8 COG0297 GlgA Glycogen synthase 100.0 2.1E-38 4.6E-43 347.6 16.9 198 512-720 1-204 (487)
9 cd03791 GT1_Glycogen_synthase_ 100.0 1.4E-36 3E-41 321.7 20.5 200 513-719 1-205 (476)
10 TIGR02094 more_P_ylases alpha- 99.9 2.5E-24 5.4E-29 242.0 17.1 204 514-720 1-258 (601)
11 cd04299 GT1_Glycogen_Phosphory 99.9 3.5E-23 7.6E-28 238.1 18.3 205 513-720 87-347 (778)
12 TIGR02472 sucr_P_syn_N sucrose 99.1 2.8E-09 6E-14 114.7 15.3 136 512-680 1-148 (439)
13 TIGR03449 mycothiol_MshA UDP-N 98.9 8.8E-09 1.9E-13 107.2 12.7 129 514-680 1-135 (405)
14 PF13579 Glyco_trans_4_4: Glyc 98.9 7.5E-09 1.6E-13 91.2 10.2 107 528-681 1-108 (160)
15 TIGR02468 sucrsPsyn_pln sucros 98.9 3E-08 6.6E-13 118.5 15.6 155 505-679 163-343 (1050)
16 PRK10307 putative glycosyl tra 98.8 8.3E-08 1.8E-12 101.1 14.7 137 512-680 1-142 (412)
17 TIGR02470 sucr_synth sucrose s 98.7 1.1E-07 2.3E-12 111.4 13.0 191 446-680 203-419 (784)
18 cd03800 GT1_Sucrose_synthase T 98.7 1.2E-07 2.7E-12 96.4 11.8 130 513-680 1-135 (398)
19 cd03796 GT1_PIG-A_like This fa 98.7 2.4E-07 5.2E-12 97.6 13.2 123 513-679 1-123 (398)
20 cd03802 GT1_AviGT4_like This f 98.6 5E-07 1.1E-11 89.8 12.8 45 512-556 1-47 (335)
21 TIGR02149 glgA_Coryne glycogen 98.5 9.8E-07 2.1E-11 90.7 11.9 41 512-554 1-41 (388)
22 PLN02871 UDP-sulfoquinovose:DA 98.5 1.2E-06 2.5E-11 95.2 12.9 46 509-555 56-101 (465)
23 cd04962 GT1_like_5 This family 98.5 1.4E-06 2.9E-11 88.5 12.1 39 512-555 1-39 (371)
24 cd03794 GT1_wbuB_like This fam 98.4 3E-06 6.6E-11 82.9 13.3 133 513-679 1-134 (394)
25 cd03793 GT1_Glycogen_synthase_ 98.4 4.9E-07 1.1E-11 103.0 8.0 154 517-680 7-183 (590)
26 cd03805 GT1_ALG2_like This fam 98.4 3.2E-06 6.9E-11 87.1 12.7 41 512-556 1-41 (392)
27 PLN00142 sucrose synthase 98.3 1.5E-06 3.3E-11 102.3 10.0 192 446-680 227-442 (815)
28 PF13439 Glyco_transf_4: Glyco 98.3 7.1E-06 1.5E-10 73.6 11.3 104 526-681 10-113 (177)
29 PRK10125 putative glycosyl tra 98.3 2.6E-06 5.7E-11 92.1 8.9 132 512-687 1-145 (405)
30 cd04951 GT1_WbdM_like This fam 98.2 8.7E-06 1.9E-10 81.4 11.6 117 513-683 1-117 (360)
31 PF13477 Glyco_trans_4_2: Glyc 98.2 1.6E-05 3.4E-10 71.4 11.4 109 513-681 1-111 (139)
32 PRK00726 murG undecaprenyldiph 98.2 2.2E-05 4.7E-10 81.3 13.0 121 511-679 1-124 (357)
33 cd04955 GT1_like_6 This family 98.2 3.5E-05 7.6E-10 77.4 13.8 42 513-555 1-42 (363)
34 cd03823 GT1_ExpE7_like This fa 98.1 3.6E-05 7.8E-10 75.7 12.1 43 513-556 1-43 (359)
35 cd03801 GT1_YqgM_like This fam 98.1 7.4E-05 1.6E-09 72.0 13.6 43 513-557 1-43 (374)
36 cd03825 GT1_wcfI_like This fam 98.0 1.3E-05 2.9E-10 80.3 8.0 39 512-554 1-39 (365)
37 cd03807 GT1_WbnK_like This fam 98.0 3.3E-05 7.1E-10 75.4 10.4 117 513-682 1-117 (365)
38 cd03817 GT1_UGDG_like This fam 98.0 6.8E-05 1.5E-09 73.7 11.2 44 513-558 1-44 (374)
39 cd03819 GT1_WavL_like This fam 97.9 6.5E-05 1.4E-09 75.5 10.8 110 522-681 4-113 (355)
40 cd03821 GT1_Bme6_like This fam 97.9 8.6E-05 1.9E-09 72.8 11.2 42 513-556 1-42 (375)
41 cd01635 Glycosyltransferase_GT 97.9 8.6E-05 1.9E-09 68.5 9.5 37 514-552 1-37 (229)
42 TIGR01133 murG undecaprenyldip 97.8 0.00021 4.6E-09 72.9 12.5 38 512-555 1-38 (348)
43 cd03792 GT1_Trehalose_phosphor 97.8 5.7E-05 1.2E-09 78.6 8.5 38 513-554 1-38 (372)
44 PLN02846 digalactosyldiacylgly 97.8 4.7E-05 1E-09 85.1 8.1 46 510-557 3-49 (462)
45 cd03808 GT1_cap1E_like This fa 97.8 0.00049 1.1E-08 66.9 13.2 118 513-683 1-118 (359)
46 cd03818 GT1_ExpC_like This fam 97.7 0.00037 8E-09 73.6 13.2 113 513-676 1-116 (396)
47 cd03822 GT1_ecORF704_like This 97.7 0.00026 5.7E-09 70.3 10.5 40 513-555 1-40 (366)
48 COG0058 GlgP Glucan phosphoryl 97.7 0.00017 3.8E-09 84.5 10.0 170 520-691 108-326 (750)
49 cd03809 GT1_mtfB_like This fam 97.6 0.00022 4.7E-09 70.8 9.0 45 513-558 1-45 (365)
50 cd03785 GT1_MurG MurG is an N- 97.6 0.0006 1.3E-08 69.8 11.9 118 514-679 2-122 (350)
51 cd03795 GT1_like_4 This family 97.6 0.00054 1.2E-08 68.6 11.3 41 513-555 1-41 (357)
52 cd03812 GT1_CapH_like This fam 97.6 0.00047 1E-08 69.5 10.5 40 513-556 1-40 (358)
53 TIGR02169 SMC_prok_A chromosom 97.6 0.047 1E-06 65.3 28.6 54 132-185 675-728 (1164)
54 cd03814 GT1_like_2 This family 97.6 0.00057 1.2E-08 67.7 10.6 42 513-556 1-42 (364)
55 TIGR02168 SMC_prok_B chromosom 97.5 0.072 1.6E-06 63.4 28.4 17 353-369 968-984 (1179)
56 PRK02224 chromosome segregatio 97.5 0.074 1.6E-06 63.0 28.3 119 245-366 414-553 (880)
57 cd03820 GT1_amsD_like This fam 97.5 0.0011 2.4E-08 64.1 11.2 41 513-556 1-41 (348)
58 PRK02224 chromosome segregatio 97.5 0.056 1.2E-06 64.0 27.3 34 157-190 188-223 (880)
59 TIGR00606 rad50 rad50. This fa 97.4 0.061 1.3E-06 67.1 28.4 140 133-313 767-906 (1311)
60 cd03798 GT1_wlbH_like This fam 97.4 0.0019 4E-08 63.0 12.2 42 514-556 1-42 (377)
61 PHA02562 46 endonuclease subun 97.4 0.038 8.2E-07 61.8 23.9 62 246-307 216-281 (562)
62 PF15070 GOLGA2L5: Putative go 97.4 0.023 4.9E-07 66.2 22.7 193 170-406 19-227 (617)
63 TIGR02168 SMC_prok_B chromosom 97.4 0.17 3.6E-06 60.4 30.2 57 131-187 670-726 (1179)
64 PF05693 Glycogen_syn: Glycoge 97.3 0.00022 4.8E-09 82.1 5.4 153 517-679 2-177 (633)
65 cd03811 GT1_WabH_like This fam 97.3 0.0017 3.6E-08 62.9 10.4 40 513-556 1-40 (353)
66 PRK09922 UDP-D-galactose:(gluc 97.3 0.0013 2.8E-08 68.8 10.2 42 512-556 1-44 (359)
67 cd03799 GT1_amsK_like This is 97.3 0.0022 4.7E-08 64.3 11.1 39 513-556 1-39 (355)
68 TIGR02169 SMC_prok_A chromosom 97.3 0.13 2.8E-06 61.7 27.5 38 385-422 955-992 (1164)
69 PRK15484 lipopolysaccharide 1, 97.2 0.0017 3.8E-08 69.1 10.5 124 512-679 3-131 (380)
70 PRK03918 chromosome segregatio 97.2 0.2 4.3E-06 59.3 28.0 21 409-429 455-475 (880)
71 PF09314 DUF1972: Domain of un 97.2 0.0072 1.6E-07 60.8 13.9 128 511-683 1-132 (185)
72 cd03816 GT1_ALG1_like This fam 97.1 0.0071 1.5E-07 65.4 13.3 38 512-555 4-41 (415)
73 PF07888 CALCOCO1: Calcium bin 97.0 0.15 3.3E-06 58.8 23.5 178 247-427 203-403 (546)
74 TIGR00606 rad50 rad50. This fa 97.0 0.17 3.8E-06 63.2 25.8 167 249-426 791-961 (1311)
75 KOG0933 Structural maintenance 97.0 0.11 2.3E-06 63.2 22.4 254 156-456 674-932 (1174)
76 cd04300 GT1_Glycogen_Phosphory 96.9 0.01 2.3E-07 70.6 13.4 173 519-691 98-362 (797)
77 COG1196 Smc Chromosome segrega 96.9 1 2.2E-05 56.1 30.4 61 435-495 961-1021(1163)
78 cd05844 GT1_like_7 Glycosyltra 96.8 0.0041 8.9E-08 63.3 8.4 36 513-555 1-36 (367)
79 COG1196 Smc Chromosome segrega 96.8 1.5 3.2E-05 54.7 31.2 30 383-412 886-915 (1163)
80 PRK03918 chromosome segregatio 96.8 1.3 2.7E-05 52.7 29.2 13 670-682 845-857 (880)
81 PRK14985 maltodextrin phosphor 96.7 0.0092 2E-07 71.0 11.5 174 518-691 103-364 (798)
82 PF00038 Filament: Intermediat 96.7 0.54 1.2E-05 49.3 23.3 164 161-368 63-234 (312)
83 KOG4643 Uncharacterized coiled 96.7 0.37 7.9E-06 58.8 24.2 186 249-441 263-504 (1195)
84 PRK15427 colanic acid biosynth 96.6 0.011 2.3E-07 64.2 9.7 38 512-554 1-38 (406)
85 PRK14986 glycogen phosphorylas 96.6 0.012 2.7E-07 70.1 11.0 72 620-691 280-375 (815)
86 TIGR02093 P_ylase glycogen/sta 96.5 0.01 2.3E-07 70.5 9.8 173 519-691 95-359 (794)
87 KOG0161 Myosin class II heavy 96.5 0.44 9.5E-06 61.9 24.0 135 278-420 1762-1896(1930)
88 PRK11637 AmiB activator; Provi 96.5 0.36 7.7E-06 53.4 20.7 84 130-216 46-129 (428)
89 PF10174 Cast: RIM-binding pro 96.4 0.49 1.1E-05 56.9 23.0 256 157-423 112-388 (775)
90 PHA02562 46 endonuclease subun 96.4 1.9 4.2E-05 48.4 26.2 19 536-554 517-536 (562)
91 KOG0161 Myosin class II heavy 96.4 2.1 4.6E-05 56.0 29.0 115 243-367 978-1114(1930)
92 PF07888 CALCOCO1: Calcium bin 96.3 1.6 3.5E-05 50.8 25.3 40 403-448 421-464 (546)
93 PF12128 DUF3584: Protein of u 96.3 2.3 4.9E-05 53.4 28.2 153 245-403 322-484 (1201)
94 KOG0971 Microtubule-associated 96.2 2.6 5.7E-05 51.4 26.8 197 197-445 339-566 (1243)
95 KOG0996 Structural maintenance 96.1 2.2 4.8E-05 53.2 26.3 61 115-177 240-306 (1293)
96 PRK01156 chromosome segregatio 96.1 2.7 5.9E-05 50.5 26.9 39 388-426 594-632 (895)
97 TIGR03185 DNA_S_dndD DNA sulfu 96.1 0.9 2E-05 53.0 22.3 44 266-309 375-419 (650)
98 TIGR03088 stp2 sugar transfera 96.0 0.029 6.4E-07 58.2 9.0 37 512-552 2-38 (374)
99 PRK04778 septation ring format 95.8 2.2 4.9E-05 49.3 23.8 156 247-406 314-473 (569)
100 KOG1111 N-acetylglucosaminyltr 95.8 0.023 4.9E-07 62.8 7.3 121 512-679 1-124 (426)
101 PRK15179 Vi polysaccharide bio 95.7 0.14 2.9E-06 60.7 13.8 37 506-546 275-312 (694)
102 PLN02275 transferase, transfer 95.7 0.094 2E-06 55.8 11.5 26 528-553 15-41 (371)
103 PF15070 GOLGA2L5: Putative go 95.6 4.4 9.4E-05 47.9 25.3 242 147-431 24-304 (617)
104 PRK13609 diacylglycerol glucos 95.6 0.014 3E-07 61.6 4.8 43 510-557 3-45 (380)
105 PF00261 Tropomyosin: Tropomyo 95.6 3.4 7.5E-05 42.6 25.6 74 142-215 12-85 (237)
106 PRK01156 chromosome segregatio 95.5 7.3 0.00016 47.0 27.3 26 404-429 467-492 (895)
107 TIGR03185 DNA_S_dndD DNA sulfu 95.5 3.4 7.4E-05 48.4 24.0 28 343-370 391-418 (650)
108 KOG0996 Structural maintenance 95.4 1.1 2.5E-05 55.5 20.2 86 130-215 784-876 (1293)
109 PF05701 WEMBL: Weak chloropla 95.4 5.7 0.00012 45.7 25.0 47 132-178 35-81 (522)
110 PF09726 Macoilin: Transmembra 95.4 1.3 2.8E-05 52.8 20.2 93 201-304 422-518 (697)
111 PF12718 Tropomyosin_1: Tropom 95.3 0.54 1.2E-05 45.6 14.1 97 313-409 1-101 (143)
112 KOG4674 Uncharacterized conser 95.2 6.1 0.00013 51.6 26.3 176 247-431 1001-1203(1822)
113 KOG4673 Transcription factor T 95.0 2 4.4E-05 51.0 19.8 104 318-427 543-658 (961)
114 PRK04778 septation ring format 95.0 9.2 0.0002 44.4 26.4 297 117-426 65-393 (569)
115 KOG4674 Uncharacterized conser 95.0 10 0.00023 49.6 27.2 261 127-426 1208-1486(1822)
116 PF06160 EzrA: Septation ring 94.9 4.4 9.5E-05 47.0 22.2 294 117-431 61-394 (560)
117 PF05622 HOOK: HOOK protein; 94.8 0.0079 1.7E-07 70.4 0.0 202 160-396 201-406 (713)
118 KOG0250 DNA repair protein RAD 94.7 16 0.00034 45.8 27.3 70 139-219 208-277 (1074)
119 COG0419 SbcC ATPase involved i 94.7 12 0.00026 45.7 26.1 106 262-367 272-378 (908)
120 PF10174 Cast: RIM-binding pro 94.7 3.4 7.4E-05 50.0 21.1 161 245-429 324-488 (775)
121 KOG0612 Rho-associated, coiled 94.7 9.8 0.00021 48.0 25.0 125 281-406 563-692 (1317)
122 PF12128 DUF3584: Protein of u 94.7 17 0.00038 45.9 29.1 52 131-182 614-665 (1201)
123 PF05557 MAD: Mitotic checkpoi 94.6 0.42 9.1E-06 56.4 13.3 159 244-423 462-641 (722)
124 PRK04863 mukB cell division pr 94.5 12 0.00026 48.5 26.4 57 371-431 432-488 (1486)
125 TIGR01005 eps_transp_fam exopo 94.4 8.3 0.00018 45.7 23.2 37 510-552 544-582 (754)
126 PF05622 HOOK: HOOK protein; 94.3 0.012 2.5E-07 69.0 0.0 177 245-429 195-386 (713)
127 PF15294 Leu_zip: Leucine zipp 94.3 5.9 0.00013 42.9 19.9 87 243-340 125-211 (278)
128 PRK09039 hypothetical protein; 94.3 0.98 2.1E-05 49.4 14.5 41 248-298 65-105 (343)
129 PRK11637 AmiB activator; Provi 94.3 3.9 8.4E-05 45.5 19.2 15 203-217 123-137 (428)
130 KOG0964 Structural maintenance 94.2 8.4 0.00018 47.7 22.6 267 129-412 676-973 (1200)
131 PF05557 MAD: Mitotic checkpoi 94.2 0.013 2.9E-07 68.6 0.0 160 263-426 287-467 (722)
132 KOG0976 Rho/Rac1-interacting s 93.9 14 0.0003 45.2 23.3 88 166-274 120-207 (1265)
133 PF12718 Tropomyosin_1: Tropom 93.9 5.1 0.00011 39.0 17.0 77 326-402 49-129 (143)
134 COG3883 Uncharacterized protei 93.7 3.2 7E-05 44.5 16.5 171 128-311 21-192 (265)
135 cd03784 GT1_Gtf_like This fami 93.7 0.39 8.5E-06 50.9 9.8 36 512-555 1-38 (401)
136 TIGR00634 recN DNA repair prot 93.7 12 0.00025 43.4 22.1 23 384-406 349-371 (563)
137 PF04849 HAP1_N: HAP1 N-termin 93.6 4 8.6E-05 44.6 17.1 136 245-406 162-301 (306)
138 KOG0980 Actin-binding protein 93.5 25 0.00054 43.4 27.3 124 169-337 361-484 (980)
139 PRK04863 mukB cell division pr 93.3 8.8 0.00019 49.7 22.1 151 153-321 280-430 (1486)
140 PLN03229 acetyl-coenzyme A car 93.3 2.2 4.9E-05 51.1 15.8 147 197-365 429-612 (762)
141 KOG0994 Extracellular matrix g 93.2 12 0.00026 47.3 21.7 30 187-216 1492-1523(1758)
142 KOG4643 Uncharacterized coiled 93.2 30 0.00065 43.3 25.5 107 306-413 395-513 (1195)
143 KOG0249 LAR-interacting protei 93.1 4.4 9.6E-05 48.6 17.6 152 252-422 134-285 (916)
144 COG0419 SbcC ATPase involved i 92.9 29 0.00063 42.4 27.8 27 150-176 169-195 (908)
145 KOG0995 Centromere-associated 92.8 4.6 9.9E-05 47.3 16.9 154 244-421 229-393 (581)
146 PRK00025 lpxB lipid-A-disaccha 92.7 0.5 1.1E-05 49.7 8.8 36 511-553 1-36 (380)
147 PF15397 DUF4618: Domain of un 92.6 5.9 0.00013 42.4 16.3 163 263-451 62-236 (258)
148 TIGR02680 conserved hypothetic 92.5 19 0.00042 46.1 23.5 52 626-679 1262-1316(1353)
149 KOG0933 Structural maintenance 92.5 20 0.00043 44.8 22.2 84 243-329 294-377 (1174)
150 KOG0018 Structural maintenance 92.5 37 0.00081 42.7 24.9 217 159-428 669-903 (1141)
151 TIGR03007 pepcterm_ChnLen poly 92.5 11 0.00024 42.3 19.2 15 201-215 165-179 (498)
152 PF01496 V_ATPase_I: V-type AT 92.0 0.46 9.9E-06 56.3 8.2 137 325-476 152-311 (759)
153 PF09787 Golgin_A5: Golgin sub 91.9 9.6 0.00021 43.8 18.3 41 360-400 252-300 (511)
154 TIGR01843 type_I_hlyD type I s 91.8 12 0.00025 40.3 17.8 28 248-275 79-106 (423)
155 PF05701 WEMBL: Weak chloropla 91.7 30 0.00066 40.0 24.7 129 252-406 297-425 (522)
156 PF14662 CCDC155: Coiled-coil 91.6 6.9 0.00015 40.4 14.9 109 247-361 26-141 (193)
157 PF05667 DUF812: Protein of un 91.6 24 0.00052 41.8 21.3 38 392-431 472-509 (594)
158 TIGR03007 pepcterm_ChnLen poly 91.6 2.6 5.5E-05 47.2 13.1 38 326-363 331-368 (498)
159 PF13514 AAA_27: AAA domain 91.5 29 0.00064 43.4 23.0 23 627-649 1069-1093(1111)
160 PF05667 DUF812: Protein of un 91.0 40 0.00086 40.1 25.5 110 247-370 423-532 (594)
161 cd03806 GT1_ALG11_like This fa 91.0 1 2.2E-05 49.4 9.1 37 521-557 6-45 (419)
162 PRK10929 putative mechanosensi 91.0 55 0.0012 41.7 25.4 43 277-320 169-211 (1109)
163 COG1579 Zn-ribbon protein, pos 90.9 13 0.00027 39.6 16.5 45 324-368 129-174 (239)
164 PF04912 Dynamitin: Dynamitin 90.9 13 0.00028 41.2 17.4 137 271-421 206-365 (388)
165 PF00862 Sucrose_synth: Sucros 90.8 24 0.00051 41.4 19.7 196 446-680 220-435 (550)
166 KOG0978 E3 ubiquitin ligase in 90.7 29 0.00062 42.0 20.8 165 247-430 458-625 (698)
167 KOG4809 Rab6 GTPase-interactin 90.7 13 0.00028 43.7 17.4 135 247-401 328-462 (654)
168 PLN02939 transferase, transfer 90.6 8 0.00017 48.0 16.7 54 351-404 294-347 (977)
169 KOG0971 Microtubule-associated 90.3 6.2 0.00013 48.5 15.0 119 269-402 480-598 (1243)
170 TIGR01843 type_I_hlyD type I s 90.2 9.1 0.0002 41.1 15.2 15 544-558 326-340 (423)
171 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.0 8.4 0.00018 36.6 13.1 127 251-393 4-131 (132)
172 COG5185 HEC1 Protein involved 89.9 11 0.00023 43.7 15.8 101 240-343 261-361 (622)
173 KOG0250 DNA repair protein RAD 89.8 22 0.00048 44.5 19.4 148 249-407 733-897 (1074)
174 PF13851 GAS: Growth-arrest sp 89.8 11 0.00023 38.7 14.5 28 382-409 144-171 (201)
175 KOG4360 Uncharacterized coiled 89.8 27 0.00059 40.9 18.9 158 246-406 162-347 (596)
176 TIGR03017 EpsF chain length de 89.6 4.2 9.1E-05 44.7 12.4 39 326-364 318-356 (444)
177 PLN03229 acetyl-coenzyme A car 89.4 22 0.00047 43.2 18.5 42 170-216 433-474 (762)
178 PF08317 Spc7: Spc7 kinetochor 89.4 6.8 0.00015 42.4 13.4 49 138-186 122-176 (325)
179 KOG0978 E3 ubiquitin ligase in 89.4 59 0.0013 39.5 24.8 193 135-354 336-531 (698)
180 PF08317 Spc7: Spc7 kinetochor 89.3 9.3 0.0002 41.3 14.5 82 247-337 153-234 (325)
181 PRK11281 hypothetical protein; 89.3 27 0.00058 44.3 20.0 39 281-320 192-230 (1113)
182 KOG0977 Nuclear envelope prote 89.2 39 0.00085 39.9 19.9 153 245-404 164-326 (546)
183 KOG0963 Transcription factor/C 88.9 41 0.0009 40.1 19.9 114 171-312 233-347 (629)
184 KOG0999 Microtubule-associated 88.6 54 0.0012 39.0 20.2 245 165-466 7-285 (772)
185 PF09728 Taxilin: Myosin-like 88.5 42 0.0009 36.6 23.5 122 293-424 112-234 (309)
186 PRK09039 hypothetical protein; 88.4 17 0.00037 40.0 15.8 67 353-426 112-178 (343)
187 COG4942 Membrane-bound metallo 88.0 56 0.0012 37.5 20.2 73 138-213 38-110 (420)
188 PF09789 DUF2353: Uncharacteri 87.8 49 0.0011 36.6 20.9 191 245-475 67-282 (319)
189 KOG0979 Structural maintenance 87.7 34 0.00075 42.8 18.9 217 159-405 174-391 (1072)
190 PF14915 CCDC144C: CCDC144C pr 87.6 49 0.0011 36.5 20.7 65 363-434 210-274 (305)
191 PF10186 Atg14: UV radiation r 87.2 7 0.00015 40.1 11.4 27 624-652 262-288 (302)
192 KOG0976 Rho/Rac1-interacting s 86.9 49 0.0011 40.9 19.0 50 249-298 315-368 (1265)
193 KOG4302 Microtubule-associated 86.8 82 0.0018 38.1 21.2 70 378-457 309-384 (660)
194 PRK09841 cryptic autophosphory 86.8 79 0.0017 38.0 22.3 37 509-551 528-566 (726)
195 COG4717 Uncharacterized conser 86.7 77 0.0017 39.5 20.7 233 159-412 557-801 (984)
196 cd03788 GT1_TPS Trehalose-6-Ph 86.5 1.8 3.8E-05 48.5 7.2 57 618-679 109-165 (460)
197 KOG0243 Kinesin-like protein [ 86.5 25 0.00054 44.1 17.0 23 409-431 628-650 (1041)
198 cd07647 F-BAR_PSTPIP The F-BAR 86.4 31 0.00068 35.6 15.6 154 247-416 57-224 (239)
199 TIGR01005 eps_transp_fam exopo 86.3 16 0.00034 43.4 15.1 60 286-345 343-402 (754)
200 PRK11281 hypothetical protein; 86.0 1.1E+02 0.0025 39.0 24.3 39 372-410 395-433 (1113)
201 PF09787 Golgin_A5: Golgin sub 85.8 74 0.0016 36.8 21.8 79 250-335 274-353 (511)
202 PF15619 Lebercilin: Ciliary p 85.7 23 0.00049 36.3 13.9 29 248-276 24-52 (194)
203 KOG0977 Nuclear envelope prote 85.6 50 0.0011 39.0 18.2 82 251-344 57-138 (546)
204 PF08288 PIGA: PIGA (GPI ancho 85.6 2 4.3E-05 39.5 5.7 38 638-679 48-85 (90)
205 cd00176 SPEC Spectrin repeats, 85.5 24 0.00052 33.1 13.2 38 249-286 32-69 (213)
206 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.3 8 0.00017 36.7 9.9 56 249-304 58-114 (132)
207 TIGR01000 bacteriocin_acc bact 85.3 44 0.00096 37.6 17.3 29 247-275 94-122 (457)
208 smart00787 Spc7 Spc7 kinetocho 85.3 22 0.00049 38.8 14.5 78 249-336 203-281 (312)
209 cd07627 BAR_Vps5p The Bin/Amph 85.3 47 0.001 33.9 18.9 81 348-428 113-198 (216)
210 KOG0999 Microtubule-associated 85.1 20 0.00044 42.3 14.6 41 316-356 198-245 (772)
211 PF05010 TACC: Transforming ac 84.9 53 0.0011 34.3 16.6 33 393-425 141-173 (207)
212 TIGR02680 conserved hypothetic 84.2 1.4E+02 0.0031 38.7 29.1 113 166-308 276-388 (1353)
213 PF15619 Lebercilin: Ciliary p 84.1 46 0.001 34.1 15.3 51 352-402 141-192 (194)
214 PRK12446 undecaprenyldiphospho 84.0 15 0.00032 39.9 12.5 29 528-556 9-40 (352)
215 TIGR00236 wecB UDP-N-acetylglu 83.9 3.8 8.1E-05 43.3 7.8 51 621-679 69-120 (365)
216 KOG0612 Rho-associated, coiled 83.6 21 0.00046 45.3 14.7 160 272-432 492-693 (1317)
217 PF04012 PspA_IM30: PspA/IM30 83.4 29 0.00063 35.1 13.5 101 291-404 26-135 (221)
218 PF01576 Myosin_tail_1: Myosin 83.1 0.37 8E-06 58.3 0.0 147 247-399 423-592 (859)
219 TIGR03017 EpsF chain length de 83.0 70 0.0015 35.4 17.3 42 352-397 256-298 (444)
220 KOG3156 Uncharacterized membra 82.9 6.9 0.00015 41.0 8.9 141 125-345 56-200 (220)
221 COG4942 Membrane-bound metallo 82.9 25 0.00054 40.2 14.0 53 130-182 58-110 (420)
222 PF05911 DUF869: Plant protein 82.8 43 0.00093 41.0 16.7 105 245-365 94-198 (769)
223 COG1579 Zn-ribbon protein, pos 82.5 56 0.0012 34.9 15.5 29 283-311 54-82 (239)
224 PF06705 SF-assemblin: SF-asse 81.8 70 0.0015 33.3 17.6 153 262-429 39-191 (247)
225 cd03813 GT1_like_3 This family 81.4 2.7 5.8E-05 46.7 5.9 41 513-554 1-41 (475)
226 PF05278 PEARLI-4: Arabidopsis 81.2 33 0.00073 37.1 13.5 135 130-306 125-260 (269)
227 KOG0995 Centromere-associated 80.9 1.3E+02 0.0028 35.9 27.6 27 249-275 331-357 (581)
228 PF05483 SCP-1: Synaptonemal c 80.9 1.5E+02 0.0031 36.4 22.9 76 240-315 447-526 (786)
229 PRK10246 exonuclease subunit S 80.3 1.7E+02 0.0037 36.8 27.4 63 621-685 954-1023(1047)
230 KOG0243 Kinesin-like protein [ 80.1 56 0.0012 41.2 16.5 122 279-427 432-560 (1041)
231 PF00343 Phosphorylase: Carboh 79.7 9.1 0.0002 46.1 9.7 39 520-558 16-54 (713)
232 KOG0994 Extracellular matrix g 79.3 2.1E+02 0.0045 37.2 21.8 23 295-317 1525-1547(1758)
233 KOG4673 Transcription factor T 79.1 1.7E+02 0.0036 36.0 20.6 27 154-180 410-437 (961)
234 PF09730 BicD: Microtubule-ass 79.0 49 0.0011 40.2 15.3 108 169-301 37-148 (717)
235 PF07106 TBPIP: Tat binding pr 78.9 4.9 0.00011 39.3 6.1 61 242-302 71-137 (169)
236 PRK11519 tyrosine kinase; Prov 78.7 1.6E+02 0.0034 35.5 20.9 38 510-551 524-561 (719)
237 PF13514 AAA_27: AAA domain 78.3 2E+02 0.0043 36.4 30.9 44 262-305 284-327 (1111)
238 KOG0804 Cytoplasmic Zn-finger 78.1 41 0.00089 38.9 13.6 83 312-400 347-429 (493)
239 KOG0018 Structural maintenance 77.9 1.1E+02 0.0023 39.0 17.7 172 243-426 683-869 (1141)
240 cd07623 BAR_SNX1_2 The Bin/Amp 77.7 90 0.002 32.2 18.7 94 337-431 110-207 (224)
241 PF12252 SidE: Dot/Icm substra 77.7 61 0.0013 41.1 15.6 36 359-394 1287-1322(1439)
242 PRK10884 SH3 domain-containing 77.7 5.6 0.00012 41.0 6.4 20 169-188 96-115 (206)
243 PF04156 IncA: IncA protein; 77.6 25 0.00054 34.6 10.7 39 275-313 82-120 (191)
244 COG4913 Uncharacterized protei 77.5 44 0.00094 40.9 14.0 75 380-456 775-853 (1104)
245 COG1842 PspA Phage shock prote 77.5 91 0.002 32.9 15.1 73 290-367 26-98 (225)
246 PF09325 Vps5: Vps5 C terminal 77.3 83 0.0018 31.5 15.7 81 347-427 132-217 (236)
247 cd03786 GT1_UDP-GlcNAc_2-Epime 77.2 7.7 0.00017 40.3 7.3 51 621-679 71-122 (363)
248 KOG4438 Centromere-associated 77.1 1.5E+02 0.0032 34.4 20.7 77 293-373 260-336 (446)
249 PRK10929 putative mechanosensi 77.1 2.3E+02 0.0049 36.5 26.8 58 251-311 174-231 (1109)
250 PF12761 End3: Actin cytoskele 77.0 8 0.00017 40.0 7.1 52 273-324 88-140 (195)
251 COG0497 RecN ATPase involved i 76.7 1.7E+02 0.0037 34.9 19.3 36 150-185 162-197 (557)
252 PF09789 DUF2353: Uncharacteri 76.6 38 0.00083 37.5 12.6 123 244-366 80-212 (319)
253 TIGR00634 recN DNA repair prot 76.3 1.5E+02 0.0033 34.5 17.9 48 247-294 172-222 (563)
254 PRK11199 tyrA bifunctional cho 76.2 41 0.00089 37.1 12.9 28 527-554 104-131 (374)
255 PF14362 DUF4407: Domain of un 75.7 37 0.00079 36.0 11.9 73 278-350 132-213 (301)
256 PF04156 IncA: IncA protein; 75.2 25 0.00053 34.6 9.9 18 250-267 95-112 (191)
257 KOG0946 ER-Golgi vesicle-tethe 75.0 2E+02 0.0043 35.9 18.6 69 247-315 734-826 (970)
258 PF03033 Glyco_transf_28: Glyc 74.4 6.5 0.00014 35.6 5.2 28 527-554 6-35 (139)
259 COG0707 MurG UDP-N-acetylgluco 74.2 53 0.0011 36.4 13.0 114 526-679 9-124 (357)
260 smart00787 Spc7 Spc7 kinetocho 74.2 44 0.00095 36.6 12.3 54 245-301 146-199 (312)
261 PRK09841 cryptic autophosphory 73.7 27 0.00058 41.8 11.4 18 199-216 269-286 (726)
262 PF11559 ADIP: Afadin- and alp 73.5 46 0.00099 32.0 11.0 41 324-366 106-149 (151)
263 PF08172 CASP_C: CASP C termin 73.2 12 0.00025 39.8 7.4 107 347-463 83-218 (248)
264 cd07651 F-BAR_PombeCdc15_like 73.1 1.2E+02 0.0025 31.3 15.1 55 247-301 57-113 (236)
265 PF07989 Microtub_assoc: Micro 72.6 9.8 0.00021 33.6 5.7 30 247-276 4-33 (75)
266 KOG2129 Uncharacterized conser 72.3 90 0.0019 36.1 14.2 87 253-342 182-276 (552)
267 PF10473 CENP-F_leu_zip: Leuci 72.3 85 0.0018 31.0 12.5 31 155-185 6-36 (140)
268 PF09726 Macoilin: Transmembra 72.2 1.1E+02 0.0023 37.3 15.8 48 383-431 554-605 (697)
269 PF09730 BicD: Microtubule-ass 72.2 2.5E+02 0.0053 34.6 22.9 53 163-216 125-182 (717)
270 TIGR01000 bacteriocin_acc bact 72.0 1.2E+02 0.0025 34.3 15.3 21 323-343 240-260 (457)
271 PF10186 Atg14: UV radiation r 71.6 52 0.0011 33.8 11.6 50 252-301 22-76 (302)
272 TIGR01010 BexC_CtrB_KpsE polys 70.9 74 0.0016 34.6 13.1 64 280-345 241-304 (362)
273 PF11932 DUF3450: Protein of u 70.8 45 0.00098 34.7 11.0 31 356-388 130-160 (251)
274 PLN02605 monogalactosyldiacylg 70.8 8.3 0.00018 41.5 5.9 33 514-551 1-36 (382)
275 TIGR03794 NHPM_micro_HlyD NHPM 70.5 91 0.002 34.6 13.9 25 327-351 228-252 (421)
276 KOG0979 Structural maintenance 70.4 1.6E+02 0.0035 37.4 16.7 42 376-420 407-448 (1072)
277 PF00038 Filament: Intermediat 70.3 1.5E+02 0.0032 31.3 25.8 176 249-431 88-280 (312)
278 PF04100 Vps53_N: Vps53-like, 70.3 1E+02 0.0022 34.6 14.2 124 248-386 23-147 (383)
279 TIGR03087 stp1 sugar transfera 70.1 4.1 8.8E-05 43.6 3.4 40 514-555 1-40 (397)
280 KOG1003 Actin filament-coating 69.4 36 0.00079 35.5 9.7 56 315-370 14-73 (205)
281 PF00261 Tropomyosin: Tropomyo 69.3 1.5E+02 0.0032 30.9 23.5 20 326-345 120-139 (237)
282 KOG1850 Myosin-like coiled-coi 68.7 2.1E+02 0.0045 32.3 24.1 210 143-424 23-240 (391)
283 TIGR00998 8a0101 efflux pump m 68.2 1.1E+02 0.0024 32.3 13.3 14 543-556 256-269 (334)
284 KOG0804 Cytoplasmic Zn-finger 68.0 43 0.00092 38.8 10.7 37 245-281 391-427 (493)
285 PF14073 Cep57_CLD: Centrosome 67.9 1.5E+02 0.0033 30.5 16.1 147 136-337 2-173 (178)
286 TIGR02977 phageshock_pspA phag 67.8 80 0.0017 32.5 11.9 105 291-400 27-132 (219)
287 PF10473 CENP-F_leu_zip: Leuci 67.6 93 0.002 30.8 11.7 89 247-338 7-106 (140)
288 KOG0244 Kinesin-like protein [ 67.3 3.4E+02 0.0074 34.3 18.6 55 194-275 327-381 (913)
289 PF07407 Seadorna_VP6: Seadorn 66.9 18 0.0004 40.3 7.4 105 249-412 31-136 (420)
290 PF10267 Tmemb_cc2: Predicted 66.3 28 0.0006 39.5 8.9 31 243-273 212-242 (395)
291 PRK11519 tyrosine kinase; Prov 66.0 53 0.0011 39.3 11.7 18 199-216 269-286 (719)
292 PF02951 GSH-S_N: Prokaryotic 65.3 10 0.00022 36.1 4.6 41 512-555 1-41 (119)
293 PF12325 TMF_TATA_bd: TATA ele 65.1 48 0.001 31.8 9.0 51 287-337 43-93 (120)
294 PF06008 Laminin_I: Laminin Do 64.7 1.9E+02 0.0041 30.4 19.9 66 288-353 153-219 (264)
295 PF12000 Glyco_trans_4_3: Gkyc 64.6 18 0.00039 36.4 6.4 58 592-653 19-80 (171)
296 PLN02501 digalactosyldiacylgly 64.2 46 0.001 40.8 10.6 162 384-556 175-366 (794)
297 PRK10698 phage shock protein P 64.0 1.8E+02 0.0039 30.3 13.7 110 291-405 27-137 (222)
298 PF00804 Syntaxin: Syntaxin; 63.5 97 0.0021 26.6 11.3 83 327-422 15-103 (103)
299 PF04111 APG6: Autophagy prote 63.4 30 0.00066 37.7 8.3 15 323-337 96-110 (314)
300 PF12325 TMF_TATA_bd: TATA ele 63.1 39 0.00085 32.4 8.1 63 245-307 25-87 (120)
301 PF01576 Myosin_tail_1: Myosin 62.3 2.5 5.5E-05 51.4 0.0 119 282-412 708-830 (859)
302 PF08614 ATG16: Autophagy prot 62.1 25 0.00054 35.3 6.9 39 152-190 74-112 (194)
303 PF15188 CCDC-167: Coiled-coil 61.6 15 0.00032 33.6 4.7 60 247-306 2-61 (85)
304 PF05384 DegS: Sensor protein 61.6 1.2E+02 0.0027 30.5 11.5 104 251-369 21-124 (159)
305 cd04790 HTH_Cfa-like_unk Helix 61.5 1.8E+02 0.0039 29.0 12.7 55 436-497 111-165 (172)
306 COG3206 GumC Uncharacterized p 61.2 1.5E+02 0.0033 33.3 13.6 196 153-367 188-390 (458)
307 PRK10884 SH3 domain-containing 61.1 1.1E+02 0.0024 31.8 11.5 32 270-301 82-113 (206)
308 KOG0239 Kinesin (KAR3 subfamil 60.8 3.8E+02 0.0083 32.6 18.0 94 167-283 108-201 (670)
309 PF13166 AAA_13: AAA domain 60.8 3.4E+02 0.0074 32.0 18.6 21 355-375 389-409 (712)
310 PF07798 DUF1640: Protein of u 59.7 1.9E+02 0.0042 28.8 15.9 27 249-275 72-98 (177)
311 PRK05771 V-type ATP synthase s 59.7 69 0.0015 37.8 10.9 105 361-479 192-299 (646)
312 KOG0964 Structural maintenance 59.6 4.9E+02 0.011 33.5 19.6 137 280-426 313-459 (1200)
313 PF07464 ApoLp-III: Apolipopho 58.7 62 0.0013 32.4 8.8 71 348-427 79-150 (155)
314 PRK09343 prefoldin subunit bet 58.5 71 0.0015 30.3 8.9 50 259-308 62-112 (121)
315 COG2433 Uncharacterized conser 57.4 18 0.00039 43.0 5.6 67 242-308 428-494 (652)
316 KOG1962 B-cell receptor-associ 57.1 40 0.00087 35.5 7.6 14 244-257 115-128 (216)
317 PRK10361 DNA recombination pro 57.0 3.8E+02 0.0083 31.5 18.6 25 377-401 136-160 (475)
318 KOG0992 Uncharacterized conser 56.7 4.1E+02 0.009 31.7 20.2 82 251-335 232-314 (613)
319 PRK10476 multidrug resistance 56.2 2.4E+02 0.0052 30.4 13.5 13 544-556 261-273 (346)
320 PRK00286 xseA exodeoxyribonucl 56.0 2E+02 0.0043 32.4 13.3 84 326-422 305-388 (438)
321 PF06548 Kinesin-related: Kine 55.9 3.6E+02 0.0079 31.7 15.2 95 297-406 379-477 (488)
322 PF07106 TBPIP: Tat binding pr 55.8 43 0.00092 32.8 7.2 55 278-333 83-137 (169)
323 PF13851 GAS: Growth-arrest sp 54.7 2.6E+02 0.0056 28.8 16.5 19 325-343 149-167 (201)
324 TIGR01010 BexC_CtrB_KpsE polys 54.6 1.6E+02 0.0034 32.1 11.9 89 279-368 168-260 (362)
325 PF05911 DUF869: Plant protein 54.0 4.9E+02 0.011 32.4 16.8 109 259-370 532-644 (769)
326 PF09325 Vps5: Vps5 C terminal 54.0 2.4E+02 0.0053 28.2 17.3 44 324-370 133-176 (236)
327 PF03999 MAP65_ASE1: Microtubu 53.9 8 0.00017 45.4 2.2 158 242-411 141-316 (619)
328 cd07664 BAR_SNX2 The Bin/Amphi 53.4 3E+02 0.0065 29.1 19.2 81 347-428 130-214 (234)
329 PRK06718 precorrin-2 dehydroge 53.2 18 0.00039 36.7 4.3 32 523-555 12-43 (202)
330 PF06160 EzrA: Septation ring 52.1 4.6E+02 0.01 30.9 23.8 176 247-426 310-492 (560)
331 TIGR00215 lpxB lipid-A-disacch 51.8 63 0.0014 35.4 8.5 34 512-552 6-39 (385)
332 KOG2273 Membrane coat complex 51.6 4.2E+02 0.0092 30.3 18.5 43 324-366 361-403 (503)
333 KOG0963 Transcription factor/C 51.4 5.3E+02 0.011 31.4 25.1 189 155-395 127-335 (629)
334 PF03915 AIP3: Actin interacti 51.3 4.4E+02 0.0096 30.5 15.1 82 244-343 152-237 (424)
335 TIGR01915 npdG NADPH-dependent 50.6 24 0.00052 35.5 4.7 28 527-554 6-33 (219)
336 COG0569 TrkA K+ transport syst 50.6 19 0.00042 36.9 4.1 28 528-555 6-33 (225)
337 PF01920 Prefoldin_2: Prefoldi 50.3 67 0.0015 28.3 7.0 46 261-306 55-101 (106)
338 COG4550 Predicted membrane pro 49.6 2.6E+02 0.0056 27.3 11.2 96 324-431 7-109 (120)
339 KOG4572 Predicted DNA-binding 49.3 6.6E+02 0.014 31.9 19.8 94 196-303 1084-1190(1424)
340 PLN02166 dTDP-glucose 4,6-dehy 49.2 26 0.00057 39.3 5.2 43 501-553 110-152 (436)
341 KOG0239 Kinesin (KAR3 subfamil 48.7 5.9E+02 0.013 31.1 16.9 77 328-407 184-267 (670)
342 PF06005 DUF904: Protein of un 48.5 1.3E+02 0.0029 26.5 8.3 58 336-399 7-64 (72)
343 cd07652 F-BAR_Rgd1 The F-BAR ( 48.4 3.4E+02 0.0075 28.3 13.6 162 247-412 62-226 (234)
344 PRK05771 V-type ATP synthase s 48.3 1.9E+02 0.0042 34.2 12.2 31 159-189 93-123 (646)
345 PF14644 DUF4456: Domain of un 48.2 3.3E+02 0.0071 28.0 12.9 43 326-370 29-71 (208)
346 PF09304 Cortex-I_coil: Cortex 48.1 2.3E+02 0.0049 27.3 10.2 21 348-368 56-76 (107)
347 KOG2129 Uncharacterized conser 48.1 5.2E+02 0.011 30.3 19.5 119 247-382 133-283 (552)
348 PF11802 CENP-K: Centromere-as 48.1 4.1E+02 0.0089 29.2 13.8 149 271-422 6-173 (268)
349 PRK10869 recombination and rep 48.1 5.3E+02 0.011 30.4 22.6 23 384-406 344-366 (553)
350 PLN02842 nucleotide kinase 48.0 95 0.002 36.4 9.4 145 396-554 150-307 (505)
351 KOG1937 Uncharacterized conser 47.6 5.4E+02 0.012 30.4 17.1 187 209-419 189-376 (521)
352 KOG2072 Translation initiation 47.5 7E+02 0.015 31.6 23.3 91 129-219 541-652 (988)
353 KOG0981 DNA topoisomerase I [R 47.3 23 0.00051 42.0 4.5 37 130-166 245-282 (759)
354 TIGR02400 trehalose_OtsA alpha 47.2 51 0.0011 37.5 7.0 56 618-678 105-160 (456)
355 PF05278 PEARLI-4: Arabidopsis 47.0 2.5E+02 0.0053 30.8 11.6 147 144-332 113-262 (269)
356 cd07596 BAR_SNX The Bin/Amphip 46.5 2.9E+02 0.0062 26.9 18.0 82 348-429 115-201 (218)
357 PF09744 Jnk-SapK_ap_N: JNK_SA 46.4 3.2E+02 0.007 27.5 12.0 75 247-337 33-107 (158)
358 PF03962 Mnd1: Mnd1 family; I 46.3 2.8E+02 0.0061 28.3 11.4 30 348-379 108-137 (188)
359 TIGR02338 gimC_beta prefoldin, 46.2 1.3E+02 0.0028 27.8 8.4 46 260-305 59-105 (110)
360 PRK10246 exonuclease subunit S 45.8 7.4E+02 0.016 31.5 28.3 8 593-600 975-982 (1047)
361 cd00176 SPEC Spectrin repeats, 45.8 2.6E+02 0.0056 26.2 15.5 17 265-281 31-47 (213)
362 PRK03598 putative efflux pump 45.5 4.1E+02 0.0089 28.4 13.2 43 356-398 127-169 (331)
363 PF02403 Seryl_tRNA_N: Seryl-t 45.2 39 0.00084 30.6 4.7 18 200-217 5-22 (108)
364 PF13870 DUF4201: Domain of un 44.6 3.2E+02 0.007 27.0 13.1 36 250-285 6-41 (177)
365 PF14915 CCDC144C: CCDC144C pr 44.4 5E+02 0.011 29.0 18.2 179 171-364 61-267 (305)
366 PF02994 Transposase_22: L1 tr 44.2 41 0.00088 37.5 5.6 19 356-374 178-196 (370)
367 PF08172 CASP_C: CASP C termin 44.1 95 0.0021 33.1 8.0 31 315-345 117-147 (248)
368 PF04849 HAP1_N: HAP1 N-termin 43.8 2.9E+02 0.0063 30.7 11.8 70 201-274 171-244 (306)
369 PF04977 DivIC: Septum formati 43.7 33 0.00071 28.8 3.8 47 247-293 21-67 (80)
370 KOG0249 LAR-interacting protei 43.6 2.1E+02 0.0045 35.3 11.3 124 141-280 109-232 (916)
371 COG1269 NtpI Archaeal/vacuolar 43.6 1.6E+02 0.0034 35.5 10.5 181 279-475 111-309 (660)
372 COG3853 TelA Uncharacterized p 43.6 5.6E+02 0.012 29.5 15.8 101 259-362 157-266 (386)
373 KOG3850 Predicted membrane pro 43.6 4.6E+02 0.0099 30.4 13.3 134 158-349 266-403 (455)
374 PF07083 DUF1351: Protein of u 43.3 4E+02 0.0087 27.6 16.1 181 262-462 20-202 (215)
375 PF14193 DUF4315: Domain of un 42.8 98 0.0021 28.2 6.8 60 358-427 2-62 (83)
376 PF07334 IFP_35_N: Interferon- 42.8 19 0.0004 32.4 2.2 27 252-278 2-28 (76)
377 KOG4593 Mitotic checkpoint pro 42.6 7.5E+02 0.016 30.6 21.7 34 152-185 61-99 (716)
378 PF04912 Dynamitin: Dynamitin 42.3 4.5E+02 0.0098 29.3 13.3 17 382-398 369-385 (388)
379 KOG4809 Rab6 GTPase-interactin 42.0 7.1E+02 0.015 30.2 19.1 237 144-431 312-560 (654)
380 cd07667 BAR_SNX30 The Bin/Amph 41.9 4.7E+02 0.01 28.1 17.5 45 384-428 177-222 (240)
381 KOG4677 Golgi integral membran 41.8 6.6E+02 0.014 29.8 18.2 75 239-323 298-382 (554)
382 KOG4603 TBP-1 interacting prot 41.7 1.5E+02 0.0033 30.7 8.7 95 249-363 78-172 (201)
383 PF04012 PspA_IM30: PspA/IM30 41.4 3.9E+02 0.0086 27.0 18.0 108 260-369 26-145 (221)
384 PF04899 MbeD_MobD: MbeD/MobD 41.4 99 0.0021 27.4 6.4 43 323-368 25-67 (70)
385 PF06248 Zw10: Centromere/kine 41.2 5E+02 0.011 30.5 14.0 24 167-190 8-31 (593)
386 PHA03392 egt ecdysteroid UDP-g 41.1 23 0.00051 40.6 3.3 40 511-555 20-59 (507)
387 PF06564 YhjQ: YhjQ protein; 40.8 36 0.00078 36.1 4.4 35 512-552 1-37 (243)
388 PF13747 DUF4164: Domain of un 40.7 2.9E+02 0.0062 25.2 10.1 52 353-404 11-62 (89)
389 PF03446 NAD_binding_2: NAD bi 40.5 42 0.00091 32.3 4.5 26 529-554 8-33 (163)
390 COG3879 Uncharacterized protei 40.1 78 0.0017 34.1 6.6 55 169-230 67-121 (247)
391 TIGR03794 NHPM_micro_HlyD NHPM 39.7 5.7E+02 0.012 28.5 16.9 14 544-557 310-323 (421)
392 COG1819 Glycosyl transferases, 39.7 33 0.00072 38.3 4.1 37 511-555 1-39 (406)
393 PF10146 zf-C4H2: Zinc finger- 39.4 2.2E+02 0.0047 30.3 9.7 85 268-365 19-103 (230)
394 PF02606 LpxK: Tetraacyldisacc 39.1 44 0.00095 36.6 4.8 48 506-558 29-78 (326)
395 PF03980 Nnf1: Nnf1 ; InterPr 38.9 1.7E+02 0.0037 26.7 7.9 92 149-272 11-109 (109)
396 PRK13411 molecular chaperone D 38.3 1.6E+02 0.0034 35.1 9.5 42 263-304 504-545 (653)
397 PRK15490 Vi polysaccharide bio 38.2 60 0.0013 38.6 6.0 35 638-678 278-313 (578)
398 PF10168 Nup88: Nuclear pore c 38.0 5.5E+02 0.012 31.5 13.9 25 343-367 600-624 (717)
399 PF04111 APG6: Autophagy prote 37.9 2E+02 0.0044 31.5 9.6 34 247-280 103-136 (314)
400 KOG2398 Predicted proline-seri 37.8 8.2E+02 0.018 29.7 17.3 104 321-429 108-216 (611)
401 KOG3742 Glycogen synthase [Car 37.7 12 0.00027 43.3 0.4 32 643-679 177-208 (692)
402 PF07246 Phlebovirus_NSM: Phle 37.7 56 0.0012 35.4 5.2 28 249-276 215-242 (264)
403 PF04420 CHD5: CHD5-like prote 37.6 56 0.0012 32.3 4.9 57 253-309 36-94 (161)
404 PF05659 RPW8: Arabidopsis bro 37.6 1.3E+02 0.0029 29.6 7.4 52 293-344 32-84 (147)
405 PF01442 Apolipoprotein: Apoli 37.3 3.6E+02 0.0078 25.4 19.7 15 383-397 161-175 (202)
406 PF11932 DUF3450: Protein of u 37.1 5.1E+02 0.011 27.1 15.4 52 377-428 66-117 (251)
407 KOG0962 DNA repair protein RAD 37.0 1.1E+03 0.025 31.1 23.7 147 262-416 800-955 (1294)
408 PRK09814 beta-1,6-galactofuran 36.7 63 0.0014 34.3 5.5 41 638-682 61-105 (333)
409 KOG4687 Uncharacterized coiled 36.2 6.6E+02 0.014 28.1 16.7 35 247-281 87-121 (389)
410 PF14073 Cep57_CLD: Centrosome 36.2 5.1E+02 0.011 26.9 13.1 99 312-421 64-170 (178)
411 PF15188 CCDC-167: Coiled-coil 35.9 43 0.00093 30.7 3.5 64 172-260 4-67 (85)
412 PF13949 ALIX_LYPXL_bnd: ALIX 35.7 5.3E+02 0.012 26.9 22.9 169 259-431 79-270 (296)
413 PF08537 NBP1: Fungal Nap bind 35.7 3.4E+02 0.0073 30.5 10.7 51 133-187 85-137 (323)
414 cd07665 BAR_SNX1 The Bin/Amphi 35.7 5.7E+02 0.012 27.2 18.4 79 348-427 131-213 (234)
415 cd07619 BAR_Rich2 The Bin/Amph 35.2 3.5E+02 0.0075 29.2 10.5 91 325-430 127-233 (248)
416 PF06548 Kinesin-related: Kine 35.1 8.2E+02 0.018 28.9 15.3 23 343-365 448-470 (488)
417 PF02183 HALZ: Homeobox associ 35.0 33 0.00071 27.8 2.3 27 247-273 16-42 (45)
418 PF07111 HCR: Alpha helical co 35.0 9.8E+02 0.021 29.8 23.1 52 380-431 386-437 (739)
419 PF09602 PhaP_Bmeg: Polyhydrox 34.9 5.2E+02 0.011 26.6 12.6 91 323-425 12-104 (165)
420 PF00185 OTCace: Aspartate/orn 34.7 64 0.0014 31.5 4.8 36 511-555 2-37 (158)
421 PF05325 DUF730: Protein of un 34.7 64 0.0014 30.6 4.4 47 247-296 68-114 (122)
422 PF04880 NUDE_C: NUDE protein, 34.7 50 0.0011 33.5 4.0 51 133-197 2-53 (166)
423 PLN03188 kinesin-12 family pro 34.4 6.5E+02 0.014 33.2 14.0 155 145-363 1062-1238(1320)
424 COG0380 OtsA Trehalose-6-phosp 34.3 1.2E+02 0.0025 35.6 7.4 56 619-679 126-181 (486)
425 PF06920 Ded_cyto: Dedicator o 34.3 1.7E+02 0.0037 29.1 7.7 103 308-416 55-166 (178)
426 COG1199 DinG Rad3-related DNA 34.1 7.9E+02 0.017 28.9 14.2 98 461-559 386-493 (654)
427 TIGR01007 eps_fam capsular exo 34.1 69 0.0015 31.4 4.9 34 512-551 17-52 (204)
428 PRK08305 spoVFB dipicolinate s 34.0 77 0.0017 32.7 5.4 36 511-554 5-42 (196)
429 PRK06249 2-dehydropantoate 2-r 34.0 60 0.0013 34.5 4.8 34 510-554 4-37 (313)
430 PF02403 Seryl_tRNA_N: Seryl-t 33.8 2.1E+02 0.0046 25.8 7.7 69 147-215 31-99 (108)
431 PF12240 Angiomotin_C: Angiomo 33.7 6.1E+02 0.013 26.9 13.8 81 158-295 5-85 (205)
432 COG3883 Uncharacterized protei 33.7 6.7E+02 0.015 27.5 12.6 50 160-209 60-110 (265)
433 PRK10869 recombination and rep 33.6 8.6E+02 0.019 28.7 18.0 51 247-297 168-221 (553)
434 PF03087 DUF241: Arabidopsis p 33.5 4.7E+02 0.01 27.4 11.0 78 348-431 25-108 (231)
435 PF01975 SurE: Survival protei 33.4 59 0.0013 33.2 4.4 40 512-558 1-40 (196)
436 PLN02686 cinnamoyl-CoA reducta 33.3 1.3E+02 0.0028 32.7 7.2 27 527-553 59-85 (367)
437 PRK07720 fliJ flagellar biosyn 33.2 4.4E+02 0.0094 25.1 13.0 99 330-429 6-118 (146)
438 PLN02778 3,5-epimerase/4-reduc 33.2 74 0.0016 33.5 5.3 38 505-552 3-40 (298)
439 PRK01906 tetraacyldisaccharide 33.2 69 0.0015 35.5 5.2 46 508-558 52-99 (338)
440 KOG1853 LIS1-interacting prote 33.1 7.1E+02 0.015 27.6 18.3 173 251-445 14-198 (333)
441 PLN00016 RNA-binding protein; 33.0 52 0.0011 35.5 4.2 41 509-555 50-90 (378)
442 KOG4360 Uncharacterized coiled 33.0 1.9E+02 0.0041 34.3 8.7 31 286-316 273-303 (596)
443 CHL00194 ycf39 Ycf39; Provisio 32.9 64 0.0014 33.8 4.8 28 527-554 6-33 (317)
444 TIGR02132 phaR_Bmeg polyhydrox 32.9 6E+02 0.013 26.6 12.8 91 272-368 27-125 (189)
445 cd07655 F-BAR_PACSIN The F-BAR 32.7 6.2E+02 0.013 26.8 15.5 114 247-372 61-183 (258)
446 PF13815 Dzip-like_N: Iguana/D 32.5 1.6E+02 0.0035 27.6 6.9 45 382-430 74-118 (118)
447 cd07666 BAR_SNX7 The Bin/Amphi 32.5 6.6E+02 0.014 27.0 14.4 68 348-425 154-222 (243)
448 COG4026 Uncharacterized protei 32.5 2.3E+02 0.005 30.6 8.5 92 258-379 129-223 (290)
449 PLN02572 UDP-sulfoquinovose sy 32.4 68 0.0015 36.0 5.1 37 505-551 41-77 (442)
450 TIGR00682 lpxK tetraacyldisacc 32.4 81 0.0017 34.5 5.5 46 508-558 24-71 (311)
451 TIGR01380 glut_syn glutathione 32.2 54 0.0012 35.1 4.1 41 512-555 1-41 (312)
452 cd00632 Prefoldin_beta Prefold 32.2 3.9E+02 0.0086 24.3 10.2 94 326-428 6-99 (105)
453 PF04124 Dor1: Dor1-like famil 32.2 7E+02 0.015 27.3 17.0 194 249-477 6-201 (338)
454 COG1382 GimC Prefoldin, chaper 32.2 3.5E+02 0.0075 26.4 9.0 112 160-316 7-119 (119)
455 KOG4603 TBP-1 interacting prot 32.2 5.3E+02 0.011 27.0 10.7 42 245-286 118-159 (201)
456 PF14197 Cep57_CLD_2: Centroso 32.2 2.4E+02 0.0052 24.7 7.3 64 254-337 2-65 (69)
457 PRK00094 gpsA NAD(P)H-dependen 32.1 65 0.0014 33.6 4.6 33 511-554 1-33 (325)
458 COG0702 Predicted nucleoside-d 32.0 36 0.00078 33.7 2.6 34 525-558 4-37 (275)
459 PF01920 Prefoldin_2: Prefoldi 32.0 92 0.002 27.5 4.9 38 251-288 6-43 (106)
460 PRK09730 putative NAD(P)-bindi 32.0 66 0.0014 31.4 4.4 28 527-554 7-34 (247)
461 PF13460 NAD_binding_10: NADH( 31.8 49 0.0011 31.2 3.3 31 526-556 3-33 (183)
462 PTZ00007 (NAP-L) nucleosome as 31.7 2.4E+02 0.0051 31.7 8.9 32 440-474 98-129 (337)
463 TIGR00020 prfB peptide chain r 31.6 1.8E+02 0.004 32.8 8.1 21 196-216 22-42 (364)
464 KOG0447 Dynamin-like GTP bindi 31.4 5.1E+02 0.011 31.6 11.8 140 324-520 175-317 (980)
465 PF10458 Val_tRNA-synt_C: Valy 31.4 1.4E+02 0.003 25.4 5.7 56 160-215 5-64 (66)
466 PRK14619 NAD(P)H-dependent gly 31.3 74 0.0016 33.8 4.9 33 511-554 4-36 (308)
467 PF10481 CENP-F_N: Cenp-F N-te 31.2 6.7E+02 0.015 27.9 11.8 61 274-334 18-82 (307)
468 PF10498 IFT57: Intra-flagella 31.0 3.5E+02 0.0075 30.5 10.1 58 169-234 269-330 (359)
469 TIGR03029 EpsG chain length de 31.0 4E+02 0.0087 27.5 10.0 39 509-551 100-138 (274)
470 PF06785 UPF0242: Uncharacteri 30.9 7.5E+02 0.016 28.3 12.4 146 151-333 63-262 (401)
471 PRK08655 prephenate dehydrogen 30.5 65 0.0014 36.4 4.5 28 527-554 6-33 (437)
472 PF08429 PLU-1: PLU-1-like pro 30.4 7.1E+02 0.015 26.7 14.7 54 326-379 250-303 (335)
473 PF05546 She9_MDM33: She9 / Md 30.3 6.1E+02 0.013 26.9 11.0 77 136-217 7-83 (207)
474 PRK06522 2-dehydropantoate 2-r 30.2 72 0.0016 32.9 4.5 26 529-554 7-32 (304)
475 PHA03003 palmytilated EEV memb 30.0 77 0.0017 35.0 4.9 46 512-557 230-279 (369)
476 PRK08229 2-dehydropantoate 2-r 30.0 67 0.0014 34.1 4.3 33 511-554 2-34 (341)
477 PF04102 SlyX: SlyX; InterPro 29.8 80 0.0017 27.3 4.0 23 293-315 2-24 (69)
478 PF05478 Prominin: Prominin; 29.6 9.2E+02 0.02 29.7 14.2 169 136-337 532-706 (806)
479 KOG3565 Cdc42-interacting prot 29.6 1.1E+03 0.024 28.8 19.6 114 134-280 6-120 (640)
480 PTZ00009 heat shock 70 kDa pro 29.6 3.8E+02 0.0083 32.0 10.8 73 261-336 512-584 (653)
481 PF04007 DUF354: Protein of un 29.6 5.5E+02 0.012 28.6 11.3 27 532-558 14-40 (335)
482 PF15035 Rootletin: Ciliary ro 29.4 4.1E+02 0.0088 27.2 9.5 139 167-344 17-166 (182)
483 KOG4403 Cell surface glycoprot 29.2 3.5E+02 0.0075 31.8 9.7 55 278-332 365-427 (575)
484 PF00201 UDPGT: UDP-glucoronos 29.2 24 0.00051 39.2 0.9 28 528-555 10-37 (500)
485 PRK00290 dnaK molecular chaper 29.1 2.6E+02 0.0056 33.0 9.3 42 351-397 554-595 (627)
486 PRK15422 septal ring assembly 29.1 3.8E+02 0.0082 24.6 8.1 47 353-399 21-71 (79)
487 PF06248 Zw10: Centromere/kine 29.1 4E+02 0.0087 31.3 10.7 50 318-371 75-124 (593)
488 PLN02206 UDP-glucuronate decar 29.0 86 0.0019 35.4 5.2 38 505-552 113-150 (442)
489 PF03568 Peptidase_C50: Peptid 28.9 7.7E+02 0.017 27.6 12.4 34 312-345 58-91 (383)
490 PRK06719 precorrin-2 dehydroge 28.9 72 0.0016 31.2 4.0 27 529-555 20-46 (157)
491 KOG0244 Kinesin-like protein [ 28.8 6.1E+02 0.013 32.2 12.3 108 245-373 703-810 (913)
492 PF10168 Nup88: Nuclear pore c 28.7 4.8E+02 0.01 32.0 11.5 28 402-429 635-662 (717)
493 PRK12921 2-dehydropantoate 2-r 28.5 72 0.0016 33.0 4.2 31 512-553 1-31 (305)
494 PF04011 LemA: LemA family; I 28.4 6E+02 0.013 25.3 13.2 39 383-421 120-158 (186)
495 COG2433 Uncharacterized conser 28.1 2.9E+02 0.0063 33.5 9.2 63 153-215 429-492 (652)
496 PRK05647 purN phosphoribosylgl 28.1 2E+02 0.0044 29.3 7.2 118 511-688 1-123 (200)
497 PRK10675 UDP-galactose-4-epime 28.0 77 0.0017 32.9 4.3 26 527-552 6-31 (338)
498 PRK10361 DNA recombination pro 28.0 1.1E+03 0.023 28.0 15.3 19 387-405 139-157 (475)
499 PRK06129 3-hydroxyacyl-CoA deh 27.9 91 0.002 33.1 4.9 26 529-554 9-34 (308)
500 COG1340 Uncharacterized archae 27.9 8.8E+02 0.019 27.0 21.5 36 141-176 16-51 (294)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.8e-196 Score=1666.31 Aligned_cols=681 Identities=66% Similarity=1.026 Sum_probs=634.7
Q ss_pred CCcccccccccCcceeecccCCCCcCCccccccccccccccccccccccCCCchhHHhhhcccCCCCCCCCCCCCCccCC
Q 005005 1 MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTS 80 (720)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sq~krq~~k~~sp~~~~~~~~~l~~~~ 80 (720)
||.+-++||++|||+++.| +.+||+|+||++|+||+||||+||||||||++|+++|+| ||+|++||+|+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 69 (977)
T PLN02939 1 AAAAESAALLSHGCGPIRS----------RAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQ-RSSNSKLQSNT 69 (977)
T ss_pred CchhhhhhHhhcccccccc----------CCCCCCchhccccccccccCCCchhhhhhhhccCCCCcc-cccccccccCc
Confidence 5778899999999999954 668999999999999999999999999999999999998 99999999999
Q ss_pred CCCCcccccccCC--CCC-Ccccccccccc-cccccccccccc----cccCCCccccccchhHHHHHHHhhhhhHHHHHH
Q 005005 81 DGDSESESSLIDR--EPI-DVEHTEEQNLG-SVFVPELKESLV----LNCDGGEELSTSQLDNLISMIRNAEKNILLLNE 152 (720)
Q Consensus 81 d~~~~~e~~l~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 152 (720)
|||+|+||+++++ +.| +.|+.+.+.+. +.+.++.+.+.. -+..+|+|+|++|||||+|||||||||||||||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (977)
T PLN02939 70 DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQ 149 (977)
T ss_pred cccccccccccccccccccCCCCccccccchhhcchhhhccccHhhhhccccccccccccHHHHHHHHHHHHhhhHhHHH
Confidence 9999999999996 445 55555554444 345555444433 367789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCC
Q 005005 153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE 232 (720)
Q Consensus 153 ~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
||++||+||+|||+|||+|||+||||||||||||+|+|+++|+++||||+|+|||||||||+++|+++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL---------- 219 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 005005 233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (720)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~ 312 (720)
.+|+|++||++||+|||+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+
T Consensus 220 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (977)
T PLN02939 220 -----------CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS 288 (977)
T ss_pred -----------ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 005005 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (720)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (720)
||+||++|| |||||||||+||++||||+|+|++||+||||||+|||+||+||+|||+||+||+++ ++||||||+
T Consensus 289 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 362 (977)
T PLN02939 289 KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKL 362 (977)
T ss_pred hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999999999999999999999977 999999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHHH
Q 005005 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLRE 472 (720)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~ 472 (720)
+|+|||+||+||+||+++|+++|++||++|++||+|+++++.++|+++|||+|||+||||||+|+|+++|+++|||.||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~ 442 (977)
T PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLRE 442 (977)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcchhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 473 MVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 473 ~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
|||+|+.+|+++|+++++++|+|++++|+++.+++++++|||||||+||+||+|||||||||++||+||+++||+|+|||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIl 522 (977)
T PLN02939 443 MVWKRDGRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVL 522 (977)
T ss_pred HHHhhhhhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 005005 553 PKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE 632 (720)
Q Consensus 553 PkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALE 632 (720)
|+|+++.+..+..++.....+..+++|..+.++||.+.++||+||||++++|+.||+|+.+||++||++||+|||+|+++
T Consensus 523 P~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe 602 (977)
T PLN02939 523 PKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALE 602 (977)
T ss_pred CCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999875444444333333444566666678999999999999999987665699999999999999999999999999
Q ss_pred HHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCC
Q 005005 633 LLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAH 712 (720)
Q Consensus 633 lL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~ 712 (720)
++.+.+|+||||||||||||+|||+|++.|...++.++|+||||||++|||.||+..+..+|||+++|.++++++|. +|
T Consensus 603 ~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~ 681 (977)
T PLN02939 603 LLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AH 681 (977)
T ss_pred HHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cC
Confidence 99999999999999999999998999877766667889999999999999999999998999999988779999875 89
Q ss_pred CCCcccCC
Q 005005 713 DRINPLKV 720 (720)
Q Consensus 713 G~INfLK~ 720 (720)
|++|+||+
T Consensus 682 ~~iN~LK~ 689 (977)
T PLN02939 682 GRINVVKG 689 (977)
T ss_pred CchHHHHH
Confidence 99999984
No 2
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=1.2e-48 Score=391.58 Aligned_cols=196 Identities=43% Similarity=0.766 Sum_probs=148.3
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccc--cccceee------EEEEeeecCCceeEE
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDLRAL------DVVVESYFDGRLFKN 584 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~--v~~L~~l------~V~v~s~f~G~~~~v 584 (720)
||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+.... ...+..+ .+.+. . .+.+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~----~-~~~~ 75 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVG----V-WYEV 75 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE---------E
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEeccccccccccc----c-ceEE
Confidence 79999999999999999999999999999999999999999998886532 1111111 11111 1 1467
Q ss_pred EEEEEEeCCceEEecCCCCCCCCCCCCCCCCC-----cchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHH
Q 005005 585 KVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGE-----HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 659 (720)
Q Consensus 585 ~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~-----~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyL 659 (720)
+||+...+||++|||+++ .||+|+.+|++ +||++||++||+|++++++.++|+||||||||||||++ |+++
T Consensus 76 ~v~~~~~~~v~v~~i~~~---~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~-p~~l 151 (245)
T PF08323_consen 76 RVYRYPVDGVPVYFIDNP---EYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALA-PLYL 151 (245)
T ss_dssp EEEEEEETTEEEEEEESH---HHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTH-HHHH
T ss_pred EEEEEEcCCccEEEecCh---hhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHH-HHHh
Confidence 899999999999999964 38999999976 79999999999999999999999999999999999999 5555
Q ss_pred H-hhCcC-CCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccCC
Q 005005 660 D-LYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV 720 (720)
Q Consensus 660 k-~y~~~-gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK~ 720 (720)
+ .+..+ .+.++|+||||||++|||.|+.+.+..+|||+..+..++.++ ++|.+|+||+
T Consensus 152 k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~---~~~~in~lk~ 211 (245)
T PF08323_consen 152 KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYE---FYGQINFLKA 211 (245)
T ss_dssp HHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTE---ETTEEEHHHH
T ss_pred ccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccc---cccccCHHHH
Confidence 4 44333 577899999999999999999999988999987765677767 7899999983
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1e-43 Score=386.71 Aligned_cols=194 Identities=29% Similarity=0.499 Sum_probs=158.8
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEE
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~ 589 (720)
++|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++... ...+..+ ..+...+++ .+++|.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~~ 76 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQV-HSFPDLFGG---PARLLAA 76 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEE-EEEeeeCCc---eEEEEEE
Confidence 4699999999999999999999999999999999999999999999998532 2222211 112212222 4689999
Q ss_pred EeCCceEEecCCCCCCCCCCCCC-CCCC------cchHHHHHHHHHHHHHHHHhc--CCCCcEEEECchhhhhHHHHHHH
Q 005005 590 TIEGLPVYFIEPHHPDKFFWRGQ-FYGE------HDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWD 660 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R~~-IYG~------~DDaeRFafFSRAALElL~kl--g~kPDIIHcHDWHTALVaPLyLk 660 (720)
..+||+||||+++ . ||+|++ +|++ +||++||+|||+|+++++... +|+||||||||||||++ |.++.
T Consensus 77 ~~~~v~~~~~~~~--~-~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~-~~~l~ 152 (485)
T PRK14099 77 RAGGLDLFVLDAP--H-LYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLA-PAYLH 152 (485)
T ss_pred EeCCceEEEEeCh--H-hhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHH-HHHHH
Confidence 9999999999964 3 899885 8853 599999999999999999764 79999999999999998 66664
Q ss_pred hhCcCCCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccC
Q 005005 661 LYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (720)
Q Consensus 661 ~y~~~gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK 719 (720)
. .. ..++|+|+||||+.|||.|+...+..+|++++.+ .+++++ ++|.+|+||
T Consensus 153 ~-~~--~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~k 204 (485)
T PRK14099 153 Y-SG--RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAF-SLDGVE---YYGGIGYLK 204 (485)
T ss_pred h-CC--CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHc-Cchhhh---hCCCccHHH
Confidence 2 11 2368999999999999999998888899998874 567776 899999987
No 4
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2.3e-43 Score=384.30 Aligned_cols=201 Identities=27% Similarity=0.500 Sum_probs=152.4
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccc--cccc-eeeEEEEeeecCCceeEE
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDL-RALDVVVESYFDGRLFKN 584 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~--v~~L-~~l~V~v~s~f~G~~~~v 584 (720)
.+++|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++.... .... ....+ ...+.+.....
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDI--EVPLKEKTDLL 79 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEE--EEeecCeeEEE
Confidence 4677999999999999999999999999999999999999999999999986421 1111 11111 11122222222
Q ss_pred EEEEEEeC--CceEEecCCCCCCCCCCCCCCCCC-------cchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHH
Q 005005 585 KVWVSTIE--GLPVYFIEPHHPDKFFWRGQFYGE-------HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVA 655 (720)
Q Consensus 585 ~Vw~~~vd--GVpVYFID~~~Pe~fF~R~~IYG~-------~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVa 655 (720)
.++....+ ||++|||+++ . ||+|+++||+ +||++||++||+|+++++.+.+|+||||||||||||++
T Consensus 80 ~~~~~~~~~~~v~~~~~~~~--~-~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~- 155 (489)
T PRK14098 80 HVKVTALPSSKIQTYFLYNE--K-YFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLV- 155 (489)
T ss_pred EEEEecccCCCceEEEEeCH--H-HcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH-
Confidence 33333343 7999999964 3 9999999975 49999999999999999998999999999999999999
Q ss_pred HHHH-HhhCcC-CCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccCC
Q 005005 656 PLYW-DLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV 720 (720)
Q Consensus 656 PLyL-k~y~~~-gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK~ 720 (720)
|+++ +.|... .+.++|+|+||||++|||.|+...+..+ +|++.+ ++++ .++|.+|+||.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~---~~~~--~~~~~~n~lk~ 216 (489)
T PRK14098 156 PLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVC---SGLH--REGDEVNMLYT 216 (489)
T ss_pred HHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhh---hhhh--hcCCcccHHHH
Confidence 5555 344322 3568999999999999999988766655 665542 2333 14688999873
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.5e-39 Score=347.58 Aligned_cols=196 Identities=43% Similarity=0.728 Sum_probs=161.5
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v 591 (720)
|||+|||+|++|++|||||||||++||+||+++||+|+||+|+|+++.... .............+.+..+.++||...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEV-DDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhh-ccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 899999999999999999999999999999999999999999999875422 1112222233344566677899999999
Q ss_pred CCceEEecCCCCCCCCCCCC-CCCC--CcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHH-hhCcCCC
Q 005005 592 EGLPVYFIEPHHPDKFFWRG-QFYG--EHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWD-LYVPKGL 667 (720)
Q Consensus 592 dGVpVYFID~~~Pe~fF~R~-~IYG--~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk-~y~~~gf 667 (720)
+||++|||+++ . ||+|+ .+|| +.|+..||++||+|+++++++.+++|||||||||||+++ |.+++ .+..
T Consensus 80 ~~v~~~~i~~~--~-~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~-~~~l~~~~~~--- 152 (473)
T TIGR02095 80 EGVPVYFIDNP--S-LFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALV-PALLKAVYRP--- 152 (473)
T ss_pred CCceEEEEECH--H-HcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHH-HHHHHhhccC---
Confidence 99999999964 2 89885 5999 689999999999999999998899999999999999998 45543 3311
Q ss_pred CCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccC
Q 005005 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (720)
Q Consensus 668 ~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK 719 (720)
.++|+|+||||+.|||.++...+..+|+|+..+ ..++++ +++.+|+||
T Consensus 153 ~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~k 200 (473)
T TIGR02095 153 NPIKTVFTIHNLAYQGVFPADDFSELGLPPEYF-HMEGLE---FYGRVNFLK 200 (473)
T ss_pred CCCCEEEEcCCCccCCcCCHHHHHHcCCChHHc-Cchhhh---cCCchHHHH
Confidence 148999999999999999998888889997764 345555 678888876
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=7.3e-40 Score=382.07 Aligned_cols=232 Identities=43% Similarity=0.723 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHhhhhhhc-------ccCChhHHHHHHHHHHhhcCcchhhhHhhhhhc---hHHHHHhhhhc------
Q 005005 440 DMPWEFWSRLLLIIDGWLLE-------KKLSTSEAKLLREMVWKRNGRIRDAYMECKEKN---EHEAISTFLKL------ 503 (720)
Q Consensus 440 ~~~~~~ws~lllrid~~~l~-------~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~---~~e~~~~~~~~------ 503 (720)
...+++|-+... ++|+.. +|...++++.+...| ..+.|||||..... +...+++-.++
T Consensus 505 ~~~~ev~~~g~~--NrWth~~~~~~~~~m~~~~~g~~~~a~v----~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v 578 (1036)
T PLN02316 505 NGKPEVWFRGSF--NRWTHRLGPLPPQKMVPADNGSHLKATV----KVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPV 578 (1036)
T ss_pred CCCceEEEEccc--cCcCCCCCCCCceeeeecCCCceEEEEE----EccccceEEEEEEecCCCCCCcCCCCCcCCcccc
Confidence 456788888888 899765 344555554433333 57899999965544 33466666555
Q ss_pred -cCCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCcee
Q 005005 504 -TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 582 (720)
Q Consensus 504 -~~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~ 582 (720)
.+..++++|||||||+||+|++|||||||||++||+||+++||+|+||+|+|+++.......+.. .....+.+ .
T Consensus 579 ~g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~---~~~~~~~~--~ 653 (1036)
T PLN02316 579 FGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHY---QRSYSWGG--T 653 (1036)
T ss_pred cCCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceE---EEEeccCC--E
Confidence 36777899999999999999999999999999999999999999999999999875432222221 11111222 2
Q ss_pred EEEEEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhh
Q 005005 583 KNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLY 662 (720)
Q Consensus 583 ~v~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y 662 (720)
.++||.+.++||++|||+++. .||+|+.+||++||++||+|||+|+++++.+.+++||||||||||||++|.+++..|
T Consensus 654 ~~~v~~~~~~GV~vyfl~~~~--~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~ 731 (1036)
T PLN02316 654 EIKVWFGKVEGLSVYFLEPQN--GMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHY 731 (1036)
T ss_pred EEEEEEEEECCcEEEEEeccc--cccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhh
Confidence 578999999999999999642 489999999999999999999999999999999999999999999999955444555
Q ss_pred CcCCCCCCCEEEEecCCCcccc
Q 005005 663 VPKGLNSARVCFTCHNFEYQGT 684 (720)
Q Consensus 663 ~~~gf~~iptVFTIHNLaYQGi 684 (720)
...++.++|+|+||||++||+.
T Consensus 732 ~~~~~~~~p~V~TiHnl~~~~n 753 (1036)
T PLN02316 732 AHYGLSKARVVFTIHNLEFGAN 753 (1036)
T ss_pred hhhccCCCCEEEEeCCcccchh
Confidence 4445678999999999999874
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=7.3e-39 Score=343.73 Aligned_cols=190 Identities=36% Similarity=0.584 Sum_probs=156.3
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEE--
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS-- 589 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~-- 589 (720)
|||+|||+|++|++|+|||||||++||++|+++||+|+||+|+|+++.... ...... ... ..++||.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~---~~~------~~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVV---GRL------DLFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEE---EEe------eeEEEEEEeE
Confidence 899999999999999999999999999999999999999999999875321 111110 110 12567776
Q ss_pred EeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCC
Q 005005 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ 669 (720)
..+||+||||+++ . ||+|+.+|++.||.+||+|||+|+++++.+++++||||||||||||+++.++.+.| ..++.+
T Consensus 71 ~~~gv~v~~v~~~--~-~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDAP--H-LFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeCH--H-HcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 4589999999964 3 89999999999999999999999999999889999999999999999854444444 334557
Q ss_pred CCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccC
Q 005005 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (720)
Q Consensus 670 iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK 719 (720)
+|+|+||||+.|||.++.+.+..+|+|++.+ ..+.++ +++.+|+||
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~ 192 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAF-HLEGLE---FYGQISFLK 192 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHc-Cchhhh---cCCcccHHH
Confidence 9999999999999999998888899998764 456666 677888876
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=347.57 Aligned_cols=198 Identities=34% Similarity=0.482 Sum_probs=156.4
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccc-eeeEEEEeeecCCceeEEEEEEEE
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDL-RALDVVVESYFDGRLFKNKVWVST 590 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L-~~l~V~v~s~f~G~~~~v~Vw~~~ 590 (720)
|||+++|+|+.||+|+||||||+++||++|++.|++|+|++|.|+.+.. ..... +.+ ......+.+....+.+....
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQK-EWRDLLKVV-GKFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhh-hhcccccee-eEeeeeecccceEEEEEeec
Confidence 8999999999999999999999999999999999999999999995543 22221 211 11121223333223333333
Q ss_pred eC-CceEEecCCCCCCCCCCCC--CCCCCcchHHHHHHHHHHHHHHHHhcC--CCCcEEEECchhhhhHHHHHHHhhCcC
Q 005005 591 IE-GLPVYFIEPHHPDKFFWRG--QFYGEHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLYVPK 665 (720)
Q Consensus 591 vd-GVpVYFID~~~Pe~fF~R~--~IYG~~DDaeRFafFSRAALElL~klg--~kPDIIHcHDWHTALVaPLyLk~y~~~ 665 (720)
.+ ||++|||+++ . +|+|+ ..|++.||.+||++|++|+++++...+ |.|||||||||||||+ |++++... .
T Consensus 79 ~~~~v~~~lid~~--~-~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~-~~~lk~~~-~ 153 (487)
T COG0297 79 KDGGVDLYLIDNP--A-LFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLL-PAYLKQRY-R 153 (487)
T ss_pred ccCCCcEEEecCh--h-hcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHH-HHHHhhcc-c
Confidence 34 4999999964 3 89984 789999999999999999999997766 8999999999999998 67765322 2
Q ss_pred CCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccCC
Q 005005 666 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKV 720 (720)
Q Consensus 666 gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK~ 720 (720)
....+|+||||||++|||.|+...+..+|||...+. .++++ ++|.+|+||.
T Consensus 154 ~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~---~~~~~~~lK~ 204 (487)
T COG0297 154 SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLE---FYGQISFLKG 204 (487)
T ss_pred ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceee---ecCcchhhhh
Confidence 245799999999999999999778889999987765 77777 7899999984
No 9
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.4e-36 Score=321.66 Aligned_cols=200 Identities=40% Similarity=0.638 Sum_probs=157.1
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
||||||+|++|++|+||||||+++||+||+++||+|+||+|+|+++.......+... ..+...+.+....+++|...++
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVL-RLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEE-EEEeeccCCceeEEEEEEEEeC
Confidence 699999999999999999999999999999999999999999998865322222211 1112334556678899999999
Q ss_pred CceEEecCCCCCCCCCCCCC-----CCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCC
Q 005005 593 GLPVYFIEPHHPDKFFWRGQ-----FYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~-----IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf 667 (720)
||++||++++. +|.|+. .|++.|+..||++||+|+++++...+++|||||||||||++++.+++..+....+
T Consensus 80 gv~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDNPD---YFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcChH---HcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 99999999652 666654 4667899999999999999999988999999999999999984444343322235
Q ss_pred CCCCEEEEecCCCccccCCccchhcCCCCccccCCCCcccCCCCCCCCcccC
Q 005005 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (720)
Q Consensus 668 ~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D~leD~~~~G~INfLK 719 (720)
.++|+||||||+.|||.++...+..+++++......+.+ .+++.+|++|
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 205 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGL---EFYGQVNFLK 205 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhccc---ccCCcccHHH
Confidence 689999999999999999988888787775322223333 3678888875
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.92 E-value=2.5e-24 Score=242.04 Aligned_cols=204 Identities=22% Similarity=0.250 Sum_probs=149.6
Q ss_pred EEEEeccc-----CCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc--cc----cc--cc--------cc-eee--
Q 005005 514 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM--QY----DR--ID--------DL-RAL-- 569 (720)
Q Consensus 514 ILfVSSE~-----aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I--~~----~~--v~--------~L-~~l-- 569 (720)
|+|+|+|+ .| +-.||||..++..-++++.+|..+..|.-.|..- .+ ++ .. .+ -..
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 68899996 67 4689999999999999999999999997766543 22 10 00 00 000
Q ss_pred -----EEEEeeecCCceeEEEEEEEEeCCceEEecCCCCCC-CCCCCC---CCCCCcchHHHH---HHHHHHHHHHHHhc
Q 005005 570 -----DVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRRF---SFFSRAALELLLQA 637 (720)
Q Consensus 570 -----~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe-~fF~R~---~IYG~~DDaeRF---afFSRAALElL~kl 637 (720)
.+.+...+.|....+++|...+++|++||++++.++ .+|+|+ .+||+ |+..|| +|||+|++++++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~-D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG-DKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 112334456667789999999999999999976433 478888 68985 445555 99999999999999
Q ss_pred CCCCcEEEECchhhhhHHHHHHHhhCc-----C-CC--CCCCEEEEecCCCcccc--CCccchh--------cCCCCccc
Q 005005 638 GKQPDIIHCHDWQTAFVAPLYWDLYVP-----K-GL--NSARVCFTCHNFEYQGT--APAKELA--------SCGLDVQQ 699 (720)
Q Consensus 638 g~kPDIIHcHDWHTALVaPLyLk~y~~-----~-gf--~~iptVFTIHNLaYQGi--Fp~~~L~--------~lGLp~e~ 699 (720)
+++|||||||||||||+|+.+++.... . .+ .+.++||||||+.|||+ ||.+.+. .+|||++.
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 999999999999999995554332111 1 11 25789999999999998 9988774 47999877
Q ss_pred cCCCCcccCCCCCCCCcccCC
Q 005005 700 LNRPDRMQDNSAHDRINPLKV 720 (720)
Q Consensus 700 l~~~D~leD~~~~G~INfLK~ 720 (720)
+. ..+++...++|.+||+|+
T Consensus 239 ~~-~~~~~~~~~~~~vnm~~l 258 (601)
T TIGR02094 239 LL-ALGRENPDDPEPFNMTVL 258 (601)
T ss_pred HH-hhhhhccCccCceeHHHH
Confidence 53 445553223588999873
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.90 E-value=3.5e-23 Score=238.09 Aligned_cols=205 Identities=21% Similarity=0.250 Sum_probs=150.6
Q ss_pred eEEEEeccc-----CCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc--cc----cc--c---c-----c--cee-
Q 005005 513 HVIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM--QY----DR--I---D-----D--LRA- 568 (720)
Q Consensus 513 KILfVSSE~-----aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I--~~----~~--v---~-----~--L~~- 568 (720)
-|+|+|+|+ .| +-.||||..+|+.-++++.+|..+..|--.|..- .+ ++ . . . +..
T Consensus 87 ~~aYFs~E~gl~~~lp-iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLP-IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 344999996 67 4699999999999999999999999997777542 21 10 0 0 0 000
Q ss_pred -----eEEEEeeecCCceeEEEEEEEEeCCceEEecCCCCCC-CCCCCC---CCCCCcchHHH---HHHHHHHHHHHHHh
Q 005005 569 -----LDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRR---FSFFSRAALELLLQ 636 (720)
Q Consensus 569 -----l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe-~fF~R~---~IYG~~DDaeR---FafFSRAALElL~k 636 (720)
-.+.+...+.|....++||...+.+|++||++++.++ .+|+|+ .+||+ |+..| |+|||+|++++++.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-D~~~Rl~Qe~~Lg~agl~~Lr~ 244 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-DQETRIQQEILLGIGGVRALRA 244 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 0123344556767789999999999999999986532 357887 68985 68889 59999999999999
Q ss_pred cCCCCcEEEECchhhhhHHHH----HHHh--hCcC-C--CCCCCEEEEecCCCccc--cCCccchh--------cCCCCc
Q 005005 637 AGKQPDIIHCHDWQTAFVAPL----YWDL--YVPK-G--LNSARVCFTCHNFEYQG--TAPAKELA--------SCGLDV 697 (720)
Q Consensus 637 lg~kPDIIHcHDWHTALVaPL----yLk~--y~~~-g--f~~iptVFTIHNLaYQG--iFp~~~L~--------~lGLp~ 697 (720)
+|+.|||||||||||||+++- ++.. +... . ..+.++||||||+.||| .||.+.+. .+|+|+
T Consensus 245 lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~ 324 (778)
T cd04299 245 LGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSR 324 (778)
T ss_pred hCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCH
Confidence 999999999999999999542 3322 1111 1 23578999999999999 99998773 379998
Q ss_pred cccCCCCcccCC-CCCCCCcccCC
Q 005005 698 QQLNRPDRMQDN-SAHDRINPLKV 720 (720)
Q Consensus 698 e~l~~~D~leD~-~~~G~INfLK~ 720 (720)
+.|. ..++++. ..+|.+||+|.
T Consensus 325 ~~~~-~lg~e~~~~~~~~~nM~~l 347 (778)
T cd04299 325 DRFL-ALGRENPGDDPEPFNMAVL 347 (778)
T ss_pred HHHh-hhccccccCccCceeHHHH
Confidence 8753 4455521 01478999873
No 12
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.05 E-value=2.8e-09 Score=114.66 Aligned_cols=136 Identities=20% Similarity=0.245 Sum_probs=87.7
Q ss_pred ceEEEEeccc----CC-----ccccCCHHHHHHHHHHHHHHCCC--eEEEEecCCCcccccccccceeeEEEEeeecCCc
Q 005005 512 LHVIHIAAEM----AP-----VAKVGGLGDVVAGLGKALQKKGH--LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGR 580 (720)
Q Consensus 512 MKILfVSSE~----aP-----fAKVGGLGDVVgsLPKALa~lGh--EV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~ 580 (720)
++|+++|... +| ...+||.+.++..|.++|+++|| +|.|+++.|+...... .+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~-------------~~~~- 66 (439)
T TIGR02472 1 LYLLLLSLHGLIRGHDLELGRDADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSP-------------DYAQ- 66 (439)
T ss_pred CeEEEEeCCcCCCCCccccCCCCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCC-------------ccCC-
Confidence 3566666554 23 23479999999999999999997 9999998765321000 0000
Q ss_pred eeEEEEEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHH-HHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHH
Q 005005 581 LFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 659 (720)
Q Consensus 581 ~~~v~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeR-FafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyL 659 (720)
.+....+||+|+.+... + ..|....+... +.+|+.+.+.++++.+++|||||||+|++++++.++.
T Consensus 67 -----~~~~~~~gv~v~r~~~~-~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~ 133 (439)
T TIGR02472 67 -----PIERIAPGARIVRLPFG-P-------RRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLS 133 (439)
T ss_pred -----CeeEeCCCcEEEEecCC-C-------CCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHH
Confidence 11234578888887521 1 11211111111 2567778888887666789999999999988743333
Q ss_pred HhhCcCCCCCCCEEEEecCCC
Q 005005 660 DLYVPKGLNSARVCFTCHNFE 680 (720)
Q Consensus 660 k~y~~~gf~~iptVFTIHNLa 680 (720)
+. .++|+|+|+|+..
T Consensus 134 ~~------~~~p~V~t~H~~~ 148 (439)
T TIGR02472 134 RL------LGVPLIFTGHSLG 148 (439)
T ss_pred HH------hCCCEEEeccccc
Confidence 32 3689999999864
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.93 E-value=8.8e-09 Score=107.22 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=82.2
Q ss_pred EEEEecccCCcc-----ccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEE
Q 005005 514 VIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (720)
Q Consensus 514 ILfVSSE~aPfA-----KVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~ 588 (720)
|++|+....|+. ..||.+.++..|.++|+++||+|+|+++.++.... .. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~-------------------~~------~ 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQP-------------------PV------V 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCC-------------------Cc------c
Confidence 577888887754 46999999999999999999999999987531110 00 0
Q ss_pred EEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCC
Q 005005 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (720)
Q Consensus 589 ~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAAL-ElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf 667 (720)
...+|+.++.+... . +... +...-...+..|....+ .++....++|||||+|+|.+++++.++.+.
T Consensus 56 ~~~~~~~v~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~------ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAG--P-YEGL----DKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDR------ 122 (405)
T ss_pred ccCCCcEEEEecCC--C-cccC----CHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHh------
Confidence 12357777766421 0 1110 00011122334555555 455555678999999999998874333332
Q ss_pred CCCCEEEEecCCC
Q 005005 668 NSARVCFTCHNFE 680 (720)
Q Consensus 668 ~~iptVFTIHNLa 680 (720)
.++|+|+|+|+..
T Consensus 123 ~~~p~v~t~h~~~ 135 (405)
T TIGR03449 123 WGVPLVHTAHTLA 135 (405)
T ss_pred cCCCEEEeccchH
Confidence 3689999999863
No 14
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.92 E-value=7.5e-09 Score=91.24 Aligned_cols=107 Identities=26% Similarity=0.348 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCCceEEecCCCCCCCC
Q 005005 528 GGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKF 607 (720)
Q Consensus 528 GGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe~f 607 (720)
||.+.++..|.++|+++||+|+|++|.++..... ....|++++-+..+.
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 49 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPR---- 49 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCc----
Confidence 8999999999999999999999999986533210 113456665554211
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHH-hhCcCCCCCCCEEEEecCCCc
Q 005005 608 FWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWD-LYVPKGLNSARVCFTCHNFEY 681 (720)
Q Consensus 608 F~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk-~y~~~gf~~iptVFTIHNLaY 681 (720)
...... +.. +..+...++.....+|||||+|+|.+++++ .+.. . .++|+|+|+|+..+
T Consensus 50 --~~~~~~---~~~----~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~-~~~~~~------~~~p~v~~~h~~~~ 108 (160)
T PF13579_consen 50 --RPWPLR---LLR----FLRRLRRLLAARRERPDVVHAHSPTAGLVA-ALARRR------RGIPLVVTVHGTLF 108 (160)
T ss_dssp --SSSGGG---HCC----HHHHHHHHCHHCT---SEEEEEHHHHHHHH-HHHHHH------HT--EEEE-SS-T-
T ss_pred --cchhhh---hHH----HHHHHHHHHhhhccCCeEEEecccchhHHH-HHHHHc------cCCcEEEEECCCch
Confidence 110000 111 122333333445679999999999988763 3333 2 26999999998653
No 15
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.86 E-value=3e-08 Score=118.49 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=92.4
Q ss_pred CCCCCCCceEEEEecccCCc---------cccCCHHHHHHHHHHHHHHCC--CeEEEEecCCCcccc--cccccceeeEE
Q 005005 505 SSSISSGLHVIHIAAEMAPV---------AKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQY--DRIDDLRALDV 571 (720)
Q Consensus 505 ~~~k~~~MKILfVSSE~aPf---------AKVGGLGDVVgsLPKALa~lG--hEV~VILPkY~~I~~--~~v~~L~~l~V 571 (720)
+..+.++|+|+||+-.-.|- +=|||...+|..|++||+++| |+|.|++.....-.. ........+.-
T Consensus 163 ~~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~ 242 (1050)
T TIGR02468 163 DQQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTP 242 (1050)
T ss_pred hhcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccc
Confidence 44456789999999775432 448999999999999999998 899999987532100 00000000000
Q ss_pred EEeeecCCceeEEEEEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHhc------------C
Q 005005 572 VVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDF-RRFSFFSRAALELLLQA------------G 638 (720)
Q Consensus 572 ~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDa-eRFafFSRAALElL~kl------------g 638 (720)
.. ..+.. -..+...|+.|+.|... |. .-|-..... ....-|..+++.++.+. +
T Consensus 243 -~~--~~~~~----~~~~~~~g~rIvRip~G-P~------~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~ 308 (1050)
T TIGR02468 243 -RS--SENDG----DEMGESSGAYIIRIPFG-PR------DKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHP 308 (1050)
T ss_pred -cc--ccccc----ccccCCCCeEEEEeccC-CC------CCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC
Confidence 00 00000 01123358887777532 11 112222222 23345777777665431 1
Q ss_pred CCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 639 ~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
..|||||+|+|.+|+++..+... .++|+|+|.|.+
T Consensus 309 ~~pDvIHaHyw~sG~aa~~L~~~------lgVP~V~T~HSL 343 (1050)
T TIGR02468 309 VWPYVIHGHYADAGDSAALLSGA------LNVPMVLTGHSL 343 (1050)
T ss_pred CCCCEEEECcchHHHHHHHHHHh------hCCCEEEECccc
Confidence 24999999999999985433332 379999999987
No 16
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.79 E-value=8.3e-08 Score=101.10 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=80.5
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC--CCcccccccccceeeEEEEeeecCCceeEEEEEEE
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK--YDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk--Y~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~ 589 (720)
|||++|+..+.|. .||.|.++..|.++|+++||+|+|++|. |+...... .+.+.. .-..
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~-------------~~~~~~----~~~~ 61 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGE-------------GYSAWR----YRRE 61 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCc-------------cccccc----ceee
Confidence 8999999999996 6999999999999999999999999965 33211000 000100 0112
Q ss_pred EeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-HHhcCCCCcEEEECchhh--hhHHHHHHHhhCcCC
Q 005005 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQT--AFVAPLYWDLYVPKG 666 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALEl-L~klg~kPDIIHcHDWHT--ALVaPLyLk~y~~~g 666 (720)
..+|++|+.+... ...++ .+. .-..++..|...++.. ++...++|||||+|.+.. +++ .+++..
T Consensus 62 ~~~~i~v~r~~~~----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~-~~~~~~----- 128 (412)
T PRK10307 62 SEGGVTVWRCPLY----VPKQP--SGL-KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPG-ARLLAR----- 128 (412)
T ss_pred ecCCeEEEEcccc----CCCCc--cHH-HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHH-HHHHHH-----
Confidence 3578888887521 01111 000 0111223344433333 333347899999998643 222 222221
Q ss_pred CCCCCEEEEecCCC
Q 005005 667 LNSARVCFTCHNFE 680 (720)
Q Consensus 667 f~~iptVFTIHNLa 680 (720)
..++|+|+++|+..
T Consensus 129 ~~~~~~v~~~~d~~ 142 (412)
T PRK10307 129 LSGARTWLHIQDYE 142 (412)
T ss_pred hhCCCEEEEeccCC
Confidence 13679999999754
No 17
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.70 E-value=1.1e-07 Score=111.39 Aligned_cols=191 Identities=17% Similarity=0.157 Sum_probs=111.6
Q ss_pred HHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcchhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEeccc----
Q 005005 446 WSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEM---- 521 (720)
Q Consensus 446 ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~---- 521 (720)
|++.-.++-.|=+++--. +-|...+++. ..-+++-+..|+..++.|++..++ .|||+|||.+.
T Consensus 203 ~~~~~~~~~~~g~~~gwg-~~~~~~~~~~--------~~l~~~~~~p~~~~~e~f~~~~p~----~~rIa~lS~Hg~~~~ 269 (784)
T TIGR02470 203 YSEFEFELQELGFEPGWG-DTAQRVLETL--------HLLDDLLEAPDPSVLEAFLGRIPM----VFNVVILSPHGYFGQ 269 (784)
T ss_pred hhHHHHHHHHhCCCCCcC-ccHHHHHHHH--------HHHHHHHhCCChhHHHHHHhhCCc----cceEEEEecccccCC
Confidence 555545545443333222 2234444443 123466788889999999866554 39999999998
Q ss_pred CCccc----cCCHHHHHHHHHHHH--------HHCCC----eEEEEecCCCcccccccccceeeEEEEeeecCCceeEEE
Q 005005 522 APVAK----VGGLGDVVAGLGKAL--------QKKGH----LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNK 585 (720)
Q Consensus 522 aPfAK----VGGLGDVVgsLPKAL--------a~lGh----EV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~ 585 (720)
.| .- |||...+|..|++|| +++|| .|.|++..-+.... . . +......
T Consensus 270 ~~-~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-----~-~--------~~~~~e~-- 332 (784)
T TIGR02470 270 EN-VLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-----T-T--------CNQRLEK-- 332 (784)
T ss_pred cc-ccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-----c-c--------ccccccc--
Confidence 33 23 799999999999985 69999 67799887542210 0 0 0000000
Q ss_pred EEEEEeCCceEEecCCCCCC-----CCCCCCCCCCCcchHHHHHHHHHHHHHHHH-hcCCCCcEEEECchhhhhHHHHHH
Q 005005 586 VWVSTIEGLPVYFIEPHHPD-----KFFWRGQFYGEHDDFRRFSFFSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYW 659 (720)
Q Consensus 586 Vw~~~vdGVpVYFID~~~Pe-----~fF~R~~IYG~~DDaeRFafFSRAALElL~-klg~kPDIIHcHDWHTALVaPLyL 659 (720)
....+|+.|..+....+. .+-.+..+++ -..-|+..++..+. ..+.+|||||+|.|.+|+++.++.
T Consensus 333 --~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p------~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla 404 (784)
T TIGR02470 333 --VYGTEHAWILRVPFRTENGIILRNWISRFEIWP------YLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLA 404 (784)
T ss_pred --ccCCCceEEEEecCCCCcccccccccCHHHHHH------HHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHH
Confidence 001234445444321000 0111111211 11346777776554 456799999999999999853332
Q ss_pred HhhCcCCCCCCCEEEEecCCC
Q 005005 660 DLYVPKGLNSARVCFTCHNFE 680 (720)
Q Consensus 660 k~y~~~gf~~iptVFTIHNLa 680 (720)
+. .++|.|+|.|.++
T Consensus 405 ~~------lgVP~v~t~HsL~ 419 (784)
T TIGR02470 405 RK------LGVTQCTIAHALE 419 (784)
T ss_pred Hh------cCCCEEEECCcch
Confidence 22 3799999999874
No 18
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.69 E-value=1.2e-07 Score=96.36 Aligned_cols=130 Identities=25% Similarity=0.415 Sum_probs=80.6
Q ss_pred eEEEEecccCCccc-----cCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEE
Q 005005 513 HVIHIAAEMAPVAK-----VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVW 587 (720)
Q Consensus 513 KILfVSSE~aPfAK-----VGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw 587 (720)
||+|++.-.+|..+ .||.+.++..|.++|+++||+|.|+.+..+.... ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~------~~------------------- 55 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALP------PI------------------- 55 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccC------Cc-------------------
Confidence 46777666555544 6799999999999999999999999876432110 00
Q ss_pred EEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCC
Q 005005 588 VSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (720)
Q Consensus 588 ~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf 667 (720)
....+|+.++.+... +..++....++ ..+..|.+++..++.....+|||||+|.|.+++++ .++.. .
T Consensus 56 ~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~-~~~~~-----~ 122 (398)
T cd03800 56 VELAPGVRVVRVPAG-PAEYLPKEELW------PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVA-LLLAR-----R 122 (398)
T ss_pred cccccceEEEecccc-cccCCChhhcc------hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHH-HHHHh-----h
Confidence 011245666655421 11011111111 11224566666666655459999999999998863 33321 1
Q ss_pred CCCCEEEEecCCC
Q 005005 668 NSARVCFTCHNFE 680 (720)
Q Consensus 668 ~~iptVFTIHNLa 680 (720)
.++|+|+|+|.+.
T Consensus 123 ~~~~~i~~~h~~~ 135 (398)
T cd03800 123 LGIPLVHTFHSLG 135 (398)
T ss_pred cCCceEEEeeccc
Confidence 3689999999874
No 19
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.66 E-value=2.4e-07 Score=97.59 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=75.5
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
||++|+.=+.|. .||....+..|+++|+++||+|.|++|.++.... .. ...+
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-------------------~~-------~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG-------------------IR-------YLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC-------------------cc-------cccC
Confidence 699998878885 7999999999999999999999999987642100 00 0124
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCE
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ipt 672 (720)
|++++.+... .+.+...+. ++..+.+.+..++. ..+|||||+|++.++++...++. .. ..++|+
T Consensus 53 ~i~v~~~p~~----~~~~~~~~~------~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~--~~--~~~~~~ 116 (398)
T cd03796 53 GLKVYYLPFV----VFYNQSTLP------TFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLH--AR--TMGLKT 116 (398)
T ss_pred ceeEEEecce----eccCCcccc------chhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHH--hh--hcCCcE
Confidence 5666665421 011111111 11111222223333 35899999999887654222221 11 236899
Q ss_pred EEEecCC
Q 005005 673 CFTCHNF 679 (720)
Q Consensus 673 VFTIHNL 679 (720)
|+|.|+.
T Consensus 117 v~t~h~~ 123 (398)
T cd03796 117 VFTDHSL 123 (398)
T ss_pred EEEeccc
Confidence 9999985
No 20
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.60 E-value=5e-07 Score=89.82 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=40.3
Q ss_pred ceEEEEecccCC--ccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 512 LHVIHIAAEMAP--VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 512 MKILfVSSE~aP--fAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
|||+||+..+.| -...||.+.++..|.++|.+.||+|+++.|..+
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 899999999865 446899999999999999999999999998654
No 21
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.49 E-value=9.8e-07 Score=90.70 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=35.4
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||++|+..+.|. +.||.+.++..|.++|++. ++|.|++..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCC
Confidence 8999999988774 5799999999999999987 788877653
No 22
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.49 E-value=1.2e-06 Score=95.19 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=41.9
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
.++|||++++ |..|+..+||.+.++..|.++|.++||+|.|++|..
T Consensus 56 ~~~mrI~~~~-~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFV-EPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEE-CCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 7789999996 777878899999999999999999999999999864
No 23
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.47 E-value=1.4e-06 Score=88.47 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=34.7
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||++++ .|. .||.+.++..|.++|+++||+|+|++...
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 8999997 454 69999999999999999999999998753
No 24
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.44 E-value=3e-06 Score=82.95 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=79.2
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
|||+|+.-+.|.. ||.+.++..+.++|++.||+|.++.+........... . .......
T Consensus 1 kIl~i~~~~~~~~--~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~----------------~----~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPEL--GGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYK----------------G----YKREEVD 58 (394)
T ss_pred CEEEEecccCCcc--CCcceeHHHHHHHHHhCCceEEEEecCCCcccccccc----------------c----ceEEecC
Confidence 6999998887754 9999999999999999999999999875432210000 0 0112345
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHH-HhhCcCCCCCCC
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW-DLYVPKGLNSAR 671 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyL-k~y~~~gf~~ip 671 (720)
|++++.+... .+.....+ ....++..|.......+.....+|||||+|.|......+.++ .. ..++|
T Consensus 59 ~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-----~~~~~ 126 (394)
T cd03794 59 GVRVHRVPLP----PYKKNGLL---KRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR-----LKGAP 126 (394)
T ss_pred CeEEEEEecC----CCCccchH---HHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH-----hcCCC
Confidence 6666666421 11111111 112233344444444444346799999999843322212332 22 13689
Q ss_pred EEEEecCC
Q 005005 672 VCFTCHNF 679 (720)
Q Consensus 672 tVFTIHNL 679 (720)
+++++|++
T Consensus 127 ~i~~~h~~ 134 (394)
T cd03794 127 FVLEVRDL 134 (394)
T ss_pred EEEEehhh
Confidence 99999986
No 25
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.41 E-value=4.9e-07 Score=102.95 Aligned_cols=154 Identities=23% Similarity=0.276 Sum_probs=84.6
Q ss_pred EecccCCccccCCHHHHHHHHHHHHH-HCCCeEEEEecCCCcccccccccceeeEEEEeeecCC-ceeEEEEEEE--EeC
Q 005005 517 IAAEMAPVAKVGGLGDVVAGLGKALQ-KKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG-RLFKNKVWVS--TIE 592 (720)
Q Consensus 517 VSSE~aPfAKVGGLGDVVgsLPKALa-~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G-~~~~v~Vw~~--~vd 592 (720)
+|||+.- ||||.=.|+.+=++.++ +.|-+..+|-|.+..-....++.+.+-+..+...... ....++|..| .++
T Consensus 7 ~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~ 84 (590)
T cd03793 7 VAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIE 84 (590)
T ss_pred Eeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcC
Confidence 8899887 79999999888766664 5788999999986522111111111100000000000 0011223333 356
Q ss_pred Cce-EEecCCCCCCCCCCC--------------C--CCCCCcchHHHHHHHHHHHH-HHHHh-cCCCCcEEEECchhhhh
Q 005005 593 GLP-VYFIEPHHPDKFFWR--------------G--QFYGEHDDFRRFSFFSRAAL-ELLLQ-AGKQPDIIHCHDWQTAF 653 (720)
Q Consensus 593 GVp-VYFID~~~Pe~fF~R--------------~--~IYG~~DDaeRFafFSRAAL-ElL~k-lg~kPDIIHcHDWHTAL 653 (720)
|-| |.++|.. .+|++ + ..|++.+++.-|++.+.-++ ++... ...+|||+|+|||+||+
T Consensus 85 G~P~viL~D~~---~~~~~~~~~~~~lW~~~~i~s~~~~~d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~HeWm~g~ 161 (590)
T cd03793 85 GYPKVVLFDIG---SAAWKLDEWKGELWELCGIGSPEGDRETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHEWQAGV 161 (590)
T ss_pred CCCeEEEEeCc---hhhhhHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcchhHhH
Confidence 754 5566642 12321 1 12334566665555444333 22223 24579999999999999
Q ss_pred HHHHHHHhhCcCCCCCCCEEEEecCCC
Q 005005 654 VAPLYWDLYVPKGLNSARVCFTCHNFE 680 (720)
Q Consensus 654 VaPLyLk~y~~~gf~~iptVFTIHNLa 680 (720)
+ .++++... .++|+|||+|...
T Consensus 162 a-~~~lK~~~----~~VptVfTtHAT~ 183 (590)
T cd03793 162 G-LPLLRKRK----VDVSTIFTTHATL 183 (590)
T ss_pred H-HHHHHHhC----CCCCEEEEecccc
Confidence 7 44444321 3689999999775
No 26
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.39 E-value=3.2e-06 Score=87.11 Aligned_cols=41 Identities=37% Similarity=0.484 Sum_probs=36.3
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
|||+|+. |....||...++..|.++|+++||+|+|+++.++
T Consensus 1 mkIl~~~----~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~ 41 (392)
T cd03805 1 LRVAFIH----PDLGIGGAERLVVDAALALQSRGHEVTIYTSHHD 41 (392)
T ss_pred CeEEEEC----CCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 8999995 4456899999999999999999999999998653
No 27
>PLN00142 sucrose synthase
Probab=98.34 E-value=1.5e-06 Score=102.25 Aligned_cols=192 Identities=17% Similarity=0.158 Sum_probs=105.9
Q ss_pred HHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcchhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecccC--C
Q 005005 446 WSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA--P 523 (720)
Q Consensus 446 ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~a--P 523 (720)
|++.-.++-.|=+++--. +-|...+++. ..-+++-+..|+..++.|++..++ -|+|++||.... |
T Consensus 227 ~~~~~~~~~~~g~~~gwg-~~~~~~~~~~--------~~l~~~~~~p~~~~~e~f~~~~p~----~~~i~~iS~Hg~~~~ 293 (815)
T PLN00142 227 YSEFEHRFQELGLEKGWG-DTAERVLETI--------HLLLDLLQAPDPSTLEKFLGRIPM----VFNVVIFSPHGYFGQ 293 (815)
T ss_pred chHHHHHHHHhCCCCCcC-ccHHHHHHHH--------HHHHHHHhCCChhHHHHHHhhhhH----hHhhheecccccccc
Confidence 555555555554433322 2234444443 123466788888889998855433 389999988753 2
Q ss_pred -----ccccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCcccccccccceeeEEEEeeecCCceeEEEE
Q 005005 524 -----VAKVGGLGDVVA--------GLGKALQKKGHLVE----IVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKV 586 (720)
Q Consensus 524 -----fAKVGGLGDVVg--------sLPKALa~lGhEV~----VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~V 586 (720)
..=|||--.+|- .|.++|+++||+|. |++..-+.... . .+..+...
T Consensus 294 ~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~------~--------~~~~~~e~--- 356 (815)
T PLN00142 294 ANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKG------T--------TCNQRLEK--- 356 (815)
T ss_pred cccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccC------C--------cccCccee---
Confidence 234777555554 45578889999885 77775421110 0 00000000
Q ss_pred EEEEeCCceEEecCCCCC-C---CCCCCCCCCCCcchHHHHHHHHHHHHHHH-HhcCCCCcEEEECchhhhhHHHHHHHh
Q 005005 587 WVSTIEGLPVYFIEPHHP-D---KFFWRGQFYGEHDDFRRFSFFSRAALELL-LQAGKQPDIIHCHDWQTAFVAPLYWDL 661 (720)
Q Consensus 587 w~~~vdGVpVYFID~~~P-e---~fF~R~~IYG~~DDaeRFafFSRAALElL-~klg~kPDIIHcHDWHTALVaPLyLk~ 661 (720)
.....|+.|..+..... . .+-.|..++++- .-|+..++..+ ...+..|||||+|.|.+|+|+..+...
T Consensus 357 -v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L------~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~ 429 (815)
T PLN00142 357 -VSGTEHSHILRVPFRTEKGILRKWISRFDVWPYL------ETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK 429 (815)
T ss_pred -ccCCCceEEEecCCCCCccccccccCHHHHHHHH------HHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH
Confidence 00012344433321100 0 011122222211 24677777665 445678999999999999985444333
Q ss_pred hCcCCCCCCCEEEEecCCC
Q 005005 662 YVPKGLNSARVCFTCHNFE 680 (720)
Q Consensus 662 y~~~gf~~iptVFTIHNLa 680 (720)
.++|.|+|.|.++
T Consensus 430 ------lgVP~v~T~HsL~ 442 (815)
T PLN00142 430 ------LGVTQCTIAHALE 442 (815)
T ss_pred ------hCCCEEEEcccch
Confidence 3799999999875
No 28
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.31 E-value=7.1e-06 Score=73.59 Aligned_cols=104 Identities=33% Similarity=0.435 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCCceEEecCCCCCC
Q 005005 526 KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605 (720)
Q Consensus 526 KVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe 605 (720)
..||.+.++..|.++|+++||+|+|++|..+...... . . ...+...+..
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~------~---~----------------~~~~~~~~~~------ 58 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE------L---V----------------KIFVKIPYPI------ 58 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST------E---E----------------EE---TT-SS------
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh------c---c----------------ceeeeeeccc------
Confidence 4899999999999999999999999999865332110 0 0 0000000000
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCCCc
Q 005005 606 KFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEY 681 (720)
Q Consensus 606 ~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNLaY 681 (720)
+. ...+...+.+....++++. +|||||+|.+.+..++..... ++|+|+|+|+..+
T Consensus 59 ----~~-------~~~~~~~~~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~--------~~~~v~~~H~~~~ 113 (177)
T PF13439_consen 59 ----RK-------RFLRSFFFMRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR--------KVPIVYTIHGPYF 113 (177)
T ss_dssp ----TS-------S--HHHHHHHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH--------CSCEEEEE-HHH-
T ss_pred ----cc-------ccchhHHHHHHHHHHHHHc--CCCeEEecccchhHHHHHhcc--------CCCEEEEeCCCcc
Confidence 01 1122234455666666654 999999999887654222211 5899999999874
No 29
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.26 E-value=2.6e-06 Score=92.09 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=77.9
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v 591 (720)
||||+|..- ...||-|.++..|.+.|.++||+|.++.-+. ...... . .+
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~-~~~~~~----~----------------------~~ 49 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGYG-KGGKES----V----------------------SH 49 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEecC-CCcccc----c----------------------cc
Confidence 899999763 5679999999999999999999999987653 222100 0 00
Q ss_pred CCce-EEecCCCCC-------CCCCCCCCCCCCcchHHHHHHHHHHHHH-HHHhcCCCCcEEEECchhhhhHHHHHHHhh
Q 005005 592 EGLP-VYFIEPHHP-------DKFFWRGQFYGEHDDFRRFSFFSRAALE-LLLQAGKQPDIIHCHDWQTAFVAPLYWDLY 662 (720)
Q Consensus 592 dGVp-VYFID~~~P-------e~fF~R~~IYG~~DDaeRFafFSRAALE-lL~klg~kPDIIHcHDWHTALVaPLyLk~y 662 (720)
.+++ ++.+.+.-. ..+|+ |+.|+++-.+. ++.. .++|||||+|.-|.+++....+..|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~ 116 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFN------------RDLFGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRF 116 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcc------------hhhcchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHH
Confidence 1110 111110000 00122 23445554443 3433 7899999999999875521111111
Q ss_pred C---cCCCCCCCEEEEecCC-CccccCCc
Q 005005 663 V---PKGLNSARVCFTCHNF-EYQGTAPA 687 (720)
Q Consensus 663 ~---~~gf~~iptVFTIHNL-aYQGiFp~ 687 (720)
. .-...++|+|+|.|+. .+.|.+..
T Consensus 117 ~~~~~~~~~~~piV~TlHd~~~~tg~c~~ 145 (405)
T PRK10125 117 CEKVKNHKPDVTLVWTLHDHWSVTGRCAF 145 (405)
T ss_pred HhhhhcccCCCCEEEecccccccCCCcCC
Confidence 0 0112468999999998 57776655
No 30
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.24 E-value=8.7e-06 Score=81.43 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=70.4
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
|||++++. .+.||...++..|.++|.+.||+|+|+.+.-+.... .. . .
T Consensus 1 ~il~~~~~----~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~----~~-----------~-------------~ 48 (360)
T cd04951 1 KILYVITG----LGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVK----PP-----------I-------------D 48 (360)
T ss_pred CeEEEecC----CCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCcc----ch-----------h-------------h
Confidence 58888766 368999999999999999999999999764221100 00 0 0
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCE
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ipt 672 (720)
+..+..+. +.+. ..+|.....++..+++ .++|||||+|.+++++++.+. ... +.+.++
T Consensus 49 ~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~--~~~pdiv~~~~~~~~~~~~l~-~~~----~~~~~~ 106 (360)
T cd04951 49 ATIILNLN-------MSKN--------PLSFLLALWKLRKILR--QFKPDVVHAHMFHANIFARLL-RLF----LPSPPL 106 (360)
T ss_pred ccceEEec-------cccc--------chhhHHHHHHHHHHHH--hcCCCEEEEcccchHHHHHHH-Hhh----CCCCcE
Confidence 00000010 0000 0111122223334444 469999999999988763333 222 246899
Q ss_pred EEEecCCCccc
Q 005005 673 CFTCHNFEYQG 683 (720)
Q Consensus 673 VFTIHNLaYQG 683 (720)
|+|+|+...+|
T Consensus 107 v~~~h~~~~~~ 117 (360)
T cd04951 107 ICTAHSKNEGG 117 (360)
T ss_pred EEEeeccCchh
Confidence 99999987655
No 31
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.21 E-value=1.6e-05 Score=71.44 Aligned_cols=109 Identities=26% Similarity=0.476 Sum_probs=65.3
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
|||+|+.... .++..+.++|++.|++|.|+++..+.... ....
T Consensus 1 KIl~i~~~~~---------~~~~~~~~~L~~~g~~V~ii~~~~~~~~~----------------------------~~~~ 43 (139)
T PF13477_consen 1 KILLIGNTPS---------TFIYNLAKELKKRGYDVHIITPRNDYEKY----------------------------EIIE 43 (139)
T ss_pred CEEEEecCcH---------HHHHHHHHHHHHCCCEEEEEEcCCCchhh----------------------------hHhC
Confidence 6888876543 36789999999999999999995432110 0124
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHHHHhcCCCCcEEEECchhh-hhHHHHHHHhhCcCCCCCC
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFS-RAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSA 670 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFS-RAALElL~klg~kPDIIHcHDWHT-ALVaPLyLk~y~~~gf~~i 670 (720)
|+.++-+..+ +.. .+.++. .....+++ ..+|||||||...+ ++++.++.+ . ...+
T Consensus 44 ~i~~~~~~~~-------~k~---------~~~~~~~~~l~k~ik--~~~~DvIh~h~~~~~~~~~~l~~~-~----~~~~ 100 (139)
T PF13477_consen 44 GIKVIRLPSP-------RKS---------PLNYIKYFRLRKIIK--KEKPDVIHCHTPSPYGLFAMLAKK-L----LKNK 100 (139)
T ss_pred CeEEEEecCC-------CCc---------cHHHHHHHHHHHHhc--cCCCCEEEEecCChHHHHHHHHHH-H----cCCC
Confidence 5555555311 110 111221 12223333 45799999999887 666333322 2 1238
Q ss_pred CEEEEecCCCc
Q 005005 671 RVCFTCHNFEY 681 (720)
Q Consensus 671 ptVFTIHNLaY 681 (720)
|+|+|+|+..+
T Consensus 101 ~~i~~~hg~~~ 111 (139)
T PF13477_consen 101 KVIYTVHGSDF 111 (139)
T ss_pred CEEEEecCCee
Confidence 99999998754
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.17 E-value=2.2e-05 Score=81.32 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=71.3
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEE
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~ 590 (720)
+|||++++.+ +||=-.++..|.++|+++||+|.++.+.++.... . ..
T Consensus 1 ~~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~--------------------~-------~~ 47 (357)
T PRK00726 1 MKKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEAR--------------------L-------VP 47 (357)
T ss_pred CcEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh--------------------c-------cc
Confidence 5899988754 4666667779999999999999999875421000 0 00
Q ss_pred eCCceEEecCCCCCCCCCCCCCCCCCcc--hHHHHHHHHHHHHHHHHhc-CCCCcEEEECchhhhhHHHHHHHhhCcCCC
Q 005005 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHD--DFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (720)
Q Consensus 591 vdGVpVYFID~~~Pe~fF~R~~IYG~~D--DaeRFafFSRAALElL~kl-g~kPDIIHcHDWHTALVaPLyLk~y~~~gf 667 (720)
..|++++.+... +.++... ....+.-|.+++..+.+.. ..+|||||||.|.+++.+ .+... +
T Consensus 48 ~~g~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~-~~~~~-----~ 112 (357)
T PRK00726 48 KAGIEFHFIPSG---------GLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPG-GLAAR-----L 112 (357)
T ss_pred cCCCcEEEEecc---------CcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHH-HHHHH-----H
Confidence 146777766521 1111111 1111222333333333222 458999999999987752 33222 1
Q ss_pred CCCCEEEEecCC
Q 005005 668 NSARVCFTCHNF 679 (720)
Q Consensus 668 ~~iptVFTIHNL 679 (720)
.++|+|++.|+.
T Consensus 113 ~~~p~v~~~~~~ 124 (357)
T PRK00726 113 LGIPLVIHEQNA 124 (357)
T ss_pred cCCCEEEEcCCC
Confidence 368999998864
No 33
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.15 E-value=3.5e-05 Score=77.43 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=37.4
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
||++|+++.+|- ..||.+.++..|.++|++.||+|.|+++..
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~ 42 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSP 42 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 689998887763 479999999999999999999999999863
No 34
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.09 E-value=3.6e-05 Score=75.67 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=38.3
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||++|+.-+.|. ..||-..++..|.++|+++||+|.|+.+...
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 699998887775 4899999999999999999999999998754
No 35
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.07 E-value=7.4e-05 Score=72.04 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=39.0
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~ 557 (720)
||++++....|. .||.+.++..|.++|.+.||+|.++.+....
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 699999998886 8999999999999999999999999997643
No 36
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.03 E-value=1.3e-05 Score=80.28 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=34.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||+|++.- + ..||.+.++..+.++|.++||+|.|+.+.
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~ 39 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQE 39 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEee
Confidence 899999752 2 35999999999999999999999999864
No 37
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.03 E-value=3.3e-05 Score=75.42 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=74.0
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
||+||+..+.| ||.+.++..|.++|.+.|++|.+++..-...... .+ ...
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~~-----------------------~~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---EL-----------------------EEA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---HH-----------------------Hhc
Confidence 68999888766 9999999999999999999999998643211000 00 013
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCE
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ipt 672 (720)
|++++.+.... . +. +..+......++. ..+|||||+|++++.+.+... ... ..++++
T Consensus 51 ~i~v~~~~~~~-------~--~~-------~~~~~~~~~~~~~--~~~~div~~~~~~~~~~~~~~-~~~----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKRP-------G--RP-------DPGALLRLYKLIR--RLRPDVVHTWMYHADLYGGLA-ARL----AGVPPV 107 (365)
T ss_pred CCeEEEEeccc-------c--cc-------cHHHHHHHHHHHH--hhCCCEEEeccccccHHHHHH-HHh----cCCCcE
Confidence 56665554210 0 00 0112222333443 468999999999987763332 221 146899
Q ss_pred EEEecCCCcc
Q 005005 673 CFTCHNFEYQ 682 (720)
Q Consensus 673 VFTIHNLaYQ 682 (720)
++|+|+..+.
T Consensus 108 i~~~~~~~~~ 117 (365)
T cd03807 108 IWGIRHSDLD 117 (365)
T ss_pred EEEecCCccc
Confidence 9999998654
No 38
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.96 E-value=6.8e-05 Score=73.72 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=39.2
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
|||+++..+.|. .||.+..+..+.++|++.||+|.++.|.++..
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 44 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGA 44 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 689999888775 79999999999999999999999999987543
No 39
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.93 E-value=6.5e-05 Score=75.50 Aligned_cols=110 Identities=20% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCCceEEecCC
Q 005005 522 APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEP 601 (720)
Q Consensus 522 aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~ 601 (720)
.|-...||.+.++..|.++|++.||+|.|+.|....... + ...|++++.+..
T Consensus 4 ~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-----~-----------------------~~~~~~~~~~~~ 55 (355)
T cd03819 4 LPALESGGVERGTLELARALVERGHRSLVASAGGRLVAE-----L-----------------------EAEGSRHIKLPF 55 (355)
T ss_pred chhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHH-----H-----------------------HhcCCeEEEccc
Confidence 344556999999999999999999999999874321100 0 012333333321
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCCCc
Q 005005 602 HHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEY 681 (720)
Q Consensus 602 ~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNLaY 681 (720)
+.+. .+ +...+.+....++. ..+|||||+|.+.+++.+.+..+ ..++|+|+|+|+...
T Consensus 56 ------~~~~-~~-------~~~~~~~~l~~~~~--~~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~ 113 (355)
T cd03819 56 ------ISKN-PL-------RILLNVARLRRLIR--EEKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYS 113 (355)
T ss_pred ------cccc-hh-------hhHHHHHHHHHHHH--HcCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchh
Confidence 1110 11 11112233334444 35899999999888765322222 136899999997753
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.92 E-value=8.6e-05 Score=72.81 Aligned_cols=42 Identities=36% Similarity=0.540 Sum_probs=37.7
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||+||+..+.| ..||.+.++..|.++|++.||+|+|+++...
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 69999988775 4799999999999999999999999998754
No 41
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.86 E-value=8.6e-05 Score=68.52 Aligned_cols=37 Identities=35% Similarity=0.620 Sum_probs=32.3
Q ss_pred EEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 514 ILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
|++++....| ..||.+.++..|.++|++.||+|.|+.
T Consensus 1 i~~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 1 ILLVSTPLLP--GGGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CeeeccccCC--CCCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 5677777666 579999999999999999999999887
No 42
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.82 E-value=0.00021 Score=72.94 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=28.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||++++.| +||=-.++..|.++|.++||+|+|+.+.+
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 688888755 23322244589999999999999998643
No 43
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.82 E-value=5.7e-05 Score=78.64 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=33.5
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
||+||++=+ ..||...++..|.++|.+.||+|.+++|.
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~ 38 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIK 38 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecC
Confidence 688887542 46999999999999999999999999984
No 44
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.81 E-value=4.7e-05 Score=85.07 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=42.0
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCC-CeEEEEecCCCc
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG-HLVEIVLPKYDC 557 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lG-hEV~VILPkY~~ 557 (720)
++|||++||.=+.|. ++|.+.-+.-+...|+++| |+|+||.|.|+.
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~ 49 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSL 49 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCcc
Confidence 459999999888897 6999999999999999999 899999999964
No 45
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.75 E-value=0.00049 Score=66.90 Aligned_cols=118 Identities=25% Similarity=0.238 Sum_probs=71.8
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
||++|+.. .||-+.++..|.++|.+.||+|.++.+....... ....
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~----------------------------~~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE----------------------------LEAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc----------------------------cccC
Confidence 68898875 6999999999999999999999999986321100 0123
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCE
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ipt 672 (720)
|+.++.+... +.... ..+.......+..+++ ..+|||||+|.+.+++++.+..+ . ....++
T Consensus 47 ~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~-~----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLD-------RRGIN-----PFKDLKALLRLYRLLR--KERPDIVHTHTPKPGILGRLAAR-L----AGVPKV 107 (359)
T ss_pred CceEEecccc-------ccccC-----hHhHHHHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHH-H----cCCCCE
Confidence 4555544321 00000 0111122223334444 35899999999887765333222 1 135788
Q ss_pred EEEecCCCccc
Q 005005 673 CFTCHNFEYQG 683 (720)
Q Consensus 673 VFTIHNLaYQG 683 (720)
++++|...+..
T Consensus 108 i~~~~~~~~~~ 118 (359)
T cd03808 108 IYTVHGLGFVF 118 (359)
T ss_pred EEEecCcchhh
Confidence 99999876543
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.74 E-value=0.00037 Score=73.61 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=62.1
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vd 592 (720)
|||||..- +| |-. ..|+++|+++||+|.|+++.-..-. . .
T Consensus 1 ~il~~~~~-~p----~~~----~~la~~L~~~G~~v~~~~~~~~~~~------------------~-------------~ 40 (396)
T cd03818 1 RILFVHQN-FP----GQF----RHLAPALAAQGHEVVFLTEPNAAPP------------------P-------------G 40 (396)
T ss_pred CEEEECCC-Cc----hhH----HHHHHHHHHCCCEEEEEecCCCCCC------------------C-------------C
Confidence 58888654 44 233 3588999999999999998632110 0 0
Q ss_pred CceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH---HhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCC
Q 005005 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELL---LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (720)
Q Consensus 593 GVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL---~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ 669 (720)
||+++.+.+.. . ...+.+++.+..++.....++++..+ ...+++|||||+|.+.+.. ++++.. +.+
T Consensus 41 ~v~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~---~~l~~~----~~~ 109 (396)
T cd03818 41 GVRVVRYRPPR-G---PTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGET---LFLKDV----WPD 109 (396)
T ss_pred CeeEEEecCCC-C---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchh---hhHHHh----CCC
Confidence 45555555321 1 11134444334444333344444333 3458999999999754322 233222 235
Q ss_pred CCEEEEe
Q 005005 670 ARVCFTC 676 (720)
Q Consensus 670 iptVFTI 676 (720)
+|+|.++
T Consensus 110 ~~~v~~~ 116 (396)
T cd03818 110 APLIGYF 116 (396)
T ss_pred CCEEEEE
Confidence 7777554
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.69 E-value=0.00026 Score=70.28 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.7
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
||+||+. +.|. .||.+.++..|.++|++.||+|.++....
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 6899975 4554 79999999999999999999999998654
No 48
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00017 Score=84.47 Aligned_cols=170 Identities=21% Similarity=0.299 Sum_probs=115.2
Q ss_pred ccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccc-----cc--c-------------ccc-----eeeEEEEe
Q 005005 520 EMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQY-----DR--I-------------DDL-----RALDVVVE 574 (720)
Q Consensus 520 E~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~-----~~--v-------------~~L-----~~l~V~v~ 574 (720)
|..|..- ||||..++..-++++.+|...+.+-=+|.+--. ++ . ... .+.++++.
T Consensus 108 e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~ 186 (750)
T COG0058 108 ESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVP 186 (750)
T ss_pred ccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEE
Confidence 3467555 999999999999999999999988777754311 10 0 000 11222332
Q ss_pred eecCCceeEEEEEEEEeCCceEEecCCCCCC-CCCCCC---CCCCCcchHHHH---HHHHHHHHHHHHhcC------CCC
Q 005005 575 SYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRRF---SFFSRAALELLLQAG------KQP 641 (720)
Q Consensus 575 s~f~G~~~~v~Vw~~~vdGVpVYFID~~~Pe-~fF~R~---~IYG~~DDaeRF---afFSRAALElL~klg------~kP 641 (720)
. ++.....+++|...+.-+++||.+...|+ .-..|. .+|+.+....|+ .||+.|.+..+.+.+ +.+
T Consensus 187 g-~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds~elRl~Qeyfl~~agvq~I~~~~~~~~~~~~~ 265 (750)
T COG0058 187 G-YDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDSKELRLKQEYFLGSAGVQDILARGHLEHHDLDV 265 (750)
T ss_pred e-ccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCcHHHHHhhhheeeeHHHHHHHHHhhhccccccc
Confidence 2 12255678999998888899999875542 112222 578753255565 789999999988776 888
Q ss_pred cEEEECchhhhhHHHHHHHhhCc-CC--------CCCCCEEEEecCCCcccc--CCccchh
Q 005005 642 DIIHCHDWQTAFVAPLYWDLYVP-KG--------LNSARVCFTCHNFEYQGT--APAKELA 691 (720)
Q Consensus 642 DIIHcHDWHTALVaPLyLk~y~~-~g--------f~~iptVFTIHNLaYQGi--Fp~~~L~ 691 (720)
-+.|.||=|++|+.|-+.+.... .+ ....-++||.|.+...|+ ||.+.+.
T Consensus 266 ~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~ 326 (750)
T COG0058 266 LADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFK 326 (750)
T ss_pred hhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHH
Confidence 89999999999997777652211 11 123457999999988884 7776554
No 49
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.64 E-value=0.00022 Score=70.85 Aligned_cols=45 Identities=20% Similarity=0.080 Sum_probs=39.1
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
||++++.-..|. ..||.+.++..|.++|++.||.|.++++.....
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~ 45 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPG 45 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccc
Confidence 688888777775 689999999999999999999999999986533
No 50
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.60 E-value=0.0006 Score=69.75 Aligned_cols=118 Identities=15% Similarity=0.046 Sum_probs=64.0
Q ss_pred EEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCC
Q 005005 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 593 (720)
Q Consensus 514 ILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdG 593 (720)
|++.+.+ +||==.++..|.++|.++||+|.|+++.++.... . ....|
T Consensus 2 ~~~~~~~------~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~--------------------~-------~~~~~ 48 (350)
T cd03785 2 ILIAGGG------TGGHIFPALALAEELRERGAEVLFLGTKRGLEAR--------------------L-------VPKAG 48 (350)
T ss_pred EEEEecC------chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhh--------------------c-------ccccC
Confidence 5555544 4554456669999999999999999886431100 0 00136
Q ss_pred ceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHH---HHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCC
Q 005005 594 LPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFS---RAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 670 (720)
Q Consensus 594 VpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFS---RAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~i 670 (720)
++++.+... .+.+...+ .+...+.-|- +.+..+++ .++|||||+|.+.+++. ..+... ..++
T Consensus 49 ~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~--~~~pDvI~~~~~~~~~~-~~~~a~-----~~~~ 113 (350)
T cd03785 49 IPLHTIPVG----GLRRKGSL---KKLKAPFKLLKGVLQARKILK--KFKPDVVVGFGGYVSGP-VGLAAK-----LLGI 113 (350)
T ss_pred CceEEEEec----CcCCCChH---HHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCcchH-HHHHHH-----HhCC
Confidence 666666421 01111111 1111222122 23334444 46899999999877653 222221 1357
Q ss_pred CEEEEecCC
Q 005005 671 RVCFTCHNF 679 (720)
Q Consensus 671 ptVFTIHNL 679 (720)
|+|++.|+.
T Consensus 114 p~v~~~~~~ 122 (350)
T cd03785 114 PLVIHEQNA 122 (350)
T ss_pred CEEEEcCCC
Confidence 888877764
No 51
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.60 E-value=0.00054 Score=68.62 Aligned_cols=41 Identities=24% Similarity=0.448 Sum_probs=37.7
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||+|+..+.|. .||.+.++..|.++|.++||+|+|+++..
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 41 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASP 41 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 799999988886 79999999999999999999999998764
No 52
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.57 E-value=0.00047 Score=69.49 Aligned_cols=40 Identities=15% Similarity=0.398 Sum_probs=35.3
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||++++.-+ ..||...++..+.++|.+.||+|+++++...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 689988754 5799999999999999999999999998753
No 53
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.57 E-value=0.047 Score=65.35 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=26.7
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 005005 132 QLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (720)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~ 185 (720)
++..+..-|...+..+--+......+-..+..+-.+.+.+..++..++..+...
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~ 728 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565566666655555554444444444444444444444444444444333
No 54
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.55 E-value=0.00057 Score=67.66 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=38.0
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||++|+.-+.|. .||.+..+..|.++|++.||+|.++++...
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 699999888885 499999999999999999999999998754
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.47 E-value=0.072 Score=63.43 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHh
Q 005005 353 QELRKKVDKLEESLDEA 369 (720)
Q Consensus 353 ~~l~~~~d~l~~~l~~~ 369 (720)
.+|+.+++.|...+++-
T Consensus 968 ~~l~~~i~~lg~aiee~ 984 (1179)
T TIGR02168 968 EEARRRLKRLENKIKEL 984 (1179)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 35666666666655543
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.074 Score=63.04 Aligned_cols=119 Identities=19% Similarity=0.336 Sum_probs=62.4
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh------------------hhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD------------------ADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~------------------~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+-.+..+++.++++-..++.-+.+++..+..... ..+++..+......++..+.+||..+..
T Consensus 414 l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 493 (880)
T PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666655555555544431 1133334445555555556666666655
Q ss_pred chhhhhccccc---hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 005005 307 SQEDVAKLSTL---KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (720)
Q Consensus 307 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l 366 (720)
....+..+..+ +-+-..+.++++.++.+++....+.+.+ ......|+.++.+|++.+
T Consensus 494 ~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~---~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK---RERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence 55555444333 2333355666666666666544444433 233445666666665555
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.47 E-value=0.0011 Score=64.12 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=36.6
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||++++.-..| .||...++..|.++|++.||+|.++.+...
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 68999877666 799999999999999999999999998764
No 58
>PRK02224 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.056 Score=64.00 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHH--HHhhhhhhHHHhhhhchhhhhh
Q 005005 157 ALEDLHKILQEK--EALQGEINALEMRLAETDARIR 190 (720)
Q Consensus 157 a~~~~~~~~~ek--~~lq~~~~~l~~~l~e~~~~~~ 190 (720)
-+++++.-|.++ ..++..+..++.++++...++.
T Consensus 188 ~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 188 SLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555 4556666666666666655555
No 59
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.061 Score=67.15 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=71.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHH
Q 005005 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHE 212 (720)
Q Consensus 133 ~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (720)
++++-..+.....++-.++- -...+..+.++..|.+.++.+|.-|+..+..++.- ..++=+++++.++..+
T Consensus 767 le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--------~s~~ele~ei~~~~~e 837 (1311)
T TIGR00606 767 IEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--------RTVQQVNQEKQEKQHE 837 (1311)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CCHHHHHHHHHHHHHH
Confidence 44444444444444444433 34445555666666777777777776666655431 1334455555555555
Q ss_pred hhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 005005 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS 292 (720)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~ 292 (720)
+.. +..+++.+.++-..+++.|..|+.++.++.+....+..-...|..
T Consensus 838 l~~--------------------------------l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~ 885 (1311)
T TIGR00606 838 LDT--------------------------------VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885 (1311)
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 233344444444445555555555444444444333333345555
Q ss_pred HHhhHHHHHhhhhcchhhhhc
Q 005005 293 LESSLKELESKLSISQEDVAK 313 (720)
Q Consensus 293 l~~~~~~~e~~~~~~~~~~~~ 313 (720)
|+..|.+|...+....+.+.+
T Consensus 886 le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444443
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.43 E-value=0.0019 Score=62.95 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=34.2
Q ss_pred EEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 514 ILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||+++.-+.| ...||-+.++..+.++|++.||+|.|+.+...
T Consensus 1 iLii~~~~p~-~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 1 ILVISSLYPP-PNNGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CeEeccCCCC-CCCchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 5677655444 34699999999999999999999999998643
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.42 E-value=0.038 Score=61.80 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=38.5
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 005005 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSIS 307 (720)
Q Consensus 246 ~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~----~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~ 307 (720)
..+-.+++.+..+...++..++.++.++.++. +.++.+..++.+.+.+++.+..++.-....
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777777777776663 334445556666666666666665554433
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.41 E-value=0.023 Score=66.24 Aligned_cols=193 Identities=27% Similarity=0.399 Sum_probs=113.1
Q ss_pred HhhhhhhHHHhhhhchhhhhhHhhhhhh----hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc
Q 005005 170 ALQGEINALEMRLAETDARIRVAAQEKI----HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (720)
Q Consensus 170 ~lq~~~~~l~~~l~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (720)
.|+++...+.-|..+.-..+..-..+|. +|.-||.+|.+|++.++..... +.|.
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-----------~~pa----------- 76 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-----------EPPA----------- 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-----------cccc-----------
Confidence 3455555555555555555544444443 4667777788888887765322 1111
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 005005 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (720)
Q Consensus 246 ~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 325 (720)
..++.-..|..|=..|+..++.|..++......-+.+-.|-.| .+..|.+||.++..-++
T Consensus 77 -~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~E---qEerL~ELE~~le~~~e---------------- 136 (617)
T PF15070_consen 77 -GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQE---QEERLAELEEELERLQE---------------- 136 (617)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------------
Confidence 2233334566666667777888888887766666655555433 36667777766654333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH---HhHhh---hhhhchHHH------HHHHHHHHHHHHHH
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES---LDEAN---IYKLSSEKM------QQYNELMQQKMKLL 393 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~---l~~~~---~~~~~~~~~------~~~~~~~~~~~~~~ 393 (720)
..+....||+...+--.-|.-.+.||.+|..++..|+.. |-..| .+++.++.- .+|+ .|++++..+
T Consensus 137 -~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-~l~~~l~~~ 214 (617)
T PF15070_consen 137 -QQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG-ELQEKLHNL 214 (617)
T ss_pred -HHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 223344455443332223445689999999999999984 44444 455555422 1122 467777777
Q ss_pred HHHHhhchhhHHH
Q 005005 394 EERLQRSDEEIHS 406 (720)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (720)
++++...+.|+.+
T Consensus 215 ~e~le~K~qE~~~ 227 (617)
T PF15070_consen 215 KEKLELKSQEAQS 227 (617)
T ss_pred HHHHHhhhHHHHH
Confidence 7787777776655
No 63
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.40 E-value=0.17 Score=60.41 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=33.9
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhh
Q 005005 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDA 187 (720)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~ 187 (720)
..+.++-.=+...++-+.-+++....+-..+.++-.+.+.++.++..++..+.....
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 726 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666555555555666666666666666666665555433
No 64
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.34 E-value=0.00022 Score=82.06 Aligned_cols=153 Identities=19% Similarity=0.335 Sum_probs=74.1
Q ss_pred EecccCCccccCCHHHHHHHHHHHHH-HCCCeEEEEecCCCcccccccccceeeEEEEeeecCC-ceeEEEEEEEE--eC
Q 005005 517 IAAEMAPVAKVGGLGDVVAGLGKALQ-KKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG-RLFKNKVWVST--IE 592 (720)
Q Consensus 517 VSSE~aPfAKVGGLGDVVgsLPKALa-~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G-~~~~v~Vw~~~--vd 592 (720)
+|||+.- ||||.=.|+.+=++.++ +.|-+..+|-|.+..-...++..+....-.+...... ....++|..|. ++
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~GRWlI~ 79 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRYGRWLIP 79 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEEEEESST
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEEeceeEC
Confidence 6889877 89999999998777765 4688999999976542111111000000000000000 00012333343 56
Q ss_pred CceEE-ecCCCCCCCCCCC--------------CCC--CCCcchHHHHHHHHHHHHHHHHhc-CCCCcE-EEECchhhhh
Q 005005 593 GLPVY-FIEPHHPDKFFWR--------------GQF--YGEHDDFRRFSFFSRAALELLLQA-GKQPDI-IHCHDWQTAF 653 (720)
Q Consensus 593 GVpVY-FID~~~Pe~fF~R--------------~~I--YG~~DDaeRFafFSRAALElL~kl-g~kPDI-IHcHDWHTAL 653 (720)
|.|.+ ++|.. .+|.+ +.+ |++.+++.-|++.+..+++-+... ...+.| .|+|.|+||+
T Consensus 80 G~P~vIL~D~~---s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWmaG~ 156 (633)
T PF05693_consen 80 GRPIVILFDFG---SFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMAGV 156 (633)
T ss_dssp T--EEEEEEGG---GGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGGTT
T ss_pred CcCeEEEEeCc---hHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhHhH
Confidence 86654 45532 13322 111 222345444444443333333222 224554 5999999998
Q ss_pred HHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 654 VAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 654 VaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
. .++++... ..+.||||.|..
T Consensus 157 g-ll~lr~~~----~~VaTvFTTHAT 177 (633)
T PF05693_consen 157 G-LLYLRKRK----PDVATVFTTHAT 177 (633)
T ss_dssp H-HHHHHHTT-----SCEEEEEESS-
T ss_pred H-HHHHhccC----CCeeEEEEeccc
Confidence 6 45554322 368999999976
No 65
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.32 E-value=0.0017 Score=62.86 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=34.9
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||++++..+. .||.+.++..|.++|.+.||+|.|+++...
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 6888877543 799999999999999999999999998754
No 66
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.31 E-value=0.0013 Score=68.77 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=36.1
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHC--CCeEEEEecCCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYD 556 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l--GhEV~VILPkY~ 556 (720)
|||+|++. ..| ..||...++..|.++|.+. |++|.++.|..+
T Consensus 1 mkI~~~~~-~~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGE-AVS--GFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecc-ccc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 89999964 444 3599999999999999999 899999998754
No 67
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.28 E-value=0.0022 Score=64.26 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=32.1
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
||+||+..+.| |-..++..+.++|.++||+|.|+.+..+
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 69999876544 2557899999999999999999998754
No 68
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.27 E-value=0.13 Score=61.67 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH
Q 005005 385 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTL 422 (720)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 422 (720)
.++.++..++.++...+.-=..-+.-|....+++....
T Consensus 955 ~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~ 992 (1164)
T TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992 (1164)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 45566666666666554422233455555555554433
No 69
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.24 E-value=0.0017 Score=69.14 Aligned_cols=124 Identities=11% Similarity=0.072 Sum_probs=74.0
Q ss_pred ceEEEEecccC--CccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEE
Q 005005 512 LHVIHIAAEMA--PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (720)
Q Consensus 512 MKILfVSSE~a--PfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~ 589 (720)
-||+|+++|-. |-...||...++..+.+.|++ +|+|++-..+.++... .
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~--------------------------~ 53 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYT--------------------------K 53 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchh--------------------------h
Confidence 38999999964 445699999999999999954 9999876554322100 1
Q ss_pred EeCCceEEecCCCCCCCCCCC--CCCCCCcchHHHHHHHHHHHHHHHHhc-CCCCcEEEECchhhhhHHHHHHHhhCcCC
Q 005005 590 TIEGLPVYFIEPHHPDKFFWR--GQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKG 666 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R--~~IYG~~DDaeRFafFSRAALElL~kl-g~kPDIIHcHDWHTALVaPLyLk~y~~~g 666 (720)
..+|+.+..+... . .+.+ +..+. .+..-|+...+.++... +..+||||+|+ +..+. ..+...
T Consensus 54 ~~~~~~~~~~~~~--~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vi~v~~-~~~~~-~~~~~~----- 118 (380)
T PRK15484 54 VNDNCDIHYIGFS--R-IYKRLFQKWTR-----LDPLPYSQRILNIAHKFTITKDSVIVIHN-SMKLY-RQIRER----- 118 (380)
T ss_pred ccCCCceEEEEec--c-ccchhhhhhhc-----cCchhHHHHHHHHHHhcCCCCCcEEEEeC-cHHhH-HHHHhh-----
Confidence 1245555555321 1 1111 00010 02234556666666554 46799999999 32332 222221
Q ss_pred CCCCCEEEEecCC
Q 005005 667 LNSARVCFTCHNF 679 (720)
Q Consensus 667 f~~iptVFTIHNL 679 (720)
+.++|+|+|+||.
T Consensus 119 ~~~~~~v~~~h~~ 131 (380)
T PRK15484 119 APQAKLVMHMHNA 131 (380)
T ss_pred CCCCCEEEEEecc
Confidence 3468999999987
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=97.22 E-value=0.2 Score=59.26 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhHHhh
Q 005005 409 QLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~~~ 429 (720)
.-|+..+.+.+.-+..|+++-
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666644
No 71
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=97.22 E-value=0.0072 Score=60.76 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=82.8
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEE
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~ 590 (720)
|-||.+|.+--.| ++-||-..+|..|...|+++|++|+|.+.....- .. ...
T Consensus 1 mkkIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~-~~--------------------------~~~ 52 (185)
T PF09314_consen 1 MKKIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYP-YK--------------------------EFE 52 (185)
T ss_pred CceEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCC-CC--------------------------Ccc
Confidence 4589999999999 7899999999999999999999999998753211 10 012
Q ss_pred eCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH---HhcCCCCcEEEECchhh-hhHHHHHHHhhCcCC
Q 005005 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELL---LQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKG 666 (720)
Q Consensus 591 vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL---~klg~kPDIIHcHDWHT-ALVaPLyLk~y~~~g 666 (720)
..|+.+..|..+ . .+ -+.-+.+...|....+ +.-..+.||||+|---+ +++.|++.. +.
T Consensus 53 y~gv~l~~i~~~--~----~g-------~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~--- 115 (185)
T PF09314_consen 53 YNGVRLVYIPAP--K----NG-------SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LR--- 115 (185)
T ss_pred cCCeEEEEeCCC--C----CC-------chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hh---
Confidence 356666666422 1 11 0122333333433333 33346789999998773 555444432 21
Q ss_pred CCCCCEEEEecCCCccc
Q 005005 667 LNSARVCFTCHNFEYQG 683 (720)
Q Consensus 667 f~~iptVFTIHNLaYQG 683 (720)
..+.|+++++|.+++.-
T Consensus 116 ~~g~~v~vN~DGlEWkR 132 (185)
T PF09314_consen 116 KKGGKVVVNMDGLEWKR 132 (185)
T ss_pred hcCCcEEECCCcchhhh
Confidence 13569999999998764
No 72
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.09 E-value=0.0071 Score=65.39 Aligned_cols=38 Identities=18% Similarity=0.009 Sum_probs=28.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
-+|.+++.= -+|-.--+..++++|++.||+|+||++..
T Consensus 4 ~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 4 KRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred cEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 456666652 24444556789999999999999998754
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.02 E-value=0.15 Score=58.80 Aligned_cols=178 Identities=20% Similarity=0.280 Sum_probs=89.8
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh-------hHHHHH--Hhhhhh------HHhhHHHHHhhhhcchhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD-------ERVVML--EMERSS------LESSLKELESKLSISQEDV 311 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~-------~~~~~~--~~e~~~------l~~~~~~~e~~~~~~~~~~ 311 (720)
.+.+|.+.|+.++..++..|..|...+..+.... .++..+ ++|... |...+.+++..+..++..-
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~ 282 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ 282 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4566666666666655555555555544433222 112111 222222 3333334444444455555
Q ss_pred hccccchhhhhhHHH-------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh-hhhchHHHHHHH
Q 005005 312 AKLSTLKVECKDLYE-------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI-YKLSSEKMQQYN 383 (720)
Q Consensus 312 ~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~-~~~~~~~~~~~~ 383 (720)
.++..|+.++..+-+ +++-|..-|..|.+.-|+.+.-|-+ -|-+++.|...|.+|.. .|....+..+.-
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~---aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQ---ARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444433 3444555566666666666554432 22334444444444432 112222333444
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
..+++-+..-+++++.-..|+...=+-|++.-.|-|..=-.|.+
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667777777777777777777777666644344433
No 74
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.17 Score=63.25 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=89.4
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (720)
...++.+..|-..++..|+.|..++..... +..+..++.|...++..+..+..++...++...++ +.+...|.++.
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~---~~eI~~Lq~ki 866 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ---QEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334456667777777888888887775544 44667777777777777777766666555544332 33333444444
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh--h--hhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--Y--KLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 329 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
.++.....+..+ .+++-++|...++.|.+.+++... . +-..+.+++..+.++.+...+..+.+..-++.
T Consensus 867 ~el~~~klkl~~-------~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1311)
T TIGR00606 867 NELKSEKLQIGT-------NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939 (1311)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333 445666677777666666654422 1 11222233333333444444444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 005005 405 HSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
+..++.|+..+..++.....+.
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444433
No 75
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.11 Score=63.20 Aligned_cols=254 Identities=24% Similarity=0.290 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcc
Q 005005 156 QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN 235 (720)
Q Consensus 156 ~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (720)
.+|+++..+-.+.++.|.+++.+|..|+.+ -+.+.|++ .+..||+-..++|+.-.-.
T Consensus 674 ~~l~~l~~~~~~~~~~q~el~~le~eL~~l-----e~~~~kf~--~l~~ql~l~~~~l~l~~~r---------------- 730 (1174)
T KOG0933|consen 674 RQLQKLKQAQKELRAIQKELEALERELKSL-----EAQSQKFR--DLKQQLELKLHELALLEKR---------------- 730 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHH----------------
Confidence 456666666777888888888888888877 44555555 5788888888888763111
Q ss_pred cccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh----HHhhHHHHHhhhhcchhhh
Q 005005 236 EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS----LESSLKELESKLSISQEDV 311 (720)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~----l~~~~~~~e~~~~~~~~~~ 311 (720)
...+.-|-+..++..++++=-.+++.| |+..-.+++-++-+.++|+--.- =++.|+||+..+-.+-.-
T Consensus 731 ----~~~~e~~~~~~~~~~~~e~v~e~~~~I---ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~- 802 (1174)
T KOG0933|consen 731 ----LEQNEFHKLLDDLKELLEEVEESEQQI---KEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR- 802 (1174)
T ss_pred ----HhcChHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH-
Confidence 112223444555555444432222222 22223334444445555542211 233444444444332221
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh-hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHH
Q 005005 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVL-QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (720)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (720)
-.+...-|+|-++.-..|---..+..+++..+ +|.+.+.++++.|++.+...-. ...+.+.-..-.|+++
T Consensus 803 ------~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~---kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 803 ------AEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA---KVDKVEKDVKKAQAEL 873 (1174)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHhHHHHHHHHH
Confidence 11222334444443333333333444444333 3456677788888887765432 2344455678899999
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhh
Q 005005 391 KLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGW 456 (720)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~ 456 (720)
+....++..+|.+|...+...+.-..+.+++- -+.++ +++-+..|+.+-=. +--.|+.+
T Consensus 874 ~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~----l~~kk--le~e~~~~~~e~~~-~~k~v~~l 932 (1174)
T KOG0933|consen 874 KDQKAKQRDIDTEISGLLTSQEKCLSEKSDGE----LERKK--LEHEVTKLESEKAN-ARKEVEKL 932 (1174)
T ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHhhccc----chHHH--HHhHHHHhhhhHHH-HHHHHHHH
Confidence 99999999999999887766555555555443 33333 55666667766533 44555554
No 76
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.89 E-value=0.01 Score=70.62 Aligned_cols=173 Identities=22% Similarity=0.287 Sum_probs=99.9
Q ss_pred cccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccc-------c---------ccc---eeeEEEEeeecCC
Q 005005 519 AEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR-------I---------DDL---RALDVVVESYFDG 579 (720)
Q Consensus 519 SE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~-------v---------~~L---~~l~V~v~s~f~G 579 (720)
.|--|-.-.||||..++..-++++.+|....-+-=+|..--..+ + ... ...+..+...|.|
T Consensus 98 ~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G 177 (797)
T cd04300 98 QEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGG 177 (797)
T ss_pred cCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCCCceEecCCcEEEEEECC
Confidence 45566677999999999999999999999988876665431110 0 000 0001222233444
Q ss_pred ceeEEE-------EEE-----------EEeCC------ceEEecCCCCCC----CCCCCC-----------------CCC
Q 005005 580 RLFKNK-------VWV-----------STIEG------LPVYFIEPHHPD----KFFWRG-----------------QFY 614 (720)
Q Consensus 580 ~~~~v~-------Vw~-----------~~vdG------VpVYFID~~~Pe----~fF~R~-----------------~IY 614 (720)
...... +|. ..+.| +++++.+...+. ..|.++ .+|
T Consensus 178 ~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LY 257 (797)
T cd04300 178 RVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEASEEFDLDAFNRGDYIRAVEEKNRAENISKVLY 257 (797)
T ss_pred EEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEeeCCCCcCHHHhcCCchhhHHhhHHHhhhhhcccC
Confidence 332211 333 11222 344444432222 123222 366
Q ss_pred CCcc----hHHH---HHHHHHHHHHHH-Hhc--------CC-CCcEEEECchhhhhHHHHHHHhhCcC-C--------CC
Q 005005 615 GEHD----DFRR---FSFFSRAALELL-LQA--------GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LN 668 (720)
Q Consensus 615 G~~D----DaeR---FafFSRAALElL-~kl--------g~-kPDIIHcHDWHTALVaPLyLk~y~~~-g--------f~ 668 (720)
+.+. ...| -.||+-|.+..+ +.. ++ .|.+||.||=|++++.|-+++..... + ..
T Consensus 258 p~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~~~~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~ 337 (797)
T cd04300 258 PNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTHGPLSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDIT 337 (797)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCChhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6420 2234 378898888774 333 23 78999999999999988777544321 1 13
Q ss_pred CCCEEEEecCCCcccc--CCccchh
Q 005005 669 SARVCFTCHNFEYQGT--APAKELA 691 (720)
Q Consensus 669 ~iptVFTIHNLaYQGi--Fp~~~L~ 691 (720)
...++||-|++-..|. ||.+.+.
T Consensus 338 ~~~~~yTnHT~lpealE~wp~~l~~ 362 (797)
T cd04300 338 TKTFAYTNHTLLPEALEKWPVDLFE 362 (797)
T ss_pred HhheeeecCCCchHHhCccCHHHHH
Confidence 3468999999987773 6666543
No 77
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.85 E-value=1 Score=56.08 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcchhhhHhhhhhchHH
Q 005005 435 HEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHE 495 (720)
Q Consensus 435 ~~~~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~~~e 495 (720)
-.||+-.--+-|.++.-|.+.+.-...=-.+....|++.+=+-+.....+|+..+..-..+
T Consensus 961 lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~ 1021 (1163)
T COG1196 961 LGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINEN 1021 (1163)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566644345577777777776432221122336677766666777777777665544433
No 78
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.84 E-value=0.0041 Score=63.33 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=28.9
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
+||++++-++|. -+..+..+.++|. |++|.++....
T Consensus 1 ~~~~~~~~~~~~-----~e~~~~~~~~~l~--~~~~~~~~~~~ 36 (367)
T cd05844 1 RVLIFRPLLLAP-----SETFVRNQAEALR--RFRPVYVGGRR 36 (367)
T ss_pred CEEEEeCCCCCC-----chHHHHHHHHhcc--cCCcEEEEeec
Confidence 689998888775 6779999999995 78888887653
No 79
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.80 E-value=1.5 Score=54.69 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 005005 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (720)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (720)
.+-|..++..++.++.....++..+..-+.
T Consensus 886 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 886 KEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777766666666555444
No 80
>PRK03918 chromosome segregation protein; Provisional
Probab=96.76 E-value=1.3 Score=52.69 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=9.0
Q ss_pred CCEEEEecCCCcc
Q 005005 670 ARVCFTCHNFEYQ 682 (720)
Q Consensus 670 iptVFTIHNLaYQ 682 (720)
..++++-|+..+.
T Consensus 845 ~~iiiith~~~~~ 857 (880)
T PRK03918 845 PQVIIVSHDEELK 857 (880)
T ss_pred CEEEEEECCHHHH
Confidence 4578888987654
No 81
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=96.75 E-value=0.0092 Score=70.99 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=97.2
Q ss_pred ecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCccc--cc---c--------c---ccce---eeEEEEeeecC
Q 005005 518 AAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQ--YD---R--------I---DDLR---ALDVVVESYFD 578 (720)
Q Consensus 518 SSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~--~~---~--------v---~~L~---~l~V~v~s~f~ 578 (720)
..|.-|-.-.||||..++..-++++.+|....-+-=+|..-- +. + . ...- ..+..+...|.
T Consensus 103 ~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~ 182 (798)
T PRK14985 103 EEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIG 182 (798)
T ss_pred ccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCCcccCCCCceecCCCceEEEeeC
Confidence 356667778999999999999999999999988866665431 10 0 0 0000 01122222334
Q ss_pred CceeEE---EEEE------E-----EeCC------ceEEecCCCCCC----CCCCCC-----------------CCCCCc
Q 005005 579 GRLFKN---KVWV------S-----TIEG------LPVYFIEPHHPD----KFFWRG-----------------QFYGEH 617 (720)
Q Consensus 579 G~~~~v---~Vw~------~-----~vdG------VpVYFID~~~Pe----~fF~R~-----------------~IYG~~ 617 (720)
|..... .+|. + .+.| +++++.+..... ..|+++ .+|+.+
T Consensus 183 G~v~~~~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~~~~~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D 262 (798)
T PRK14985 183 GKVTKQDGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPND 262 (798)
T ss_pred CEEEeeCCcEEEECCEEEEEEeccccccCCCCCceEEEEEeEcCCCCccCHHHcCCcchhhccccchhhcchhceecCCC
Confidence 432110 1232 1 0112 233333321100 112221 356542
Q ss_pred c----hHHHH---HHHHHHHHH-HHH-------hc-CC-CCcEEEECchhhhhHHHHHHHhhCcC-C--------CCCCC
Q 005005 618 D----DFRRF---SFFSRAALE-LLL-------QA-GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSAR 671 (720)
Q Consensus 618 D----DaeRF---afFSRAALE-lL~-------kl-g~-kPDIIHcHDWHTALVaPLyLk~y~~~-g--------f~~ip 671 (720)
. -..|. .||+-|.+. +++ .+ +. .|.+||+||=|++|+.|-+++..... + ..+..
T Consensus 263 ~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~ 342 (798)
T PRK14985 263 NHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKT 342 (798)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 1 13343 788888876 541 12 23 78899999999999988777544321 1 13446
Q ss_pred EEEEecCCCcccc--CCccchh
Q 005005 672 VCFTCHNFEYQGT--APAKELA 691 (720)
Q Consensus 672 tVFTIHNLaYQGi--Fp~~~L~ 691 (720)
++||-|++-..|. ||.+.+.
T Consensus 343 ~~yTnHT~lpealE~w~~~l~~ 364 (798)
T PRK14985 343 FAYTNHTLMPEALECWDEKLVK 364 (798)
T ss_pred eeeecCCCChhhhCCCCHHHHH
Confidence 8999999988884 6666554
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.73 E-value=0.54 Score=49.25 Aligned_cols=164 Identities=22% Similarity=0.371 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccccc
Q 005005 161 LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL 240 (720)
Q Consensus 161 ~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (720)
++.+-.||..|+.+++.+...+.+...++.-... ...-++.++.+||+++-..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~---~~~~le~el~~lrk~ld~~------------------------ 115 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELA---ERKDLEEELESLRKDLDEE------------------------ 115 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------------------------
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhhh------------------------
Confidence 4445555555555555555555554444333222 2335678888888766542
Q ss_pred CCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhh-hhhhhhHHH---HHH---hhhhhHHhhHHHHHhhhhcchhhhhc
Q 005005 241 NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS-VKDADERVV---MLE---MERSSLESSLKELESKLSISQEDVAK 313 (720)
Q Consensus 241 ~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~-~~~~~~~~~---~~~---~e~~~l~~~~~~~e~~~~~~~~~~~~ 313 (720)
+..-..|..+-..|+++|.|+|..-.. +.+....+. ..+ .-...|.++|+++-..+.. .
T Consensus 116 --------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~------~ 181 (312)
T PF00038_consen 116 --------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEE------I 181 (312)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHH------H
T ss_pred --------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHH------H
Confidence 333344555555566666666653222 222222221 111 1133477777776544421 1
Q ss_pred cccchhhhhhHHH-HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH
Q 005005 314 LSTLKVECKDLYE-KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 314 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~ 368 (720)
+..-+.|+..||. |++.++.-.... .+.+-.+-....+++.+++.|+.-|..
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~---~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKS---SEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccccccc---ccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 1222334446654 566666555543 333333455666777777777665543
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.73 E-value=0.37 Score=58.80 Aligned_cols=186 Identities=24% Similarity=0.342 Sum_probs=122.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDL 324 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~ 324 (720)
--.+..||+-|..|-+.-++||.+|...-.-.+- +.+|+|---|...+.+|++....-|.-..+| ++|+..-..|
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678999999999999999999877555544 8899999999999999998887766555543 4555444333
Q ss_pred ---HHHHHH-----------HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHH
Q 005005 325 ---YEKVEN-----------LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (720)
Q Consensus 325 ---~~~~~~-----------l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (720)
|+-..+ +|..-...|. +.|.-.+=+|+.+-.-+..+.++==|++|+|...-+ ..+..|--|+
T Consensus 342 ~~~~ellq~~se~~E~en~Sl~~e~eqLts--~ralkllLEnrrlt~tleelqsss~Ee~~SK~lele--ke~KnLs~k~ 417 (1195)
T KOG4643|consen 342 DGQMELLQIFSENEELENESLQVENEQLTS--DRALKLLLENRRLTGTLEELQSSSYEELISKHLELE--KEHKNLSKKH 417 (1195)
T ss_pred hhhhhHhhhhhcchhhhhhhHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhHhHhHHH
Confidence 443333 3333333333 668888999999999999999988888888865422 1222222233
Q ss_pred HHHHHHHhhc--------------------------------------hhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 005005 391 KLLEERLQRS--------------------------------------DEEIHSYVQLYQESVKEFQDTLHSLKEESKKR 432 (720)
Q Consensus 391 ~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 432 (720)
+.||+|+... .++..--+.+|.+-+++.-..+..+|+..+.
T Consensus 418 e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~- 496 (1195)
T KOG4643|consen 418 EILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKS- 496 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333332222 1222333556677777777777777777776
Q ss_pred ccCCCCCCC
Q 005005 433 AVHEPVDDM 441 (720)
Q Consensus 433 ~~~~~~~~~ 441 (720)
++...++.
T Consensus 497 -L~~r~~el 504 (1195)
T KOG4643|consen 497 -LNNRDLEL 504 (1195)
T ss_pred -HHHHHHHH
Confidence 77777666
No 84
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.58 E-value=0.011 Score=64.24 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=30.8
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||.||..++.-+. ..++..=-.+|.++||+|.++.-+
T Consensus 1 m~ia~~~~~~P~~s-----etFi~~ei~~l~~~G~~v~~~s~~ 38 (406)
T PRK15427 1 MKVGFFLLKFPLSS-----ETFVLNQITAFIDMGFEVEIVALQ 38 (406)
T ss_pred CeEEEEeccCCccc-----hhhHHHHHHHHHHcCceEEEEEcc
Confidence 89999999965443 457777778999999999999654
No 85
>PRK14986 glycogen phosphorylase; Provisional
Probab=96.57 E-value=0.012 Score=70.12 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHH---HHHHHHHHHHH--------Hhc-CC-CCcEEEECchhhhhHHHHHHHhhCcC-C--------CCCCCEEEEec
Q 005005 620 FRRF---SFFSRAALELL--------LQA-GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCH 677 (720)
Q Consensus 620 aeRF---afFSRAALElL--------~kl-g~-kPDIIHcHDWHTALVaPLyLk~y~~~-g--------f~~iptVFTIH 677 (720)
..|. .||+-|.+..+ ..+ +. .+-+||.||=|++|+.|-+++..... + ..+..++||-|
T Consensus 280 ~lRLkQEyfl~~agv~di~r~~~~~~~~l~~l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnH 359 (815)
T PRK14986 280 ELRLRQEYFLVSATVQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNH 359 (815)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhCCCHhhCCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecc
Confidence 4455 78999988754 111 22 45599999999999987776544321 1 13456899999
Q ss_pred CCCcccc--CCccchh
Q 005005 678 NFEYQGT--APAKELA 691 (720)
Q Consensus 678 NLaYQGi--Fp~~~L~ 691 (720)
++...|. ||.+.+.
T Consensus 360 T~lpealE~w~~~l~~ 375 (815)
T PRK14986 360 TLMSEALETWPVDMLG 375 (815)
T ss_pred cCChHHhCcCCHHHHH
Confidence 9988884 6666554
No 86
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=96.51 E-value=0.01 Score=70.54 Aligned_cols=173 Identities=21% Similarity=0.277 Sum_probs=97.4
Q ss_pred cccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCccc--cc---c--c---------ccc---eeeEEEEeeecCC
Q 005005 519 AEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQ--YD---R--I---------DDL---RALDVVVESYFDG 579 (720)
Q Consensus 519 SE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~--~~---~--v---------~~L---~~l~V~v~s~f~G 579 (720)
.|.-|-.-.||||..++..-++++.+|....-+-=+|..-- +. + + ... ...+..+...|.|
T Consensus 95 ~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G 174 (794)
T TIGR02093 95 IENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGG 174 (794)
T ss_pred cCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcCCCCCCceeecCCcEEEEEeCC
Confidence 45667677999999999999999999999988866665431 11 0 0 000 0011122233444
Q ss_pred ceeE-------EEEEEE-----------EeCC------ceEEecCCCCCC----CCCCCC-----------------CCC
Q 005005 580 RLFK-------NKVWVS-----------TIEG------LPVYFIEPHHPD----KFFWRG-----------------QFY 614 (720)
Q Consensus 580 ~~~~-------v~Vw~~-----------~vdG------VpVYFID~~~Pe----~fF~R~-----------------~IY 614 (720)
.... ..+|.+ .+.| +++++.+...+. ..|+++ .+|
T Consensus 175 ~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLY 254 (794)
T TIGR02093 175 RVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAEAPEEFDLDAFNAGDYYEAVEEKNRAENISRVLY 254 (794)
T ss_pred EEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEEEEecCccccCHhhccCccHhhhhhChhhcCccccCCc
Confidence 2210 011111 1112 233333322111 133333 255
Q ss_pred CCcc----hHHHH---HHHHHHHHHHH-Hhc--------CC-CCcEEEECchhhhhHHHHHHHhhCcC-C--------CC
Q 005005 615 GEHD----DFRRF---SFFSRAALELL-LQA--------GK-QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LN 668 (720)
Q Consensus 615 G~~D----DaeRF---afFSRAALElL-~kl--------g~-kPDIIHcHDWHTALVaPLyLk~y~~~-g--------f~ 668 (720)
+.+. ...|. .||+-|.+..+ +.. +. .|.+||+||=|++|+.|-+++..... + ..
T Consensus 255 p~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~~~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv 334 (794)
T TIGR02093 255 PNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETHPDLSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDIT 334 (794)
T ss_pred CCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhCCChhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5321 23343 68888888743 322 23 78899999999999988777544321 1 13
Q ss_pred CCCEEEEecCCCcccc--CCccchh
Q 005005 669 SARVCFTCHNFEYQGT--APAKELA 691 (720)
Q Consensus 669 ~iptVFTIHNLaYQGi--Fp~~~L~ 691 (720)
+.-++||-|++-..|. ||.+.+.
T Consensus 335 ~~~~~yTnHT~lpealE~wp~~l~~ 359 (794)
T TIGR02093 335 TKTFAYTNHTLLPEALEKWPVDLFQ 359 (794)
T ss_pred HhheecccCCCChHHhCCcCHHHHH
Confidence 3457999999988774 6666554
No 87
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.46 E-value=0.44 Score=61.90 Aligned_cols=135 Identities=22% Similarity=0.363 Sum_probs=102.6
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 005005 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 357 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 357 (720)
.--+....|+..|..|+..++||..+|..+-.-+.+-+...+- .|-.+|-.|+..|+..+..--.++-.+ .-..+
T Consensus 1762 ~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~--~Learir~LE~~l~~E~~~~~e~~k~~---rk~er 1836 (1930)
T KOG0161|consen 1762 KEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIA--KLEARIRELESELEGEQRRKAEAIKGL---RKKER 1836 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHHHHHhHhhhhhHHHhHHH---HHHHH
Confidence 3345567788888899999999999999988888777775553 678899999999999887766554433 34556
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 005005 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (720)
Q Consensus 358 ~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (720)
+|-.|+.-+++ .+..-+.+|...+.+++|++.+.-.+.+..++..++..-|...--+.++
T Consensus 1837 ~vkEl~~q~ee---d~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~ 1896 (1930)
T KOG0161|consen 1837 RVKELQFQVEE---DKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEE 1896 (1930)
T ss_pred HHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655 4666778888999999999999999988888888876665555444444
No 88
>PRK11637 AmiB activator; Provisional
Probab=96.46 E-value=0.36 Score=53.43 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=57.4
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHH
Q 005005 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKL 209 (720)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (720)
.-+|+++-.-|+..++.|--+....-.+...+..+-.+.+.++.+|+.++..+++++.+|.-..+ .+.-++++++.+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~---eI~~~q~~l~~~ 122 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA---SIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34677777777777777777777777777777777777777788888777777777777765433 233455555555
Q ss_pred HHHhhhc
Q 005005 210 QHELTHR 216 (720)
Q Consensus 210 ~~~~~~~ 216 (720)
+..|..+
T Consensus 123 ~~~l~~r 129 (428)
T PRK11637 123 ERLLAAQ 129 (428)
T ss_pred HHHHHHH
Confidence 5555543
No 89
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.45 E-value=0.49 Score=56.88 Aligned_cols=256 Identities=20% Similarity=0.317 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccc
Q 005005 157 ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (720)
Q Consensus 157 a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (720)
|.+.+..+-+|.|.++.++..|...+-++..+|.---+ ..+-..+++++|.-.|-..|.+-..+.. . .....
T Consensus 112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~---~l~~~~eei~kL~e~L~~~g~~~~~~~~----~-~~~~~ 183 (775)
T PF10174_consen 112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQ---TLDKADEEIEKLQEMLQSKGLSAEAEEE----D-NEALR 183 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCcccchhh----h-hHHHH
Confidence 34556666778888888888888888777666543333 2335567888888888666655311111 0 00111
Q ss_pred ccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh----------hhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----------KDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~----------~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
........++.|-..+.....+++.++..+..-=+...+- -.-|..+..+||--..|+.-+.-|.++...
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1122234455555556666667766655433211111111 112345555666555567777777777766
Q ss_pred chhhhh----ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHH
Q 005005 307 SQEDVA----KLSTLKVECKDLYEKVENLQGLLAKATKQADQA----ISVLQQNQELRKKVDKLEESLDEANIYKLSSEK 378 (720)
Q Consensus 307 ~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~ 378 (720)
|.+|-. .+..-+-.++..=.|++.+..-|.+..-.-.-. -..-.++.|.|.-+|.|++||..+.- ..+.
T Consensus 264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~---~~~~ 340 (775)
T PF10174_consen 264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ---EAEM 340 (775)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 666533 334444455555555776666666543111111 12345888999999999999987653 3466
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---chhhHHHHHHHHHHHHHHHHHHHH
Q 005005 379 MQQYNELMQQKMKLLEERLQR---SDEEIHSYVQLYQESVKEFQDTLH 423 (720)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 423 (720)
||.-+|.|+.++..-+..+.. +-..++.-...|+..|.+..+.++
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776655544332 223334444445555555544444
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.39 E-value=1.9 Score=48.44 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=8.5
Q ss_pred HHHHHHHH-CCCeEEEEecC
Q 005005 536 GLGKALQK-KGHLVEIVLPK 554 (720)
Q Consensus 536 sLPKALa~-lGhEV~VILPk 554 (720)
.+.+.|.+ .|..|.++...
T Consensus 517 ~~~~~l~~~~~~~iiiish~ 536 (562)
T PHA02562 517 ALLSILDSLKDTNVFVISHK 536 (562)
T ss_pred HHHHHHHhCCCCeEEEEECc
Confidence 34444444 34445555443
No 91
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.36 E-value=2.1 Score=56.03 Aligned_cols=115 Identities=32% Similarity=0.428 Sum_probs=69.9
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhH--------HHHHHhh---hhhHHhhHHHHHhhhhcchhhh
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER--------VVMLEME---RSSLESSLKELESKLSISQEDV 311 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~--------~~~~~~e---~~~l~~~~~~~e~~~~~~~~~~ 311 (720)
+.+-.|.+|=..+.+-+..|.+|++..+.+....+..-.+ -..||+| |..++...+.||..+..+|+.+
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~ 1057 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344666666667777777778887777776665544332 2334444 4458888899999998888888
Q ss_pred hccccch-----------hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 005005 312 AKLSTLK-----------VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (720)
Q Consensus 312 ~~~~~~~-----------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~ 367 (720)
..+...+ .|--.+..+++.++.++..+++++. +|+..++.|+++|+
T Consensus 1058 ~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~----------eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK----------ELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 7544332 2233344555666666665555543 44555555555554
No 92
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.32 E-value=1.6 Score=50.79 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHhhHHhhhhhccCCCCCCCCHHHHHH
Q 005005 403 EIHSYVQLYQESVKEF----QDTLHSLKEESKKRAVHEPVDDMPWEFWSR 448 (720)
Q Consensus 403 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~ 448 (720)
|.++.+++-|..-+.+ |+.++-+.....+ .+....+.|++
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r------~~~~~~~~~~~ 464 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQR------LDKVADEKWKE 464 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhhhhc
Confidence 5666666666544333 3444444333333 33345556663
No 93
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.26 E-value=2.3 Score=53.36 Aligned_cols=153 Identities=19% Similarity=0.310 Sum_probs=86.6
Q ss_pred cchhhHhhhhhhhhhhcc-hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 005005 245 IHSFSKELDSLKTENLSL-KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~-k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 323 (720)
+-....+|+.+.+.-.-- +.||+.+...++...+....+..+.++...|.++..++|+++..-...+..- +.-.+..
T Consensus 322 l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~--~~~~~~~ 399 (1201)
T PF12128_consen 322 LARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEA--FNRQQER 399 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 334455666665544443 4489999999999999999999999999999999999999987754433211 1112224
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhh---------hHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHH
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQ---------NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~---------~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (720)
.-++...++.-.+....+.+.+..-+.+ .++++.+...++..+.+....--+ .++.+-..+.+..++
T Consensus 400 ~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~e~~~~~~~~~ 475 (1201)
T PF12128_consen 400 LQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKN----PQYTEEEKEQLEQAD 475 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----cCCCHHHHHHHHHHH
Confidence 4445555555555544444444333321 223334444444444444332111 123444555555566
Q ss_pred HHHhhchhh
Q 005005 395 ERLQRSDEE 403 (720)
Q Consensus 395 ~~~~~~~~~ 403 (720)
.++....++
T Consensus 476 ~~~~~a~~~ 484 (1201)
T PF12128_consen 476 KRLEQAQEQ 484 (1201)
T ss_pred HHHHHHHHH
Confidence 666554443
No 94
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.22 E-value=2.6 Score=51.44 Aligned_cols=197 Identities=26% Similarity=0.383 Sum_probs=109.8
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 005005 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (720)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~ 276 (720)
.+++=||-.||-|+.|+...|++- ... -+-+|..|..-|..||+.+-.|+.-..+-
T Consensus 339 Er~deletdlEILKaEmeekG~~~-~~~-----------------------ss~qfkqlEqqN~rLKdalVrLRDlsA~e 394 (1243)
T KOG0971|consen 339 ERVDELETDLEILKAEMEEKGSDG-QAA-----------------------SSYQFKQLEQQNARLKDALVRLRDLSASE 394 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-ccc-----------------------chHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 455566666777777777665441 111 14567777777777777766665432221
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH-------HHh
Q 005005 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI-------SVL 349 (720)
Q Consensus 277 ~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------~~~ 349 (720)
.--..++-||-.-..+.+.+|++.- ..|..++++++..++....|+|-|. ..-
T Consensus 395 ---k~d~qK~~kelE~k~sE~~eL~r~k-----------------E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 395 ---KQDHQKLQKELEKKNSELEELRRQK-----------------ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 1123344455444455555554321 1578888888888888888888773 234
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh---------------hchhhHHH------HH
Q 005005 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ---------------RSDEEIHS------YV 408 (720)
Q Consensus 350 ~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~------~~ 408 (720)
+.|=.|.+||.-||+-.+.- |.+.+.+|.|++--+.+|--|+ +-++++.+ -|
T Consensus 455 dknlnlEekVklLeetv~dl-------Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI 527 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDL-------EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTI 527 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57888999999998876543 3444455555544443332222 11222222 12
Q ss_pred HHHHHHHHHHHHHHHhhHHh---hhhhccCCCCCCCCHHH
Q 005005 409 QLYQESVKEFQDTLHSLKEE---SKKRAVHEPVDDMPWEF 445 (720)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~ 445 (720)
--|++.|.-.|+-|..++.. ++..+.++|--+ |..+
T Consensus 528 ~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~-~et~ 566 (1243)
T KOG0971|consen 528 KKFRELVAHLQDQLQELTDQQESSEEESQQPPSVD-PETF 566 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc-hhhh
Confidence 33556666666666666643 233445555333 4443
No 95
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=2.2 Score=53.18 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=44.8
Q ss_pred ccccccccCCCccccccchhHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 005005 115 KESLVLNCDGGEELSTSQLDNLIS------MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINA 177 (720)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~ 177 (720)
|++.+.+.++.+-| -=|||+|| -|.--..-+..||.-|.+-...+.-+++||.+|.+-.|+
T Consensus 240 MKPk~~~e~d~GmL--EYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~ 306 (1293)
T KOG0996|consen 240 MKPKAQTENDEGML--EYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNE 306 (1293)
T ss_pred cCCCCCCCCcchHH--HHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555554443333 24788887 477777778899999999999999999999999887665
No 96
>PRK01156 chromosome segregation protein; Provisional
Probab=96.10 E-value=2.7 Score=50.51 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 005005 388 QKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
++++.++.++.....++..|..+|...+.++...++.++
T Consensus 594 ~~l~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le 632 (895)
T PRK01156 594 KQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLN 632 (895)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777666555555554444443
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.08 E-value=0.9 Score=53.01 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 005005 266 IKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQE 309 (720)
Q Consensus 266 ~~~~k~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~ 309 (720)
+..+...+..+. ....++..+-++.+.++..+.+++.++..+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444555555 34566777888888888888888888887643
No 98
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.02 E-value=0.029 Score=58.19 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=31.9
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
.+|+||.+- ...||...++-.|.++|.+.|+++.|++
T Consensus 2 ~~il~ii~~----~~~GG~e~~~~~l~~~l~~~~~~~~v~~ 38 (374)
T TIGR03088 2 PLIVHVVYR----FDVGGLENGLVNLINHLPADRYRHAVVA 38 (374)
T ss_pred ceEEEEeCC----CCCCcHHHHHHHHHhhccccccceEEEE
Confidence 579998654 3469999999999999999999988886
No 99
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.84 E-value=2.2 Score=49.26 Aligned_cols=156 Identities=18% Similarity=0.266 Sum_probs=94.9
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
.+...++.+++.|..|+..|+.+++.----.+-.+++..++++...+++.+++++.++...... .+.++.++..+-+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e 390 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILK 390 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 4577788889999999999999888744434446677788888888888887777665554443 4444444444444
Q ss_pred HHHHHHHHHHHHhhhhhhHHH----HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005005 327 KVENLQGLLAKATKQADQAIS----VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~----~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (720)
+++.+..-.....+.....-. .-.+=+.++.++..++..++..++..++..-+. +-...+.++..|..+|....=
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~-~~~~~~~~i~~l~~~L~~g~V 469 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE-MFFEVSDEIEALAEELEEKPI 469 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-HHHHHHHHHHHHHHHhccCCC
Confidence 444443333322222211100 011224456667777777777888887665443 334667888888888877443
Q ss_pred hHHH
Q 005005 403 EIHS 406 (720)
Q Consensus 403 ~~~~ 406 (720)
-|.+
T Consensus 470 Nm~a 473 (569)
T PRK04778 470 NMEA 473 (569)
T ss_pred CHHH
Confidence 3433
No 100
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=95.80 E-value=0.023 Score=62.82 Aligned_cols=121 Identities=19% Similarity=0.351 Sum_probs=76.7
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v 591 (720)
++|+||+--++|- +||...++..|++.|-++||-|.|++-.|+.-. + .+ ..-
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~--g---ir---------------------ylt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRV--G---IR---------------------YLT 52 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCcc--c---ee---------------------eec
Confidence 5799999999995 799999999999999999999999999997431 0 00 112
Q ss_pred CCceEEecCCCCCCCCCCC---CCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCC
Q 005005 592 EGLPVYFIEPHHPDKFFWR---GQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (720)
Q Consensus 592 dGVpVYFID~~~Pe~fF~R---~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~ 668 (720)
+|+.||+++-.. .|+. +.+|+. |-+|- . .++ ..+..|||.|--.++++--.++. .+ ..
T Consensus 53 ~glkVyylp~~v---~~n~tT~ptv~~~------~Pllr-~--i~l---rE~I~ivhghs~fS~lahe~l~h---ar-tM 113 (426)
T KOG1111|consen 53 NGLKVYYLPAVV---GYNQTTFPTVFSD------FPLLR-P--ILL---RERIEIVHGHSPFSYLAHEALMH---AR-TM 113 (426)
T ss_pred CCceEEEEeeee---eecccchhhhhcc------Ccccc-h--hhh---hhceEEEecCChHHHHHHHHHHH---HH-hc
Confidence 457777765321 1110 123332 00110 0 111 34788999998666665222221 11 23
Q ss_pred CCCEEEEecCC
Q 005005 669 SARVCFTCHNF 679 (720)
Q Consensus 669 ~iptVFTIHNL 679 (720)
+.+||||=|.+
T Consensus 114 GlktVfTdHSl 124 (426)
T KOG1111|consen 114 GLKTVFTDHSL 124 (426)
T ss_pred CceEEEecccc
Confidence 58999999986
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.72 E-value=0.14 Score=60.68 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCCCCCc-eEEEEecccCCccccCCHHHHHHHHHHHHHHCCC
Q 005005 506 SSISSGL-HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH 546 (720)
Q Consensus 506 ~~k~~~M-KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGh 546 (720)
.+.+.+. ||+||..- ...||-..++..|..+|.+.|.
T Consensus 275 ~~~~~~~~rIl~vi~s----l~~GGAEr~~~~La~~l~~~~~ 312 (694)
T PRK15179 275 AGPESFVGPVLMINGS----LGAGGAERQFVNTAVALQSAIQ 312 (694)
T ss_pred CCCCCCcceEEEEeCC----CCCCcHHHHHHHHHHHHHhccc
Confidence 3445556 99999765 4569999999999999999854
No 102
>PLN02275 transferase, transferring glycosyl groups
Probab=95.71 E-value=0.094 Score=55.84 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHCCC-eEEEEec
Q 005005 528 GGLGDVVAGLGKALQKKGH-LVEIVLP 553 (720)
Q Consensus 528 GGLGDVVgsLPKALa~lGh-EV~VILP 553 (720)
+|-+--+..+..+|+++|+ +|+|+..
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~ 41 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAY 41 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEe
Confidence 5677788889999999886 7999974
No 103
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.63 E-value=4.4 Score=47.94 Aligned_cols=242 Identities=24% Similarity=0.336 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhh-----hHh-hhHHHHHHHHHHhhhcccCc
Q 005005 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI-----HVE-LLEDQLQKLQHELTHRGVSE 220 (720)
Q Consensus 147 i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~ 220 (720)
+..++|-=.+--+.+.+...||+.....|..||..|++...++.......- -+| =+.++++.|+.|+-
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE------ 97 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE------ 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH------
Confidence 444555555667889999999999999999999999997666654432211 112 13333344444331
Q ss_pred ccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHH
Q 005005 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKE 299 (720)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~-~~~~~~~~~~~~e~~~l~~~~~~ 299 (720)
.|..++...-++| ..|+.. .+-++|+..||+.-..++....|
T Consensus 98 --------------------------~L~~qlqaqv~~n-----------e~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 98 --------------------------SLEEQLQAQVENN-----------EQLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred --------------------------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222 122222 35566666666666666666666
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh---hhHHHHhh-hhHHHHHHHHHHHHHHhHhh---hh
Q 005005 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA---DQAISVLQ-QNQELRKKVDKLEESLDEAN---IY 372 (720)
Q Consensus 300 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~-~~~~l~~~~d~l~~~l~~~~---~~ 372 (720)
..+-|...+.|-..+|-----=+.|-+.+..||.-+-+.||.- ..|.-.-+ -+.+|.+|...|++.|..-. -+
T Consensus 141 ~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~ 220 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLEL 220 (617)
T ss_pred HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665555555544444332222345566666666555555542 22221111 22345555544444332211 11
Q ss_pred hh------------chHHHHHHH----------HHHHHHH---HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 373 KL------------SSEKMQQYN----------ELMQQKM---KLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 373 ~~------------~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
|- ...-||||. +-|+..+ ..+=+|||.-...+...+..-....++-+..|..+..
T Consensus 221 K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~q 300 (617)
T PF15070_consen 221 KSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQ 300 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 011344443 2222221 2334566655555555555556666666666666655
Q ss_pred hhhh
Q 005005 428 ESKK 431 (720)
Q Consensus 428 ~~~~ 431 (720)
++.-
T Consensus 301 qNqq 304 (617)
T PF15070_consen 301 QNQQ 304 (617)
T ss_pred hhHH
Confidence 5543
No 104
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=95.63 E-value=0.014 Score=61.57 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~ 557 (720)
..||||++++-+ -||-.-.+.+|.++|.++|++|.++.|.+..
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~ 45 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGE 45 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHh
Confidence 357999999753 3499999999999999999999999998753
No 105
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.56 E-value=3.4 Score=42.62 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 142 ~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
.++..+-.+...-..+-..++++-.|-..|+++|..||..|..++.|+..+.+.=..++---++.+.-++.|-+
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555567777888888899999999999999999988887766433333333333444444433
No 106
>PRK01156 chromosome segregation protein; Provisional
Probab=95.52 E-value=7.3 Score=46.96 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhh
Q 005005 404 IHSYVQLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (720)
+..|+.-|...+++...-+..|.++-
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888888765
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.51 E-value=3.4 Score=48.35 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=18.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 005005 343 DQAISVLQQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 343 ~~~~~~~~~~~~l~~~~d~l~~~l~~~~ 370 (720)
.++...+.+-..++.++|.++..|..+.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~ 418 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444456667777777788877777654
No 108
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=1.1 Score=55.54 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=57.9
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHH------HHHHHHH-HHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhh
Q 005005 130 TSQLDNLISMIRNAEKNILLLNEA------RVQALED-LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (720)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~l~~~------r~~a~~~-~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~ 202 (720)
..+|++...+.++...-.+-+++. |..-|+- +++...+-..+-..|+-|+.++++..+++...+-.+-++..+
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~ 863 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKEL 863 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHH
Confidence 345666666666554444334333 3333443 666666767777788888888888888876666677777888
Q ss_pred HHHHHHHHHHhhh
Q 005005 203 EDQLQKLQHELTH 215 (720)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (720)
++++++++.|+-.
T Consensus 864 ~~~ie~l~kE~e~ 876 (1293)
T KOG0996|consen 864 EEQIEELKKEVEE 876 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888755
No 109
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.43 E-value=5.7 Score=45.73 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=35.1
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 005005 132 QLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINAL 178 (720)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l 178 (720)
||.-+-.=+..+.+-+-..-..|.+||.+|+..-.-.+.|..+|+..
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555667777777778899999999988887777777776643
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.38 E-value=1.3 Score=52.80 Aligned_cols=93 Identities=30% Similarity=0.364 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhh----hh
Q 005005 201 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN----SV 276 (720)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~----~~ 276 (720)
-||.++++||.||.+....|.. +...++ .+..+ =..+..||..+|.||..|.+-+..|....- ..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E-LRsqis--------~l~~~--Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l 490 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE-LRSQIS--------SLTNN--ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL 490 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHh--------hcccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999999887666522 221111 01111 127788999999999999998887765543 34
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 005005 277 KDADERVVMLEMERSSLESSLKELESKL 304 (720)
Q Consensus 277 ~~~~~~~~~~~~e~~~l~~~~~~~e~~~ 304 (720)
...+.++....+-|..+|+.|.+-.+.-
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777788888998888876543
No 111
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.33 E-value=0.54 Score=45.58 Aligned_cols=97 Identities=31% Similarity=0.504 Sum_probs=73.1
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhh---hhhHHHHhh-hhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHH
Q 005005 313 KLSTLKVECKDLYEKVENLQGLLAKATKQ---ADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (720)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~-~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (720)
|+..|+.|--+|.++++.++.-+..+..+ .++=|..|+ .|+.|...||++++.|.++.-.---+++..+-++-|+.
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 45667778778888888888776655433 344444444 57888888899999988888888888888888888999
Q ss_pred HHHHHHHHHhhchhhHHHHHH
Q 005005 389 KMKLLEERLQRSDEEIHSYVQ 409 (720)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~ 409 (720)
+|.+||+.|..++.-...-..
T Consensus 81 riq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888877655433
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.25 E-value=6.1 Score=51.61 Aligned_cols=176 Identities=21% Similarity=0.257 Sum_probs=106.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh---
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD--- 323 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--- 323 (720)
.++.++.+++.|+-.+..-+...-..+..+++ -+++++..+.++...-|+.+..-.+++.+|.-|+-+...
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~ 1074 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQN------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCND 1074 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776665544443333333322 233444444444444444444444444444444443333
Q ss_pred ----------------------HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh--hhhchHHH
Q 005005 324 ----------------------LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--YKLSSEKM 379 (720)
Q Consensus 324 ----------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~--~~~~~~~~ 379 (720)
|-++=..|...+..+.+ +......||.-|+++|+.+-.-..+-|+ .+.....|
T Consensus 1075 e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~---~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL 1151 (1822)
T KOG4674|consen 1075 ELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKK---RIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDL 1151 (1822)
T ss_pred HHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHH
Confidence 44444444444444333 3456788999999999998776653233 34445567
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
+...-.|+.....++-++..+-.|-..+.+-|.-+=+..++..+.|..+.+.
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888777777766666666666666666655
No 113
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.03 E-value=2 Score=51.04 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=65.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhh------h------hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHH
Q 005005 318 KVECKDLYEKVENLQGLLAKATKQA------D------QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNEL 385 (720)
Q Consensus 318 ~~~~~~~~~~~~~l~~~l~~~~~~~------~------~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~ 385 (720)
+....+|-++...+|+-+|.|.+-- . +--+..+|--|||.++.+-|.++.. + -+-++-.++.
T Consensus 543 r~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar----r--Ed~~R~Ei~~ 616 (961)
T KOG4673|consen 543 RALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR----R--EDMFRGEIED 616 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHH
Confidence 3333456667777777776665511 1 1123445566666666666655443 2 3446667788
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 386 MQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
||+++...|-|-+.+-.+.-+--+-.-.-|+..|.||++-..
T Consensus 617 LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~t 658 (961)
T KOG4673|consen 617 LQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAAT 658 (961)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhh
Confidence 888888888887777766666555555668889999887543
No 114
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.02 E-value=9.2 Score=44.39 Aligned_cols=297 Identities=19% Similarity=0.281 Sum_probs=137.0
Q ss_pred ccccccCCCccccccchhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhh
Q 005005 117 SLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARV-QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQE 195 (720)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~-~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~ 195 (720)
...-|..+-..|++.+|.++-.+|-.||.++--.+=.+. +++.+++..+.+-| .+|..+...|.+- +..-.+-
T Consensus 65 ~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e---~~~~~i~~~l~~l---~~~e~~n 138 (569)
T PRK04778 65 KFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIE---EDIEQILEELQEL---LESEEKN 138 (569)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHH
Confidence 344455566677888889999999999988766554332 23444443333332 2233222222222 1122233
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcc-----cccccCCcccchhhHhhhhhhhhhhcchhHHHHHH
Q 005005 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN-----EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLK 270 (720)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k 270 (720)
+..|+-+.+....+|+.|...+.+=|...+-...+=..+- -..+..+|-.-.-.+.+..|+++-..|+..|+.+-
T Consensus 139 r~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP 218 (569)
T PRK04778 139 REEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIP 218 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666667777666655443333221100000000 00011122122334455555665555555555543
Q ss_pred HHhhhhhhhh-hHHHHH-------Hhh-----hhhHHhhHHHHHhhhhcchhhhhccc--cchhhhhhHHHHHHHHHHHH
Q 005005 271 AELNSVKDAD-ERVVML-------EME-----RSSLESSLKELESKLSISQEDVAKLS--TLKVECKDLYEKVENLQGLL 335 (720)
Q Consensus 271 ~~~~~~~~~~-~~~~~~-------~~e-----~~~l~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l 335 (720)
.-+..++.+= ..+..| ..+ .-.+++.+..|..++..+-..+..|. ..+.....+-++++.|-+.|
T Consensus 219 ~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~l 298 (569)
T PRK04778 219 ELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDIL 298 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333211 222222 111 11256666666666666555444332 22233334455555555555
Q ss_pred HH---HhhhhhhHHHHh--------hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 336 AK---ATKQADQAISVL--------QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 336 ~~---~~~~~~~~~~~~--------~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
.+ |.+.+++....+ .+|++|...++.|..| |.++-..+.. ...++++++.+++++......+
T Consensus 299 ekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s------Y~l~~~e~~~-~~~lekeL~~Le~~~~~~~~~i 371 (569)
T PRK04778 299 EREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS------YTLNESELES-VRQLEKQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc------cccCchhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 43 223333322221 2333444444444333 2333322222 3456667777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 005005 405 HSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
......|....+++.+....+.
T Consensus 372 ~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 372 AEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 6666666665555555444443
No 115
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.98 E-value=10 Score=49.59 Aligned_cols=261 Identities=21% Similarity=0.285 Sum_probs=129.0
Q ss_pred cccccchhHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhh
Q 005005 127 ELSTSQLDNLISMIRNA----EKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (720)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~ 202 (720)
..|..+.++++.|+.-. |-|+ .|+.-+-+=++.++.+..+.+.|+-++.-|+.+|.++++.+-. .
T Consensus 1208 a~s~~e~~~i~~~v~~vNll~EsN~-~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~----------~ 1276 (1822)
T KOG4674|consen 1208 AVSDDEHKEILEKVEEVNLLRESNK-VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQE----------K 1276 (1822)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH----------H
Confidence 35677888888887644 4444 4677777778888888888888888888888888888776643 3
Q ss_pred HHHHHHHHHHhhhcccCcccchhhhhc-CCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh-h
Q 005005 203 EDQLQKLQHELTHRGVSEHSELDVFAN-QNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA-D 280 (720)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~-~ 280 (720)
...+.+|++|...---- .-++-.. .+... ..+..|..++..|++|=....+-|+.++.++..++++ -
T Consensus 1277 ~ael~~l~~e~~~wK~R---~q~L~~k~k~~d~--------~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k 1345 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQR---NQDLLEKYKDSDK--------NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIK 1345 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555443221000 0000000 01111 0112333344444444444444455555555555432 3
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH-HHHhhhhHHHH---
Q 005005 281 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA-ISVLQQNQELR--- 356 (720)
Q Consensus 281 ~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~l~--- 356 (720)
+.+-.+..+++.+...+.+++..-..--+ +|-++-++-..+.+. ++-..+- -.+.+.++.+-
T Consensus 1346 ~qld~l~~e~~~lt~~~~ql~~~~~rL~~-------------~~~e~~~q~~el~~~-~~~~~~~~e~t~rk~e~~~~k~ 1411 (1822)
T KOG4674|consen 1346 KQLDELNNEKANLTKELEQLEDLKTRLAA-------------ALSEKNAQELELSDK-KKAHELMQEDTSRKLEKLKEKL 1411 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777766654322111 122222221111111 1111110 01222222222
Q ss_pred ---HHHHHHHHHHhHh-hh---hhhchHHHHHHHHHHHHHHHHHHH-HHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 005005 357 ---KKVDKLEESLDEA-NI---YKLSSEKMQQYNELMQQKMKLLEE-RLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 357 ---~~~d~l~~~l~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
..+.+|.+.|+++ .+ ..-.+++++.. +..-.|..+. +.++-+++|+.-.+.|+..+..-++....+-
T Consensus 1412 ~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e---~~~~~k~~~~~~~e~~~~~i~~~~e~~~~~~~~~~~~~~~le 1486 (1822)
T KOG4674|consen 1412 ELSEELESLKEELEELQQLQATLQSETEAITKE---LFEAKKEEEKSTTERLLEEIKKLLETVRKKTVDADSKSENLE 1486 (1822)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2234445555443 12 12233344332 2223333333 7777778888888888887777666554443
No 116
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.90 E-value=4.4 Score=47.00 Aligned_cols=294 Identities=20% Similarity=0.302 Sum_probs=157.1
Q ss_pred ccccccCCCccccccchhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhh
Q 005005 117 SLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARV-QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQE 195 (720)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~-~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~ 195 (720)
...-|...-..|.+.++.++-.++-.||..+--.+=.+. +++.+++..+.+- ..+|+.+...|.+- +....+-
T Consensus 61 ~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~---e~~i~~i~~~l~~L---~~~e~~n 134 (560)
T PF06160_consen 61 KFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEI---EEDIKEILDELDEL---LESEEKN 134 (560)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHH
Confidence 344455666778889999999999999998766554433 3444444444433 33444444444333 2233444
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccccc-------------CCcccchhhHhhhhhhhhhhcc
Q 005005 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL-------------NNSEIHSFSKELDSLKTENLSL 262 (720)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~en~~~ 262 (720)
+..++-+.+....+|+.|...+.+=|...+ .+++.+. .+|-.-.-.+.+..|+++-..|
T Consensus 135 r~~i~~l~~~y~~lrk~ll~~~~~~G~a~~--------~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l 206 (560)
T PF06160_consen 135 REEIEELKEKYRELRKELLAHSFSYGPAIE--------ELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDEL 206 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhHH--------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 556667788888888888776555433332 2111111 1111112234444555555555
Q ss_pred hhHHHHHHHHhhhhhh-hhhHHHHH-------Hhhh-----hhHHhhHHHHHhhhhcchhhhhccccchhh--hhhHHHH
Q 005005 263 KNDIKVLKAELNSVKD-ADERVVML-------EMER-----SSLESSLKELESKLSISQEDVAKLSTLKVE--CKDLYEK 327 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~-~~~~~~~~-------~~e~-----~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~ 327 (720)
+..|+.+-.-+..+.. ....+..| .++. -.+++.+.+++.++..+-..+..|..=.++ -..+-++
T Consensus 207 ~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~ 286 (560)
T PF06160_consen 207 EEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEER 286 (560)
T ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5544444333333221 11111111 1111 115566666666666666655544332222 2234455
Q ss_pred HHHHHHHHHH---HhhhhhhHHH--------HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 005005 328 VENLQGLLAK---ATKQADQAIS--------VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER 396 (720)
Q Consensus 328 ~~~l~~~l~~---~~~~~~~~~~--------~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (720)
++.|-+.|.+ |.+.+++-.. +-.+|+.|...++.+..| |.++-..+..+ ..+..+++.++.+
T Consensus 287 Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s------Y~L~~~e~~~~-~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 287 IDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS------YTLNHNELEIV-RELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCchHHHHH-HHHHHHHHHHHHH
Confidence 5555555543 2233332222 223455555555555443 66666666555 4566788888999
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 397 LQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
+......|...-..|.....+++.....|..-.+.
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~ 394 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEE 394 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877776666666665554433
No 117
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.80 E-value=0.0079 Score=70.42 Aligned_cols=202 Identities=27% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhh-hhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccc
Q 005005 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQE-KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (720)
.+.....|++.|+.+...|..+++.++....-+.+. ...-.-+..+++.||.|+-...... .
T Consensus 201 ~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~---~-------------- 263 (713)
T PF05622_consen 201 QISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQR---D-------------- 263 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------
Confidence 344566789999999999999988877333222221 1112234677778888776542210 0
Q ss_pred ccCCcccchhhHhhhhhhhhhhcch---hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 005005 239 VLNNSEIHSFSKELDSLKTENLSLK---NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (720)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~en~~~k---~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~ 315 (720)
.....+-.+-.++..|+.+|..|. .....||.+++...+.-+++.++|.+-......|.|++. =-.++.
T Consensus 264 -d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~-------lk~qvk 335 (713)
T PF05622_consen 264 -DLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLED-------LKRQVK 335 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 001122345678888999988777 567789999999999999999999988888877777643 223456
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 005005 316 TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 395 (720)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (720)
.|+.+++.+-+...-|..-|.++.. .-.+...++++|..|+..+.+.. ...+++..-+..|+++++.++.
T Consensus 336 ~Lee~N~~l~e~~~~LEeel~~~~~-------~~~qle~~k~qi~eLe~~l~~~~---~~~~~l~~e~~~L~ek~~~l~~ 405 (713)
T PF05622_consen 336 ELEEDNAVLLETKAMLEEELKKARA-------LKSQLEEYKKQIQELEQKLSEES---RRADKLEFENKQLEEKLEALEE 405 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777766543 33445566777777776665532 2233444455566666666654
Q ss_pred H
Q 005005 396 R 396 (720)
Q Consensus 396 ~ 396 (720)
.
T Consensus 406 e 406 (713)
T PF05622_consen 406 E 406 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.74 E-value=16 Score=45.76 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhccc
Q 005005 139 MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGV 218 (720)
Q Consensus 139 ~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (720)
-+++...|....-+.+-+|-+.++-...++.-++.+|...+-++... .+++.+.++++.|..+++=.-|
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-----------~~~e~~~~~l~~Lk~k~~W~~V 276 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-----------EQLEDLKENLEQLKAKMAWAWV 276 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666666555555555555555555554444322 2377888888888888887644
Q ss_pred C
Q 005005 219 S 219 (720)
Q Consensus 219 ~ 219 (720)
.
T Consensus 277 ~ 277 (1074)
T KOG0250|consen 277 N 277 (1074)
T ss_pred H
Confidence 4
No 119
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.73 E-value=12 Score=45.68 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=64.7
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 341 (720)
.+..+..++..+..+..-.+++....+|...+...+...-..+...++...+++.+...+..+-++.+.|...+..+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 351 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666665555555555666666677777777777777777777777666555
Q ss_pred hhhHHHHhhhhHH-HHHHHHHHHHHHh
Q 005005 342 ADQAISVLQQNQE-LRKKVDKLEESLD 367 (720)
Q Consensus 342 ~~~~~~~~~~~~~-l~~~~d~l~~~l~ 367 (720)
..+....++.... ++.+.+.++..+.
T Consensus 352 ~~~~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 352 KNELAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555455554444 5555566655554
No 120
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.67 E-value=3.4 Score=50.00 Aligned_cols=161 Identities=25% Similarity=0.382 Sum_probs=96.2
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 320 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~----~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 320 (720)
|.-|-..|.....++-.|-.|+++|..+|..-. .-...+-.++.|.+.+..-|.+|-..+-+....|.
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~-------- 395 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN-------- 395 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334455555556666667777777777765532 33456666777777777777777666655554443
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 321 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
.|..|+|+|+..|..=.++.+.+-.-|..+. =.-+.|.+-+.|++|...+ +.++.++... | ..+
T Consensus 396 --~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~-d~~~~~~~~~~lEea~~ek----------er~~e~l~e~--r-~~~ 459 (775)
T PF10174_consen 396 --VLQKKIENLEEQLREKDRQLDEEKERLSSQA-DSSNEDEALETLEEALREK----------ERLQERLEEQ--R-ERA 459 (775)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHH----------HHHHHHHHHH--H-HHH
Confidence 4677888888888654555555544444322 2234455666677766544 2334443322 2 344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 005005 401 DEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (720)
+.+-...+..|+..+++....++.|-.+-
T Consensus 460 e~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 460 EKERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55666667777877777777777776543
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.67 E-value=9.8 Score=48.03 Aligned_cols=125 Identities=23% Similarity=0.297 Sum_probs=72.5
Q ss_pred hHHHHHHhhhhh----HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-HH
Q 005005 281 ERVVMLEMERSS----LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ-EL 355 (720)
Q Consensus 281 ~~~~~~~~e~~~----l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~l 355 (720)
.++.+..+|.+. +.+..+++|.++...|+.-.+|+.....-.+.-++.-..+.-+...-+-++.-+..|+..+ .+
T Consensus 563 ~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~ 642 (1317)
T KOG0612|consen 563 GKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAG 642 (1317)
T ss_pred hhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 344444444333 3334457888888888888888877776555566666666555555555666666665443 23
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 356 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 356 ~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
....-|+++ |++++....+.-..-..-..+.-++|.++.+++.-..|-+.
T Consensus 643 ~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~ 692 (1317)
T KOG0612|consen 643 KKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHR 692 (1317)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666 77777666554322123344555666666666665555444
No 122
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.67 E-value=17 Score=45.86 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=30.5
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 005005 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (720)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l 182 (720)
.++..+......+|+++-..|...-.+-..+...-.+.+..+.++.-|....
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3556666677777777777766666555555555555554444444444433
No 123
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.55 E-value=0.42 Score=56.40 Aligned_cols=159 Identities=23% Similarity=0.324 Sum_probs=62.3
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh-----------hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----h
Q 005005 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD-----------ADERVVMLEMERSSLESSLKELESKLSIS----Q 308 (720)
Q Consensus 244 ~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~-----------~~~~~~~~~~e~~~l~~~~~~~e~~~~~~----~ 308 (720)
.+..+..++...+.-+..+-..++.++.....-.. -...+..|++|...|+..+..||.++... .
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~ 541 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGE 541 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34556667777777677777777887777654322 23467778888888888888888888651 1
Q ss_pred hhhhccccc--hhhhhhHHH--HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh-hhh-hhchHHHHHH
Q 005005 309 EDVAKLSTL--KVECKDLYE--KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA-NIY-KLSSEKMQQY 382 (720)
Q Consensus 309 ~~~~~~~~~--~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~-~~~-~~~~~~~~~~ 382 (720)
-+.++..-| +.-=..-|+ |-..|.. .=..|++|+.++-.|++--... .+. .-+..-.++.
T Consensus 542 ~~~~~trVL~lr~NP~~~~~~~k~~~l~~--------------L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e 607 (722)
T PF05557_consen 542 FNPSKTRVLHLRDNPTSKAEQIKKSTLEA--------------LQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKE 607 (722)
T ss_dssp -BTTTEEEEEESS-HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTTTT----------------HH
T ss_pred cCCCCceeeeeCCCcHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHH
Confidence 122222212 111111122 2222222 2235778888887765432211 111 1112222223
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 005005 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLH 423 (720)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 423 (720)
...|+.++..+|-|.+ -.-++|...+.+|.+...
T Consensus 608 ~~~l~~~~~~~ekr~~-------RLkevf~~ks~eFr~av~ 641 (722)
T PF05557_consen 608 IAELKAELASAEKRNQ-------RLKEVFKAKSQEFREAVY 641 (722)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3455666666665554 466788889999987443
No 124
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.53 E-value=12 Score=48.51 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=37.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 371 IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
...++.+.|+.+-+-..++++..+..+....+++.. -....+.|+..+..+..+..+
T Consensus 432 ~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~----lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 432 LPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSV----AQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 456777777777777777777777776665555444 355556677766666666555
No 125
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.36 E-value=8.3 Score=45.72 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCceEEEEecccCCccccCCH--HHHHHHHHHHHHHCCCeEEEEe
Q 005005 510 SGLHVIHIAAEMAPVAKVGGL--GDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGL--GDVVgsLPKALa~lGhEV~VIL 552 (720)
++-||+.|++- .||- -.++..|+.+|+..|..|-+|=
T Consensus 544 ~~~kvi~vts~------~~G~GKTt~a~nLA~~lA~~g~rvLlID 582 (754)
T TIGR01005 544 AEPEVVETQRP------RPVLGKSDIEANAAALIASGGKRALLID 582 (754)
T ss_pred CCceEEEeecC------CCCCChhHHHHHHHHHHHhCCCeEEEEe
Confidence 34578877764 3444 4688999999999999998883
No 126
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.34 E-value=0.012 Score=69.02 Aligned_cols=177 Identities=21% Similarity=0.412 Sum_probs=0.0
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcch---hhh--------h
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQ---EDV--------A 312 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~---~~~--------~ 312 (720)
.|.+..++..|.+|+..|......++..++... ...+....+.++.+.|.+.++.|...+.... .|. .
T Consensus 195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ 274 (713)
T PF05622_consen 195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEK 274 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777766544 2222333444555555555555555443211 110 1
Q ss_pred ccccchhhhhhHH---HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHH
Q 005005 313 KLSTLKVECKDLY---EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQK 389 (720)
Q Consensus 313 ~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (720)
.+..|+.++..|. +.+..|++-||-....|+++ .-|...|.+.+.-|++..-||-.-..|+.-|..+.++
T Consensus 275 ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~-------~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~ 347 (713)
T PF05622_consen 275 EIDELRQENEELQAEAREARALRDELDELREKADRA-------DKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLET 347 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222 22223333333333333333 2233444445556677777777777788888888888
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 005005 390 MKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (720)
...||+-++++. ...+++..|...|.+++.-++......
T Consensus 348 ~~~LEeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~ 386 (713)
T PF05622_consen 348 KAMLEEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRA 386 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998875 478999999999999988777655433
No 127
>PF15294 Leu_zip: Leucine zipper
Probab=94.33 E-value=5.9 Score=42.85 Aligned_cols=87 Identities=33% Similarity=0.357 Sum_probs=58.4
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 322 (720)
+..--|.+|.+.|++||..||+-+..+-.+-.. .=+|++-|++.|++|.. ...-+.+-..+..-..+-.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~----------~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATS----------ALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLS 193 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHhhhccccccccccchh
Confidence 444568899999999999999988877654433 34578889999999988 3333333333333334444
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 005005 323 DLYEKVENLQGLLAKATK 340 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~ 340 (720)
+|-.+++.+..-+.++.+
T Consensus 194 dLE~k~a~lK~e~ek~~~ 211 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQ 211 (278)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567777777766666543
No 128
>PRK09039 hypothetical protein; Validated
Probab=94.32 E-value=0.98 Score=49.36 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=23.8
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH
Q 005005 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK 298 (720)
Q Consensus 248 ~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~ 298 (720)
|++-|..=+..+..|...|..++.++. .++.+|+-|++.+.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----------~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----------AAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 454555545556666666666666555 55666665555544
No 129
>PRK11637 AmiB activator; Provisional
Probab=94.28 E-value=3.9 Score=45.46 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhcc
Q 005005 203 EDQLQKLQHELTHRG 217 (720)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (720)
.+++.++-..+...|
T Consensus 123 ~~~l~~rlra~Y~~g 137 (428)
T PRK11637 123 ERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444444433
No 130
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=8.4 Score=47.73 Aligned_cols=267 Identities=24% Similarity=0.308 Sum_probs=123.6
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhc----------h-hhhhhHhhhhhh
Q 005005 129 STSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAE----------T-DARIRVAAQEKI 197 (720)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e----------~-~~~~~~~~~~~~ 197 (720)
+..+|.+|-.-+.-++++|--.+|-=-+-..+++++-+...+...++..|..-+.- | .+..+.--.-+.
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777776655555555554444333333333332221111 1 111111122233
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
+..-++++.+-+.+||.+.-.++-...+ -+.+-+-+..|..++.+|..+.+|-+- |+..|+.|..--
T Consensus 756 ~l~~~~~~~~~~e~el~sel~sqLt~ee---------~e~l~kLn~eI~~l~~kl~~~~~er~~----~~~rk~~le~~l 822 (1200)
T KOG0964|consen 756 SLHKLESQSNYFESELGSELFSQLTPEE---------LERLSKLNKEINKLSVKLRALREERID----IETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHhHHHHHhHHHHhhcCHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4445666666666766654333222111 111223355677777777777777654 333333332211
Q ss_pred --hhhhHHHHHHhh---------hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH
Q 005005 278 --DADERVVMLEME---------RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI 346 (720)
Q Consensus 278 --~~~~~~~~~~~e---------~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 346 (720)
+-..|+--|+-| |+.|+..=.+|++-...-++-+++|++|+..-...-...-+++..|++|.+....-.
T Consensus 823 ~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~ 902 (1200)
T KOG0964|consen 823 NTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKK 902 (1200)
T ss_pred HHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222223322 223444444444444444555666666665544444445555666666655554443
Q ss_pred HHhhhhHHHHHHHHHHHHHHhH-hh-----h---hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 005005 347 SVLQQNQELRKKVDKLEESLDE-AN-----I---YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (720)
Q Consensus 347 ~~~~~~~~l~~~~d~l~~~l~~-~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (720)
.-++++-.+.+.+-+ +..|-. -- | --++.+.+-.|. .-+.+.|..+|++|++++.-|=-+-.
T Consensus 903 ~~~~~dKe~Ek~~~r-k~~Ll~KreE~~ekIr~lG~Lp~daf~ky~---~~~~~el~kkL~~~neelk~ys~VNK 973 (1200)
T KOG0964|consen 903 DNINFDKELEKLVRR-KHMLLKKREECCEKIRELGVLPEDAFEKYQ---DKKSKELMKKLHRCNEELKGYSNVNK 973 (1200)
T ss_pred hhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCchHHHHHhc---cCCHHHHHHHHHHHHHHHhhcchhhH
Confidence 332222222222211 111110 00 0 011222222222 23567788888888888877544433
No 131
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.17 E-value=0.013 Score=68.59 Aligned_cols=160 Identities=24% Similarity=0.358 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc------chhhh-hccccchhhhhhHHHHHHHHHHHH
Q 005005 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI------SQEDV-AKLSTLKVECKDLYEKVENLQGLL 335 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l 335 (720)
|+....|+.+|.......+.+..++-|+.-|+..++..++-+.. +++|| ..|..++.++-.+-++.-+++.-+
T Consensus 287 eEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~ 366 (722)
T PF05557_consen 287 EEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSEL 366 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33334444444444444444455555555555555544442221 33443 468888999888888888887766
Q ss_pred HHHhhhhhhHHHHhh-hhHHHHHHHHHHHHHHhHhhhhhhchHH----HHHHHHHHHHHHHHHHHHHhhchhh-------
Q 005005 336 AKATKQADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEK----MQQYNELMQQKMKLLEERLQRSDEE------- 403 (720)
Q Consensus 336 ~~~~~~~~~~~~~~~-~~~~l~~~~d~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------- 403 (720)
....+.. .-|+ ....+..++.+++.++....--.-+.++ +.+.++.|++.++.++.-.......
T Consensus 367 ~~l~~~~----~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~ 442 (722)
T PF05557_consen 367 RELEEEI----QELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRI 442 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHH
Confidence 5533332 2222 2244566666666665544332222222 2345677788888776654443332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhH
Q 005005 404 --IHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 404 --~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
+...++.|+....+.+..|..+.
T Consensus 443 ~~~~~l~~~~~~~~~ele~~l~~l~ 467 (722)
T PF05557_consen 443 KEIEDLEQLVDEYKAELEAQLEELE 467 (722)
T ss_dssp -------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777776555555444443
No 132
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.93 E-value=14 Score=45.23 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=51.3
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc
Q 005005 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (720)
Q Consensus 166 ~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (720)
.||.+||.-|..++.-|.|+.-+|.-.. -+.+-+|++|-+-++++-..+.. +-..+..+
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE~~~---srlh~le~eLsAk~~eIf~~~~~------------------L~nk~~~l 178 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIENLN---SRLHKLEDELSAKAHDIFMIGED------------------LHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHHHH------------------HhhhhhHH
Confidence 4566666666666655555544443221 12334455555555555443322 22334567
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhh
Q 005005 246 HSFSKELDSLKTENLSLKNDIKVLKAELN 274 (720)
Q Consensus 246 ~~~~~~~~~~~~en~~~k~~~~~~k~~~~ 274 (720)
.++-++|.++-+||..+++.++.+-.++.
T Consensus 179 t~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888776555443
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.90 E-value=5.1 Score=38.97 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh-hhhchHHHHHH---HHHHHHHHHHHHHHHhhch
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI-YKLSSEKMQQY---NELMQQKMKLLEERLQRSD 401 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 401 (720)
..|+.++.-|..+...++.+--..+.+..|.++|.-||+.|+++.- .+...+++++. .+-+-.+|+.||.+.....
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 4455555555555556666655566667889999999999887742 22333444322 2334445555555444433
Q ss_pred h
Q 005005 402 E 402 (720)
Q Consensus 402 ~ 402 (720)
.
T Consensus 129 ~ 129 (143)
T PF12718_consen 129 E 129 (143)
T ss_pred H
Confidence 3
No 134
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=3.2 Score=44.48 Aligned_cols=171 Identities=20% Similarity=0.312 Sum_probs=103.3
Q ss_pred ccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHH
Q 005005 128 LSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQ 207 (720)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 207 (720)
++.+.=+.+-.||.|.++=|-=+...--.+=.+++.+.+..+++|++++-+..+..++.+.|+- ++.++.
T Consensus 21 ~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~----------l~~eI~ 90 (265)
T COG3883 21 LTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK----------LQKEIA 90 (265)
T ss_pred cchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3444445556669999988888888888888888888888888888888888888887777663 333444
Q ss_pred HHHHHhhhcc-cCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHH
Q 005005 208 KLQHELTHRG-VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (720)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~ 286 (720)
.+++-+..|. .-..+.+.++.|......-|.+.... ||+.=++.+-.=|.....|-.-|+..-.+-+..++.-..+
T Consensus 91 ~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~Sk---SfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 91 ELKENIVERQELLKKRARAMQVNGTATSYIDVILNSK---SFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccC---cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333331 11122333444444333333344444 4555555555555555566555555555555556666666
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhh
Q 005005 287 EMERSSLESSLKELESKLSISQEDV 311 (720)
Q Consensus 287 ~~e~~~l~~~~~~~e~~~~~~~~~~ 311 (720)
+++-..|.+-..|+|.++..-+.-.
T Consensus 168 ~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 168 EDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766655433333
No 135
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=93.69 E-value=0.39 Score=50.92 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=28.8
Q ss_pred ceEEEEecccCCccccCCHHHHH--HHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVV--gsLPKALa~lGhEV~VILPkY 555 (720)
|||++++. ||.|++. -.|.++|+++||+|+++++.+
T Consensus 1 mrIl~~~~--------p~~GHv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTI--------GSRGDVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeC--------CCcchHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 89999973 5666664 467788999999999999864
No 136
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.67 E-value=12 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhchhhHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
+.|+++++.+++++.....++..
T Consensus 349 e~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 349 EALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555554
No 137
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.57 E-value=4 Score=44.62 Aligned_cols=136 Identities=21% Similarity=0.319 Sum_probs=80.7
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVE 320 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~----~~~~~~ 320 (720)
+..|-+-+..|.+||..|+.....|+++-+.+-+- |+.++.--+ .+|+.|..-++.| ..-.-|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---------EqqLv~dcv----~QL~~An~qia~LseELa~k~Ee 228 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---------EQQLVLDCV----KQLSEANQQIASLSEELARKTEE 228 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---------HHHHHHHHH----HHhhhcchhHHHHHHHHHHHHHH
Confidence 45677889999999999999999999887755443 333322222 2334444444333 234455
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 321 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
|..-.+.|..|.+.+....++.-+. ...|-+|+..+ .++|-+-..|+...--||+|-.....-|+++
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~---~~EnEeL~q~L----------~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQL---AAENEELQQHL----------QASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776666655544333 23344444333 2334455555555556666666666666666
Q ss_pred hhhHHH
Q 005005 401 DEEIHS 406 (720)
Q Consensus 401 ~~~~~~ 406 (720)
-+|++.
T Consensus 296 QEElk~ 301 (306)
T PF04849_consen 296 QEELKT 301 (306)
T ss_pred HHHHHH
Confidence 666655
No 138
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.52 E-value=25 Score=43.42 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=73.4
Q ss_pred HHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchh
Q 005005 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSF 248 (720)
Q Consensus 169 ~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (720)
+.+++.++.++|-+++.. -.+|+ .-++-|+||+|+++....-+.... +.
T Consensus 361 ~q~~~ql~~le~~~~e~q----~~~qe------~~~e~eqLr~elaql~a~r~q~ek---------------------a~ 409 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQ----REAQE------NREEQEQLRNELAQLLASRTQLEK---------------------AQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 445666677777776642 22222 223445999999987444211111 00
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (720)
.. ...+...+.-.++-++.+|.++. .|..|...|-.+..+.-.++.+++.++-+++-..- +|=+.|
T Consensus 410 ~~-~ee~e~~~l~~e~ry~klkek~t----------~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~---~L~d~l 475 (980)
T KOG0980|consen 410 VL-VEEAENKALAAENRYEKLKEKYT----------ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT---NLNDQL 475 (980)
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHH
Confidence 00 33444455556666777776554 46677888888899999999999888774433333 356666
Q ss_pred HHHHHHHHH
Q 005005 329 ENLQGLLAK 337 (720)
Q Consensus 329 ~~l~~~l~~ 337 (720)
|.++...+.
T Consensus 476 e~~~~~~~~ 484 (980)
T KOG0980|consen 476 EELQRAAGR 484 (980)
T ss_pred HHHHHHHHH
Confidence 666655544
No 139
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.34 E-value=8.8 Score=49.66 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCC
Q 005005 153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE 232 (720)
Q Consensus 153 ~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
-|..-+|++-++..+|+....++..-+.+|.+.+..+ .+-.-...-|+.|.++.+.-+...... ..+.
T Consensus 280 ERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL---~ELe~rL~kLEkQaEkA~kyleL~ee~-----lr~q---- 347 (1486)
T PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL---AELNEAESDLEQDYQAASDHLNLVQTA-----LRQQ---- 347 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH----
Confidence 4556667777777777777777777777777775554 233334445666666666554443210 0000
Q ss_pred CcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 005005 233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (720)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~ 312 (720)
.........+..+..++....++-..++..+..+..+ +...++.+..+.++++.+...+..++.++...+..+.
T Consensus 348 ---~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeE---leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 348 ---EKIERYQADLEELEERLEEQNEVVEEADEQQEENEAR---AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001111122222222222222222223222222 2334455556666666666666666666666666666
Q ss_pred ccccchhhh
Q 005005 313 KLSTLKVEC 321 (720)
Q Consensus 313 ~~~~~~~~~ 321 (720)
.+..-+.=|
T Consensus 422 ~Le~~~~~~ 430 (1486)
T PRK04863 422 ALERAKQLC 430 (1486)
T ss_pred HHHHHHHHh
Confidence 665555555
No 140
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.27 E-value=2.2 Score=51.13 Aligned_cols=147 Identities=24% Similarity=0.362 Sum_probs=76.9
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhh----------hhcchhHH
Q 005005 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----------NLSLKNDI 266 (720)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----------n~~~k~~~ 266 (720)
+.+-=|+++|++||.|++....+. +.|. +. -|.+.++.||.| -|.||+-+
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~----------~~~~-------~~---~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL 488 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESS----------SKPS-------EL---ALNEMIEKLKKEIDLEYTEAVIAMGLQERL 488 (762)
T ss_pred CCCccHHHHHHHHHHHHHhccccc----------CCCC-------Ch---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444558999999999999863221 1111 00 233445555544 36788888
Q ss_pred HHHHHHhhhhhh--------hhhHHHHHHhhhh----------hHHhhHHHHH--hhhhcchhhhhccccchhhhhh-HH
Q 005005 267 KVLKAELNSVKD--------ADERVVMLEMERS----------SLESSLKELE--SKLSISQEDVAKLSTLKVECKD-LY 325 (720)
Q Consensus 267 ~~~k~~~~~~~~--------~~~~~~~~~~e~~----------~l~~~~~~~e--~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (720)
..|+.+++..+- .-+.+.+|..|-- .|..++.-|- ++--..-+..++-.+|+.|-+. +-
T Consensus 489 ~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 489 ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Confidence 888877777654 2233444433321 1222222111 1111112223345556665332 12
Q ss_pred H------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 005005 326 E------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 365 (720)
Q Consensus 326 ~------~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~ 365 (720)
+ -.+..+++++...+ +. +...-.-+++|+.||.++..-
T Consensus 569 e~~~~~~~kek~ea~~aev~~-~g-~s~~~~~~~~lkeki~~~~~E 612 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVAS-SG-ASSGDELDDDLKEKVEKMKKE 612 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHh-cC-ccccCCCCHHHHHHHHHHHHH
Confidence 2 34456666666666 33 333347788899999888773
No 141
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.21 E-value=12 Score=47.28 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=19.1
Q ss_pred hhhhHhhhhhhhHhh--hHHHHHHHHHHhhhc
Q 005005 187 ARIRVAAQEKIHVEL--LEDQLQKLQHELTHR 216 (720)
Q Consensus 187 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (720)
..|+--|++-...+| --+|++.|..++..+
T Consensus 1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345555555555444 357888888888765
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.17 E-value=30 Score=43.35 Aligned_cols=107 Identities=23% Similarity=0.214 Sum_probs=55.7
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHHHHHhHh------hhhhhc
Q 005005 306 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLEESLDEA------NIYKLS 375 (720)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~l~~~~d~l~~~l~~~------~~~~~~ 375 (720)
...+-++|...|+-|-|.|--|+|-|+.=+...++|- +-+-...-.+..|++.++-...++.+- .--.++
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 4556677777777777777777776665444433221 112223334444555555555444443 111111
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 005005 376 SE--KMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQE 413 (720)
Q Consensus 376 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (720)
.. -.++++++. +++|-+-.+|+.++-|+......+..
T Consensus 475 ~~~Q~~~et~el~-~~iknlnk~L~~r~~elsrl~a~~~e 513 (1195)
T KOG4643|consen 475 LQDQLEAETEELL-NQIKNLNKSLNNRDLELSRLHALKNE 513 (1195)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122344443 34777888888887777665444433
No 143
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.12 E-value=4.4 Score=48.59 Aligned_cols=152 Identities=19% Similarity=0.262 Sum_probs=105.7
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 005005 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (720)
Q Consensus 252 ~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 331 (720)
..+|-+=|.-|-+++.++...=-.-.+..|++.+|+.+-..+.++|.+.-.++.-.-+- .+--.-+++ |-|
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh-~~rlsdtvd--------Erl 204 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEH-NKRLSDTVD--------ERL 204 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccH--------HHH
Confidence 45566667788899988888777888999999999988888888877665554433222 221111222 223
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 005005 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (720)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (720)
|.-+. .--+ .|+.-..|-..++.++.-|++++-.| ++++-.++.|++.+++|+++.+.-.++++..+..|
T Consensus 205 qlhlk----erma---Ale~kn~L~~e~~s~kk~l~~~~~~k---~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~ 274 (916)
T KOG0249|consen 205 QLHLK----ERMA---ALEDKNRLEQELESVKKQLEEMRHDK---DKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTY 274 (916)
T ss_pred HHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhh
Confidence 32222 2222 24445556666677777777766554 67888999999999999998888889999999999
Q ss_pred HHHHHHHHHHH
Q 005005 412 QESVKEFQDTL 422 (720)
Q Consensus 412 ~~~~~~~~~~l 422 (720)
++.+.+.+.+.
T Consensus 275 ~e~~~~~~~~~ 285 (916)
T KOG0249|consen 275 AERRRETETTN 285 (916)
T ss_pred HHHHHhhcchh
Confidence 99988877763
No 144
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.87 E-value=29 Score=42.43 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005005 150 LNEARVQALEDLHKILQEKEALQGEIN 176 (720)
Q Consensus 150 l~~~r~~a~~~~~~~~~ek~~lq~~~~ 176 (720)
+-+++..+-+....+-..++.|++++.
T Consensus 169 ~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 169 YEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666655
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=4.6 Score=47.27 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=84.2
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHh-------hHHHHHhhhhcchhhhhcccc
Q 005005 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLES-------SLKELESKLSISQEDVAKLST 316 (720)
Q Consensus 244 ~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~-------~~~~~e~~~~~~~~~~~~~~~ 316 (720)
..|+...+++.|++.|..|-+-|+ ++...+.++..|++.++.|.. .+..|+++ .|.=--+|.-
T Consensus 229 ~~~~i~~~ie~l~~~n~~l~e~i~-------e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k---~~~~~~~l~~ 298 (581)
T KOG0995|consen 229 YFTSIANEIEDLKKTNRELEEMIN-------EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK---KQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 345556666666666665544444 555556666667776665443 33333333 2333344555
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHH
Q 005005 317 LKVECKDLYEKVENLQGLLAKATKQADQ----AISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (720)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (720)
++.||..-=+..|.||..-+...+|++. +.-|=..|++.. +|+.-| .+|+.--|.+++++..
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~----~l~r~l----------~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN----KLKREL----------NKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHh
Confidence 6666666556666666655555555542 222222332221 122222 2333444677777777
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 005005 393 LEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (720)
++--.+..-+++.+.+.=|...+.+..-.
T Consensus 365 ~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 365 LKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766655443
No 146
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=92.72 E-value=0.5 Score=49.65 Aligned_cols=36 Identities=28% Similarity=0.191 Sum_probs=24.0
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
+|||++++.+ |||-=--+- +.++|.+.|+++.++..
T Consensus 1 ~~ki~i~~Gg------t~G~i~~a~-l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 1 PLRIAIVAGE------VSGDLLGAG-LIRALKARAPNLEFVGV 36 (380)
T ss_pred CceEEEEecC------cCHHHHHHH-HHHHHHhcCCCcEEEEE
Confidence 4899988765 444211123 77888888888888864
No 147
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.61 E-value=5.9 Score=42.43 Aligned_cols=163 Identities=22% Similarity=0.343 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH---HHHHHHHHHHHHHHh
Q 005005 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL---YEKVENLQGLLAKAT 339 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~ 339 (720)
+..++.+|++|.+.++. .+++-+.|+..+.+|++++..+|++|+-|+|-+. +.. -=++.+|...|+.++
T Consensus 62 ~~~l~~ak~eLqe~eek------~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vqIa~L~rqlq~lk 133 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEK------EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQIANLVRQLQQLK 133 (258)
T ss_pred hHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 45667777777766654 4577888999999999999999999999999876 222 224567766666644
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchH---HHHHHHHHHHHH-H----HHHHHHHhhchhhHHHHHHHH
Q 005005 340 KQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSE---KMQQYNELMQQK-M----KLLEERLQRSDEEIHSYVQLY 411 (720)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 411 (720)
.+ .++..|.|.+.... .-.+++.. +-+..+.-+-.| . ..+-.+. ..+.-|..++..+
T Consensus 134 ~~-------------qqdEldel~e~~~~-el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~-~~N~~m~kei~~~ 198 (258)
T PF15397_consen 134 DS-------------QQDELDELNEMRQM-ELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRT-LENQVMQKEIVQF 198 (258)
T ss_pred HH-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH
Confidence 32 12223333322211 01111110 000000000000 0 0111122 4567788899999
Q ss_pred HHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHH-HHHHHH
Q 005005 412 QESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF-WSRLLL 451 (720)
Q Consensus 412 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-ws~lll 451 (720)
.+.+.+|...+..|+.+-+. +...+. -|+++ +-.+||
T Consensus 199 re~i~el~e~I~~L~~eV~~--L~~~~~-~~Re~iF~dvll 236 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQ--LQAQAQ-DPREVIFADVLL 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhc-chHHHhhHHHhc
Confidence 99999999999999998887 555444 33333 445554
No 148
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.54 E-value=19 Score=46.10 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHH-HhcCCCCcEEEECchhhhhHHHHHHHhhCc--CCCCCCCEEEEecCC
Q 005005 626 FSRAALELL-LQAGKQPDIIHCHDWQTAFVAPLYWDLYVP--KGLNSARVCFTCHNF 679 (720)
Q Consensus 626 FSRAALElL-~klg~kPDIIHcHDWHTALVaPLyLk~y~~--~gf~~iptVFTIHNL 679 (720)
|+.+++.|- ......|++|++...-+++= |........ ..+ +.-+|+|.|-+
T Consensus 1262 ~a~~~~~y~~~~~~~~p~lilLDEp~a~lD-~~~~~~~~~ll~~l-~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1262 FAAASSHYTQEAYPHAPRLILLDEAFAGVD-DNARAHLFGLLRAL-DLDFVMTSERE 1316 (1353)
T ss_pred HHHHHHhhcccccCCCCCEEEEeCccccCC-HHHHHHHHHHHHHh-CCCEEEEccch
Confidence 554444443 23456899999999887765 333211111 011 45678887754
No 149
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.51 E-value=20 Score=44.83 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=57.1
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 322 (720)
..+..|+..++++..+++...-++...+.-|. ...+-+.++++.-+.++.+|++=|+.+...+++..++.--..+--
T Consensus 294 ~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~---~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s 370 (1174)
T KOG0933|consen 294 GEVKALEDKLDSLQNEITREETSLNLKKETLN---GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDS 370 (1174)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33458899999999999988888887777665 345556677777777777777777777777666666554443333
Q ss_pred hHHHHHH
Q 005005 323 DLYEKVE 329 (720)
Q Consensus 323 ~~~~~~~ 329 (720)
.++++.+
T Consensus 371 ~~~e~~e 377 (1174)
T KOG0933|consen 371 KLLEKAE 377 (1174)
T ss_pred HHHHHHH
Confidence 3444443
No 150
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=37 Score=42.72 Aligned_cols=217 Identities=23% Similarity=0.326 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccc
Q 005005 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (720)
Q Consensus 159 ~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (720)
.++++-..|-+..+++|+-|||||+-..-.+ .+.- -+++.++-+++...+++..-+ |-
T Consensus 669 ~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~--~~~k-~~l~~~~~El~~~~~~i~~~~---------------p~---- 726 (1141)
T KOG0018|consen 669 KEIQKRRKEVSSVESKIHGLEMRLKYSKLDL--EQLK-RSLEQNELELQRTESEIDEFG---------------PE---- 726 (1141)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhhC---------------ch----
Confidence 3444444577788999999999998764333 3332 666677777777666665211 11
Q ss_pred ccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhh----------------hhhH--HHHHHhhhhhHHhhHHHH
Q 005005 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD----------------ADER--VVMLEMERSSLESSLKEL 300 (720)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~----------------~~~~--~~~~~~e~~~l~~~~~~~ 300 (720)
+..+-.+++.. ...+..|+.+.+.|.+ -+|+ -....++|..++..+.-|
T Consensus 727 ------i~~i~r~l~~~-------e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 727 ------ISEIKRKLQNR-------EGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred ------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333 3334444444443332 2222 233445666677777777
Q ss_pred HhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHH
Q 005005 301 ESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQ 380 (720)
Q Consensus 301 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~ 380 (720)
|.+|.--+. +..+-...-|-..|++++.-+++..++.+-+...+... +.|+.-+ |--+++++
T Consensus 794 ~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-----------~~~e~k~--k~~~~~~~ 855 (1141)
T KOG0018|consen 794 ENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-----------EELEKKN--KSKFEKKE 855 (1141)
T ss_pred hhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-----------HHHHHHH--HHHHHHHH
Confidence 777765443 44443334777889999999988777666665554444 3333312 33334443
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 005005 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEE 428 (720)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 428 (720)
..-.-....+..+=..++..+.+|.+-=..-..-..|-|++|.+-|=+
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 333333444455555666677777665444455555666777665543
No 151
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.47 E-value=11 Score=42.28 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHhhh
Q 005005 201 LLEDQLQKLQHELTH 215 (720)
Q Consensus 201 ~~~~~~~~~~~~~~~ 215 (720)
.++.|+.+++.+|..
T Consensus 165 fl~~ql~~~~~~L~~ 179 (498)
T TIGR03007 165 FIDEQIKTYEKKLEA 179 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 152
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=91.96 E-value=0.46 Score=56.34 Aligned_cols=137 Identities=21% Similarity=0.336 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhh-------------hh-------hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhc--hHHHHHH
Q 005005 325 YEKVENLQGLLAKATKQ-------------AD-------QAISVLQQNQELRKKVDKLEESLDEANIYKLS--SEKMQQY 382 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~-------------~~-------~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~--~~~~~~~ 382 (720)
-++.+.++..|.++++. .| ....+.-+..+.++||+++=.++.- +.+.+. ....++.
T Consensus 152 ~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f-~~~~~p~~~~~p~e~ 230 (759)
T PF01496_consen 152 REKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGF-ERYDLPEDEGTPEEA 230 (759)
T ss_dssp HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT---B----GGGGG-HHH
T ss_pred hhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCc-eecCCCCccccHHHH
Confidence 46888999999988876 11 1223333445567777777666532 333332 2245566
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHh-hhhhhccc
Q 005005 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLII-DGWLLEKK 461 (720)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllri-d~~~l~~~ 461 (720)
-..++++++.+++.++...+++.+.+.-|...+....+.+.+.+...+.. +.+.-.- +..+++|-
T Consensus 231 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~GW 296 (759)
T PF01496_consen 231 IKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEAL--------------NKFASTETNVFILEGW 296 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHTT---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhccccccEEEEEEe
Confidence 77888999999999999999999988888888777777766655544331 1111111 23455566
Q ss_pred CChhHHHHHHHHHHh
Q 005005 462 LSTSEAKLLREMVWK 476 (720)
Q Consensus 462 i~~~~as~lr~~v~~ 476 (720)
+..++...+++.+-+
T Consensus 297 vP~~~~~~l~~~l~~ 311 (759)
T PF01496_consen 297 VPEKDVEELKKALEE 311 (759)
T ss_dssp E-TTTHHHHHHT--S
T ss_pred ccHHHHHHHHHHHHh
Confidence 667778888887753
No 153
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.92 E-value=9.6 Score=43.77 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=24.7
Q ss_pred HHHHHHHhH-hhhhhhc-------hHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 360 DKLEESLDE-ANIYKLS-------SEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 360 d~l~~~l~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
+++-++|++ .....++ .+.+++..+.+++.+.+++..++..
T Consensus 252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556667776 3333444 3666666777777777766666333
No 154
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.81 E-value=12 Score=40.29 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=16.0
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhh
Q 005005 248 FSKELDSLKTENLSLKNDIKVLKAELNS 275 (720)
Q Consensus 248 ~~~~~~~~~~en~~~k~~~~~~k~~~~~ 275 (720)
+..++..++.+-..++..++.|++.+..
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455666666666666666555555543
No 155
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.72 E-value=30 Score=40.01 Aligned_cols=129 Identities=24% Similarity=0.330 Sum_probs=58.2
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 005005 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (720)
Q Consensus 252 ~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 331 (720)
|...+.|-..|+..+++|+.+|..++.--.++..=+ ....+.+..|+.++...+....-+..-.-+ --+....|
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e---~~a~~~v~~L~~eL~~~r~eLea~~~~e~~---~k~~~~~l 370 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKERE---KEASSEVSSLEAELNKTRSELEAAKAEEEK---AKEAMSEL 370 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHhhHHHHHHHHHHHHHHHHhhhcc---hhhhHHHH
Confidence 334445556666666666666665554333322211 222333333333333333222221111111 12334445
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
..-|..++..+++|-.- -...+..+. ++++..+.....++-.|.||+..-.++.+
T Consensus 371 ~~~Lqql~~Eae~Ak~e---a~~~~~E~~-----------------~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 371 PKALQQLSSEAEEAKKE---AEEAKEEVE-----------------KAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555211 112222333 33334455566677777777777666655
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.65 E-value=6.9 Score=40.38 Aligned_cols=109 Identities=21% Similarity=0.301 Sum_probs=71.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
.|-..+..+-+.|.-|.++|+.|+.++-...-.-++-..++.|-..|...++.||..-....+-. .-++-|-..|-.
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~---rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA---RQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45566777778888888889988888888888888888888888889999988887654333322 233444445556
Q ss_pred HHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHHHHHHH
Q 005005 327 KVENLQGLLAK-------ATKQADQAISVLQQNQELRKKVDK 361 (720)
Q Consensus 327 ~~~~l~~~l~~-------~~~~~~~~~~~~~~~~~l~~~~d~ 361 (720)
++++||.--.+ ..++..+ .-..+.+|+.+|=.
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~e---L~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKE---LATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHH---HHHhhHHHHHHHHH
Confidence 66666543333 2222222 22466677777633
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.64 E-value=24 Score=41.79 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=20.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
.|+..+......++ -..|..-|-|+-..+.|-+++=.|
T Consensus 472 qL~~e~e~~~k~~~--Rs~Yt~RIlEIv~NI~KQk~eI~K 509 (594)
T PF05667_consen 472 QLVKELEKLPKDVN--RSAYTRRILEIVKNIRKQKEEIEK 509 (594)
T ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444433 356777777766666666655544
No 158
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.63 E-value=2.6 Score=47.18 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHH
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLE 363 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~ 363 (720)
.++..|+..++....+.......-.+...|++.++-.+
T Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~ 368 (498)
T TIGR03007 331 ARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNK 368 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333344444555444443
No 159
>PF13514 AAA_27: AAA domain
Probab=91.51 E-value=29 Score=43.38 Aligned_cols=23 Identities=43% Similarity=0.816 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCCCcEE--EECch
Q 005005 627 SRAALELLLQAGKQPDII--HCHDW 649 (720)
Q Consensus 627 SRAALElL~klg~kPDII--HcHDW 649 (720)
.+++++++..++..-.|| =||+.
T Consensus 1069 ~~~~l~~L~~ls~~~QVI~FTch~~ 1093 (1111)
T PF13514_consen 1069 ARAALELLAELSRRRQVIYFTCHEH 1093 (1111)
T ss_pred HHHHHHHHHHhccCCeEEEEeccHH
Confidence 456666666654444443 55553
No 160
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.04 E-value=40 Score=40.07 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=82.5
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
+|.+|+..||+.+..-..+. +.++.++++..+.+..++-|...-+...+.|+..+.....|+.-- .
T Consensus 423 pL~~e~r~lk~~~~~~~~e~---~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs-----------~ 488 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESES---KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS-----------A 488 (594)
T ss_pred HHHHHHHHHHHHHhhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-----------H
Confidence 77899999998887665554 446777888888888888888888888888888888877775421 1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~ 370 (720)
-+..+-.....-.||-+.--.||.....||+.+..+...|.+.-
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12233334444456777777799999999999999999998753
No 161
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=91.04 E-value=1 Score=49.36 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=31.5
Q ss_pred cCCccccC-CHHHHHHHHHHHHHHC--CCeEEEEecCCCc
Q 005005 521 MAPVAKVG-GLGDVVAGLGKALQKK--GHLVEIVLPKYDC 557 (720)
Q Consensus 521 ~aPfAKVG-GLGDVVgsLPKALa~l--GhEV~VILPkY~~ 557 (720)
+.|++-.| |=..|+=....+|++. ||+|+|++..|..
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 37999888 8888999999999998 8999999988754
No 162
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.02 E-value=55 Score=41.65 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 005005 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 320 (720)
Q Consensus 277 ~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 320 (720)
.-++.+...|+-|++.+++.+..+|..+..+ ..-.+|..++.|
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~-~~~~~L~~~q~d 211 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQLSA-NNRQELARLRSE 211 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence 3456677889999999999999999888744 344455555554
No 163
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.92 E-value=13 Score=39.59 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhh-hHHHHHHHHHHHHHHhH
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQ-NQELRKKVDKLEESLDE 368 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~l~~~~d~l~~~l~~ 368 (720)
+-+++..++.-+..+.+.++.++..+.+ -+.+..|-+.|.+-|..
T Consensus 129 l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 129 LKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3344444444444444445555444444 45566666666555443
No 164
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=90.89 E-value=13 Score=41.15 Aligned_cols=137 Identities=24% Similarity=0.385 Sum_probs=67.6
Q ss_pred HHhhhhhhhhhHHHHHHhhh----------------hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH
Q 005005 271 AELNSVKDADERVVMLEMER----------------SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL 334 (720)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~e~----------------~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (720)
..+..+++-|.||..||+=- ..|-.+|.+|++|++.-+. .+|..++-.-+.|-.+.++|.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~L~~~~~~l~-- 281 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP--AKLDSIERRLKSLLSELEELA-- 281 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH--
Confidence 35677788888888877622 1244567777777766532 344444333333333333322
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhc----hHHHHHHHHHHHHHHHHHHHHHhhc---hhhHHHH
Q 005005 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS----SEKMQQYNELMQQKMKLLEERLQRS---DEEIHSY 407 (720)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 407 (720)
++.+ + ..+..+...||+.|=+.|..-.-|--. .+.|+.++ -||+.+..+=.+|... -.+|.+.
T Consensus 282 --~~~~----~---~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q~~l~~~ 351 (388)
T PF04912_consen 282 --EKRK----E---AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLK-SLHEEAAEFSQTLSELESQQSDLQSQ 351 (388)
T ss_pred --hccc----c---ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 123345557777776666554433221 12222222 2344444444444333 3455566
Q ss_pred HHHHHHHHHHHHHH
Q 005005 408 VQLYQESVKEFQDT 421 (720)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (720)
+.-+...+...+..
T Consensus 352 l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 352 LKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555554
No 165
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=90.82 E-value=24 Score=41.44 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=94.7
Q ss_pred HHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcchhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecc-----
Q 005005 446 WSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAE----- 520 (720)
Q Consensus 446 ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE----- 520 (720)
|++.-.++-.|=+++--. +.|...+++. ..-+++-+..|+..++.|.+..++ -.+|++++..
T Consensus 220 y~~f~~~~q~~Gfe~GWG-~ta~rv~et~--------~lL~dll~aPdp~~LE~Fl~RiPm----vf~vvliSpHG~f~q 286 (550)
T PF00862_consen 220 YSEFEHKLQELGFEPGWG-DTAERVLETM--------HLLSDLLEAPDPSTLEKFLSRIPM----VFNVVLISPHGYFGQ 286 (550)
T ss_dssp HHHHHHHHHHHTB-B-S--SBHHHHHHHH--------HHHHHHHHS--HHHHHHHHHHS-------SEEEEE--SS--ST
T ss_pred HHHHHHHHHHhCCCCCCC-CcHHHHHHHH--------HHHHHHHhCCCchHHHHHhhhcce----eEEEEEEcCcccccc
Confidence 777767777776654433 2345555554 234567789999999999865443 3789999876
Q ss_pred --cCCccccCCHHHHHHHHHHHHHH--------CCCe----EEEEecCCCccccccc-ccceeeEEEEeeecCCceeEEE
Q 005005 521 --MAPVAKVGGLGDVVAGLGKALQK--------KGHL----VEIVLPKYDCMQYDRI-DDLRALDVVVESYFDGRLFKNK 585 (720)
Q Consensus 521 --~aPfAKVGGLGDVVgsLPKALa~--------lGhE----V~VILPkY~~I~~~~v-~~L~~l~V~v~s~f~G~~~~v~ 585 (720)
+....-|||==.+|-.+.+||.. +|.+ |.|+++.-+...-... ..+.. +.|.. .+.
T Consensus 287 ~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~--------~~gt~-~a~ 357 (550)
T PF00862_consen 287 ENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEK--------VSGTE-NAR 357 (550)
T ss_dssp TSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEE--------ETTES-SEE
T ss_pred ccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccc--------cCCCC-CcE
Confidence 23333589977788888888864 4554 5555443222110000 01111 01111 112
Q ss_pred EEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcC
Q 005005 586 VWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPK 665 (720)
Q Consensus 586 Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~ 665 (720)
|.+....+-.- .++ .+..|-.++++ .++|+ -.++-++....+..||+||.|=--.++++.++....
T Consensus 358 IlRvPF~~~~g-i~~-----kwisrf~lWPy---Le~fa--~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~l--- 423 (550)
T PF00862_consen 358 ILRVPFGPEKG-ILR-----KWISRFDLWPY---LEEFA--DDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKL--- 423 (550)
T ss_dssp EEEE-ESESTE-EE------S---GGG-GGG---HHHHH--HHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHH---
T ss_pred EEEecCCCCcc-hhh-----hccchhhchhh---HHHHH--HHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhc---
Confidence 22221111000 111 13334445543 12332 122234445567799999999888899865554432
Q ss_pred CCCCCCEEEEecCCC
Q 005005 666 GLNSARVCFTCHNFE 680 (720)
Q Consensus 666 gf~~iptVFTIHNLa 680 (720)
+++.++|-|.++
T Consensus 424 ---gv~~~~iaHsLe 435 (550)
T PF00862_consen 424 ---GVTQCFIAHSLE 435 (550)
T ss_dssp ---T-EEEEE-SS-H
T ss_pred ---CCceehhhhccc
Confidence 689999999995
No 166
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=29 Score=41.99 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=102.2
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
....++..+.+.|.-| +.++.+-|..-++|=.||.......+.|.....+..+.+..+++-.. .+-.
T Consensus 458 t~gsA~ed~Qeqn~kL----------~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~---~~~~ 524 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKL----------LQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD---KLEL 524 (698)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4455555555555433 23445556666677777777777777777777777777666655433 4666
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
++-+|+..+...|..+..-+ .++....+++|..=..|.=++-+.+.+|...+..+.+++.++.+...+..++--
T Consensus 525 ~i~~leeq~~~lt~~~~~l~------~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLI------KELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666654432 345555666666666666677777777777777777777777777766655432
Q ss_pred --HH-HHHHHHHHHHHHHHHhhHHhhh
Q 005005 407 --YV-QLYQESVKEFQDTLHSLKEESK 430 (720)
Q Consensus 407 --~~-~~~~~~~~~~~~~l~~~~~~~~ 430 (720)
+. +--++.++.+...|..+++++.
T Consensus 599 ~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 599 EKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 22 2234555556666655555444
No 167
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=13 Score=43.71 Aligned_cols=135 Identities=24% Similarity=0.316 Sum_probs=101.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
.-.+|++.-+.||--||+-|..|.. +.++.++.+..|..+-++|.|+.-.+.|+| ++|.+=-..=-|
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~---~l~eke~sl~dlkehassLas~glk~ds~L----------k~leIalEqkkE 394 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLKEHASSLASAGLKRDSKL----------KSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hHHHHHHHHHHH
Confidence 4578899999999999999999998 456778889999999999888877776654 444442112246
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (720)
+.-.+.+.|-+|.+..|.|- +--.-.|+++.|+ .+++-|+--|-+.|..++.+-+=.|.+|.--.--|
T Consensus 395 ec~kme~qLkkAh~~~ddar-~~pe~~d~i~~le------~e~~~y~de~~kaqaevdrlLeilkeveneKnDkd 462 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHNIEDDAR-MNPEFADQIKQLE------KEASYYRDECGKAQAEVDRLLEILKEVENEKNDKD 462 (654)
T ss_pred HHHHHHHHHHHHHHhhHhhh-cChhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 67778899999999999984 4444555555555 37888888888999999988887777775443333
No 168
>PLN02939 transferase, transferring glycosyl groups
Probab=90.61 E-value=8 Score=48.03 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 351 QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 351 ~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
|..-+-.||+.|+..|+.|.---.-.--+-+-|.-||.||..||+.|.+.+..-
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (977)
T PLN02939 294 QYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSK 347 (977)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhh
Confidence 334577888888888877653322222223446678999999999998876543
No 169
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.33 E-value=6.2 Score=48.49 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=79.6
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 005005 269 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISV 348 (720)
Q Consensus 269 ~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 348 (720)
+-.+|.++. -|-...|-+|-..+.-..++|+.+..+||+-+...+- -.+.+-|-|.+||+.|.-.++|.....--
T Consensus 480 ~~EQL~Esn--~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdq---TI~KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 480 MNEQLQESN--RELELDLREELDMAKGARKELQKRVEAAQETVYDRDQ---TIKKFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 334444432 3445667788888888899999999999998776543 33456789999999998888887777666
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005005 349 LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (720)
Q Consensus 349 ~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (720)
++|..-+. .+.-.||.---.-.-|-.-+.++++.+|=++++-.-
T Consensus 555 s~q~~s~~----------~et~dyk~~fa~skayaraie~QlrqiEv~~a~rh~ 598 (1243)
T KOG0971|consen 555 SQQPPSVD----------PETFDYKIKFAESKAYARAIEMQLRQIEVAQANRHM 598 (1243)
T ss_pred hcCCCCCc----------hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665322 122233322222233777888888888887765443
No 170
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.25 E-value=9.1 Score=41.08 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=11.0
Q ss_pred CCCeEEEEecCCCcc
Q 005005 544 KGHLVEIVLPKYDCM 558 (720)
Q Consensus 544 lGhEV~VILPkY~~I 558 (720)
.|..|.|-++.|+.-
T Consensus 326 ~G~~v~v~~~~~~~~ 340 (423)
T TIGR01843 326 VGQPAEIKFSAFPYR 340 (423)
T ss_pred CCCceEEEEecCCCc
Confidence 467888888887643
No 171
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.00 E-value=8.4 Score=36.60 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=70.2
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (720)
+++.|+.|.-.++..+.....++....+ .++........+=...|..+.-=-+|+-.|..++-++..+-..+..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~------dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLRE------DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333222 2334444444555556666666667788888888877776666666
Q ss_pred HHHHHHHHhhhhhhHHHH-hhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHH
Q 005005 331 LQGLLAKATKQADQAISV-LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (720)
Q Consensus 331 l~~~l~~~~~~~~~~~~~-~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (720)
|+.-.+.|....+.+-.. -.+-..|.+.++.++. +++.|..-|.+|++++..+
T Consensus 78 l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~----------r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 78 LKAEAESAKAELEESEASWEEQKEQLEKELSELEQ----------RIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 666666655554433221 2233344444444433 4566777888888877643
No 172
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.92 E-value=11 Score=43.72 Aligned_cols=101 Identities=24% Similarity=0.228 Sum_probs=71.9
Q ss_pred cCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 005005 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (720)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 319 (720)
.+.--+|-+..+.+.||++|.-|-+-|+.-..-=...+.++|+-..|..----++++..-|++|. |+=.-+++.|+.
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~---~~~~g~l~kl~~ 337 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS---QEWPGKLEKLKS 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 34556777888888888888888888877766666777788888777777777888888888874 455566677777
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhh
Q 005005 320 ECKDLYEKVENLQGLLAKATKQAD 343 (720)
Q Consensus 320 ~~~~~~~~~~~l~~~l~~~~~~~~ 343 (720)
||.--=+.++.||+-.|...+|..
T Consensus 338 eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 338 EIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 776555555555555555555544
No 173
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.84 E-value=22 Score=44.54 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=69.3
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (720)
...++.|..|++..-.+|+...+.+...++.-+.+...-.|--. .-++.--..|.-..+|.+++.|-+---+|+
T Consensus 733 ~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~------~~~~~~~~l~~e~~~l~~l~~el~~r~dk~ 806 (1074)
T KOG0250|consen 733 ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEE------YYAAGREKLQGEISKLDALKEELKLREDKL 806 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45577778888888888887777776666655544322211111 111112233444455555555533223333
Q ss_pred HHHHHHHHHHhhhhhhHHH--HhhhhHHHHHHHHHHHHHHhHhh----hhhh-----------chHHHHHHHHHHHHHHH
Q 005005 329 ENLQGLLAKATKQADQAIS--VLQQNQELRKKVDKLEESLDEAN----IYKL-----------SSEKMQQYNELMQQKMK 391 (720)
Q Consensus 329 ~~l~~~l~~~~~~~~~~~~--~~~~~~~l~~~~d~l~~~l~~~~----~~~~-----------~~~~~~~~~~~~~~~~~ 391 (720)
.+-.+.. .-.++++ +|+.-...+.++..++..+.+.. ..-- +.+.|...+..|+.+++
T Consensus 807 ~s~e~~~-----~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~ 881 (1074)
T KOG0250|consen 807 RSAEDEK-----RHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQ 881 (1074)
T ss_pred hhhhhhh-----hhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHH
Confidence 2211110 0111111 13323333444555555544432 1111 12556666667777777
Q ss_pred HHHHHHhhchhhHHHH
Q 005005 392 LLEERLQRSDEEIHSY 407 (720)
Q Consensus 392 ~~~~~~~~~~~~~~~~ 407 (720)
..|+++-.+-+....+
T Consensus 882 ~~ee~~~~~~e~~~~~ 897 (1074)
T KOG0250|consen 882 MCEESLGELEELHRGL 897 (1074)
T ss_pred HHHHhcchHHHHHHHH
Confidence 7776666555444443
No 174
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.78 E-value=11 Score=38.68 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 005005 382 YNELMQQKMKLLEERLQRSDEEIHSYVQ 409 (720)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (720)
-|-+|++|++.+.+.+..-+.++.+.+.
T Consensus 144 kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 144 KNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888877777777776554
No 175
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.76 E-value=27 Score=40.86 Aligned_cols=158 Identities=25% Similarity=0.270 Sum_probs=101.0
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHH----Hhh---hhcchhhhhcccc-
Q 005005 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKEL----ESK---LSISQEDVAKLST- 316 (720)
Q Consensus 246 ~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~-~~~~e~~~l~~~~~~~----e~~---~~~~~~~~~~~~~- 316 (720)
-+|-+-|..+++||+.|+...--+|++-.-+.+-+..++ +++||-.-++..++-+ ++| ++.-|+..+||-.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778899999999999999999998877777777777 7788766655554433 443 5566777766544
Q ss_pred ---chhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh----------hhhhchHHHHHHH
Q 005005 317 ---LKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN----------IYKLSSEKMQQYN 383 (720)
Q Consensus 317 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~----------~~~~~~~~~~~~~ 383 (720)
++-+-+.+--.+|.|..+|.-+...-++ .-....++++|--.+.+-|.||- .-+.+++..+.+-
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q---l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ---LTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 3434344444445555555433322222 23466788888888877777763 2244444444443
Q ss_pred ------HHHHHHHHHHHHHHhhchhhHHH
Q 005005 384 ------ELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 384 ------~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
.+.++|+.+.++.=..-|+++-.
T Consensus 319 ~~fp~~~~aae~i~lt~r~~~qldee~s~ 347 (596)
T KOG4360|consen 319 HHFPQLSLAAEKIELTMRKNLQLDEEASQ 347 (596)
T ss_pred hhCChhhHHHHHHHHhhhhhhcccccccc
Confidence 56778888877766666666544
No 176
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.65 E-value=4.2 Score=44.68 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~ 364 (720)
.+...|+.-++....+..+.-..-.+...|+++++-.+.
T Consensus 318 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~ 356 (444)
T TIGR03017 318 QREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQR 356 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444544444443333344455566666655444
No 177
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=89.45 E-value=22 Score=43.21 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=25.9
Q ss_pred HhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc
Q 005005 170 ALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 170 ~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (720)
.||+++..|...++++. -++.+.--.+|.+-+|||++|+-++
T Consensus 433 ~Le~elekLk~eilKAk-----~s~~~~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 433 ELEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred cHHHHHHHHHHHHHhcc-----cccCCCCChHHHHHHHHHHHHHHHH
Confidence 35566655555555551 1233444457778889998888775
No 178
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.36 E-value=6.8 Score=42.40 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHhhhhhHHHHHHH-----HHHHHHHHHHHHHH-HHHhhhhhhHHHhhhhchh
Q 005005 138 SMIRNAEKNILLLNEA-----RVQALEDLHKILQE-KEALQGEINALEMRLAETD 186 (720)
Q Consensus 138 ~~~~~~~~~i~~l~~~-----r~~a~~~~~~~~~e-k~~lq~~~~~l~~~l~e~~ 186 (720)
..++|.-.+-.+...+ |.+-++.+...|.+ .+.|+...+.|...++..+
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555543 55666666555543 4556666666665555544
No 179
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=59 Score=39.46 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=97.0
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHH
Q 005005 135 NLISMIRN-AEKNILLLNEARVQALEDLHKILQEKEALQGEINAL--EMRLAETDARIRVAAQEKIHVELLEDQLQKLQH 211 (720)
Q Consensus 135 ~~~~~~~~-~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l--~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (720)
+++++.++ +++=..++.+.+..--. -..|+..|.+++...+.+ .++++.-+.+.+|-...+.-++-+..++.++-.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~e~~k-~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k 414 (698)
T KOG0978|consen 336 KLRSKLLESAKKLKILLREKDRESQK-ERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDK 414 (698)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888 66666677666655433 345777777777753332 234444555555543333334444444444332
Q ss_pred HhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 005005 212 ELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS 291 (720)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~ 291 (720)
+-... ..--. +.+....-..+-+++++|..+-+++.-|-..++...++..+ -.+++..|-
T Consensus 415 ~e~~e-------~~k~~------~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed---~Qeqn~kL~---- 474 (698)
T KOG0978|consen 415 EERSE-------IRKQA------LDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED---MQEQNQKLL---- 474 (698)
T ss_pred HHHHH-------HHhhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----
Confidence 22211 00000 00001111234466777777666666555555554444433 334333332
Q ss_pred hHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH
Q 005005 292 SLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQE 354 (720)
Q Consensus 292 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 354 (720)
.+++.+--..=.=+++.-......+.|-++-..|...+...+.+++.......++++
T Consensus 475 ------~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee 531 (698)
T KOG0978|consen 475 ------QELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE 531 (698)
T ss_pred ------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223344444555566677777777777777777777666555555444
No 180
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.32 E-value=9.3 Score=41.34 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=40.9
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
.|...++.|+++...|...++.+..-+. ...++...|++|...|++...+ ....|-.+|..++.+-...-.
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~---~l~~~~~~L~~e~~~Lk~~~~e------~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLP---KLRERKAELEEELENLKQLVEE------IESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh------hhhcCHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443332222 2233334444454444444444 445666777777766666666
Q ss_pred HHHHHHHHHHH
Q 005005 327 KVENLQGLLAK 337 (720)
Q Consensus 327 ~~~~l~~~l~~ 337 (720)
+++..+..|+.
T Consensus 224 ~i~~~k~~l~e 234 (325)
T PF08317_consen 224 EIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 181
>PRK11281 hypothetical protein; Provisional
Probab=89.29 E-value=27 Score=44.31 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=19.9
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 005005 281 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 320 (720)
Q Consensus 281 ~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 320 (720)
.+...|+-|++.++....-.+..+. +......|..++.|
T Consensus 192 ~~~~~l~ae~~~l~~~~~~~~~~l~-~~~~l~~l~~~q~d 230 (1113)
T PRK11281 192 SQRVLLQAEQALLNAQNDLQRKSLE-GNTQLQDLLQKQRD 230 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 4556666666666665544444433 33444444444443
No 182
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.19 E-value=39 Score=39.86 Aligned_cols=153 Identities=21% Similarity=0.306 Sum_probs=82.9
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhH-HHHHhhhhcchhhhhccccchh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSL-KELESKLSISQEDVAKLSTLKV 319 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~----~~~~~~~~~~~~e~~~l~~~~-~~~e~~~~~~~~~~~~~~~~~~ 319 (720)
+-.+-.|+..||.||--|.++|..+|.+|+.- -+...++-.|..|...+...- .+++.....++-|.. +....
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~ 241 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNRE 241 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchH
Confidence 44678899999999999999999999877642 355667778888888776332 344555555566664 33333
Q ss_pred hhhh-HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhh-hhchHHH---HHHHHHHHHHHHHHH
Q 005005 320 ECKD-LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY-KLSSEKM---QQYNELMQQKMKLLE 394 (720)
Q Consensus 320 ~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~ 394 (720)
+.++ |..-+..+++.-+.--.+..+.+- .-.++||+++..+-+.++.. -..-|.+ +.-..-|+.|+-.||
T Consensus 242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE-----~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE 316 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYEAISRQNRKDIE-----SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc
Confidence 2221 233333333333331111111111 12678899988765555432 1222222 222233455555555
Q ss_pred HHHhhchhhH
Q 005005 395 ERLQRSDEEI 404 (720)
Q Consensus 395 ~~~~~~~~~~ 404 (720)
.|-......|
T Consensus 317 ~~n~~L~~~I 326 (546)
T KOG0977|consen 317 SRNSALEKRI 326 (546)
T ss_pred ccChhHHHHH
Confidence 5444444433
No 183
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.90 E-value=41 Score=40.11 Aligned_cols=114 Identities=24% Similarity=0.354 Sum_probs=79.0
Q ss_pred hhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhH
Q 005005 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSK 250 (720)
Q Consensus 171 lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (720)
.+.+|+.+=..|+-+.. ++.-+|.+.+-||+.++.-..+ ..+ ...+.+|....
T Consensus 233 k~aev~lim~eLe~aq~----------ri~~lE~e~e~L~~ql~~~N~~------------~~~-----~~~~~i~~~~~ 285 (629)
T KOG0963|consen 233 KAAEVSLIMTELEDAQQ----------RIVFLEREVEQLREQLAKANSS------------KKL-----AKIDDIDALGS 285 (629)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhh------------hhh-----ccCCchHHHHH
Confidence 34455555555544443 3445677777788777663211 111 13456889999
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDA-DERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~ 312 (720)
-|+..-.||..|-+||+.+++.+.+--++ -.-|..||+|-....+.|.+|+.+|-. +.|.-
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~-~sDYe 347 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS-RSDYE 347 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccHH
Confidence 99999999999999999999988765444 356788999999999999999888754 35543
No 184
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=54 Score=38.98 Aligned_cols=245 Identities=23% Similarity=0.347 Sum_probs=118.5
Q ss_pred HHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcc
Q 005005 165 LQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (720)
Q Consensus 165 ~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (720)
..+-+.|+.+|.+|-..|.+|-..+--||+ .+.++||+. +
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAe--yGL~lLeeK-~------------------------------------- 46 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAE--YGLELLEEK-E------------------------------------- 46 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-H-------------------------------------
Confidence 456677888888888888887665555555 455666432 1
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~--~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 322 (720)
.|-+.|+.|..|--+.+..|..+|+.+-...-.-.++. +++.|-++|+.|-..=+. =+.++-.|+-|-|
T Consensus 47 --~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~-------yl~kI~eleneLK 117 (772)
T KOG0999|consen 47 --DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEY-------YLQKILELENELK 117 (772)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Confidence 22333444444444444455555555544444444433 346666776544322111 2233444555555
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHH--------------HHHHH-----
Q 005005 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEK--------------MQQYN----- 383 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~--------------~~~~~----- 383 (720)
.+-..+++.|.=.++.++-+.. .-.-|+++..+--+|..-|++ |||+--. ||+.+
T Consensus 118 q~r~el~~~q~E~erl~~~~sd---~~e~~~~~E~qR~rlr~elKe---~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 118 QLRQELTNVQEENERLEKVHSD---LKESNAAVEDQRRRLRDELKE---YKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhcchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 5656666666655554433221 122333333333333333333 2222111 12211
Q ss_pred -----HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhh-----ccCC--CCCCCCHHHHHHHHH
Q 005005 384 -----ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKR-----AVHE--PVDDMPWEFWSRLLL 451 (720)
Q Consensus 384 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~--~~~~~~~~~ws~lll 451 (720)
+-+...++.|||-..--+.+..--+.|-.-.=+.....|..|+.|.+.+ -+.. .+++| ...+.|++
T Consensus 192 sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~--~~~n~l~~ 269 (772)
T KOG0999|consen 192 SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDI--SSLNHLLF 269 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhh--hhhhhhhe
Confidence 2334455666655443333333333333333334445677777666533 2222 34444 55688999
Q ss_pred Hhhh-hhhcccCChhH
Q 005005 452 IIDG-WLLEKKLSTSE 466 (720)
Q Consensus 452 rid~-~~l~~~i~~~~ 466 (720)
-||+ ..=.+-..+.|
T Consensus 270 sldgk~~eDga~pn~d 285 (772)
T KOG0999|consen 270 SLDGKFGEDGAEPNND 285 (772)
T ss_pred ecccccccccCCCCCC
Confidence 9997 33333333333
No 185
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.51 E-value=42 Score=36.64 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=62.6
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh-
Q 005005 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI- 371 (720)
Q Consensus 293 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~- 371 (720)
+..+|.|+..++..-.+.-.+ +..|-..|-+|...|-...+. + ++.+.-+-...+|+-++ +++-|+.++.
T Consensus 112 Fq~~L~dIq~~~ee~~~~~~k---~~~eN~~L~eKlK~l~eQye~---r-E~~~~~~~k~keLE~Ql--~~AKl~q~~~~ 182 (309)
T PF09728_consen 112 FQATLKDIQAQMEEQSERNIK---LREENEELREKLKSLIEQYEL---R-EEHFEKLLKQKELEVQL--AEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHhccchhHH---HHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHhhHHHHHHHH--HHHHHHHHHHH
Confidence 566777777777665555444 333333344444433333332 2 22222222344444333 2222332221
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 005005 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (720)
.+-..++.+++++.|=.+...++ .|.....+...||.+|.+-.++||+||.+
T Consensus 183 ~~~e~~k~~~~~~~~l~~~~~~~-~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~k 234 (309)
T PF09728_consen 183 AEQEKEKAKQEKEILLEEAAQVQ-TLKETEKELREQLNLYSEKFEEFQDTLNK 234 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223444455553333333222 35556778899999999999999999864
No 186
>PRK09039 hypothetical protein; Validated
Probab=88.44 E-value=17 Score=39.99 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 005005 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 353 ~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
.+++.++..|++.|.+... .+++ .+.-..+|+++|..|+.++..-..+|.+ -++..++.|..++.|.
T Consensus 112 ~~~~~~~~~l~~~L~~~k~--~~se-~~~~V~~L~~qI~aLr~Qla~le~~L~~----ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQ--VSAR-ALAQVELLNQQIAALRRQLAALEAALDA----SEKRDRESQAKIADLG 178 (343)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3555666666666655432 1222 2334567788888887776655544444 3334455555555553
No 187
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.01 E-value=56 Score=37.51 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=42.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHh
Q 005005 138 SMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHEL 213 (720)
Q Consensus 138 ~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (720)
.-+.+++++|--+|...-..=+...+..++.-.+..+|+.++..|.+|...++...+ ...-++..|++|+.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~---~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK---QIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 446777888877777665555555555555555666666666666665555544333 2334455555555544
No 188
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.76 E-value=49 Score=36.63 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=101.6
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 324 (720)
-++|+.-+...|++|..|+.++..|+++|.+...--+- |...+++........ .+...+
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~Kl----------LR~~la~~r~~~~~~---~~~~~~-------- 125 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKL----------LREKLARQRVGDEGI---GARHFP-------- 125 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH----------HHHHHHhhhhhhccc---cccccc--------
Confidence 35889999999999999999999999998877655443 333444333322110 011111
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchH---------------------HHHHHH
Q 005005 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSE---------------------KMQQYN 383 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~---------------------~~~~~~ 383 (720)
+.=|.|=..|.+++.+..+- -.|++.-+|..|+...|-.+|+--.. .+--.|
T Consensus 126 -~ere~lV~qLEk~~~q~~qL------e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN 198 (319)
T PF09789_consen 126 -HEREDLVEQLEKLREQIEQL------ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN 198 (319)
T ss_pred -hHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 22333333444444444433 23455555555555555555544333 233345
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhc---cCCCCCCCCHHHHHHHHHHhhhhhhc
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS-LKEESKKRA---VHEPVDDMPWEFWSRLLLIIDGWLLE 459 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~~~~~~~ws~lllrid~~~l~ 459 (720)
..|+++++.+++ |.. +-..++..+..+|+. -++..-+-. ....+.=|++.--.++|.. ..--.+
T Consensus 199 RyL~erl~q~qe-------E~~----l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~-~~~~~~ 266 (319)
T PF09789_consen 199 RYLKERLKQLQE-------EKE----LLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLES-ESNGCS 266 (319)
T ss_pred HHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhc-ccccCC
Confidence 555555555544 322 224455556666663 221111100 1123344888777777761 111113
Q ss_pred ccCChhHHHHHHHHHH
Q 005005 460 KKLSTSEAKLLREMVW 475 (720)
Q Consensus 460 ~~i~~~~as~lr~~v~ 475 (720)
--.++..+++|+.++-
T Consensus 267 ~~~~~~s~sdLksl~~ 282 (319)
T PF09789_consen 267 LPASPQSISDLKSLAT 282 (319)
T ss_pred CCCCcchHHHHHHHHH
Confidence 4467788999998874
No 189
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.72 E-value=34 Score=42.77 Aligned_cols=217 Identities=19% Similarity=0.271 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccccc
Q 005005 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (720)
Q Consensus 159 ~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (720)
+.|...+.|..+|++.-..||..+....+.+.---+ .++-++-.+|.+|......+-.+-- ...-|.
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~---~~~~l~kdVE~~rer~~~~~~Ie~l------~~k~~~---- 240 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLED---EIDKLEKDVERVRERERKKSKIELL------EKKKKW---- 240 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------HHhccc----
Confidence 347777888899999999999999888776653333 4667888899999888877554310 011111
Q ss_pred ccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 005005 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 318 (720)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 318 (720)
+ ..--...|++.+|..--.+|.++..+..+.. ......-.||.|++-+.+..+.+-.-+-.+-+.+-++..
T Consensus 241 v----~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~---pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~e-- 311 (1072)
T KOG0979|consen 241 V----EYKKHDREYNAYKQAKDRAKKELRKLEKEIK---PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFE-- 311 (1072)
T ss_pred c----chHhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0 0112356677777766667766666655443 334444455556655555555544444444333222111
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHH-HHHHHHHHHHHHHH
Q 005005 319 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN-ELMQQKMKLLEERL 397 (720)
Q Consensus 319 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 397 (720)
.-+..=++|+.++.-|..+.+++++--. .=+-.++-++.+++-|.+++++.-.-+++|..+ +.+|.+.. -+
T Consensus 312 -k~~~~~~~v~~~~~~le~lk~~~~~rq~---~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~----~~ 383 (1072)
T KOG0979|consen 312 -KLKEIEDEVEEKKNKLESLKKAAEKRQK---RIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSS----KL 383 (1072)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhh----hh
Confidence 0012233455555555555555554311 123456677888888899999888888775443 33343433 34
Q ss_pred hhchhhHH
Q 005005 398 QRSDEEIH 405 (720)
Q Consensus 398 ~~~~~~~~ 405 (720)
..+.++|.
T Consensus 384 ~~~~~~id 391 (1072)
T KOG0979|consen 384 RDSRQEID 391 (1072)
T ss_pred hhhhhhhh
Confidence 44444443
No 190
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.63 E-value=49 Score=36.46 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=36.9
Q ss_pred HHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 005005 363 EESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAV 434 (720)
Q Consensus 363 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 434 (720)
......-+-...+.-.+|+.|-+|+|++. .-..+.|..=..- -..=..|++++.+|..++++.++
T Consensus 210 ~k~~~Kqes~eERL~QlqsEN~LLrQQLd---dA~~K~~~kek~V----iniQ~~f~d~~~~L~ae~ekq~l 274 (305)
T PF14915_consen 210 NKYIGKQESLEERLSQLQSENMLLRQQLD---DAHNKADNKEKTV----INIQDQFQDIVKKLQAESEKQVL 274 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455667778888888754 3333333221111 11123599999999999998543
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.20 E-value=7 Score=40.15 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEECchhhh
Q 005005 624 SFFSRAALELLLQAGKQPDIIHCHDWQTA 652 (720)
Q Consensus 624 afFSRAALElL~klg~kPDIIHcHDWHTA 652 (720)
..+++-+..++...|..+. +.+-|++-
T Consensus 262 ~lLn~nI~~L~~~q~~~~~--~l~~~~~l 288 (302)
T PF10186_consen 262 FLLNKNIAQLCFSQGIDVP--LLDPRDTL 288 (302)
T ss_pred HHHHHHHHHHHHHcCCCCC--cCCchhhH
Confidence 3457777776665554444 67777763
No 192
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=86.85 E-value=49 Score=40.87 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=32.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLK 298 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~----~~~~~~~~~~~~e~~~l~~~~~ 298 (720)
.+.-..|-.|||.++..+-.++.+|-+. .--++.+-.|||+|+-+..-++
T Consensus 315 eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence 3445567778888887777666666554 3445666778888877554433
No 193
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.79 E-value=82 Score=38.12 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhch--hh----HHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHH
Q 005005 378 KMQQYNELMQQKMKLLEERLQRSD--EE----IHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL 451 (720)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lll 451 (720)
+|..+.+.+|+++..+..+++-+. +. +-.|+..|...+-+..+.++.+++.-|..+ ...-.+|=
T Consensus 309 ~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea----------~srk~il~ 378 (660)
T KOG4302|consen 309 NMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEA----------LSRKEILE 378 (660)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 466677788888888888888877 33 445666777777777777776666555422 23456778
Q ss_pred Hhhhhh
Q 005005 452 IIDGWL 457 (720)
Q Consensus 452 rid~~~ 457 (720)
|||.|.
T Consensus 379 ~ve~W~ 384 (660)
T KOG4302|consen 379 RVEKWE 384 (660)
T ss_pred HHHHHH
Confidence 888884
No 194
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.79 E-value=79 Score=37.96 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCCceEEEEecccCCccccCCH--HHHHHHHHHHHHHCCCeEEEE
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGL--GDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGL--GDVVgsLPKALa~lGhEV~VI 551 (720)
..+-||+.|++- .||- -.++..|+.+|+..|..|-+|
T Consensus 528 ~~~~kvI~vtS~------~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 528 ETENNILMITGA------TPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCCCeEEEEecC------CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 345678888863 3444 478999999999999999988
No 195
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=77 Score=39.49 Aligned_cols=233 Identities=21% Similarity=0.265 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc-ccCcccchhhhhcCCCCcccc
Q 005005 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-GVSEHSELDVFANQNEPANED 237 (720)
Q Consensus 159 ~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 237 (720)
.+.++.++.+..++..+..||-|++-..+.+- - .-.+++.+-.++.-. ..+.....+ ......|
T Consensus 557 q~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~-----e-----~~se~e~~l~~l~l~~el~~~~~~d-----~ls~mkd 621 (984)
T COG4717 557 QHWQQLRKALDQLEAAYEALEGRFAAAEAAMA-----E-----WQSEWEEALDELGLSRELSPEQQLD-----ILSTMKD 621 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----H-----HHHHHHHHHHhccCCccCCcHHHHH-----HHHHHHH
Confidence 46778888888888888888888876654432 1 223445555555433 111111111 0111222
Q ss_pred cccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 005005 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELESKLSISQEDVAKLST 316 (720)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~-~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~ 316 (720)
...-+-.+|.|..+..-|++|-...-+-.+.|-+.+ +...++.+.. -.++=|...+ ..-|..-.++|.+..--.-
T Consensus 622 ~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ls~~~~~~r~~~~~e---~~~Ee~r~~le~~~~~t~E 697 (984)
T COG4717 622 LKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVL-EAQFIDLSTLFCVQRLRVAAE---LQKEEARLALEGNIERTKE 697 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHH---HhhHHHHHHHhhhHHHHHH
Confidence 222334455555555555555544444444444333 2222222211 1111111100 0111111222222221111
Q ss_pred chhhhhhHHHH-HHHHHHHHHHHhhhhh----hHHHHhhhhHHHHHHHHHHHHHHh--HhhhhhhchHHHHHHHHHHHHH
Q 005005 317 LKVECKDLYEK-VENLQGLLAKATKQAD----QAISVLQQNQELRKKVDKLEESLD--EANIYKLSSEKMQQYNELMQQK 389 (720)
Q Consensus 317 ~~~~~~~~~~~-~~~l~~~l~~~~~~~~----~~~~~~~~~~~l~~~~d~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~ 389 (720)
+..+-++=-++ =..+-+|+|+++---+ +|+.--+|.++...++..+++.|+ -+.-|.++.+..|..-- ...
T Consensus 698 l~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~--e~E 775 (984)
T COG4717 698 LNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK--EEE 775 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh--hHH
Confidence 11111111111 1245678887764433 456778999999999999999999 67788888875543322 344
Q ss_pred HHHHHHHHhhchhh---HHHHHHHHH
Q 005005 390 MKLLEERLQRSDEE---IHSYVQLYQ 412 (720)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~~~~~~~ 412 (720)
..++|+++..-++| ++++|..-.
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~~~~ 801 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVAALS 801 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667666666654 667665543
No 196
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.50 E-value=1.8 Score=48.47 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 618 DDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 618 DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
++.+.|.-+++..++.+...-...|+||+||.|-.++ |.+++.. ..+.|++|..|-.
T Consensus 109 ~~w~~Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~ll-p~~lr~~----~~~~~i~~f~Hip 165 (460)
T cd03788 109 EDWEAYVRVNRKFADAIAEVLRPGDLVWVHDYHLLLL-PQMLRER----GPDARIGFFLHIP 165 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhHH-HHHHHhh----CCCCeEEEEEeCC
Confidence 3446677777777777766545679999999999998 5555422 2357999999954
No 197
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.45 E-value=25 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhh
Q 005005 409 QLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
.+|...++.-|.....++...+.
T Consensus 628 ~~~~~~~e~~q~~~~~~k~~~~s 650 (1041)
T KOG0243|consen 628 DILSEVLESLQQLQEVLKKDSES 650 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 45666666666666666655443
No 198
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.36 E-value=31 Score=35.64 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=80.2
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
++...++.++.|.-.+=+.=..+-..|.... +.+..+.++ +....+.++..+..+|... ..++.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v---~~l~~~~~~---~~~~~K~~~~~~~k~qk~~----------~~~~~ 120 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEA---EKLEEFREK---QKEERKKTEDIMKRSQKNK----------KELYK 120 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 5666677777777665555444444444321 112222211 2333344443333333222 13556
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhh--hHHHHHHHHHHHHHHhHh--------hhhhhchHHHHHHHHHHHHHHHHHHHH
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQ--NQELRKKVDKLEESLDEA--------NIYKLSSEKMQQYNELMQQKMKLLEER 396 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~--~~~l~~~~d~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (720)
+|+..+.--..+-+.++.|..-+.. +.--.++++|++.-+..+ +-|+....+++.++..-.+++...=..
T Consensus 121 ~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~ 200 (239)
T cd07647 121 KTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQV 200 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555555554322111 101235566666665554 467777777777777777777777777
Q ss_pred Hhhchhh----HHHHHHHHHHHHH
Q 005005 397 LQRSDEE----IHSYVQLYQESVK 416 (720)
Q Consensus 397 ~~~~~~~----~~~~~~~~~~~~~ 416 (720)
||.-+++ +...+-.|...|-
T Consensus 201 ~Q~lEe~Ri~~lk~~l~~y~n~is 224 (239)
T cd07647 201 FQNMEEERIKFLRNALWVHCNLGS 224 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7776665 2334445555543
No 199
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.34 E-value=16 Score=43.43 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 286 LEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 286 ~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
++.+...+.+..+.|+.++...+..+..+...+.|...|...++..+.+++....+.+++
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555555555555544444444
No 200
>PRK11281 hypothetical protein; Provisional
Probab=86.03 E-value=1.1e+02 Score=39.02 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=32.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 005005 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 410 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (720)
..++++--+.+.++++.+-++|++=.+..|.++.-.+.+
T Consensus 395 ~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l 433 (1113)
T PRK11281 395 SEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINL 433 (1113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777888999999999999999999988777666
No 201
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.85 E-value=74 Score=36.75 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=44.3
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 005005 250 KELDSLKTENLSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (720)
Q Consensus 250 ~~~~~~~~en~~~k~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (720)
.|++.|+.|...+++.|+.|..++.. ..+..+.-..++.|+..++.-+++++..+.... .+ ..||.-.+...
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~-e~e~~l~~~el 346 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPEL------TT-EAELRLYYQEL 346 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------ch-HHHHHHHHHHH
Confidence 55666666666666666666666522 223333344566677777777777776654322 22 55666666555
Q ss_pred HHHHHHH
Q 005005 329 ENLQGLL 335 (720)
Q Consensus 329 ~~l~~~l 335 (720)
..++.=+
T Consensus 347 ~~~~ee~ 353 (511)
T PF09787_consen 347 YHYREEL 353 (511)
T ss_pred HHHHHHH
Confidence 5555433
No 202
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.68 E-value=23 Score=36.34 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=17.0
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 005005 248 FSKELDSLKTENLSLKNDIKVLKAELNSV 276 (720)
Q Consensus 248 ~~~~~~~~~~en~~~k~~~~~~k~~~~~~ 276 (720)
+-.+++.++.||..||.=----..+|..+
T Consensus 24 lq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~ 52 (194)
T PF15619_consen 24 LQRKLQELRKENKTLKQLQKRQEKALQKY 52 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888875433333334443
No 203
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.64 E-value=50 Score=39.01 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=49.9
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (720)
-.-.|..||..|-.||.-|+.... .+|..--.+.|.|-+.+...|.+-.+..+.++-++ +.||+.++.
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~--~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei----------~kl~~e~~e 124 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVG--RETSGIKAKYEAELATARKLLDETARERAKLEIEI----------TKLREELKE 124 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHH
Confidence 344577889999999988876543 34444445566666666666666555555444444 445666666
Q ss_pred HHHHHHHHhhhhhh
Q 005005 331 LQGLLAKATKQADQ 344 (720)
Q Consensus 331 l~~~l~~~~~~~~~ 344 (720)
|...++++++.+..
T Consensus 125 lr~~~~~~~k~~~~ 138 (546)
T KOG0977|consen 125 LRKKLEKAEKERRG 138 (546)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666665544433
No 204
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=85.63 E-value=2 Score=39.51 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=27.0
Q ss_pred CCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 638 g~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
..+.||||.|---+++..=.++.. . ..+.|+|||=|.+
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~hA---~-~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILHA---R-TMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHHH---H-hCCCcEEeecccc
Confidence 468899999987777763333321 1 2479999999987
No 205
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=85.53 E-value=24 Score=33.14 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=26.9
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~ 286 (720)
..++..+-+.-..+.++++..+..+..+......+...
T Consensus 32 ~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~ 69 (213)
T cd00176 32 LESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE 69 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 34566666677778888888888888887777665543
No 206
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.35 E-value=8 Score=36.73 Aligned_cols=56 Identities=38% Similarity=0.457 Sum_probs=35.1
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh-hHHHHHHhhhhhHHhhHHHHHhhh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDAD-ERVVMLEMERSSLESSLKELESKL 304 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~e~~~ 304 (720)
.++|..+|+|.-.++..|..|+++......+= ..-...+.++..|+..+.+++.++
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777655432 222334444444555555555443
No 207
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.32 E-value=44 Score=37.59 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=19.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNS 275 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~ 275 (720)
.+..+++.++..-..++..+..|++++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666776667777777777666654
No 208
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.29 E-value=22 Score=38.81 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=36.2
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL-YEK 327 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (720)
..||+.+|++=..+..+|+..+.++.+ ++.+.+.+++.+.+...+....++.+.++....-+|+.| -..
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e----------~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEE----------LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345555554444444444444444332 233444444444444444444444444444445555555 344
Q ss_pred HHHHHHHHH
Q 005005 328 VENLQGLLA 336 (720)
Q Consensus 328 ~~~l~~~l~ 336 (720)
|.+|++.+.
T Consensus 273 i~~Lk~~~~ 281 (312)
T smart00787 273 IEKLKEQLK 281 (312)
T ss_pred HHHHHHHHH
Confidence 444444443
No 209
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=85.26 E-value=47 Score=33.92 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=55.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhh-hhchHHHHHHHHH---HHHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHHH
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLY-QESVKEFQDTL 422 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 422 (720)
+++..|.+.+.++++.+.++..... +-..+|+++.+.- +++++...+.++....+.|..-+.-+ ..-+.+|..+|
T Consensus 113 ~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l 192 (216)
T cd07627 113 LWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSV 192 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777666665431 2235666655544 56788888888888888888877766 56788888887
Q ss_pred HhhHHh
Q 005005 423 HSLKEE 428 (720)
Q Consensus 423 ~~~~~~ 428 (720)
....+-
T Consensus 193 ~~~~e~ 198 (216)
T cd07627 193 EIYLES 198 (216)
T ss_pred HHHHHH
Confidence 776543
No 210
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.15 E-value=20 Score=42.28 Aligned_cols=41 Identities=41% Similarity=0.474 Sum_probs=25.3
Q ss_pred cchhhhhhHHHHHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHH
Q 005005 316 TLKVECKDLYEKVENLQGLLAK-------ATKQADQAISVLQQNQELR 356 (720)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~~~l~ 356 (720)
.|+.|.+.|-|.+|-|...++. |.+|-+.|...|++-.+-+
T Consensus 198 glkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk 245 (772)
T KOG0999|consen 198 GLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQK 245 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555544443 4568888888888766533
No 211
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.92 E-value=53 Score=34.25 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=24.5
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhh
Q 005005 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSL 425 (720)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (720)
.|+.|...+.||-...+-++..+..+|..|.+.
T Consensus 141 AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 141 AEEKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456666788888888888888888888776653
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.19 E-value=1.4e+02 Score=38.65 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=56.9
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCccc
Q 005005 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (720)
Q Consensus 166 ~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (720)
.+.++++.++..++..+..+..++.-+ ....+.++.+++.++.++..-. .+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~le~~~~~l~~~~~~l~------------------------~~~a 328 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEEREL---DARTEALEREADALRTRLEALQ------------------------GSPA 328 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc------------------------CCHH
Confidence 344555666666666666655554322 2234566777777777776531 2223
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 005005 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQ 308 (720)
Q Consensus 246 ~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~ 308 (720)
....++++.++.+...+..++.....++.. -..+...++.+...++..+.+.+..+..+.
T Consensus 329 ~~~~~eL~el~~ql~~~~~~a~~~~~~~~~---a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~ 388 (1353)
T TIGR02680 329 YQDAEELERARADAEALQAAAADARQAIRE---AESRLEEERRRLDEEAGRLDDAERELRAAR 388 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777655555555544444322 233333344443334444444444433333
No 213
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.13 E-value=46 Score=34.15 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHh-HhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005005 352 NQELRKKVDKLEESLD-EANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (720)
Q Consensus 352 ~~~l~~~~d~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (720)
.++|.++++-...+.. ..+.++-....++.-+..|+..+..|..++.+-+.
T Consensus 141 i~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 141 IQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555554444443 23344444555666666677777777766665544
No 214
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=84.04 E-value=15 Score=39.91 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=21.4
Q ss_pred CCHHHHH---HHHHHHHHHCCCeEEEEecCCC
Q 005005 528 GGLGDVV---AGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 528 GGLGDVV---gsLPKALa~lGhEV~VILPkY~ 556 (720)
||-|=|+ =++.++|.+.||+|..+.-.++
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 5555554 4677889999999999975553
No 215
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=83.92 E-value=3.8 Score=43.33 Aligned_cols=51 Identities=25% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEC-chhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 621 RRFSFFSRAALELLLQAGKQPDIIHCH-DWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 621 eRFafFSRAALElL~klg~kPDIIHcH-DWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
...+.......++++ .++|||||+| ||.+++++.+... + .++|++.+-+.+
T Consensus 69 ~~~~~~~~~l~~~l~--~~~pDiv~~~gd~~~~la~a~aa~-~-----~~ipv~h~~~g~ 120 (365)
T TIGR00236 69 EITSNMLEGLEELLL--EEKPDIVLVQGDTTTTLAGALAAF-Y-----LQIPVGHVEAGL 120 (365)
T ss_pred HHHHHHHHHHHHHHH--HcCCCEEEEeCCchHHHHHHHHHH-H-----hCCCEEEEeCCC
Confidence 333333344444454 4689999999 8988886433322 1 368987654444
No 216
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.56 E-value=21 Score=45.29 Aligned_cols=160 Identities=21% Similarity=0.284 Sum_probs=79.9
Q ss_pred HhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc-------ccchhhhh----hHHHHHHHHHHHHHHHhh
Q 005005 272 ELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL-------STLKVECK----DLYEKVENLQGLLAKATK 340 (720)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~-------~~~~~~~~----~~~~~~~~l~~~l~~~~~ 340 (720)
...+.++.++++...+.++..|+..+++++..+..+|.-...+ ..++.+-- +.-.++++.+.|.-..++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 3455666677777777777777777777777776665432221 11111100 111222223333333333
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHhH---hhh----------------------hhhchHHHHHHHHHHHHHHHHHHH
Q 005005 341 QADQAISVLQQNQELRKKVDKLEESLDE---ANI----------------------YKLSSEKMQQYNELMQQKMKLLEE 395 (720)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~d~l~~~l~~---~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (720)
-..+--..+.++.+++++..-|+++... .+. -+-.-.-++.-++-..-.++.+++
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 3334444555666777777766665211 000 000111122223333333444455
Q ss_pred HHhhchhhHHHHHHH------HHHHHHHHHHHHHhhHHhhhhh
Q 005005 396 RLQRSDEEIHSYVQL------YQESVKEFQDTLHSLKEESKKR 432 (720)
Q Consensus 396 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~ 432 (720)
+.+...|+.+.... |.-.++..|+.+..+..|.++.
T Consensus 652 -l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 652 -LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655 5566666777777777777663
No 217
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.39 E-value=29 Score=35.09 Aligned_cols=101 Identities=23% Similarity=0.380 Sum_probs=63.3
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---------HHHhhhhHHHHHHHHH
Q 005005 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA---------ISVLQQNQELRKKVDK 361 (720)
Q Consensus 291 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---------~~~~~~~~~l~~~~d~ 361 (720)
..|+..|+|||..+..+...+...-..+.. +-.+++.++....+-.++|..| ...|.+-.+++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~---le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKR---LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999988888887766653 4555555655555555555555 3344444555555555
Q ss_pred HHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 362 LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 362 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
|+..+.. .....+.|...+..++.++...-.+-
T Consensus 103 l~~~~~~----------~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 103 LEQQLDQ----------AEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 33445566666677776666544433
No 218
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.08 E-value=0.37 Score=58.29 Aligned_cols=147 Identities=25% Similarity=0.416 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh----ccccch
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVA----KLSTLK 318 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~----~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~----~~~~~~ 318 (720)
.+...+..++.+|..|.++|.-|...+++ |.+-+.....||.|..-|...|.|+|..+.....-+. .|+.++
T Consensus 423 e~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r 502 (859)
T PF01576_consen 423 ELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLR 502 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888999999999888877765 3445666666666666666666666666555433322 233333
Q ss_pred hhh-h--------------hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHH
Q 005005 319 VEC-K--------------DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN 383 (720)
Q Consensus 319 ~~~-~--------------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~ 383 (720)
.+. + .....++.|+.-|+.-.+.- ..++.....|...++.|+..|+.+|-.+ ...++..
T Consensus 503 ~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r---~~~~r~kkKLE~~l~eLe~~ld~~n~~~---~e~~k~~ 576 (859)
T PF01576_consen 503 QEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKER---AEALREKKKLESDLNELEIQLDHANRAN---EEAQKQL 576 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHhH---HHHHHHH
Confidence 332 1 22345556666665433321 2245666778888888888888777332 2344555
Q ss_pred HHHHHHHHHHHHHHhh
Q 005005 384 ELMQQKMKLLEERLQR 399 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~ 399 (720)
..++..+|.+...+..
T Consensus 577 kk~q~qlkdlq~~lee 592 (859)
T PF01576_consen 577 KKLQAQLKDLQRELEE 592 (859)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhhhhHH
Confidence 5677777765544443
No 219
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.01 E-value=70 Score=35.36 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHhHh-hhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 005005 352 NQELRKKVDKLEESLDEA-NIYKLSSEKMQQYNELMQQKMKLLEERL 397 (720)
Q Consensus 352 ~~~l~~~~d~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (720)
-++|+.++..++..|.+. ..|.-..-+++. ++.++..++..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~----l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKR----AQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH----HHHHHHHHHHHH
Confidence 357888999999888885 457777776654 444445555544
No 220
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=82.94 E-value=6.9 Score=41.00 Aligned_cols=141 Identities=27% Similarity=0.316 Sum_probs=87.5
Q ss_pred CccccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHH
Q 005005 125 GEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLED 204 (720)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~ 204 (720)
..++++-|-|-+++.|.++ +| -+++.+.+-+.-|+..+. .+| -..-
T Consensus 56 ~~Gf~~kQAETIt~aiT~v------~n----dsl~~vsk~~vtkaqq~~----v~~--------------------QQ~~ 101 (220)
T KOG3156|consen 56 AAGFDSKQAETITSAITTV------LN----DSLETVSKELVTKAQQEK----VSY--------------------QQKV 101 (220)
T ss_pred HcCCChhhHHHHHHHHHHH------Hc----ccHHHHHHHHHHHHHHHH----HHH--------------------HHHH
Confidence 4567778888888888763 33 357777776665554432 111 2345
Q ss_pred HHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHH-
Q 005005 205 QLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV- 283 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~- 283 (720)
.+-|+|.+|-+ ..-.||..|+.||-.||+||+.+|+.|.+--.+.-.=
T Consensus 102 ~f~kiRsel~S-------------------------------~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~ 150 (220)
T KOG3156|consen 102 DFAKIRSELVS-------------------------------IERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEF 150 (220)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 56788888876 3356899999999999999999999997654332211
Q ss_pred ---HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 284 ---VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 284 ---~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
.-|||=|--=+++-.+|--+ +++ ..+=..|.||..+++.+.-|.-|.
T Consensus 151 rLdLNLEkgr~~d~~~~~~l~~~---------e~s------~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 151 RLDLNLEKGRIKDESSSHDLQIK---------EIS------TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred eeecchhhccccchhhhcchhHh---------HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12343332222222222221 111 123367888888888887776664
No 221
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.88 E-value=25 Score=40.17 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=41.4
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 005005 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (720)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l 182 (720)
.-++.-|-.+|++.|+-|--+..++.+.-.++.++-+..+++-..++.|+..-
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888887777777777777654
No 222
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.80 E-value=43 Score=41.00 Aligned_cols=105 Identities=26% Similarity=0.339 Sum_probs=64.5
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 324 (720)
+..+..+|..++.||..|.+.++ +-++-|..|.++++..++.+.+|-.+|...+-+. ++||||---+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~----------~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken---~~Lkye~~~~ 160 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQ----------EKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN---SSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44668888999999988877653 3345566666677777777777766666555443 4566765555
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 005005 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 365 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~ 365 (720)
.+.+|---.=.+--++-||-| --|+.+=-+||-|||+-
T Consensus 161 ~keleir~~E~~~~~~~ae~a---~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAA---SKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 555443322222223333333 45677777888888864
No 223
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.49 E-value=56 Score=34.89 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=14.6
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 005005 283 VVMLEMERSSLESSLKELESKLSISQEDV 311 (720)
Q Consensus 283 ~~~~~~e~~~l~~~~~~~e~~~~~~~~~~ 311 (720)
+..++++-+.+++-|+++..|...++...
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444444
No 224
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.80 E-value=70 Score=33.30 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=82.5
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 341 (720)
+++.|..|...|. +++-.|+-...+=.+.++..+..|..++..--.+ +...++.-+..|-+++..|...+..-..+
T Consensus 39 i~e~i~~Le~~l~--~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 39 IKEQIQKLEKALE--AEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554443 3455555555555556677777666555432222 44455555666777777777777664444
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 005005 342 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (720)
-.+.+ -..++.|.++|..|.+.++.-.......+. .+ ++.|++-.......|..-.......+.++...
T Consensus 115 r~~~i--e~~~~~l~~~l~~l~~~~~~Er~~R~erE~------~i---~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 115 RPQDI--EELNQELVRELNELQEAFENERNEREEREE------NI---LKRLEEEENRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 345667888888888877766555444331 11 23333333333344444444444555555555
Q ss_pred HHhhHHhh
Q 005005 422 LHSLKEES 429 (720)
Q Consensus 422 l~~~~~~~ 429 (720)
|+.++...
T Consensus 184 le~~~~~~ 191 (247)
T PF06705_consen 184 LEEVKRRR 191 (247)
T ss_pred HHHHHHHH
Confidence 55555433
No 225
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=81.40 E-value=2.7 Score=46.72 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=33.2
Q ss_pred eEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 513 KILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|.+|+==.+||+ +||...-|..|-+.+-+.-..|..|.+.
T Consensus 1 ~v~l~~egtyp~~-~ggvs~w~~~~i~~~p~~~f~~~~~~~~ 41 (475)
T cd03813 1 DVCLVLEGTYPYV-RGGVSSWVHQLITGLPEHTFAVVFIGAD 41 (475)
T ss_pred CeEEEEecCCCCc-CCchhHHHHHHHhhCCCceEEEEEEecC
Confidence 3666653369997 8999999999999999888888888664
No 226
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.16 E-value=33 Score=37.14 Aligned_cols=135 Identities=21% Similarity=0.313 Sum_probs=79.1
Q ss_pred ccchhHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHH
Q 005005 130 TSQLDNLISMIRNAEK-NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQK 208 (720)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 208 (720)
+.=|+=|.+.|+-..+ ++.=|...++ ..+..++...|..+=++.=|.++|-|.-...+...+ .+..+.+-+.
T Consensus 125 S~yLe~Lc~IIqeLq~t~~~~LS~~dl---~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~----~~~~e~eke~ 197 (269)
T PF05278_consen 125 SYYLECLCDIIQELQSTPLKELSESDL---KEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ----HETREEEKEE 197 (269)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhhHHHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3446777788887766 4676777664 456677888888888888888888774221111111 1122222222
Q ss_pred HHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHh
Q 005005 209 LQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEM 288 (720)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~ 288 (720)
.+..|. ..-.|++.+.+|=......+..++. .++++-.|+..|+.
T Consensus 198 ~~r~l~--------------------------------~~~~ELe~~~EeL~~~Eke~~e~~~---~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 198 KDRKLE--------------------------------LKKEELEELEEELKQKEKEVKEIKE---RITEMKGRLGELEM 242 (269)
T ss_pred HHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 222221 2234444444443333333333433 34677888999999
Q ss_pred hhhhHHhhHHHHHhhhhc
Q 005005 289 ERSSLESSLKELESKLSI 306 (720)
Q Consensus 289 e~~~l~~~~~~~e~~~~~ 306 (720)
|++-|...+..+.||.--
T Consensus 243 ~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 243 ESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887776543
No 227
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.87 E-value=1.3e+02 Score=35.86 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=14.8
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~ 275 (720)
.+++..+..|+--|+.++..++.+++.
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566555555555543
No 228
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=80.87 E-value=1.5e+02 Score=36.36 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=54.2
Q ss_pred cCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhh--hhhhh--hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 005005 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS--VKDAD--ERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (720)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~--~~~~~--~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~ 315 (720)
.+-..||.|-..|+.+.+-|...-.-++.||.+|.. +++++ ...-.|.-|...+-....++-..+...|+|+....
T Consensus 447 ~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k 526 (786)
T PF05483_consen 447 IREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK 526 (786)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456679999999999999999888899999999985 44433 34445555655555555566556666788776543
No 229
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.26 E-value=1.7e+02 Score=36.84 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=31.6
Q ss_pred HHH-HHHHHHHH--HHHHhcCCCCcEEEECchhhhhHHHHHHHhhCc---C-CCCCCCEEEEecCCCccccC
Q 005005 621 RRF-SFFSRAAL--ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVP---K-GLNSARVCFTCHNFEYQGTA 685 (720)
Q Consensus 621 eRF-afFSRAAL--ElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~---~-gf~~iptVFTIHNLaYQGiF 685 (720)
++| +.+++|.. + +...+..||++=+.+--+++= |..+..... . .-.+..++++-|.....-.+
T Consensus 954 e~~~~~la~al~~s~-~~s~~~~~~~l~lDEp~~~lD-~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 954 ESFLVSLALALALSD-LVSHKTRIDSLFLDEGFGTLD-SETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred HHHHHHHHHHHHhhh-hhhcCCCCCEEEEeCCCCcCC-HHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 444 34555543 2 223455799998887665553 333221110 0 01245678888854443333
No 230
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.06 E-value=56 Score=41.20 Aligned_cols=122 Identities=21% Similarity=0.298 Sum_probs=57.8
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH
Q 005005 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK 358 (720)
Q Consensus 279 ~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 358 (720)
..++....|+|+-.....|++||- ++++++..|.. -.+.+.-.+..+.+|..+
T Consensus 432 see~y~~~e~e~~~~~~~ieele~------------------------el~~~~~~l~~---~~e~~~~~~~~~~~l~~~ 484 (1041)
T KOG0243|consen 432 SEERYTQEEKEKKEMAEQIEELEE------------------------ELENLEKQLKD---LTELYMNQLEIKELLKEE 484 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHH---HHHHHhhHHHHHHHHHHH
Confidence 456666666676666666666554 34444444333 222333355556666666
Q ss_pred HHHHHHHHhHhhhhhhch-HHHHHHHHH------HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 359 VDKLEESLDEANIYKLSS-EKMQQYNEL------MQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 359 ~d~l~~~l~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
.+++++-|..-+-.=.+- +.+++.+.. .-++.+..|+-++.-..+++.+++--+..+.-|..-|+....
T Consensus 485 ~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 485 KEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 666666655444322221 122332222 122333344444444555555555555555544444444433
No 231
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=79.68 E-value=9.1 Score=46.12 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=29.6
Q ss_pred ccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 520 EMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 520 E~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
|.-|-.-.||||..++.+-..|+.+|.....+-=+|.+-
T Consensus 16 E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG 54 (713)
T PF00343_consen 16 EPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYG 54 (713)
T ss_dssp S--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCE
T ss_pred CcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCC
Confidence 445666789999999999999999999999988777653
No 232
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.31 E-value=2.1e+02 Score=37.21 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=12.0
Q ss_pred hhHHHHHhhhhcchhhhhccccc
Q 005005 295 SSLKELESKLSISQEDVAKLSTL 317 (720)
Q Consensus 295 ~~~~~~e~~~~~~~~~~~~~~~~ 317 (720)
++|...|.-|.....|++...-|
T Consensus 1525 ~sL~nVd~IL~~T~~di~ra~~L 1547 (1758)
T KOG0994|consen 1525 ASLPNVDAILSRTKGDIARAENL 1547 (1758)
T ss_pred HhcccHHHHHHhhhhhHHHHHHH
Confidence 45555565555555555443333
No 233
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.05 E-value=1.7e+02 Score=35.99 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=20.0
Q ss_pred HHHHHH-HHHHHHHHHHHhhhhhhHHHh
Q 005005 154 RVQALE-DLHKILQEKEALQGEINALEM 180 (720)
Q Consensus 154 r~~a~~-~~~~~~~ek~~lq~~~~~l~~ 180 (720)
|+-+|| .++-..+|.++|..+++-|..
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666776 477778888899888885543
No 234
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.96 E-value=49 Score=40.24 Aligned_cols=108 Identities=25% Similarity=0.327 Sum_probs=68.6
Q ss_pred HHhhhhhhHHHhhh----hchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcc
Q 005005 169 EALQGEINALEMRL----AETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (720)
Q Consensus 169 ~~lq~~~~~l~~~l----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (720)
.+||.++..+..-+ +|.|-=..+...-+-..+.+|.|...||.||..--.-|-
T Consensus 37 ~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~----------------------- 93 (717)
T PF09730_consen 37 LELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREA----------------------- 93 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 34444444433333 333333445555566677888888888888876433321
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e 301 (720)
.+-.+++.|.+||.+|...+-.||+-=.++-..---+..|+.|-..|.+.+.|+.
T Consensus 94 --rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 94 --RLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred --HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999988888777666555556666666666666655443
No 235
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.91 E-value=4.9 Score=39.31 Aligned_cols=61 Identities=34% Similarity=0.476 Sum_probs=41.8
Q ss_pred CcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh------hhHHHHHHhhhhhHHhhHHHHHh
Q 005005 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA------DERVVMLEMERSSLESSLKELES 302 (720)
Q Consensus 242 ~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~------~~~~~~~~~e~~~l~~~~~~~e~ 302 (720)
+..+..+..++..|++|...|+.++..|+++|...... ...+..|+.|...|++.|..|.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888999999999988888888876533 34455555555555555555544
No 236
>PRK11519 tyrosine kinase; Provisional
Probab=78.67 E-value=1.6e+02 Score=35.48 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEE
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VI 551 (720)
.+-||++|++-.. --|=-.++..|+.+|+..|+.|-+|
T Consensus 524 ~~~kvi~vts~~~----geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 524 AQNNVLMMTGVSP----SIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred CCceEEEEECCCC----CCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3558888887421 1244568999999999999999998
No 237
>PF13514 AAA_27: AAA domain
Probab=78.30 E-value=2e+02 Score=36.39 Aligned_cols=44 Identities=25% Similarity=0.365 Sum_probs=37.6
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
..++|+.|...+..+......+-.++.|...+...+..+..+|-
T Consensus 284 ~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 284 HAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888888888888888899999888888888888887
No 238
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.06 E-value=41 Score=38.90 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=41.3
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 005005 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMK 391 (720)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (720)
++|...+.....+-.++.+|+..+..+......+..-+ +.++.|++++...|.+-. .-..+|++--+..+.|+|
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~---~q~q~k~~k~~kel~~~~---E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL---QQLQTKLKKCQKELKEER---EENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHH
Confidence 33444444444444444444444333322222222233 445556666665554432 233455555567778888
Q ss_pred HHHHHHhhc
Q 005005 392 LLEERLQRS 400 (720)
Q Consensus 392 ~~~~~~~~~ 400 (720)
.+|+|..+.
T Consensus 421 ~~~e~~~~~ 429 (493)
T KOG0804|consen 421 ELEEREKEA 429 (493)
T ss_pred HHHHHHHHH
Confidence 888877543
No 239
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.86 E-value=1.1e+02 Score=39.04 Aligned_cols=172 Identities=20% Similarity=0.292 Sum_probs=96.6
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc-----
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK----- 313 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~----~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~----- 313 (720)
+.+|.|-..+..++.+=-.+|.++.-++.++.. ..+...++..++++-...+..+++|+.+.-..+..|-+
T Consensus 683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ 762 (1141)
T KOG0018|consen 683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRR 762 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566666666666655566666655555533 33455566677777777778888888777776665532
Q ss_pred --cccchhhhhhHH----HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHH
Q 005005 314 --LSTLKVECKDLY----EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (720)
Q Consensus 314 --~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~ 387 (720)
+.-..||=..+. .|--.++..++++.+|-| +..| +|.+++|.+++.+++..... .+.+++-.+.+-
T Consensus 763 igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~----fe~~-~d~~~~ve~~~~~v~~~~~~---~~~~~~~e~~~~ 834 (1141)
T KOG0018|consen 763 IGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD----FEKQ-KDTQRRVERWERSVEDLEKE---IEGLKKDEEAAE 834 (1141)
T ss_pred cCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----heec-ccHHHHHHHHHHHHHHHHHh---HHhhHHHHHHHH
Confidence 112233322332 233334455555555543 4445 99999999999998876643 444555555555
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 005005 388 QKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
..+...|++=.+. ++-+.-|+..+.+....+..+.
T Consensus 835 k~i~e~~~~e~k~----k~~~~~~~~e~~e~~k~~~~~~ 869 (1141)
T KOG0018|consen 835 KIIAEIEELEKKN----KSKFEKKEDEINEVKKILRRLV 869 (1141)
T ss_pred HHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555553322211 4444445555544444444433
No 240
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=77.74 E-value=90 Score=32.18 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=62.6
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHH---HHHHHHHHHHHhhchhhHHHHHHHH-H
Q 005005 337 KATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM---QQKMKLLEERLQRSDEEIHSYVQLY-Q 412 (720)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~ 412 (720)
.+..--.+=.-+++..|.++..+++.++.++.-.... .++|+++.+.-+ +.++.....++...-.-|..-+.-+ .
T Consensus 110 svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~-~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~ 188 (224)
T cd07623 110 AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG-RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEK 188 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444577888888888888888776654432 356776555544 6777788888888888777777666 5
Q ss_pred HHHHHHHHHHHhhHHhhhh
Q 005005 413 ESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 413 ~~~~~~~~~l~~~~~~~~~ 431 (720)
+-|.+|..+|...-+..-.
T Consensus 189 erv~dfk~~l~~~le~~i~ 207 (224)
T cd07623 189 NRVKDFKDIIIKYLESLLN 207 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888887776655443
No 241
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=77.70 E-value=61 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=23.7
Q ss_pred HHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHH
Q 005005 359 VDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (720)
Q Consensus 359 ~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (720)
+++|+.+|.....-.---+.|-++|+++-+|-|..=
T Consensus 1287 l~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP 1322 (1439)
T PF12252_consen 1287 LDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYP 1322 (1439)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 566777777666555556667778887766655443
No 242
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.68 E-value=5.6 Score=41.01 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=13.0
Q ss_pred HHhhhhhhHHHhhhhchhhh
Q 005005 169 EALQGEINALEMRLAETDAR 188 (720)
Q Consensus 169 ~~lq~~~~~l~~~l~e~~~~ 188 (720)
.+||.++..|+.+|++.+..
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 45666777777777776544
No 243
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.62 E-value=25 Score=34.59 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=22.0
Q ss_pred hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc
Q 005005 275 SVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK 313 (720)
Q Consensus 275 ~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~ 313 (720)
++.+...++..+++|...++..+.++++.+...+.+...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666655555444433
No 244
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.50 E-value=44 Score=40.94 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHH----HHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhh
Q 005005 380 QQYNELMQQKMKLLEERLQRSDEEIH----SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDG 455 (720)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~ 455 (720)
++..+.||.++...+.||+++.++|- +|..-+.....|.+.-|+.+-+--.+ +++--.+-=|+|--+.+=.++.
T Consensus 775 ~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~r--L~~L~~D~Lpef~arF~~llN~ 852 (1104)
T COG4913 775 IEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLAR--LQTLTEDALPEFLARFQELLNR 852 (1104)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHH--HHhhhhhhHHHHHHHHHHHhhh
Confidence 56778899999999999999999874 44444455555555555554443333 3332222224554444443344
Q ss_pred h
Q 005005 456 W 456 (720)
Q Consensus 456 ~ 456 (720)
|
T Consensus 853 ~ 853 (1104)
T COG4913 853 S 853 (1104)
T ss_pred c
Confidence 4
No 245
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.46 E-value=91 Score=32.85 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=56.4
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 005005 290 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (720)
Q Consensus 290 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~ 367 (720)
.-.|+-.++|+++.|..+-.-+.++-..+.. +..+++.++...++-.++|..| +...|.+|=+++=.=+.+|+
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~---~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQ---LERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHH
Confidence 3568889999999999999999988888774 8889999999998888888888 55566666555544444443
No 246
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=77.26 E-value=83 Score=31.53 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=52.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhh-hhchHHHHH---HHHHHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHH
Q 005005 347 SVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQ-ESVKEFQDT 421 (720)
Q Consensus 347 ~~~~~~~~l~~~~d~l~~~l~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 421 (720)
..+.+.+.+.+.+++.++.++.+... +-+.+++++ ..+.+++++..++.++......+..-++-|. +-+++|+.+
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~ 211 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777666665 334455443 3445667777777888888777777665554 456777777
Q ss_pred HHhhHH
Q 005005 422 LHSLKE 427 (720)
Q Consensus 422 l~~~~~ 427 (720)
|....+
T Consensus 212 l~~~~~ 217 (236)
T PF09325_consen 212 LEEYAE 217 (236)
T ss_pred HHHHHH
Confidence 765544
No 247
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=77.17 E-value=7.7 Score=40.34 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEECch-hhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 621 RRFSFFSRAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 621 eRFafFSRAALElL~klg~kPDIIHcHDW-HTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
.+...........+.. ++|||||+|.+ .++++ ..+.... .++|+|.+.|+.
T Consensus 71 ~~~~~~~~~l~~~l~~--~~pDvV~~~g~~~~~~~-~~~aa~~-----~~iPvv~~~~g~ 122 (363)
T cd03786 71 AQTAGLLIGLEAVLLE--EKPDLVLVLGDTNETLA-AALAAFK-----LGIPVAHVEAGL 122 (363)
T ss_pred HHHHHHHHHHHHHHHH--hCCCEEEEeCCchHHHH-HHHHHHH-----cCCCEEEEeccc
Confidence 3333344455555553 48999999964 44443 3332221 368998877764
No 248
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.12 E-value=1.5e+02 Score=34.36 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 005005 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY 372 (720)
Q Consensus 293 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~ 372 (720)
..++..+|+.|-.+-++-|.-+.+++-|-+++..++.....-+ +.-+.++..|.+|..|.++....+.-++.+.+.
T Consensus 260 ~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~----d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~ 335 (446)
T KOG4438|consen 260 EKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEY----DSLETKVVELKEILELEDQIELNQLELEKLKMF 335 (446)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888777777777777777777666665555443322 345667778999999998887766666665544
Q ss_pred h
Q 005005 373 K 373 (720)
Q Consensus 373 ~ 373 (720)
.
T Consensus 336 e 336 (446)
T KOG4438|consen 336 E 336 (446)
T ss_pred H
Confidence 3
No 249
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=77.07 E-value=2.3e+02 Score=36.47 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=35.4
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 311 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~ 311 (720)
....|..|-..++..+..++.++- ..+.+..-+.+.|..+...+..+|.++..-|+-+
T Consensus 174 ~~~~lqae~~~l~~~~~~l~~~l~---s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~i 231 (1109)
T PRK10929 174 QLTALQAESAALKALVDELELAQL---SANNRQELARLRSELAKKRSQQLDAYLQALRNQL 231 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777765 3445555555566555555555555554444433
No 250
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=77.00 E-value=8 Score=39.98 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=34.0
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc-chhhhhccccchhhhhhH
Q 005005 273 LNSVKDADERVVMLEMERSSLESSLKELESKLSI-SQEDVAKLSTLKVECKDL 324 (720)
Q Consensus 273 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~ 324 (720)
.+....+|--.+.|++|-+.|++.|...|..-.. ...+-++...+|.|...|
T Consensus 88 fS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL 140 (195)
T PF12761_consen 88 FSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL 140 (195)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH
Confidence 3445677778888998888888888887777666 333344455555553333
No 251
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.71 E-value=1.7e+02 Score=34.86 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 005005 150 LNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (720)
Q Consensus 150 l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~ 185 (720)
.=++=.++-.+|+++.....+...+++-|+-.+.|-
T Consensus 162 ~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~El 197 (557)
T COG0497 162 AYQAWKQARRELEDLQEKERERAQRADLLQFQLEEL 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555555556666666555554
No 252
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.62 E-value=38 Score=37.46 Aligned_cols=123 Identities=21% Similarity=0.312 Sum_probs=77.7
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHH--hhhhhHHhhHHHHHhhhhcchhhhhccc----cc
Q 005005 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLE--MERSSLESSLKELESKLSISQEDVAKLS----TL 317 (720)
Q Consensus 244 ~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~--~e~~~l~~~~~~~e~~~~~~~~~~~~~~----~~ 317 (720)
....|..|+..||..=..++-||..|+..+....-.++.+..-. .||+.|=..|..+.++...-+.|+--+- -+
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888888877788888888888777554443332222 6666666666666666655555554332 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhHH----HHhhhhHHHHHHHHHHHHHH
Q 005005 318 KVECKDLYEKVENLQGLLAKATKQADQAI----SVLQQNQELRKKVDKLEESL 366 (720)
Q Consensus 318 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~l~~~~d~l~~~l 366 (720)
..|=-..-.||..|..-|--+.+-.+.-| .++-.|.-|+.++-.+++..
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567899988877766655544332 25667888888777776543
No 253
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.27 E-value=1.5e+02 Score=34.50 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=26.8
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh---hHHHHHHhhhhhHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD---ERVVMLEMERSSLE 294 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~---~~~~~~~~e~~~l~ 294 (720)
.+..++..++++...+...++.++.++.++...+ .--..|+.|+..|.
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~ 222 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLS 222 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHh
Confidence 3455666666666666667777766665554433 22334555555543
No 254
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=76.19 E-value=41 Score=37.10 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||+|-+-+++.++|.+.||+|+++-+.
T Consensus 104 iGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 104 VGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred EcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4899999999999999999999999764
No 255
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=75.73 E-value=37 Score=36.04 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=43.7
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc---------hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 005005 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL---------KVECKDLYEKVENLQGLLAKATKQADQAISV 348 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 348 (720)
.....+..+..+++.|+..++.++.++..++.++..=-.- --.|+...++++..+.-|+.+.++.+.++.-
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAA 211 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666677777777777777777777666554322111 1456666777777776666655555544444
Q ss_pred hh
Q 005005 349 LQ 350 (720)
Q Consensus 349 ~~ 350 (720)
++
T Consensus 212 l~ 213 (301)
T PF14362_consen 212 LD 213 (301)
T ss_pred HH
Confidence 43
No 256
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.24 E-value=25 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=6.8
Q ss_pred HhhhhhhhhhhcchhHHH
Q 005005 250 KELDSLKTENLSLKNDIK 267 (720)
Q Consensus 250 ~~~~~~~~en~~~k~~~~ 267 (720)
+|++.+.+....+...+.
T Consensus 95 ~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 95 EELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 257
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.95 E-value=2e+02 Score=35.91 Aligned_cols=69 Identities=32% Similarity=0.398 Sum_probs=43.3
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh------------------------hhhhhHHHHHHhhhhhHHhhHHHHHh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV------------------------KDADERVVMLEMERSSLESSLKELES 302 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~------------------------~~~~~~~~~~~~e~~~l~~~~~~~e~ 302 (720)
+.-+|++.++.||-.|+++-+-+-.+|..- +...+-+..+-++-+...+++.++++
T Consensus 734 t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~ 813 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQS 813 (970)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 345778888888887776655555555211 22234555566666667777778887
Q ss_pred hhhcchhhhhccc
Q 005005 303 KLSISQEDVAKLS 315 (720)
Q Consensus 303 ~~~~~~~~~~~~~ 315 (720)
++..-+++...+-
T Consensus 814 e~~~~keq~~t~~ 826 (970)
T KOG0946|consen 814 ELTQLKEQIQTLL 826 (970)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665443
No 258
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=74.44 E-value=6.5 Score=35.58 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=22.2
Q ss_pred cCCHHHHH--HHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVV--AGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVV--gsLPKALa~lGhEV~VILPk 554 (720)
.|.-|||- -+|.++|+++||+|++.+|.
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 57788885 46779999999999999874
No 259
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=74.23 E-value=53 Score=36.44 Aligned_cols=114 Identities=15% Similarity=0.029 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHHHHHHCCCe-EEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEeCCceEEecCCCCC
Q 005005 526 KVGGLGDVVAGLGKALQKKGHL-VEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHP 604 (720)
Q Consensus 526 KVGGLGDVVgsLPKALa~lGhE-V~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~vdGVpVYFID~~~P 604 (720)
-|||-=-.+-+|.++|.++|++ |.++--.++ + ... + ....|+++++|+..
T Consensus 9 GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~-~--------e~~---l---------------~~~~~~~~~~I~~~-- 59 (357)
T COG0707 9 GTGGHVFPALALAEELAKRGWEQVIVLGTGDG-L--------EAF---L---------------VKQYGIEFELIPSG-- 59 (357)
T ss_pred CCccchhHHHHHHHHHHhhCccEEEEeccccc-c--------eee---e---------------ccccCceEEEEecc--
Confidence 3777777888999999999996 444422221 1 000 0 11237778888742
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhc-CCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 605 DKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 605 e~fF~R~~IYG~~DDaeRFafFSRAALElL~kl-g~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
.+.|...+ .+......+.++..+...-+ .++||+|=+=-+..+. |+++... +.++|++..--|.
T Consensus 60 --~~~~~~~~---~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~-P~~~Aa~-----~~~iPv~ihEqn~ 124 (357)
T COG0707 60 --GLRRKGSL---KLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSG-PVGIAAK-----LLGIPVIIHEQNA 124 (357)
T ss_pred --cccccCcH---HHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCcccc-HHHHHHH-----hCCCCEEEEecCC
Confidence 22222222 24444445555555443322 5799999886666655 3555432 2458887766665
No 260
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.20 E-value=44 Score=36.63 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=29.4
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e 301 (720)
...|...++.|+.+...|..+++-+..-+. +..++...|..|...|.+...+++
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~---~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKP---KLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345556666666666666666655553322 333455555555555555555544
No 261
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.72 E-value=27 Score=41.77 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=13.5
Q ss_pred HhhhHHHHHHHHHHhhhc
Q 005005 199 VELLEDQLQKLQHELTHR 216 (720)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ 216 (720)
++.+++||..++++|...
T Consensus 269 ~~fL~~qL~~l~~~L~~a 286 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQA 286 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457788888888888763
No 262
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.47 E-value=46 Score=31.96 Aligned_cols=41 Identities=39% Similarity=0.447 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH---HHHHHHHH
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKK---VDKLEESL 366 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~---~d~l~~~l 366 (720)
+..+.....+-+.+..+.+.+- --+..+++++| +++|++.|
T Consensus 106 ~~~~~k~~kee~~klk~~~~~~--~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 106 LEAKLKQEKEELQKLKNQLQQR--KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444433333333 22456677764 56666554
No 263
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.21 E-value=12 Score=39.79 Aligned_cols=107 Identities=24% Similarity=0.364 Sum_probs=72.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhh--hhh--hchHHHHHHHHHHHHHHHHHHHHHh------------------------
Q 005005 347 SVLQQNQELRKKVDKLEESLDEAN--IYK--LSSEKMQQYNELMQQKMKLLEERLQ------------------------ 398 (720)
Q Consensus 347 ~~~~~~~~l~~~~d~l~~~l~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 398 (720)
+|-.|-.-+|.++-.||+.|.... +.+ --.+++|.=|.-|=+|++=|-.-=.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPG 162 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCCCCC
Confidence 477888889999999999886543 222 2334666667777777776643221
Q ss_pred -hchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhcccCC
Q 005005 399 -RSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLS 463 (720)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~i~ 463 (720)
.+|.|...|=+.|++++-=|.+-= +.|..++ ...||+ |.++.|.+=++||..+.+
T Consensus 163 ~~~d~e~~rY~~~YE~~l~PF~~F~---~~E~~R~-----~~~L~~--~eR~~ls~~r~vL~nr~~ 218 (248)
T PF08172_consen 163 GSSDVESNRYSSAYEESLNPFAAFR---KRERQRR-----YKRLSP--PERIFLSLTRFVLSNRTT 218 (248)
T ss_pred CCCchhHHHHHHHHHhccChHHHHh---HhhHHHH-----HhcCCh--HHHHHHHHHHHHhcChhh
Confidence 246677789999999986554411 1233332 345744 999999999999988765
No 264
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=73.08 E-value=1.2e+02 Score=31.27 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=29.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhh-hh-hhhhhHHHHHHhhhhhHHhhHHHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELN-SV-KDADERVVMLEMERSSLESSLKELE 301 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~-~~-~~~~~~~~~~~~e~~~l~~~~~~~e 301 (720)
++...++.++.|.-.+=+.=..+-..|. .| .....+...++++|..++.....+.
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~ 113 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLL 113 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777666655555555555554 22 2344555555555555544444333
No 265
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=72.59 E-value=9.8 Score=33.65 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=25.9
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~ 276 (720)
.....++.|+.||-.||=-|-||...|...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999843
No 266
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=72.28 E-value=90 Score=36.13 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=47.7
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh--------hhhH
Q 005005 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE--------CKDL 324 (720)
Q Consensus 253 ~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~--------~~~~ 324 (720)
..||-|-..|-|.++.=...|.+ .--+|+-+||.|...|..+| |=+.---....||+++-....+ ..-|
T Consensus 182 eQLRre~V~lentlEQEqEalvN--~LwKrmdkLe~ekr~Lq~Kl-Dqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l 258 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVN--SLWKRMDKLEQEKRYLQKKL-DQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKL 258 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-cCcccCCCchhhhhcCccccCchHHHHHHHHHHH
Confidence 56666666666666654444432 34567777888877777766 3333333456677766433221 1123
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005005 325 YEKVENLQGLLAKATKQA 342 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~ 342 (720)
...||.|+..|..|.++.
T Consensus 259 ~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 267
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.26 E-value=85 Score=31.04 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 005005 155 VQALEDLHKILQEKEALQGEINALEMRLAET 185 (720)
Q Consensus 155 ~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~ 185 (720)
.+..+.|..+-.++.-|+..|--||.-|..+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777776444
No 268
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.24 E-value=1.1e+02 Score=37.28 Aligned_cols=48 Identities=15% Similarity=0.394 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHH-HH---HHHHHHHHHHhhHHhhhh
Q 005005 383 NELMQQKMKLLEERLQRSDEEIHSYVQLY-QE---SVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~ 431 (720)
-..|+..+|.-||+++....|++ .++-| ++ .++.....|.-+.+.+..
T Consensus 554 ~~~lr~elk~kee~~~~~e~~~~-~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 554 LKKLRRELKQKEEQIRELESELQ-ELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777763 35556 33 355555555555555444
No 269
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.21 E-value=2.5e+02 Score=34.58 Aligned_cols=53 Identities=26% Similarity=0.415 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhh-----HhhhHHHHHHHHHHhhhc
Q 005005 163 KILQEKEALQGEINALEMRLAETDARIRVAAQEKIH-----VELLEDQLQKLQHELTHR 216 (720)
Q Consensus 163 ~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 216 (720)
-+-.|..-|+.++..|-..|.|. .|+|--++.... ...=-+|--.||.||.+.
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~-~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEA-ARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555554 344433322111 001113334678888884
No 270
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.04 E-value=1.2e+02 Score=34.32 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 005005 323 DLYEKVENLQGLLAKATKQAD 343 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~~ 343 (720)
.+...+..|+..++.+..+..
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666665554443
No 271
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.55 E-value=52 Score=33.85 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=24.6
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhh-----hhhHHHHHHhhhhhHHhhHHHHH
Q 005005 252 LDSLKTENLSLKNDIKVLKAELNSVKD-----ADERVVMLEMERSSLESSLKELE 301 (720)
Q Consensus 252 ~~~~~~en~~~k~~~~~~k~~~~~~~~-----~~~~~~~~~~e~~~l~~~~~~~e 301 (720)
|..++.+...++.+.+.|+.++.+.-+ .-..+..+..|...++..+..|.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 76 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLR 76 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666555544 33333444444444444443333
No 272
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.89 E-value=74 Score=34.57 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=38.6
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
--.+..+..+.+.|+..+.+...++..+.. ..+.....+...|--.++.-+.+++.+..+.++|
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777776666655432 2344445555566666666666666655555555
No 273
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.84 E-value=45 Score=34.69 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHH
Q 005005 356 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (720)
Q Consensus 356 ~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 388 (720)
++.|++|++.|..+++. .+||++..-+.++.
T Consensus 130 ~~Rl~~L~~~l~~~dv~--~~ek~r~vlea~~~ 160 (251)
T PF11932_consen 130 QERLARLRAMLDDADVS--LAEKFRRVLEAYQI 160 (251)
T ss_pred HHHHHHHHHhhhccCCC--HHHHHHHHHHHHHH
Confidence 45667777777777665 34566555555554
No 274
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=70.83 E-value=8.3 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEecccCCccccCCHHHHHHHHHHHHHHC-CC--eEEEE
Q 005005 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GH--LVEIV 551 (720)
Q Consensus 514 ILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-Gh--EV~VI 551 (720)
||++++. -=||---++.+|.++|.++ |. +|+|+
T Consensus 1 ilils~~-----~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 1 VLILMSD-----TGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred CEEEEEc-----CCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 4566643 1247788999999999875 54 45554
No 275
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=70.53 E-value=91 Score=34.61 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhh
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQ 351 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~ 351 (720)
.+..+++-+..+..+..++-.-+..
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~~ 252 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLNL 252 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555566666666666555544
No 276
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.40 E-value=1.6e+02 Score=37.37 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 005005 376 SEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (720)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (720)
-.++-++++++.|| ...-++..-.++.--++.|++-=-+|.+
T Consensus 407 kr~~~~~~~~~~~k---~~~~l~~~~~d~~dAy~wlrenr~~FK~ 448 (1072)
T KOG0979|consen 407 KRKLKQNSDLNRQK---RYRVLRQGSSDAYDAYQWLRENRSEFKD 448 (1072)
T ss_pred HHHHHHHhhhhhhh---HHHHhccCchHHHHHHHHHHHCHHHhcc
Confidence 34566788899998 4555666677888888888887777766
No 277
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.28 E-value=1.5e+02 Score=31.31 Aligned_cols=176 Identities=20% Similarity=0.323 Sum_probs=93.6
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHh----hHHHHHhhhhcchhhhhccc-cchh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLES----SLKELESKLSISQEDVAKLS-TLKV 319 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~----~~~~~~~~~~~~e~~~l~~----~~~~~e~~~~~~~~~~~~~~-~~~~ 319 (720)
...+......+..+..+|..|+..+++. .+-+.++..|..|..++.. .+++|.+++. ...-+ ... +-..
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~~~-e~~~~~~~ 165 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSVTV-EVDQFRSS 165 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-cccce-eecccccc
Confidence 4444445667777777888887776643 2345567777777776543 5566666553 11111 111 1111
Q ss_pred hhhhHHHHHHHHHHHHH----HHhhhhhhHHHHhhhhHHHHHHHHHHHHHH----hHhhhhhhchHHHHHHHHHHHHHHH
Q 005005 320 ECKDLYEKVENLQGLLA----KATKQADQAISVLQQNQELRKKVDKLEESL----DEANIYKLSSEKMQQYNELMQQKMK 391 (720)
Q Consensus 320 ~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (720)
+|-..+..+++-.+ +....++.. .=.+-.+++..+.+-.+.+ ++..-.+-....++.-.+-++.+..
T Consensus 166 ---dL~~~L~eiR~~ye~~~~~~~~e~e~~--y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 166 ---DLSAALREIRAQYEEIAQKNREELEEW--YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cchhhhhhHHHHHHHHHhhhhhhhhhh--cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 23333333333322 222222221 1112223333333322222 2222333344445555567778888
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
.||.+++.........++-|+..|.....-|..++.+-..
T Consensus 241 ~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 241 SLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 8888888888888888888888888888888888776554
No 278
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=70.25 E-value=1e+02 Score=34.62 Aligned_cols=124 Identities=26% Similarity=0.322 Sum_probs=79.3
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 248 ~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
+-.-+..++.+=..+.++|.....+...... ..+.+......-..|-..+.++.++-..++.-|.++ |++.
T Consensus 23 ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i------t~dI-- 94 (383)
T PF04100_consen 23 LDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI------TRDI-- 94 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--
Confidence 3344455555555555555554444433222 233444444444556666666666666666655443 3333
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHH
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM 386 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~ 386 (720)
.-||.|.+..-.+|.+|..=|-|-.-|++|+..+.. .-|+....-++-.++++
T Consensus 95 ------k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 95 ------KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKK-RQYKEIASLLQAVKELL 147 (383)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 248999999999999999999999999999998875 55776666565555555
No 279
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=70.09 E-value=4.1 Score=43.58 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=30.1
Q ss_pred EEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 514 ILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||+|.- .|+--.+|-.--+..|-++|++. |+|++++-..
T Consensus 1 iL~~~~~-~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 1 ILYLVHR-IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CeeecCC-CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 6888766 44444455588899999999775 8999998764
No 280
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=69.39 E-value=36 Score=35.54 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=42.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhh---hHHHHhh-hhHHHHHHHHHHHHHHhHhh
Q 005005 315 STLKVECKDLYEKVENLQGLLAKATKQAD---QAISVLQ-QNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~-~~~~l~~~~d~l~~~l~~~~ 370 (720)
..|+.|...|.++...++.-|.-|++-++ .++-|+. .++.+..+++.++.+|.+|.
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555666788888888888888777666 4555554 67888889999999998883
No 281
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.29 E-value=1.5e+02 Score=30.85 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhhhhH
Q 005005 326 EKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~ 345 (720)
.|+..++.-|++|..+++.+
T Consensus 120 rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444444455544444443
No 282
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=68.75 E-value=2.1e+02 Score=32.34 Aligned_cols=210 Identities=25% Similarity=0.302 Sum_probs=102.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCccc
Q 005005 143 AEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHS 222 (720)
Q Consensus 143 ~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (720)
+|+-|-.|-+--++..+..-+++.+-.-||.+ -+|..+.++-.|.-..+++.-+-|+.|=.||-.-
T Consensus 23 ~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k--------~~t~~kek~~~Q~l~kt~larsKLeelCRelQr~------ 88 (391)
T KOG1850|consen 23 VEEKIKKLAESEKDNAELKIKVLDYDKVLQVK--------DLTEKKEKRNNQILLKTELARSKLEELCRELQRA------ 88 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45555556555555555555555554444433 2455566666776666677767777666665431
Q ss_pred chhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHH
Q 005005 223 ELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLK 298 (720)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~----~~l~~~~~ 298 (720)
..++|+||+. .+| ..|-+| .-+..+|+
T Consensus 89 -----------------------------nk~~keE~~~------q~k--------------~eEerRkea~~~fqvtL~ 119 (391)
T KOG1850|consen 89 -----------------------------NKQTKEEACA------QMK--------------KEEERRKEAVEQFQVTLK 119 (391)
T ss_pred -----------------------------HHHHHHHHHH------HHH--------------HHHHHHHHHHHHHHhHHH
Confidence 1244555542 111 111111 12566777
Q ss_pred HHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH---HHhhhhHHHHHHHHH-HHHHHhHhhhhhh
Q 005005 299 ELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI---SVLQQNQELRKKVDK-LEESLDEANIYKL 374 (720)
Q Consensus 299 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~~l~~~~d~-l~~~l~~~~~~~~ 374 (720)
|++..|+.-..-..+|..--. .|-+|.-.|-..+..-.++.|+-+ -+-.|..+-+..+++ |-+-++++.+-.-
T Consensus 120 diqktla~~~~~n~klre~Ni---eL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~~e~ 196 (391)
T KOG1850|consen 120 DIQKTLAEGRSKNDKLREDNI---ELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASIQEK 196 (391)
T ss_pred HHHHHHHhcchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665554444433222 255555444444444333333221 122222222222222 2333444433221
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 005005 375 SSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (720)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (720)
.+ ..-..++-|+.. +...........++-+|.+-..|||.+|.+
T Consensus 197 ~~----glEKd~lak~~~--e~~~~~e~qlK~ql~lY~aKyeefq~tl~K 240 (391)
T KOG1850|consen 197 KS----GLEKDELAKIML--EEMKQVEGQLKEQLALYMAKYEEFQTTLAK 240 (391)
T ss_pred Hh----hhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011122222221 223345566777888999999999999875
No 283
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=68.20 E-value=1.1e+02 Score=32.32 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.8
Q ss_pred HCCCeEEEEecCCC
Q 005005 543 KKGHLVEIVLPKYD 556 (720)
Q Consensus 543 ~lGhEV~VILPkY~ 556 (720)
+.|..|+|.++.|+
T Consensus 256 ~~G~~v~v~~~~~~ 269 (334)
T TIGR00998 256 RIGQPVTIRSDLYG 269 (334)
T ss_pred CCCCEEEEEEecCC
Confidence 35788998888776
No 284
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.99 E-value=43 Score=38.80 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=31.0
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~ 281 (720)
+..+.+|+..+||+|+.|..+....+.++.+..+..+
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3356888999999999999999999999887776655
No 285
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=67.93 E-value=1.5e+02 Score=30.53 Aligned_cols=147 Identities=29% Similarity=0.362 Sum_probs=86.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhh--------------HHHhhhhchhhhhhHhhhhhh
Q 005005 136 LISMIRNAEKNILLLNEARVQALEDLHKILQ----EKEALQGEIN--------------ALEMRLAETDARIRVAAQEKI 197 (720)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~----ek~~lq~~~~--------------~l~~~l~e~~~~~~~~~~~~~ 197 (720)
+|.-++|...=|.-|-=-|.+|-+.+..+=. -|..||.+.+ .|...|+-++ .
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAE----------t 71 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAE----------T 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHH----------H
Confidence 4566777777777777777777777655433 3455553332 3334444333 3
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
+.-+||.||+-.|+-+.+.... .+.+ +-.. .+|..|.. .| -.++.
T Consensus 72 RCslLEKQLeyMRkmv~~ae~e----------------------r~~~--le~q-~~l~~e~~---~~-------~~~~~ 116 (178)
T PF14073_consen 72 RCSLLEKQLEYMRKMVESAEKE----------------------RNAV--LEQQ-VSLQRERQ---QD-------QSELQ 116 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------------hhHH--HHHH-HHHHHHhc---cc-------hhhHH
Confidence 4559999999999887763111 0000 0111 11222211 11 22334
Q ss_pred hhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 005005 278 DADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l-------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 337 (720)
..-+.+-+||+|+..| +..+++||.||..- +-..|-+.||.+.||--|+.
T Consensus 117 ~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE----------ehqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 117 AKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE----------EHQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHH
Confidence 4557788899998775 57889999887543 23456678999999887764
No 286
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=67.76 E-value=80 Score=32.45 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=65.1
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHH-HHHHHHHhHh
Q 005005 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV-DKLEESLDEA 369 (720)
Q Consensus 291 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~-d~l~~~l~~~ 369 (720)
..|+-.++||+..+..+...+..+-..+. -+-.+++.++...++-.++|..| +-..+.||-+.. .+-...-+.+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k---~~e~~~~~~~~~~~~~~~~A~~A--l~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKK---ELERRVSRLEAQVADWQEKAELA--LSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888877766554 35567777777777777777777 455666665543 2222223333
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
..++.+.+.++...+.|+.++..|+..++..
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555655555555443
No 287
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.63 E-value=93 Score=30.78 Aligned_cols=89 Identities=27% Similarity=0.343 Sum_probs=52.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhH-----------HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER-----------VVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~-----------~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~ 315 (720)
....+|...+.++.+|++-|.+|..+|..+...-+. +..|+-|-+.+.+.+++|+..|..-. ++-.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~---sEk~ 83 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR---SEKE 83 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 446778888899999999999998888665443332 22334444444444444444443332 2223
Q ss_pred cchhhhhhHHHHHHHHHHHHHHH
Q 005005 316 TLKVECKDLYEKVENLQGLLAKA 338 (720)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~ 338 (720)
.|.-+|..+.++|..|.......
T Consensus 84 ~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555666666676666555443
No 288
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.35 E-value=3.4e+02 Score=34.28 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=40.9
Q ss_pred hhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHh
Q 005005 194 QEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (720)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~ 273 (720)
+-.+++..+-.|+++|+.+|...... .+..|+++|++||+.|..++..+-.++
T Consensus 327 ~~~~~~~~lK~ql~~l~~ell~~~~~---------------------------~~~~ei~sl~~e~~~l~~~~d~~~~e~ 379 (913)
T KOG0244|consen 327 PKSFEMLKLKAQLEPLQVELLSKAGD---------------------------ELDAEINSLPFENVTLEETLDALLQEK 379 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc---------------------------cchhHHhhhhhhhhhhhhhHHHHhcch
Confidence 34567788889999999999886422 356788888888888888887776654
Q ss_pred hh
Q 005005 274 NS 275 (720)
Q Consensus 274 ~~ 275 (720)
.+
T Consensus 380 ~e 381 (913)
T KOG0244|consen 380 GE 381 (913)
T ss_pred hh
Confidence 43
No 289
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=66.87 E-value=18 Score=40.27 Aligned_cols=105 Identities=28% Similarity=0.298 Sum_probs=65.9
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (720)
..|...||.||-+||..++.||.++-.. |.|+- . +++-+++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerL----------E~e~l--~---------------------------s~V~E~v 71 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERL----------ENEML--R---------------------------SHVCEDV 71 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHH----------HHHhh--h---------------------------hhhhhHH
Confidence 3577889999999999999999987554 22211 0 1466888
Q ss_pred HHHHHHHHHHhhhhhhH-HHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 005005 329 ENLQGLLAKATKQADQA-ISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (720)
Q Consensus 329 ~~l~~~l~~~~~~~~~~-~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (720)
+..|...++++|-.+.+ ..++=|..++ ++.+.-|...--|++=|.|+.+-.| +.+++--
T Consensus 72 et~dv~~d~i~Kimnk~Re~vlfq~d~~-----------------~ld~~lLARve~LlRlK~e~~~~~f---~k~~~~l 131 (420)
T PF07407_consen 72 ETNDVIYDKIVKIMNKMRELVLFQRDDL-----------------KLDSVLLARVETLLRLKDEQPSAEF---DKDSHPL 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-----------------cccHHHHHHHHHHHHhhhhcccccc---cchhhhH
Confidence 88888888888877776 3333222221 2233334444457777888777544 4455555
Q ss_pred HHHHH
Q 005005 408 VQLYQ 412 (720)
Q Consensus 408 ~~~~~ 412 (720)
|.-|-
T Consensus 132 Ig~Yf 136 (420)
T PF07407_consen 132 IGRYF 136 (420)
T ss_pred Hhhhc
Confidence 55553
No 290
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.28 E-value=28 Score=39.49 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.8
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHh
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~ 273 (720)
..+..+.+|+..+|++...|..+++.||.++
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999854
No 291
>PRK11519 tyrosine kinase; Provisional
Probab=66.04 E-value=53 Score=39.34 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=12.6
Q ss_pred HhhhHHHHHHHHHHhhhc
Q 005005 199 VELLEDQLQKLQHELTHR 216 (720)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ 216 (720)
++.+++||++++.+|...
T Consensus 269 ~~fL~~ql~~l~~~L~~a 286 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVA 286 (719)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777777777777653
No 292
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=65.34 E-value=10 Score=36.07 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=29.1
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||+|+. -|+.+..-=+|-.-+|..+.+++||+|.++.|.-
T Consensus 1 Mki~fvm---Dpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVM---DPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEE---S-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEe---CCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 7899884 6776666667889999999999999999999964
No 293
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.09 E-value=48 Score=31.82 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=23.8
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 005005 287 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (720)
Q Consensus 287 ~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 337 (720)
+++|..+...|-.|-......++-..++..|+.+++++-.+-+++-.||+.
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444333333333333344444445555555555555555555554
No 294
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.73 E-value=1.9e+02 Score=30.37 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=34.8
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhcc-ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 005005 288 MERSSLESSLKELESKLSISQEDVAKL-STLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ 353 (720)
Q Consensus 288 ~e~~~l~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 353 (720)
.|-..-+.-|.....-|..-+.+...| ..+...-.+.-.|+..|+++|..|..+..+|-.+...|+
T Consensus 153 ~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~ 219 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQ 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343333333333333 233333334556777777777777777777766666554
No 295
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=64.61 E-value=18 Score=36.43 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=30.9
Q ss_pred CCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH---HHhcCCCCcEEEECc-hhhhh
Q 005005 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL---LLQAGKQPDIIHCHD-WQTAF 653 (720)
Q Consensus 592 dGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALEl---L~klg~kPDIIHcHD-WHTAL 653 (720)
.||.++...++. . .....|.+.-+.++-+.=+.|++.. |++.|+.||||-+|- |.-+|
T Consensus 19 ~GV~~~~y~~~~-~---~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe~L 80 (171)
T PF12000_consen 19 PGVRVVRYRPPR-G---PTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGETL 80 (171)
T ss_pred CCcEEEEeCCCC-C---CCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcchhh
Confidence 356555555321 0 1123444433445444445555544 344599999999985 55443
No 296
>PLN02501 digalactosyldiacylglycerol synthase
Probab=64.19 E-value=46 Score=40.76 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhccc-C
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKK-L 462 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~-i 462 (720)
..++..+|.+|.|-+-+ ||..-+.- .+-|+.|+.+|..+-+|..- +.+.|-=++| |+-- .|.|=-+-.|..+ |
T Consensus 175 r~~~~~~~e~e~~~~~~--~~~~~~~~-~~~~~k~k~~~k~~~~~~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 248 (794)
T PLN02501 175 RALKTRFRELEKRSESL--EIFGGFKN-SEFVEKLKSSLKAIYKEPQE-SKDVPPLDVP-ELLA-YLVRQSEPFLDQLGV 248 (794)
T ss_pred HHHHHHHHHHHhhcchH--HHhcccch-HHHHHHHHHHHHhhhcCccc-cccCCCcchH-HHHH-HHHhhccchhhhhhh
Confidence 35677888899886655 77766665 67788899988888777654 3444444443 2222 2333222222211 2
Q ss_pred ChhHHHHHHHHHHhhcCcchhhhHhhh---------hhchHH----HHHhh--------hhc-cCCC----CCCCceEEE
Q 005005 463 STSEAKLLREMVWKRNGRIRDAYMECK---------EKNEHE----AISTF--------LKL-TSSS----ISSGLHVIH 516 (720)
Q Consensus 463 ~~~~as~lr~~v~~~~~~~~~~~~~~~---------~~~~~e----~~~~~--------~~~-~~~~----k~~~MKILf 516 (720)
--+-...+++++..+.+ ..-.|-..+ .....| +..-+ .|+ ..+. ..++-+|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i 327 (794)
T PLN02501 249 RKDICDKIVESLCSKRK-NQLLLRSLSAGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHELSDGKRHVAI 327 (794)
T ss_pred hHHHHHHHHHHHHhhcc-ccccccccccccccccccccccccchhhhhhhhhccCccccCCcccCccccccccCCCeEEE
Confidence 22333556666653211 111111111 000011 11111 011 1111 145689999
Q ss_pred EecccCCccccCCHHHHHHHHHH--HHHHC-CCeEEEEecCCC
Q 005005 517 IAAEMAPVAKVGGLGDVVAGLGK--ALQKK-GHLVEIVLPKYD 556 (720)
Q Consensus 517 VSSE~aPfAKVGGLGDVVgsLPK--ALa~l-GhEV~VILPkY~ 556 (720)
||+=..|+. || ..|-.|-+ .|++. |+.|+.|+|.-.
T Consensus 328 vTtAslPWm-TG---tavnpL~rAayLa~~~~~~VtlviPWl~ 366 (794)
T PLN02501 328 VTTASLPWM-TG---TAVNPLFRAAYLAKSAKQNVTLLVPWLC 366 (794)
T ss_pred EEcccCccc-cc---ccccHHHHHHHhcccCCceEEEEEecCC
Confidence 999999995 43 34444444 35666 799999999864
No 297
>PRK10698 phage shock protein PspA; Provisional
Probab=64.00 E-value=1.8e+02 Score=30.32 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=61.2
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH-HHHHHHHHhHh
Q 005005 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK-VDKLEESLDEA 369 (720)
Q Consensus 291 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-~d~l~~~l~~~ 369 (720)
..|+-.++|||..+......+...-..+- -+-.+++.++...++-..+|..| +-..+.||-++ +.+=...-+.+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k---~~er~~~~~~~~~~~~e~kA~~A--l~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKK---QLTRRIEQAEAQQVEWQEKAELA--LRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666655544333 46667777777777766677766 44456666554 11111222333
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 005005 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (720)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (720)
.-++-..+..+...+.|++++..|+..+...-..=.
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555566666666655554444333
No 298
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=63.53 E-value=97 Score=26.65 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh------hc
Q 005005 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ------RS 400 (720)
Q Consensus 327 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 400 (720)
.+..++..++...+.-.+......+..++++++|.|-. .+.+....++.+++.++.... .+
T Consensus 15 ~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~-------------~i~~~~~~~~~~lk~l~~~~~~~~~~~~~ 81 (103)
T PF00804_consen 15 DIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTD-------------EIKQLFQKIKKRLKQLSKDNEDSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 33333333444333333333333322346666665543 234444566777777777642 33
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 005005 401 DEEIHSYVQLYQESVKEFQDTL 422 (720)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l 422 (720)
..+..-.-..|....+.|++++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 4445555556777777888754
No 299
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.37 E-value=30 Score=37.67 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 005005 323 DLYEKVENLQGLLAK 337 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~ 337 (720)
..|...-.++.-+-.
T Consensus 96 ~~~~~~n~~~~~l~~ 110 (314)
T PF04111_consen 96 EYWREYNELQLELIE 110 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456665555555444
No 300
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.12 E-value=39 Score=32.42 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=40.2
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~ 307 (720)
|+.+--|+..++.|+..|...=..+..++......-+.+....++...|+..+++|+.|...+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555556666666666666666667777777777777777776543
No 301
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=62.29 E-value=2.5 Score=51.39 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 005005 282 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 361 (720)
Q Consensus 282 ~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~ 361 (720)
....+|++|..|+..++||-.+|..+-....+-+.-.+ ..|=.+|..|+.-|+.-.. .+.+..+.+-+
T Consensus 708 ~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i--~kLE~ri~eLE~~Le~E~r----------~~~~~~k~~rk 775 (859)
T PF01576_consen 708 HNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQI--AKLEARIRELEEELESEQR----------RRAEAQKQLRK 775 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHH--HHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 45568999999999999999999998877766543333 2456788999998887333 23344444444
Q ss_pred HHHHHhHhhh----hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 005005 362 LEESLDEANI----YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (720)
Q Consensus 362 l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (720)
++..+++... .+-..+.+|...+.|+.|||.+...+...-++......-|.
T Consensus 776 ~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~R 830 (859)
T PF01576_consen 776 LERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYR 830 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5544544432 23334556777789999999999999888888777666554
No 302
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=62.08 E-value=25 Score=35.35 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh
Q 005005 152 EARVQALEDLHKILQEKEALQGEINALEMRLAETDARIR 190 (720)
Q Consensus 152 ~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~ 190 (720)
+.....-++|......+..++.++..+...|.+.++.+.
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~ 112 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS 112 (194)
T ss_dssp ---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccchhhhhHH
Confidence 344455577778888888888888888887777766544
No 303
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=61.61 E-value=15 Score=33.57 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=55.3
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+...|++.+.+.=...+.+++..-..|....-++|.-..||+|...|.+.+...|.+|..
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999988754
No 304
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.57 E-value=1.2e+02 Score=30.49 Aligned_cols=104 Identities=23% Similarity=0.362 Sum_probs=66.4
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (720)
=....|.|.-.++.+++.+|.++..+-+ .+-.|++.--.....|.+.-..|..-- +.|-+.-|+++..
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~---evD~Le~~er~aR~rL~eVS~~f~~ys---------E~dik~AYe~A~~ 88 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIE---EVDKLEKRERQARQRLAEVSRNFDRYS---------EEDIKEAYEEAHE 88 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC---------HHHHHHHHHHHHH
Confidence 3456788888899999999988776554 455566666666677777766664322 2355789999999
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh
Q 005005 331 LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (720)
Q Consensus 331 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~ 369 (720)
+|..|.-...+-.+ +-..-.+|++.+..|+..++.|
T Consensus 89 lQ~~L~~~re~E~q---Lr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 89 LQVRLAMLREREKQ---LRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99988774443332 2233444444444444444443
No 305
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=61.46 E-value=1.8e+02 Score=29.05 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcchhhhHhhhhhchHHHH
Q 005005 436 EPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAI 497 (720)
Q Consensus 436 ~~~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~~~e~~ 497 (720)
.+...+.++.|..++-.+. ++..+-...+..+++..+.-+..|+..-+-.+.|+.
T Consensus 111 ~~~~~V~~~~w~~l~~~~g-------~~~~~m~~wh~~fe~~~p~~h~~~l~~~g~~~~~~~ 165 (172)
T cd04790 111 KEQRLVTKEKWVAILKAAG-------MDEADMRRWHIEFEKMEPEAHQEFLQSLGIPEDEIE 165 (172)
T ss_pred cccccCCHHHHHHHHHHcC-------CChHHHHHHHHHHHHhCcHHHHHHHHHcCCCHHHHH
Confidence 4444577899998776444 555555899999999999999999988787777764
No 306
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=61.16 E-value=1.5e+02 Score=33.33 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=89.3
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhh-hhhh-----HhhhHHHHHHHHHHhhhcccCcccchh
Q 005005 153 ARVQALEDL-HKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIH-----VELLEDQLQKLQHELTHRGVSEHSELD 225 (720)
Q Consensus 153 ~r~~a~~~~-~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
++..+.... +-+..+.++|+.++...|++.+.-.++..+..- .+.- .--+..|+...|...++....-
T Consensus 188 ~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l----- 262 (458)
T COG3206 188 AQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARL----- 262 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344444333 344456678888888888888887777766652 1111 1112234444444444331110
Q ss_pred hhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 226 VFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
.+...-.+...........++ +.-+..||++...++.-+..+.+.+ +..-.++..++.+...++..+.+--.++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~--s~~i~~Lr~~~~~~~~~~~~l~~~~---~~~~p~~~~~~~q~~~~~~~~~~e~~~~~ 337 (458)
T COG3206 263 ASLLQLLPLGREAAALREVLE--SPTIQDLRQQYAQVRQQIADLSTEL---GAKHPQLVALEAQLAELRQQIAAELRQIL 337 (458)
T ss_pred HHHHHhhcccccchhhhHHhc--cHHHHHHHHHHHHHHHHHHHHHHhh---cccChHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 011111111000001111111 1135555555555554444444332 23334455555555555555544444433
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 005005 306 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (720)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~ 367 (720)
.+ +.-|...+--....|...+.....+...+-...++-.+|++++.-.+..++
T Consensus 338 ~~---------~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye 390 (458)
T COG3206 338 AS---------LPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYE 390 (458)
T ss_pred Hh---------chhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHH
Confidence 22 122222344444555555555555555555555566666666655554443
No 307
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.14 E-value=1.1e+02 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 005005 270 KAELNSVKDADERVVMLEMERSSLESSLKELE 301 (720)
Q Consensus 270 k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e 301 (720)
...|+.....-+++-.+|+|-+.|++.|.++.
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777666666666654
No 308
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.78 E-value=3.8e+02 Score=32.63 Aligned_cols=94 Identities=23% Similarity=0.227 Sum_probs=53.4
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccc
Q 005005 167 EKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (720)
Q Consensus 167 ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (720)
..-.+|..+..+.|.|.++...++.+...+.-. ...+..++.+........... ...+
T Consensus 108 ~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 165 (670)
T KOG0239|consen 108 LLSELQSNLSELNMALLESVEELSQAEEDNPSI---FVSLLELAQENRGLYLDLSKV-------------------TPEN 165 (670)
T ss_pred hccccccchhhhhhhhhhhhHhhhhhhcccccH---HHHHHHHHhhhcccccccccc-------------------chhh
Confidence 344577788888888888877666554433322 233555555554432221110 1111
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV 283 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~ 283 (720)
..+ .++....+...+-+|+..+.++|..|.++.++.
T Consensus 166 ~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 166 SLS-LLDLALKESLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred hHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222 333444556667778888888888888777663
No 309
>PF13166 AAA_13: AAA domain
Probab=60.77 E-value=3.4e+02 Score=32.03 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhHhhhhhhc
Q 005005 355 LRKKVDKLEESLDEANIYKLS 375 (720)
Q Consensus 355 l~~~~d~l~~~l~~~~~~~~~ 375 (720)
+.++.++++..+....++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~ 409 (712)
T PF13166_consen 389 LKKEQNELKDKLWLHLIAKLK 409 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444
No 310
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=59.70 E-value=1.9e+02 Score=28.82 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.4
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~ 275 (720)
-.+++.++.|+..|+.|++.|+++|.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999988888776
No 311
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.70 E-value=69 Score=37.84 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=66.8
Q ss_pred HHHHHHhHhhhhhhch---HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCC
Q 005005 361 KLEESLDEANIYKLSS---EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEP 437 (720)
Q Consensus 361 ~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 437 (720)
++.+-|+..+..+++- ..-++.-..++++++.++..++..++++.++..-|.....+..+.|...++..+..
T Consensus 192 ~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 266 (646)
T PRK05771 192 EVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEAL----- 266 (646)
T ss_pred HHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444455555554432 22355667888888999999999999999988888877776666555444433321
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcC
Q 005005 438 VDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNG 479 (720)
Q Consensus 438 ~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~ 479 (720)
..+.-.=+..+++|-|..++...+++.+.+...
T Consensus 267 ---------~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~ 299 (646)
T PRK05771 267 ---------SKFLKTDKTFAIEGWVPEDRVKKLKELIDKATG 299 (646)
T ss_pred ---------HhhhcCCcEEEEEEEeehhHHHHHHHHHHHhcC
Confidence 111111134455666777888899998876553
No 312
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.59 E-value=4.9e+02 Score=33.47 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=78.2
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh----------hHHHHh
Q 005005 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD----------QAISVL 349 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----------~~~~~~ 349 (720)
...+..=++.|......|..++++....+...+++.|.-- ++-++-.-+..-|..++++.. |--..=
T Consensus 313 q~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~---~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 313 QDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYN---SLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 3445555667777888899999999988888888877544 466666666666666555322 222222
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhH
Q 005005 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 350 ~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
..+--+|..+-+|...+... |.....||..-+-|....+..-+++++-+..|.. -..-|.+|.+-+..+|
T Consensus 390 eRDkwir~ei~~l~~~i~~~---ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e----~~~r~~~~~~~~~~~k 459 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDT---KEQENILQKEIEDLESELKEKLEEIKELESSINE----TKGRMEEFDAENTELK 459 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----hhhHHHHHHHHHHHHH
Confidence 33445666777776666543 3445555555555554444444444444444442 1334455554444443
No 313
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=58.67 E-value=62 Score=32.40 Aligned_cols=71 Identities=27% Similarity=0.395 Sum_probs=51.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHHHHHHHHHHHhhH
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYV-QLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 426 (720)
+..+|+++.+++++|.+.|..+ +|....-.+.-.|.+.+..+...++|...+ ++|-..++-++..-..|.
T Consensus 79 L~k~~Pev~~qa~~l~e~lQ~~---------vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~ 149 (155)
T PF07464_consen 79 LRKANPEVEKQANELQEKLQSA---------VQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLH 149 (155)
T ss_dssp GGG-SHHHHHT-SSSHHHHHHH---------HHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447999999999999998765 455566677778889999999999999988 899988888887766665
Q ss_pred H
Q 005005 427 E 427 (720)
Q Consensus 427 ~ 427 (720)
.
T Consensus 150 ~ 150 (155)
T PF07464_consen 150 E 150 (155)
T ss_dssp H
T ss_pred H
Confidence 4
No 314
>PRK09343 prefoldin subunit beta; Provisional
Probab=58.51 E-value=71 Score=30.31 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=32.9
Q ss_pred hhcchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 005005 259 NLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQ 308 (720)
Q Consensus 259 n~~~k~~~~~~k~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~ 308 (720)
+|.++.|...++..+..-.+ .+.++-.|||.-..|+..+++++.+|..+.
T Consensus 62 ~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 62 NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666654433 346677777777777777777777765543
No 315
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.36 E-value=18 Score=43.01 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=43.4
Q ss_pred CcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 005005 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQ 308 (720)
Q Consensus 242 ~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~ 308 (720)
...|-.|..|...|+.+++.||..|+.|+.+|.......+.-....+|-.-++..+..||.+|...-
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777888888888888888888877766555444444555555555555555554433
No 316
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.11 E-value=40 Score=35.51 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.2
Q ss_pred ccchhhHhhhhhhh
Q 005005 244 EIHSFSKELDSLKT 257 (720)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (720)
.+|.+..++..++.
T Consensus 115 R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 115 RLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHh
Confidence 36777778877776
No 317
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.03 E-value=3.8e+02 Score=31.46 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhch
Q 005005 377 EKMQQYNELMQQKMKLLEERLQRSD 401 (720)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (720)
+.|.+...=++++++.++.+++.+.
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344445556677777777766544
No 318
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.66 E-value=4.1e+02 Score=31.72 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=56.4
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (720)
.|..+-.|.-+|-+.++.|+..++.|. ----++..+||+|+-|+.-..+ +...-+.-|-|+..|-.+-+.--...+
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~---e~~e~rk~v~k~~~l~q~~~~~~~eL~ 308 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE---ETTEKRKAVKKRDDLIQSRKQVSFELE 308 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888899999999999999998 6778899999999998876544 444445555555555444333333333
Q ss_pred HHHHHH
Q 005005 330 NLQGLL 335 (720)
Q Consensus 330 ~l~~~l 335 (720)
.+++.+
T Consensus 309 K~kde~ 314 (613)
T KOG0992|consen 309 KAKDEI 314 (613)
T ss_pred HHHHHH
Confidence 344333
No 319
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=56.19 E-value=2.4e+02 Score=30.42 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=8.5
Q ss_pred CCCeEEEEecCCC
Q 005005 544 KGHLVEIVLPKYD 556 (720)
Q Consensus 544 lGhEV~VILPkY~ 556 (720)
.|..|.|.+..|+
T Consensus 261 ~Gq~v~i~~~~~~ 273 (346)
T PRK10476 261 VGDCATVYSMIDR 273 (346)
T ss_pred CCCEEEEEEecCC
Confidence 5777777665554
No 320
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=56.03 E-value=2e+02 Score=32.35 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (720)
.+++..+..|+.+..+-.+++ -..=+..+.+++.+...|.. +++.+ --+..++++..++.||..+ +.
T Consensus 305 ~~l~~~~q~L~~l~~rL~~a~--~~~L~~~~~~L~~l~~rL~~-----lsP~~---~L~r~~qrL~~L~~rL~~a---~~ 371 (438)
T PRK00286 305 RLLAQQQQRLDRLQQRLQRAL--ERRLRLAKQRLERLSQRLQQ-----QNPQR---RIERAQQRLEQLEQRLRRA---MR 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh-----cCHHH---HHHHHHHHHHHHHHHHHHH---HH
Confidence 345555555665555555552 23334455667777776653 23332 2356778888888887644 55
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005005 406 SYVQLYQESVKEFQDTL 422 (720)
Q Consensus 406 ~~~~~~~~~~~~~~~~l 422 (720)
..++-++..++.....|
T Consensus 372 ~~L~~~~~rL~~l~~rL 388 (438)
T PRK00286 372 RQLKRKRQRLEALAQQL 388 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444444
No 321
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.86 E-value=3.6e+02 Score=31.67 Aligned_cols=95 Identities=24% Similarity=0.276 Sum_probs=58.3
Q ss_pred HHHHHhhhhcchhhhhccccchhh----hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 005005 297 LKELESKLSISQEDVAKLSTLKVE----CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY 372 (720)
Q Consensus 297 ~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~ 372 (720)
++--|++|+.|-+ ++||.|++| -.-|-+.-..||.+|..++.-+--|=-+| =.|.+.=+.+.+.
T Consensus 379 ~kG~~~rF~~sla--aEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll----------vrl~eaeea~~~a 446 (488)
T PF06548_consen 379 VKGAESRFINSLA--AEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL----------VRLREAEEAASVA 446 (488)
T ss_pred cccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH----------HHHHhHHHHHHHH
Confidence 3334666665543 578888874 33455666778888877554443332222 2355555556666
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 373 KLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
+-..-..+|.|+.+-++|..|..+. +.||.+
T Consensus 447 ~~r~~~~eqe~ek~~kqiekLK~kh---~~Ei~t 477 (488)
T PF06548_consen 447 QERAMDAEQENEKAKKQIEKLKRKH---KMEIST 477 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 7777778888888888887776554 345544
No 322
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.75 E-value=43 Score=32.83 Aligned_cols=55 Identities=29% Similarity=0.369 Sum_probs=34.2
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 005005 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (720)
+..+.+..|+++.+.|++.|+.|.+.++..+- ...+..|+.||..+-++++.|+.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556667777778888888777765542 23455566666666666666654
No 323
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.69 E-value=2.6e+02 Score=28.79 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 005005 325 YEKVENLQGLLAKATKQAD 343 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~~ 343 (720)
-.|+.+|...|++...|..
T Consensus 149 EkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 149 EKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 324
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=54.64 E-value=1.6e+02 Score=32.09 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=48.7
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhh-h---HH
Q 005005 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQ-N---QE 354 (720)
Q Consensus 279 ~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~---~~ 354 (720)
+...+.-++++-..++..|++.|.+|...+..-.-+++ ..+-...-+-+..|+..+..+..+....-..... | +.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~-~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDP-KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 44555556666666666666666666666654333332 1222334555666666666666665554444444 3 24
Q ss_pred HHHHHHHHHHHHhH
Q 005005 355 LRKKVDKLEESLDE 368 (720)
Q Consensus 355 l~~~~d~l~~~l~~ 368 (720)
++.+++.|++.+.+
T Consensus 247 l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 247 LQARIKSLRKQIDE 260 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666644
No 325
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.05 E-value=4.9e+02 Score=32.38 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=48.6
Q ss_pred hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHHHHH
Q 005005 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENLQGL 334 (720)
Q Consensus 259 n~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (720)
+.-|.+-|+.+..-++.+-.....+..+.-+++.++..+.-.++.-... +.+......++.+-..+-...++|..-
T Consensus 532 kadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~ 611 (769)
T PF05911_consen 532 KADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEME 611 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444445555444444333321111 222222222232222332233444455
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 005005 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~ 370 (720)
|.+++.+.+..-. |=++...++..|+.-|+.++
T Consensus 612 L~~~~d~lE~~~~---qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 612 LASCQDQLESLKN---QLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5566555554433 33566666666666666444
No 326
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=53.97 E-value=2.4e+02 Score=28.25 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~ 370 (720)
.|-..++++.-|++...+.+++-.. ++.=.+|+++++..++++.
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~---~~~~~~k~~~~~~ei~~~~ 176 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKAS---GKNRQDKVEQAENEIEEAE 176 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc---chhhhHHHHHHHHHHHHHH
Confidence 3444555555566655555554221 1111456666666665554
No 327
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=53.87 E-value=8 Score=45.36 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=0.0
Q ss_pred CcccchhhHhhhhhhhhhh-------cchhHHHHHHHHhhhhhh--hhhHHHHH----HhhhhhHHhhHHHHHhhhhcch
Q 005005 242 NSEIHSFSKELDSLKTENL-------SLKNDIKVLKAELNSVKD--ADERVVML----EMERSSLESSLKELESKLSISQ 308 (720)
Q Consensus 242 ~~~~~~~~~~~~~~~~en~-------~~k~~~~~~k~~~~~~~~--~~~~~~~~----~~e~~~l~~~~~~~e~~~~~~~ 308 (720)
...+..|..+++.|++|-. .+++.|..+-.+|..--+ ..+..+.- +....+-.+.|..|...+..-+
T Consensus 141 ~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~ 220 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELE 220 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 3456666666666666654 445555555555544332 12211111 1122222333333333332221
Q ss_pred h----hhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHH-HHHHHHHHHHHhHhhhhhhchHHHHHHH
Q 005005 309 E----DVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQEL-RKKVDKLEESLDEANIYKLSSEKMQQYN 383 (720)
Q Consensus 309 ~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l-~~~~d~l~~~l~~~~~~~~~~~~~~~~~ 383 (720)
+ -..++..|...|..||++.+.=+.--+. .+..+..+ .+-++.+++-|++- ..+...+|..+.
T Consensus 221 ~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~----------F~~~~~~ls~~~i~~l~~El~RL--~~lK~~~lk~~I 288 (619)
T PF03999_consen 221 EEKEEREEKLQELREKIEELWNRLDVPEEEREA----------FLEENSGLSLDTIEALEEELERL--EELKKQNLKEFI 288 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH----------HhhccCcchHHHHHHHHHHHHHH--HHHHHHhHHHHH
Confidence 1 2234555556666666665433222111 12222221 12333344333332 233445566667
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (720)
+-.++++..+=..++-|+++.....-.|
T Consensus 289 ~~~R~ei~elWd~~~~s~eer~~F~~~~ 316 (619)
T PF03999_consen 289 EKKRQEIEELWDKCHYSEEERQAFTPFY 316 (619)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 7777777777777777777666544333
No 328
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.36 E-value=3e+02 Score=29.11 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=49.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHH---HHHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHHH
Q 005005 347 SVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLY-QESVKEFQDTL 422 (720)
Q Consensus 347 ~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 422 (720)
-++++.+..+.-+.|-++.++...- ...++|+++..+- .+.++...+..|+...+-|..-|.-+ .+-+.+|..++
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~-~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQY-ANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666656555555444321 1236777765544 45677777777777777777776666 45677777776
Q ss_pred HhhHHh
Q 005005 423 HSLKEE 428 (720)
Q Consensus 423 ~~~~~~ 428 (720)
....+.
T Consensus 209 ~~fles 214 (234)
T cd07664 209 IKYLES 214 (234)
T ss_pred HHHHHH
Confidence 665543
No 329
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=53.17 E-value=18 Score=36.65 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=26.8
Q ss_pred CccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 523 PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 523 PfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
..+-+|| |.|+....+.|.+.|++|+||-|.+
T Consensus 12 ~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 12 RVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3333466 9999999999999999999999875
No 330
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.07 E-value=4.6e+02 Score=30.89 Aligned_cols=176 Identities=18% Similarity=0.298 Sum_probs=94.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc----chhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST----LKVECK 322 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~ 322 (720)
.+..-++-+++.|..|+..++.++..-.--.+-.+....++++...++.....+...+..-+.--|.+.. +.-.+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 5577788889999999999999987664444455566677777777766666666665544433332211 111111
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch-
Q 005005 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD- 401 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 401 (720)
.+-+....+...|+...+.-..|-- +=+.++.++-..+-.++..|+-.++.+-+ .+-.....++..+...|...-
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~---~l~~~~~~l~~ikR~lek~nLPGlp~~y~-~~~~~~~~~i~~l~~~L~~~pi 465 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEARE---KLQKLKQKLREIKRRLEKSNLPGLPEDYL-DYFFDVSDEIEELSDELNQVPI 465 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHHHHHHHHHHhcCCc
Confidence 2222222222222222222222211 11345556666666677777777765533 233444556666666665443
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhH
Q 005005 402 --EEIHSYVQLYQESVKEFQDTLHSLK 426 (720)
Q Consensus 402 --~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (720)
.+|+.++..=+..|..+.+..+.+.
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444443
No 331
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=51.80 E-value=63 Score=35.42 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=22.6
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
.||++++.| |||== +.++|.++|.+.|++|.++-
T Consensus 6 ~ki~i~aGg------tsGhi-~paal~~~l~~~~~~~~~~g 39 (385)
T TIGR00215 6 PTIALVAGE------ASGDI-LGAGLRQQLKEHYPNARFIG 39 (385)
T ss_pred CeEEEEeCC------ccHHH-HHHHHHHHHHhcCCCcEEEE
Confidence 356666655 45432 22489999999888877664
No 332
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.59 E-value=4.2e+02 Score=30.31 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l 366 (720)
+-+....+..+++.....-++....++.-++++..+.+..+.+
T Consensus 361 ~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~ 403 (503)
T KOG2273|consen 361 LAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQL 403 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333333333444444444444445555566666665555443
No 333
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=51.36 E-value=5.3e+02 Score=31.38 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCc
Q 005005 155 VQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPA 234 (720)
Q Consensus 155 ~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (720)
..-|++++.-+...+.+|..|.-|+-|+++...++...... .+.+.+..+++ +
T Consensus 127 k~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~--~a~~~e~~~~q---~---------------------- 179 (629)
T KOG0963|consen 127 KEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN--AANETEEKLEQ---E---------------------- 179 (629)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---H----------------------
Confidence 34578888888889999999999999999998776654431 12233222221 1
Q ss_pred ccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHH----hhhhhHHhhHHHHHhhhhc
Q 005005 235 NEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLE----MERSSLESSLKELESKLSI 306 (720)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~----~~~~~~~~~~~----~e~~~l~~~~~~~e~~~~~ 306 (720)
.-+-...|+.+++.++.-++.+...++.. ..|...++.++ .|-+..-+-+.=+=..|..
T Consensus 180 -------------~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~ 246 (629)
T KOG0963|consen 180 -------------WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELED 246 (629)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 12233445555555555555555444332 22222222221 1122222212111122222
Q ss_pred chhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh--------hHHHHhhh----hHHHHHHHHHHHHHHhHhhhhhh
Q 005005 307 SQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD--------QAISVLQQ----NQELRKKVDKLEESLDEANIYKL 374 (720)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~~----~~~l~~~~d~l~~~l~~~~~~~~ 374 (720)
||.-+ -.+...|+.|...|.+++--.+ +..++|.| ++.|-.-|..+++||.+.- .-
T Consensus 247 aq~ri----------~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~--e~ 314 (629)
T KOG0963|consen 247 AQQRI----------VFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER--EK 314 (629)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 22211 1355666777777766654333 33455544 4556667777888876542 23
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 005005 375 SSEKMQQYNELMQQKMKLLEE 395 (720)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~ 395 (720)
++..|++.+..+-.+..-+|+
T Consensus 315 ~~~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEE 335 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555554
No 334
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=51.32 E-value=4.4e+02 Score=30.48 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=27.4
Q ss_pred ccchhhHhhhhhhhh----hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 005005 244 EIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (720)
Q Consensus 244 ~~~~~~~~~~~~~~e----n~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 319 (720)
.|.+|-.||.+||.= ....+.+|..++.++..++...-. ..---.|+.++++-+.|. .
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~-~~~~~~R~~~~~~k~~L~-----------------~ 213 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTN-ASGDSNRAYMESGKKKLS-----------------E 213 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHH-----------------H
Confidence 344445555554432 223456677777777766662211 113456777777766554 4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhh
Q 005005 320 ECKDLYEKVENLQGLLAKATKQAD 343 (720)
Q Consensus 320 ~~~~~~~~~~~l~~~l~~~~~~~~ 343 (720)
+|..|-.+|+.||++.+...+-+-
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~ 237 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVV 237 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888766543
No 335
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=50.62 E-value=24 Score=35.54 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||.|.+-+.|.+.|++.||+|.++.+.
T Consensus 6 IGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 6 LGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4889999999999999999999987654
No 336
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.57 E-value=19 Score=36.93 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 528 GGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 528 GGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
-|+|.|-..+++.|.+.||+|.+|-...
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 4899999999999999999999997654
No 337
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.26 E-value=67 Score=28.33 Aligned_cols=46 Identities=30% Similarity=0.353 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 261 SLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 261 ~~k~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
.++.|...+...|.. .+..+..+-.|+++...++..+++++.+|-+
T Consensus 55 fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444432 2334455666666667777777777766654
No 338
>COG4550 Predicted membrane protein [Function unknown]
Probab=49.60 E-value=2.6e+02 Score=27.31 Aligned_cols=96 Identities=20% Similarity=0.364 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 005005 324 LYEKVENLQGLLAKA-----TKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (720)
.-.++.+|...+..+ -+||+.+ +-+||.+..+|++++..=++|.-++- +.+ ++-+|..|.+.+
T Consensus 7 i~~~a~~la~~ik~teeV~~fq~aE~q---in~n~~v~~~~~~iK~lQKeAVn~q~----y~K-----~eAlkqses~i~ 74 (120)
T COG4550 7 ILKQADNLANKIKETEEVKFFQQAEAQ---INANQKVKTKVDEIKKLQKEAVNLQH----YDK-----EEALKQSESKID 74 (120)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHhhHHHHH----hhH-----HHHHHHHHHHHH
Confidence 445555555554432 2355544 67899999999999999999986542 211 344566666666
Q ss_pred hchhhHHH--HHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 399 RSDEEIHS--YVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 399 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
.-..+|.+ -|+=|+.|..+--+.|.-+..+-+.
T Consensus 75 ~le~ei~~~PlVeefr~sq~daNdLlQ~it~tie~ 109 (120)
T COG4550 75 ELEAEIDHLPLVEEFRTSQEDANDLLQYITKTIET 109 (120)
T ss_pred HHHHHHhcCchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66666665 3666777766666666555544443
No 339
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=49.35 E-value=6.6e+02 Score=31.92 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=55.3
Q ss_pred hhhHhhhHHHHHHHHHHhhhc-----ccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHH
Q 005005 196 KIHVELLEDQLQKLQHELTHR-----GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLK 270 (720)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k 270 (720)
-|.--|++-+++.||+|+.+- .-.+|....++..+..|.++- |- -.|+=|+.+.+|- ..|+
T Consensus 1084 ei~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiek----Dm---caselfneheeeS-------~ifd 1149 (1424)
T KOG4572|consen 1084 EIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEK----DM---CASELFNEHEEES-------GIFD 1149 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccch----hH---HHHHHHHHhhhhc-------chHH
Confidence 345557888999999999764 233333334444444333221 11 2233334333333 3467
Q ss_pred HHhhhhhhhhhHHHHHHh---hhhh-----HHhhHHHHHhh
Q 005005 271 AELNSVKDADERVVMLEM---ERSS-----LESSLKELESK 303 (720)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~---e~~~-----l~~~~~~~e~~ 303 (720)
++++.++..-+--+..+| |.+. ++++|+++|..
T Consensus 1150 aa~nKiakiHe~AfEieknlkeQaielank~dpeLraiead 1190 (1424)
T KOG4572|consen 1150 AAGNKIAKIHEIAFEIEKNLKEQAIELANKGDPELRAIEAD 1190 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHhh
Confidence 788888888888888887 4332 66777777754
No 340
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=49.19 E-value=26 Score=39.30 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=35.2
Q ss_pred hhccCCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 501 LKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 501 ~~~~~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
.+++...++++|||+. |||-|-+-..|.++|.+.|++|+++-.
T Consensus 110 ~~~~~~~~~~~mkILV----------TGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 110 GRVPVGIGRKRLRIVV----------TGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCCcccccCCCEEEE----------ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3455666788899763 599999999999999999999998753
No 341
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.65 E-value=5.9e+02 Score=31.12 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh-----Hhhhhh--hchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 328 VENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD-----EANIYK--LSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 328 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
+..+...|...++..+.+...|..+|. ..+.|++.+. +.++.. --+.-+.+.+..||+++..++..+...
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l 260 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQE---ERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKEL 260 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666665333 3334444433 001110 111122333456666666666666655
Q ss_pred hhhHHHH
Q 005005 401 DEEIHSY 407 (720)
Q Consensus 401 ~~~~~~~ 407 (720)
..+...-
T Consensus 261 ~~~~~~~ 267 (670)
T KOG0239|consen 261 NDQVSLL 267 (670)
T ss_pred HHHHHHH
Confidence 5555443
No 342
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.50 E-value=1.3e+02 Score=26.54 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=33.8
Q ss_pred HHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 005005 336 AKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (720)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (720)
+..-.++.+| ++...-|+.+|+.|++.-.... -.-+.|++.|..|++.-....+|++.
T Consensus 7 ~~LE~ki~~a---veti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 7 EQLEEKIQQA---VETIALLQMENEELKEKNNELK---EENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333355555 3445667777777776432222 33455677777777777666666653
No 343
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=48.36 E-value=3.4e+02 Score=28.34 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=76.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~-~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 325 (720)
++...+..+..+.-.+-+.-..+-..|..+ .+.......+++.|-.+...-..++.++..+-..+.|-. .+|+ ..+
T Consensus 62 s~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK-~~Y~--~~c 138 (234)
T cd07652 62 SFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAK-ARYD--SLA 138 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHH--HHH
Confidence 344445555544444433333333333222 223334445566666555555555555555555444422 2232 344
Q ss_pred HHHHHHHHH--HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 005005 326 EKVENLQGL--LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (720)
Q Consensus 326 ~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (720)
+..|.++.. =.+..--........++-.++++|++..+..... .+-+.....-+=|+-.+-+-++.|-+-..++|.-
T Consensus 139 ~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~-~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~ 217 (234)
T cd07652 139 DDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYAS-KVNAAQALRQELLSRHRPEAVKDLFDLILEIDAA 217 (234)
T ss_pred HHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 444444321 0000000112233445556888888876543321 1222222222223445666677777777788888
Q ss_pred HHHHHHHHH
Q 005005 404 IHSYVQLYQ 412 (720)
Q Consensus 404 ~~~~~~~~~ 412 (720)
+.-+++=|+
T Consensus 218 l~~~~~~~~ 226 (234)
T cd07652 218 LRLQYQKYA 226 (234)
T ss_pred HHHHHHHHh
Confidence 888777775
No 344
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=48.27 E-value=1.9e+02 Score=34.22 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 005005 159 EDLHKILQEKEALQGEINALEMRLAETDARI 189 (720)
Q Consensus 159 ~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~ 189 (720)
++++++..+-.+|+.+++.|+.++++...++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
No 345
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=48.17 E-value=3.3e+02 Score=28.01 Aligned_cols=43 Identities=35% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~ 370 (720)
+=+++++..|..--+|+++. +-+-=++||.+|-.+++.|..+.
T Consensus 29 ~~~d~~~~~l~~~~~qa~~y--~~~~~~elR~qv~~l~~~l~~v~ 71 (208)
T PF14644_consen 29 QCADNLVQKLQSYQEQADEY--HNSCLQELRNQVERLEELLPKVP 71 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666676666777777 55666889999999998876553
No 346
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.14 E-value=2.3e+02 Score=27.28 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=14.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhH
Q 005005 348 VLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~ 368 (720)
+-+.--+|+.+|+.+...|+.
T Consensus 56 ~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456777788777777665
No 347
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=48.13 E-value=5.2e+02 Score=30.34 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=63.5
Q ss_pred hhhHhhhhhhhhhhcch----hHHHHHHHHhhhhhhhhhHHHHHHhhhh-------hHHhhHHHHHhhhhcchhhhhccc
Q 005005 247 SFSKELDSLKTENLSLK----NDIKVLKAELNSVKDADERVVMLEMERS-------SLESSLKELESKLSISQEDVAKLS 315 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k----~~~~~~k~~~~~~~~~~~~~~~~~~e~~-------~l~~~~~~~e~~~~~~~~~~~~~~ 315 (720)
+|+.-++.||-|-.-|. ..-+|+..+|- ..+.+||.+-- .|.-.--+||-++..-|+-+..
T Consensus 133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm------~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN-- 204 (552)
T KOG2129|consen 133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLM------NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVN-- 204 (552)
T ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHHHH------HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH--
Confidence 56778888886654433 33345555443 23333433322 2444445667766666654432
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHh---------------------hhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh
Q 005005 316 TLKVECKDLYEKVENLQGLLAKAT---------------------KQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 374 (720)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~ 374 (720)
.||.+...|..=-+-.. ..-|.|....-.-+-||..|..|..-|..|- |-
T Consensus 205 -------~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq--k~ 275 (552)
T KOG2129|consen 205 -------SLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ--KS 275 (552)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 47777776654222222 2334444444455566777777777766553 44
Q ss_pred chHHHHHH
Q 005005 375 SSEKMQQY 382 (720)
Q Consensus 375 ~~~~~~~~ 382 (720)
-.+|++||
T Consensus 276 ~~ek~~qy 283 (552)
T KOG2129|consen 276 YQEKLMQY 283 (552)
T ss_pred HHHHHHHH
Confidence 55666665
No 348
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=48.10 E-value=4.1e+02 Score=29.16 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc------hhh------hhccccchhhhhhHHHHHHHH-----HH
Q 005005 271 AELNSVKDADERVVMLEMERSSLESSLKELESKLSIS------QED------VAKLSTLKVECKDLYEKVENL-----QG 333 (720)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~l-----~~ 333 (720)
+.|.++......-..|-+||..+=.-+.+..++|+-. ..| +.++..|+-|+..|..+...+ .-
T Consensus 6 ~~l~~~~~~~~~~~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~V 85 (268)
T PF11802_consen 6 QDLDDVEDVTDAKEELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEV 85 (268)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHH
Q ss_pred HHHHHhhhhhhHHHHhhhh-HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHH
Q 005005 334 LLAKATKQADQAISVLQQN-QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL-QRSDEEIHSYVQLY 411 (720)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~-~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 411 (720)
|+.-+..+-++-+.=|+.. ...+.|-++|++.|++ .+...+.-||..+-|..+.+.++... .-|+.-+..-+.-+
T Consensus 86 L~~lgkeelqkl~~eLe~vLs~~q~KnekLke~Ler---Eq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K 162 (268)
T PF11802_consen 86 LLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLER---EQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTK 162 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 005005 412 QESVKEFQDTL 422 (720)
Q Consensus 412 ~~~~~~~~~~l 422 (720)
..-+++++..|
T Consensus 163 ~~~~k~~~e~L 173 (268)
T PF11802_consen 163 IEKIKEYKEKL 173 (268)
T ss_pred HHHHHHHHHHH
No 349
>PRK10869 recombination and repair protein; Provisional
Probab=48.05 E-value=5.3e+02 Score=30.41 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhchhhHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
+.|+++++.++..+...-.++..
T Consensus 344 ~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 344 ETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655554
No 350
>PLN02842 nucleotide kinase
Probab=48.00 E-value=95 Score=36.43 Aligned_cols=145 Identities=16% Similarity=0.248 Sum_probs=82.1
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhc--ccCChhHHHHHHHH
Q 005005 396 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLE--KKLSTSEAKLLREM 473 (720)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~--~~i~~~~as~lr~~ 473 (720)
|.....+-|+.-++.|....+..-+ .-..+.....++.=+.++|.+++=.|+..+.. +++-...|+....
T Consensus 150 R~DD~eE~IkkRL~~Y~~~t~pIl~-------~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~~~~~~~~~~~~~- 221 (505)
T PLN02842 150 RPDDTEEKVKARLQIYKKNAEAILS-------TYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDATKMIKTKKASPVQD- 221 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhHHH-------hcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhhhhcccccccchhh-
Confidence 3333444555555556555443222 22222233334444667788888888777553 3334444444433
Q ss_pred HHhhcCcchhhhH-hhhhhch------HHHHH-hhhhccCCCCCCCceEEEEecccCC---ccccCCHHHHHHHHHHHHH
Q 005005 474 VWKRNGRIRDAYM-ECKEKNE------HEAIS-TFLKLTSSSISSGLHVIHIAAEMAP---VAKVGGLGDVVAGLGKALQ 542 (720)
Q Consensus 474 v~~~~~~~~~~~~-~~~~~~~------~e~~~-~~~~~~~~~k~~~MKILfVSSE~aP---fAKVGGLGDVVgsLPKALa 542 (720)
.| |-.++++ .+.|..+ .++.. ..+.+.+ ....|+|-+.-+|+.| ...+|++=.+|..+..+|+
T Consensus 222 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--g~~r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~ 295 (505)
T PLN02842 222 KW----RGIPTRLNNIPHSREIRAYFYDDVLQATQRAVND--GRTRLKVEINIPELNPEMDVYRIGTLMELVRVLALSFA 295 (505)
T ss_pred hh----ccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhC--CcceEEEEEecCccccccccccchhHHHHHHHHHHHHh
Confidence 34 1122221 2222221 01111 1122222 4477888888899888 3568999999999999999
Q ss_pred HCCCeEEEEecC
Q 005005 543 KKGHLVEIVLPK 554 (720)
Q Consensus 543 ~lGhEV~VILPk 554 (720)
+.|-.|.|+.|.
T Consensus 296 ~~~~~~kv~~~~ 307 (505)
T PLN02842 296 DDGKRVKVCVQG 307 (505)
T ss_pred hcCCceEEEecC
Confidence 999999999997
No 351
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.65 E-value=5.4e+02 Score=30.41 Aligned_cols=187 Identities=22% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHhhhcccCccc-chhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHH
Q 005005 209 LQHELTHRGVSEHS-ELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLE 287 (720)
Q Consensus 209 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~ 287 (720)
.++.+.+-|.+-+. .-.-|..-..|...----.+-..-+--+|++++.++|-..-+-....|+.+.+.+..+.+-..++
T Consensus 189 ~~~~ld~wg~~~~t~~df~f~~t~dPa~p~~p~~~~passe~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~ 268 (521)
T KOG1937|consen 189 PRKWLDQWGNSSHTEKDFNFKLTDDPALPPKPIFAKPASSEEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFE 268 (521)
T ss_pred hhhHHHHHhccCCccccccceecCCCCCCCccccCCCccccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 005005 288 MERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (720)
Q Consensus 288 ~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~ 367 (720)
-+-|.|+ .+.-+-.+++. ++=+--++|+.|-....+-.-+-+..-+|-+|-|.-.-.-...|.
T Consensus 269 e~~selE-~llklkerl~e----------------~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr 331 (521)
T KOG1937|consen 269 EQNSELE-KLLKLKERLIE----------------ALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLR 331 (521)
T ss_pred HHHHHHH-HHHHhHHHHHH----------------hcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred HhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 005005 368 EANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (720)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (720)
++---...-. .. -.++..+|--++.-++||++-..+|.....+.+
T Consensus 332 ~~l~~~e~e~------~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 332 EELKNLETED------EE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHhcccchH------HH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
No 352
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=47.46 E-value=7e+02 Score=31.63 Aligned_cols=91 Identities=25% Similarity=0.280 Sum_probs=48.6
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHH---HHHHH----HHHHHHHHHHHHh--------hhhhhHHHhh-----hhchhhh
Q 005005 129 STSQLDNLISMIRNAEKNILLLNEA---RVQAL----EDLHKILQEKEAL--------QGEINALEMR-----LAETDAR 188 (720)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~~l~~~---r~~a~----~~~~~~~~ek~~l--------q~~~~~l~~~-----l~e~~~~ 188 (720)
-..-....-||+-|..+|.-.--+. |-.-| ++++++-.++|+- |.+..+.|++ ..|..++
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556678888888876544332 22223 3555555544433 3333333332 3344555
Q ss_pred hhHhhhhhhhHhhhHHHHHHHH-HHhhhcccC
Q 005005 189 IRVAAQEKIHVELLEDQLQKLQ-HELTHRGVS 219 (720)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 219 (720)
-...-++.|+...+.+.++.+. .|+-.+|..
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k 652 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGK 652 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566667777777777776665 444444443
No 353
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=47.30 E-value=23 Score=41.96 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=17.3
Q ss_pred ccchhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Q 005005 130 TSQLDNLISMIRNAEKN-ILLLNEARVQALEDLHKILQ 166 (720)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-i~~l~~~r~~a~~~~~~~~~ 166 (720)
+.+-|+..+|.--+-.- --.=-.-|-.-..|..|.++
T Consensus 245 ~~eaEEvAtfyA~mle~ey~tk~vF~~NFf~Dwrk~m~ 282 (759)
T KOG0981|consen 245 TPEAEEVATFYAAMLEHEYATKEVFRKNFFNDWRKVMT 282 (759)
T ss_pred CHHHHHHHHHHHHHHhcchhccHHHHHHHHHHHHHHhh
Confidence 44556766665432110 01111234455666667666
No 354
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=47.20 E-value=51 Score=37.48 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecC
Q 005005 618 DDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHN 678 (720)
Q Consensus 618 DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHN 678 (720)
++..-|.-+++..++.+.+.-..-|+|.+||.|=.++ |.+++.. ....++.|..|-
T Consensus 105 ~~w~~Y~~vN~~fA~~i~~~~~~~d~vwvhDYhl~l~-p~~lr~~----~~~~~igfFlHi 160 (456)
T TIGR02400 105 KAWEAYRRVNRLFAEALAPLLQPGDIVWVHDYHLMLL-PAMLREL----GVQNKIGFFLHI 160 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEecchhhHH-HHHHHhh----CCCCeEEEEEeC
Confidence 3445665666666666555433458999999999998 6666533 235788999993
No 355
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.97 E-value=2.5e+02 Score=30.79 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=89.2
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhh--hhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCc
Q 005005 144 EKNILLLNEA-RVQALEDLHKILQEKEALQGE--INALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSE 220 (720)
Q Consensus 144 ~~~i~~l~~~-r~~a~~~~~~~~~ek~~lq~~--~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (720)
=.|..|=|+. |-.=|+-|=.| .+.||.. -++=+.+|.+.++-++--.-.++.|.-|...|+.+...--..
T Consensus 113 AsNc~lkS~~~RS~yLe~Lc~I---IqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~---- 185 (269)
T PF05278_consen 113 ASNCKLKSQQFRSYYLECLCDI---IQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIY---- 185 (269)
T ss_pred hhccccCcHHHHHHHHHHHHHH---HHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH----
Confidence 4565555543 44444444444 4455542 355678888999999888889999999988887765432211
Q ss_pred ccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHH
Q 005005 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKEL 300 (720)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 300 (720)
........|--..+.+++..+.+|... .+-+...|+|-+.+...+.++
T Consensus 186 -----------------------------~~~~~~e~eke~~~r~l~~~~~ELe~~---~EeL~~~Eke~~e~~~~i~e~ 233 (269)
T PF05278_consen 186 -----------------------------DQHETREEEKEEKDRKLELKKEELEEL---EEELKQKEKEVKEIKERITEM 233 (269)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 111222223333344566666655443 556667777777777777777
Q ss_pred HhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 005005 301 ESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (720)
Q Consensus 301 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 332 (720)
=.+|..+....++++.-= ..++-||++++
T Consensus 234 ~~rl~~l~~~~~~l~k~~---~~~~sKV~kf~ 262 (269)
T PF05278_consen 234 KGRLGELEMESTRLSKTI---KSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 777777766666655322 23677777764
No 356
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.47 E-value=2.9e+02 Score=26.90 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=46.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhh-chHHHHH---HHHHHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHH
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKL-SSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQ-ESVKEFQDTL 422 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 422 (720)
++.+.+.+++.+.+.++.++......- ...+++. -...+++.++.++.++......+...+.-+. .-+.+|+.+|
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l 194 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665555433211 2233332 2334566667777777777777776665543 3566777777
Q ss_pred HhhHHhh
Q 005005 423 HSLKEES 429 (720)
Q Consensus 423 ~~~~~~~ 429 (720)
..+-...
T Consensus 195 ~~~~~~q 201 (218)
T cd07596 195 KEFARLQ 201 (218)
T ss_pred HHHHHHH
Confidence 6665443
No 357
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.36 E-value=3.2e+02 Score=27.47 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=40.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (720)
..-+.|+++-.+|...+.+++.|+..-.. -....++|+..-..+ |.++... +| .++-|+++|+.
T Consensus 33 ~vLE~Le~~~~~n~~~~~e~~~L~~d~e~------L~~q~~~ek~~r~~~----e~~l~~~-Ed-----~~~~e~k~L~~ 96 (158)
T PF09744_consen 33 RVLELLESLASRNQEHEVELELLREDNEQ------LETQYEREKELRKQA----EEELLEL-ED-----QWRQERKDLQS 96 (158)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHH----HHHHHHH-HH-----HHHHHHHHHHH
Confidence 34566777777777666666666653221 122233333332222 2222211 23 34678889999
Q ss_pred HHHHHHHHHHH
Q 005005 327 KVENLQGLLAK 337 (720)
Q Consensus 327 ~~~~l~~~l~~ 337 (720)
+|+.|+..-..
T Consensus 97 ~v~~Le~e~r~ 107 (158)
T PF09744_consen 97 QVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHH
Confidence 99998875433
No 358
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.29 E-value=2.8e+02 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=17.2
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~ 379 (720)
.|...++|++++.+|++.|+ ...+..++.+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~--~~~~~Dp~~i 137 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE--KYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCHHHH
Confidence 45555666777777777666 3333445444
No 359
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.16 E-value=1.3e+02 Score=27.79 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=26.8
Q ss_pred hcchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 260 LSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 260 ~~~k~~~~~~k~~~~~-~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
+.++.|....+..|.. +...+.++..|++.-..|+..+++++++|.
T Consensus 59 vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555565555554433 223356666666666666666666666654
No 360
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=45.84 E-value=7.4e+02 Score=31.48 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=5.5
Q ss_pred CceEEecC
Q 005005 593 GLPVYFIE 600 (720)
Q Consensus 593 GVpVYFID 600 (720)
+++++|+|
T Consensus 975 ~~~~l~lD 982 (1047)
T PRK10246 975 RIDSLFLD 982 (1047)
T ss_pred CCCEEEEe
Confidence 35678887
No 361
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=45.81 E-value=2.6e+02 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.308 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhhhhhhh
Q 005005 265 DIKVLKAELNSVKDADE 281 (720)
Q Consensus 265 ~~~~~k~~~~~~~~~~~ 281 (720)
|+..++..+...+...+
T Consensus 31 d~~~~~~~l~~~~~~~~ 47 (213)
T cd00176 31 DLESVEALLKKHEALEA 47 (213)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55555555544443333
No 362
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=45.49 E-value=4.1e+02 Score=28.40 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 005005 356 RKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (720)
Q Consensus 356 ~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (720)
+++++..+...+...+++..-+..+.--+..+.+++..+.++.
T Consensus 127 ~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~ 169 (331)
T PRK03598 127 QNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLS 169 (331)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666655555444444444445555554444
No 363
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.15 E-value=39 Score=30.61 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHhhhcc
Q 005005 200 ELLEDQLQKLQHELTHRG 217 (720)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~ 217 (720)
.++-+..+..+.-+..|+
T Consensus 5 k~ir~n~e~v~~~l~~R~ 22 (108)
T PF02403_consen 5 KLIRENPEEVRENLKKRG 22 (108)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCHHHHHHHHHHcC
Confidence 345556777777888776
No 364
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.58 E-value=3.2e+02 Score=26.97 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=27.4
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHH
Q 005005 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (720)
Q Consensus 250 ~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~ 285 (720)
.+++.+|..|..++.-+..+..+|....+..+-+-.
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~ 41 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL 41 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 467788888888888888888888777776665443
No 365
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.35 E-value=5e+02 Score=29.04 Aligned_cols=179 Identities=22% Similarity=0.339 Sum_probs=89.0
Q ss_pred hhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcc------cCcccchhhhhcCCCCcccccccCCcc
Q 005005 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRG------VSEHSELDVFANQNEPANEDLVLNNSE 244 (720)
Q Consensus 171 lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (720)
-.|++|+|.+.-+-...++. .+|-.-+-||.++|-.|.-|+..- .+..+++.+-..... |--
T Consensus 61 y~~QLn~L~aENt~L~SkLe---~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~r---------dEw 128 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLE---KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRAR---------DEW 128 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHH---HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHh---------hHH
Confidence 34555666554444433333 345566778899999998888641 111111111110000 000
Q ss_pred cc---hhhHhhhhhhhhhhcchhH-------HHHHHHHhhhhhhh----hhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 005005 245 IH---SFSKELDSLKTENLSLKND-------IKVLKAELNSVKDA----DERVVMLEMERSSLESSLKELESKLSISQED 310 (720)
Q Consensus 245 ~~---~~~~~~~~~~~en~~~k~~-------~~~~k~~~~~~~~~----~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~ 310 (720)
+| -+.-+++.||..|-.|-.. +..|+.+|..+.++ .=-+-.+.++.+--...++|||......++.
T Consensus 129 ~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~k 208 (305)
T PF14915_consen 129 VRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDK 208 (305)
T ss_pred HHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 00 0111233344444443332 23344444333322 1123344556666777889999998888888
Q ss_pred hhccccchhhhhhHHHHHHH-------HHHHHHHHhhhhhh-HHHHhhhhHHHHHHHHHHHH
Q 005005 311 VAKLSTLKVECKDLYEKVEN-------LQGLLAKATKQADQ-AISVLQQNQELRKKVDKLEE 364 (720)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-------l~~~l~~~~~~~~~-~~~~~~~~~~l~~~~d~l~~ 364 (720)
|++--. +.|| +-|++.. |+..|+.|-+.++. --+|..=...+++-|.+|.+
T Consensus 209 v~k~~~-Kqes--~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~a 267 (305)
T PF14915_consen 209 VNKYIG-KQES--LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQA 267 (305)
T ss_pred HHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 887544 4443 3344333 55677777777763 22344433445555555554
No 366
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.16 E-value=41 Score=37.46 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHhhhhhh
Q 005005 356 RKKVDKLEESLDEANIYKL 374 (720)
Q Consensus 356 ~~~~d~l~~~l~~~~~~~~ 374 (720)
..+++.||......||-=+
T Consensus 178 ~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 178 EDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHhhccCCceeEE
Confidence 4567778888888886543
No 367
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.05 E-value=95 Score=33.11 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=20.3
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 315 STLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
.+|+-|-..||||+-=||..=.+++...+.+
T Consensus 117 ~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~ 147 (248)
T PF08172_consen 117 ESLRADNVKLYEKIRYLQSYNNKGSGSSSSA 147 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCccc
Confidence 3455555569999999998876544444333
No 368
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=43.78 E-value=2.9e+02 Score=30.75 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhhhcc----cCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhh
Q 005005 201 LLEDQLQKLQHELTHRG----VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN 274 (720)
Q Consensus 201 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~ 274 (720)
.||++-..||.|.++-. .-|.....+ +.+ ....+..-+..|-.|++||..-.+||+...+.|..|-+++.
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqL-v~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQL-VLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHH-HHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777887766642 112121111 111 11222334566777888888888888887777777766554
No 369
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.73 E-value=33 Score=28.84 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=35.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL 293 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l 293 (720)
.+..++..|+.+...++...+.|+.++...+.+.+++...-+++-++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 55667777777777777777888888888767888887777766543
No 370
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.64 E-value=2.1e+02 Score=35.34 Aligned_cols=124 Identities=26% Similarity=0.224 Sum_probs=69.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCc
Q 005005 141 RNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSE 220 (720)
Q Consensus 141 ~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (720)
+|-|||- -|+.-=..|=++|.+-+. -++|-.---.|..|+++.-+.=.-...--.+++-++.+++.+-.||-.-.--+
T Consensus 109 q~eekn~-slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqre 186 (916)
T KOG0249|consen 109 QNEEKNR-SLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQRE 186 (916)
T ss_pred hhHHhhh-hhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556664 445544556666776666 55554433445556655533333333334556667777777777765431111
Q ss_pred ccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh
Q 005005 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (720)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~ 280 (720)
. +|... +..-.+.+- +-|+.-+.|-|--++|++.|-+++..++..-
T Consensus 187 e------mneeh-----~~rlsdtvd---ErlqlhlkermaAle~kn~L~~e~~s~kk~l 232 (916)
T KOG0249|consen 187 K------MNEEH-----NKRLSDTVD---ERLQLHLKERMAALEDKNRLEQELESVKKQL 232 (916)
T ss_pred H------hhhhh-----ccccccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11100 001122222 6677778899999999999999988887543
No 371
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=43.60 E-value=1.6e+02 Score=35.48 Aligned_cols=181 Identities=19% Similarity=0.241 Sum_probs=95.6
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchh------hhhccccchhhhhh----HHHHHHHHHHHHHHHhhh-----hh
Q 005005 279 ADERVVMLEMERSSLESSLKELESKLSISQE------DVAKLSTLKVECKD----LYEKVENLQGLLAKATKQ-----AD 343 (720)
Q Consensus 279 ~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~-----~~ 343 (720)
.++....++.+.+.+++.+++++..+.+.+. |++-+...+..--. --++.+.+...++...+- -.
T Consensus 111 ~ee~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (660)
T COG1269 111 VEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEA 190 (660)
T ss_pred hhHHHHhHHHHHHHHhhhHHHHHHHHHHhhhhhccchhhHhhcccceEEEEeeeehhhhhhHHHhhcccccchhhhcccc
Confidence 5666666666677777777777766655442 22222222221000 122333333333332221 01
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH--HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 005005 344 QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM--QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 344 ~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (720)
....|.-.-.+.-++|++.-+++ ....++.+..+. .++-.-+.++++..+..++.-..++..+.+.|+..+......
T Consensus 191 ~~~~v~~~~~~~~~~v~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 269 (660)
T COG1269 191 SVVIVVAHGAEDLDKVSKILNEL-GFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREI 269 (660)
T ss_pred ceEEEEEecccchHHHHHHHHhC-CcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223334455677776666 344444444442 445566677777777777788888888888888887777776
Q ss_pred HHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhh-hhhhcccCChhHHHHHHHHHH
Q 005005 422 LHSLKEESKKRAVHEPVDDMPWEFWSRLLLIID-GWLLEKKLSTSEAKLLREMVW 475 (720)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid-~~~l~~~i~~~~as~lr~~v~ 475 (720)
|+.-+.-..- ++. +-+.+ +..++|-+..++...+.+.+=
T Consensus 270 l~~e~~~~~~--------------~~~-~~~t~~~~~~eGWvP~~~~~~~~~~i~ 309 (660)
T COG1269 270 LEIEKALGDV--------------LSK-LARTEYTLAIEGWVPADEVEKLKKIIN 309 (660)
T ss_pred HHHHHHHHHH--------------HHH-hhccceEEEEEEeccHHHHHHHHHHHH
Confidence 6543332222 221 11112 445566667777777777663
No 372
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=43.58 E-value=5.6e+02 Score=29.47 Aligned_cols=101 Identities=26% Similarity=0.194 Sum_probs=58.3
Q ss_pred hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc---------hhhhhccccchhhhhhHHHHHH
Q 005005 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS---------QEDVAKLSTLKVECKDLYEKVE 329 (720)
Q Consensus 259 n~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 329 (720)
--.|..|...|-.... ++-+..-.|++.-+.-+.++++||+++... |-||-+++.+..=--.|-..|-
T Consensus 157 kd~L~~dn~~Le~l~~---~n~~~~~~L~~yI~agel~~eel~~~i~~~~~~ka~~~~q~~v~~v~~~~~~~~~L~qRv~ 233 (386)
T COG3853 157 KDELTRDNKMLELLYE---KNREYFEHLEKYIAAGELKDEELETEIIPELKTKAESGNQMDVQQVNELTLFINRLEQRVY 233 (386)
T ss_pred hHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666655443 345677789999999888999998765432 3334444444332222334444
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 005005 330 NLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (720)
Q Consensus 330 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l 362 (720)
.|+..+-=|-..+-|--++-.-|++|.+||+..
T Consensus 234 Dl~~a~~Va~Q~apqirliq~~N~~L~~kI~sa 266 (386)
T COG3853 234 DLLLARMVALQTAPQIRLIQRNNQELIEKIQSA 266 (386)
T ss_pred HHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHH
Confidence 444444444444444444455678888888763
No 373
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.57 E-value=4.6e+02 Score=30.40 Aligned_cols=134 Identities=31% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhh-hhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccc
Q 005005 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (720)
Q Consensus 158 ~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (720)
+++|+.|+.----|+..+..|+.++-.-=.=|--+-| |+.+.+.||+||..+. ||-|
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlt-eLqQ--------------------- 323 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLT-ELQQ--------------------- 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH---------------------
Q ss_pred ccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 005005 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST 316 (720)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~ 316 (720)
|.|.-||++|... +||+.-.--||+ ||++.-+..-|.-++||.-
T Consensus 324 ---------------------------nEi~nLKqElasm---eervaYQsyERa------RdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 324 ---------------------------NEIANLKQELASM---EERVAYQSYERA------RDIQEALESCQTRISKLEL 367 (455)
T ss_pred ---------------------------HHHHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhH-HHHHHH--HHHHHHHHhhhhhhHHHHh
Q 005005 317 LKVECKDL-YEKVEN--LQGLLAKATKQADQAISVL 349 (720)
Q Consensus 317 ~~~~~~~~-~~~~~~--l~~~l~~~~~~~~~~~~~~ 349 (720)
.+.+-.-. -|-++| -+.||.++-|-.=.-..||
T Consensus 368 ~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~Vl 403 (455)
T KOG3850|consen 368 QQQQQQVVQLEGLENAVARRLLGKFINIILALMTVL 403 (455)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
No 374
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=43.25 E-value=4e+02 Score=27.65 Aligned_cols=181 Identities=19% Similarity=0.313 Sum_probs=92.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc-cccchhhhhhHHHHHHHHHHHHHHHhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK-LSTLKVECKDLYEKVENLQGLLAKATK 340 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 340 (720)
|+..+...-++.....-|++.+-.--+.|+.|.+-.+.|+.+-...-..+++ +...+-.||. |...++.+.+
T Consensus 20 lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~-------l~~~i~~~~~ 92 (215)
T PF07083_consen 20 LKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKE-------LIAPIDEASD 92 (215)
T ss_pred HHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-------HHHHHHHHHH
Confidence 4555666666666677788888888899999988888888765544333322 3333444444 4444444444
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHhHhh-hhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 005005 341 QADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (720)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (720)
..+.-+-...+ +.-..|.+.+.+-+++.. -|.+....+.. ....+-.--=-.+...-++|.+.|.-.....++..
T Consensus 93 ~I~~~ik~~Ee-~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~---~~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~ 168 (215)
T PF07083_consen 93 KIDEQIKEFEE-KEKEEKREKIKEYFEEMAEEYGVDPEPFER---IIKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIK 168 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHhh---hcchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 344556677766665432 23333332221 11111110011112233344444443333333333
Q ss_pred HHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhcccC
Q 005005 420 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKL 462 (720)
Q Consensus 420 ~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~i 462 (720)
.....+.+. +.. -.||++-|.++|= +++.+...+
T Consensus 169 ~~~~~i~~~----A~~---~~l~~~~yi~~l~--~g~~l~eil 202 (215)
T PF07083_consen 169 AAKQAIEEK----AEE---YGLPADPYIRMLD--YGKTLAEIL 202 (215)
T ss_pred HHHHHHHHH----HHH---cCCCcHHHHHHHH--cCCCHHHHH
Confidence 322222222 111 5699999998776 445554443
No 375
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=42.80 E-value=98 Score=28.19 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=48.4
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR-SDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 358 ~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
|+||+.+-++.+. +|+ .-+|.|+|.||.+.++ -+.||..-|+-|.=+..++...|...+.
T Consensus 2 KleKi~~eieK~k------~Ki----ae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 2 KLEKIRAEIEKTK------EKI----AELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred hHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 6777777777664 455 5678899999988765 4789999999999999999999988876
No 376
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.78 E-value=19 Score=32.44 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.4
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhh
Q 005005 252 LDSLKTENLSLKNDIKVLKAELNSVKD 278 (720)
Q Consensus 252 ~~~~~~en~~~k~~~~~~k~~~~~~~~ 278 (720)
++.|.+||.-||..|+.|+++|...+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999988877543
No 377
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.56 E-value=7.5e+02 Score=30.60 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHH----HHHHHH-HHHHhhhhhhHHHhhhhch
Q 005005 152 EARVQALED----LHKILQ-EKEALQGEINALEMRLAET 185 (720)
Q Consensus 152 ~~r~~a~~~----~~~~~~-ek~~lq~~~~~l~~~l~e~ 185 (720)
+-+..++++ |+.-.+ .+..+++.++|++....++
T Consensus 61 ~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~ 99 (716)
T KOG4593|consen 61 KSLLMQLEDELMQLQNSHKRAELELTKAQSILARNYEAE 99 (716)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 544332 3456777777777776655
No 378
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=42.35 E-value=4.5e+02 Score=29.32 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005005 382 YNELMQQKMKLLEERLQ 398 (720)
Q Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (720)
--+.++..++.||+|+.
T Consensus 369 N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 369 NMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455555555555554
No 379
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.02 E-value=7.1e+02 Score=30.17 Aligned_cols=237 Identities=22% Similarity=0.290 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 005005 144 EKNILLLNEARVQ----ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (720)
Q Consensus 144 ~~~i~~l~~~r~~----a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (720)
|.-|.+|..-|++ -+|.++..-+|...|..+||.|..-|.|. |.++--|+++.++-..+
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~ek-----------------e~sl~dlkehassLas~ 374 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEK-----------------ESSLIDLKEHASSLASA 374 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 5678888888775 35666666777788888888887755544 33444455554442111
Q ss_pred cccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhh---hhhhhhHHHHHHhhhhhHHhh
Q 005005 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS---VKDADERVVMLEMERSSLESS 296 (720)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~---~~~~~~~~~~~~~e~~~l~~~ 296 (720)
.+-.++.+-++--.|..=+||---|-.++..-+..+++ -.++++++.-||+|++-.+
T Consensus 375 ------------------glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~-- 434 (654)
T KOG4809|consen 375 ------------------GLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYR-- 434 (654)
T ss_pred ------------------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHH--
Confidence 01224445566666777788877777776655555544 3578999999999987654
Q ss_pred HHHHHhhhhcchhhhhccccchhhhhhHH-H---HHHHHH-HHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh
Q 005005 297 LKELESKLSISQEDVAKLSTLKVECKDLY-E---KVENLQ-GLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI 371 (720)
Q Consensus 297 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~-~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~ 371 (720)
..+.-+|+-|-.+-++--||+++- + |+..|. ..++ |. ..+.-+-+++-+.+|-. -..|+++..
T Consensus 435 -----de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kd----qn-kkvaNlkHk~q~Ekkk~--aq~lee~rr 502 (654)
T KOG4809|consen 435 -----DECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD----QN-KKVANLKHKQQLEKKKN--AQLLEEVRR 502 (654)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhh----hh-hHHhhHHHHHHHHHHHH--HHHHHHHHH
Confidence 344567777777777777777762 2 233332 1121 11 12223333333332210 011222222
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
..-+--. ++---+..+-+..||.--|.- .++.+-++.-|+|..|...-|..|.-+..+
T Consensus 503 red~~~d-~sqhlq~eel~~alektkQel-~~tkarl~stqqslaEke~HL~nLr~errk 560 (654)
T KOG4809|consen 503 REDSMAD-NSQHLQIEELMNALEKTKQEL-DATKARLASTQQSLAEKEAHLANLRIERRK 560 (654)
T ss_pred HHhhhcc-hHHHHHHHHHHHHHHHHhhCh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111100 011112334444444433433 346677778888888888777777665443
No 380
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.90 E-value=4.7e+02 Score=28.10 Aligned_cols=45 Identities=9% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHHHHHhhHHh
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSLKEE 428 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 428 (720)
+.|..+|+.++.++..-++++..-+..++.- ..||.++|..+-..
T Consensus 177 ~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~ 222 (240)
T cd07667 177 PKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADK 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665543 34566666665443
No 381
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=41.82 E-value=6.6e+02 Score=29.76 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=54.3
Q ss_pred ccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh----------cch
Q 005005 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS----------ISQ 308 (720)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~----------~~~ 308 (720)
+..++.+|.+.+||..+|-|--.-++|++.+..+ +-.|+.+---+|+..++||+... +++
T Consensus 298 ~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q----------~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~ 367 (554)
T KOG4677|consen 298 IQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQ----------YTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASI 367 (554)
T ss_pred cCCCCcchhHHHHHHHHHhcccccHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhh
Confidence 3567779999999999999999999999887654 34455555666777777776553 345
Q ss_pred hhhhccccchhhhhh
Q 005005 309 EDVAKLSTLKVECKD 323 (720)
Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (720)
..+-.+-+++|||--
T Consensus 368 ~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 368 LNMPLVLTLFYECFY 382 (554)
T ss_pred hhchHHHHHHHHHHH
Confidence 555566677888843
No 382
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.72 E-value=1.5e+02 Score=30.71 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=58.8
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (720)
++|+..|..+|.-|- +.+..|.++++..++.|++|-|-|+.-+- --++-.|+-||+..-+++
T Consensus 78 ~eel~~ld~~i~~l~-----------------ek~q~l~~t~s~veaEik~L~s~Lt~eem-Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 78 DEELQVLDGKIVALT-----------------EKVQSLQQTCSYVEAEIKELSSALTTEEM-QEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHH
Confidence 566666665554443 33445567788889999999888765321 123455788999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHH
Q 005005 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLE 363 (720)
Q Consensus 329 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~ 363 (720)
+++.+-..-.|...-.+ |-...|+-.+.-.|.+
T Consensus 140 ~~~k~g~~~vtpedk~~--v~~~y~~~~~~wrk~k 172 (201)
T KOG4603|consen 140 KNIKAGTNHVTPEDKEQ--VYREYQKYCKEWRKRK 172 (201)
T ss_pred HHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHH
Confidence 99877555555444444 4445555444444433
No 383
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.38 E-value=3.9e+02 Score=27.04 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=61.7
Q ss_pred hcchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHH
Q 005005 260 LSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENL 331 (720)
Q Consensus 260 ~~~k~~~~~~k~~~~~~~----~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 331 (720)
..|+.-|..+...+..+. ..--.-..++++...++..+.+++.+...| ++|.+.---.+. ..+-+.++.|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k--~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK--ADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 334444444444443332 223334567888888888888888886655 556654333222 2466788888
Q ss_pred HHHHHHHhhhhhhHHHHhh----hhHHHHHHHHHHHHHHhHh
Q 005005 332 QGLLAKATKQADQAISVLQ----QNQELRKKVDKLEESLDEA 369 (720)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~----~~~~l~~~~d~l~~~l~~~ 369 (720)
+..++.++.++++.-..+. .-.+++.|.+.|.+....|
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777543332 2234444444444444333
No 384
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=41.37 E-value=99 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH
Q 005005 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~ 368 (720)
+|-+-..+||.+++.+.++.. ..-.++..|.++|+.|-+.++.
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 588889999999988554432 4667888888888888887764
No 385
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=41.18 E-value=5e+02 Score=30.51 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=15.5
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhh
Q 005005 167 EKEALQGEINALEMRLAETDARIR 190 (720)
Q Consensus 167 ek~~lq~~~~~l~~~l~e~~~~~~ 190 (720)
++|+|.+.|..|..|+.++.+++.
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~ 31 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVH 31 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777666655543
No 386
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=41.13 E-value=23 Score=40.62 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.9
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
+-||+.++ |. -.+.--.+...+.++|+++||+|+|+.|..
T Consensus 20 ~~kIl~~~----P~-~~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 20 AARILAVF----PT-PAYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred cccEEEEc----CC-CCCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 35677664 32 135577789999999999999999999963
No 387
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.77 E-value=36 Score=36.12 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=29.4
Q ss_pred ceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VIL 552 (720)
|+|+.|.+ -.||.| .++.+|+-+|++.|..|.+|=
T Consensus 1 M~~iai~s------~kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVS------PKGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CcEEEEec------CCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 77887765 259988 589999999999999999983
No 388
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=40.67 E-value=2.9e+02 Score=25.24 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 353 ~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
+.|..++|.||.++..-.-..-....+..-...|+..-..|.++|..+....
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 3566667777776665443333334444444555555555555555555443
No 389
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.52 E-value=42 Score=32.28 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||.+-..+.+.|.+.||+|.++-+.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccc
Confidence 89999999999999999999987543
No 390
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.08 E-value=78 Score=34.08 Aligned_cols=55 Identities=25% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcC
Q 005005 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQ 230 (720)
Q Consensus 169 ~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
..||.||+.++.+++... |...+. --.+|++|++||......+++ |.+..+-+.+
T Consensus 67 ~~L~~ev~~~~~~~~s~~-~~~~t~-----~~~ie~~l~~l~~~aG~v~V~-G~Gl~ITi~d 121 (247)
T COG3879 67 NTLAAEVEDLENKLDSVR-RSVLTD-----DAALEDRLEKLRMLAGSVPVT-GPGLVITIDD 121 (247)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHhH-----HHHHHHHHHHHHHHhccCCCc-CCcEEEEecC
Confidence 345555555555554433 222222 236788999999999998887 4555544443
No 391
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=39.74 E-value=5.7e+02 Score=28.45 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=9.0
Q ss_pred CCCeEEEEecCCCc
Q 005005 544 KGHLVEIVLPKYDC 557 (720)
Q Consensus 544 lGhEV~VILPkY~~ 557 (720)
.|..|.|.++.|+.
T Consensus 310 ~G~~v~v~~~~~~~ 323 (421)
T TIGR03794 310 PGMSVQITPSTVKA 323 (421)
T ss_pred CCCEEEEEEccccc
Confidence 44677777766653
No 392
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=39.72 E-value=33 Score=38.28 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=27.8
Q ss_pred CceEEEEecccCCccccCCHHHHH--HHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVV--gsLPKALa~lGhEV~VILPkY 555 (720)
+|||++++ .|..|++. -+|.++|++.||+|+.+++..
T Consensus 1 ~mkil~~~--------~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~ 39 (406)
T COG1819 1 RMKILFVV--------CGAYGHVNPCLALGKELRRRGHEVVFASTGK 39 (406)
T ss_pred CceEEEEe--------ccccccccchHHHHHHHHhcCCeEEEEeCHH
Confidence 58999885 24466664 466788999999999997653
No 393
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.40 E-value=2.2e+02 Score=30.27 Aligned_cols=85 Identities=11% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 005005 268 VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAIS 347 (720)
Q Consensus 268 ~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 347 (720)
.+..++..+.+++.+|..+++|...|...=...+..|..-++|+..|...-- ..|..-+. .-+.+..
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk---qa~~er~~----------~~~~i~r 85 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK---QAESERNK----------RQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----------HHHHHHH
Confidence 3455666777777888888888888888877788888777888765332211 12222111 1222333
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 005005 348 VLQQNQELRKKVDKLEES 365 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~ 365 (720)
...+..-|.+.||++..+
T Consensus 86 ~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777777777555
No 394
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.12 E-value=44 Score=36.62 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=40.4
Q ss_pred CCCCCCceEEEEecccCCccccCCHHH--HHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 506 SSISSGLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 506 ~~k~~~MKILfVSSE~aPfAKVGGLGD--VVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
+..+.+..|+.|.. +.+||-|- +|-.|.+.|+++|+.|.|+..+|+.-
T Consensus 29 ~~~~~~vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 29 KSYRLPVPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred ccCCCCCcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 34566777888875 67899885 89999999999999999999999864
No 395
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.85 E-value=1.7e+02 Score=26.74 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh-------HhhhhhhhHhhhHHHHHHHHHHhhhcccCcc
Q 005005 149 LLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIR-------VAAQEKIHVELLEDQLQKLQHELTHRGVSEH 221 (720)
Q Consensus 149 ~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (720)
+.......+.++.+.|+.| ..++.++|.|+.=..++..|-. +......-.+++..+|--.+..-..
T Consensus 11 ~~~~l~~~~~~Ef~~I~~E-r~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~------ 83 (109)
T PF03980_consen 11 MIEFLEENCKKEFEEILEE-RDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKERE------ 83 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHH------
Q ss_pred cchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHH
Q 005005 222 SELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAE 272 (720)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~ 272 (720)
.|...++.+..||..|.+.|+.++++
T Consensus 84 -------------------------~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 84 -------------------------QLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhhcC
No 396
>PRK13411 molecular chaperone DnaK; Provisional
Probab=38.28 E-value=1.6e+02 Score=35.13 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 005005 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 304 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~ 304 (720)
.++|+.++.++...++.|+....++.-+..||+-+-+++.++
T Consensus 504 ~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 545 (653)
T PRK13411 504 SNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545 (653)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444444555444444444
No 397
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.18 E-value=60 Score=38.62 Aligned_cols=35 Identities=6% Similarity=0.039 Sum_probs=21.6
Q ss_pred CCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEE-EEecC
Q 005005 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC-FTCHN 678 (720)
Q Consensus 638 g~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptV-FTIHN 678 (720)
..+|||||+|+-.+.+.+ .+... +.++|++ .|+|.
T Consensus 278 ~~rpDIVHt~~~~a~l~g-~laA~-----lagvpviv~~~h~ 313 (578)
T PRK15490 278 ERKLDYLSVWQDGACLMI-ALAAL-----IAGVPRIQLGLRG 313 (578)
T ss_pred HcCCCEEEEcCcccHHHH-HHHHH-----hcCCCEEEEeecc
Confidence 469999999997765542 22111 2357775 45775
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.97 E-value=5.5e+02 Score=31.54 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=16.3
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHh
Q 005005 343 DQAISVLQQNQELRKKVDKLEESLD 367 (720)
Q Consensus 343 ~~~~~~~~~~~~l~~~~d~l~~~l~ 367 (720)
|..-.+.+....|.++++++-.++.
T Consensus 600 eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345667778888888777764
No 399
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.88 E-value=2e+02 Score=31.46 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=21.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~ 280 (720)
.+..++..+.+|.-++++.+.....+|.....|.
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455666677777777777777777776665553
No 400
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.84 E-value=8.2e+02 Score=29.69 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh-hhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 005005 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (720)
Q Consensus 321 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (720)
|++.++..-+...-+.+ ++++=...-..++ +++..|.+-...++. -|+.+-+++..--.-..+++-.+.++||.
T Consensus 108 ~~~~~~~~~~~~~~~~~---~~e~e~~~~~~k~--~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~ 182 (611)
T KOG2398|consen 108 AKDTYEVLCAKSNYLHR---CQEKESLKEKEKR--KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQE 182 (611)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhhhcccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444333333 4444433333333 677777766665553 46666666655556667777777777776
Q ss_pred chh----hHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 005005 400 SDE----EIHSYVQLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 400 ~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (720)
-.+ .++.-+.+|+..+.+-....+..-++=
T Consensus 183 ~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~ 216 (611)
T KOG2398|consen 183 IEESRLSFLKEELWLFANQISESCVKIDQVMEEF 216 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 544 466667778777665554444444333
No 401
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=37.74 E-value=12 Score=43.31 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=21.6
Q ss_pred EEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 643 IIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 643 IIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
|-|.|.|++|...++.... ...+.||||.|..
T Consensus 177 VahFHEW~AGVgL~l~R~r-----rl~iaTifTTHAT 208 (692)
T KOG3742|consen 177 VAHFHEWQAGVGLILCRAR-----RLDIATIFTTHAT 208 (692)
T ss_pred HHHHHHHHhccchheehhc-----ccceEEEeehhHH
Confidence 4599999998753333221 1357889999965
No 402
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=37.66 E-value=56 Score=35.44 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=13.9
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSV 276 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~ 276 (720)
.++..-|+.|.--.|+|+..++......
T Consensus 215 r~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 215 RNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3444445555555555555555554443
No 403
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.64 E-value=56 Score=32.31 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=41.1
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchh
Q 005005 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQE 309 (720)
Q Consensus 253 ~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~--~~~~e~~~l~~~~~~~e~~~~~~~~ 309 (720)
.....|...|+.+|..+|.|++.+--.||+.. +|++...-+++.|+.+.......+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999998764 5666666677766666666555444
No 404
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=37.57 E-value=1.3e+02 Score=29.61 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=20.8
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHHHHHHHHHHHHHhhhhhh
Q 005005 293 LESSLKELESKLSISQEDVAKLSTLKVECKDL-YEKVENLQGLLAKATKQADQ 344 (720)
Q Consensus 293 l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~ 344 (720)
-+++++.|++.+..-.-=+.++..+..|.-.- .+..+.|..+|.+|.+=+++
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k 84 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEK 84 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34444555554443333333333333332222 34444444444444443333
No 405
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=37.27 E-value=3.6e+02 Score=25.37 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005005 383 NELMQQKMKLLEERL 397 (720)
Q Consensus 383 ~~~~~~~~~~~~~~~ 397 (720)
.+.|-.++..+.+++
T Consensus 161 ~~~l~~~~~~l~~~l 175 (202)
T PF01442_consen 161 RESLEEKAEELKETL 175 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444444
No 406
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.06 E-value=5.1e+02 Score=27.06 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 005005 377 EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEE 428 (720)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 428 (720)
+.++.||+.++..+...+..+....++|.+--.+.++.+--...+++.|+.-
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577777777777777777777777776666666666666666666543
No 407
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=37.01 E-value=1.1e+03 Score=31.12 Aligned_cols=147 Identities=24% Similarity=0.271 Sum_probs=70.5
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH----HHHhhhhcchhhhhccccchhhhhhHHHHHHHHH----H
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK----ELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ----G 333 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ 333 (720)
.--+|+-+..+|..--+..-.+..+-+|.+.+..++. ++|+..-..+++.-.++-++- +|..+.+.+ .
T Consensus 800 ~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~----~~~e~k~~~~~~~~ 875 (1294)
T KOG0962|consen 800 REKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLIN----LRNELKEEKQKIER 875 (1294)
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3456777777777755555556666777777555554 444444444444444444332 443333333 3
Q ss_pred HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 005005 334 LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM-QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (720)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (720)
.|....+--++... |+ -+....+-++.++++...--+.+.+.. ..|.+++.++=- -++-.|...++|++++....
T Consensus 876 ~l~~~~qle~~~~~-l~--e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~~s~l~ 951 (1294)
T KOG0962|consen 876 SLARLQQLEEDIEE-LS--EEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINEKVSLLH 951 (1294)
T ss_pred HHHHHHhhHHHHHH-HH--HHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 33333322222211 11 122223334444444444344443333 334444444322 55556677777777766655
Q ss_pred HHHH
Q 005005 413 ESVK 416 (720)
Q Consensus 413 ~~~~ 416 (720)
..++
T Consensus 952 ~~~~ 955 (1294)
T KOG0962|consen 952 QIYK 955 (1294)
T ss_pred HHHH
Confidence 5443
No 408
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=36.72 E-value=63 Score=34.33 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCCC-cEEEECchhhhh---HHHHHHHhhCcCCCCCCCEEEEecCCCcc
Q 005005 638 GKQP-DIIHCHDWQTAF---VAPLYWDLYVPKGLNSARVCFTCHNFEYQ 682 (720)
Q Consensus 638 g~kP-DIIHcHDWHTAL---VaPLyLk~y~~~gf~~iptVFTIHNLaYQ 682 (720)
+.+| ||||+|- ++-+ .+..++..... .++|+|++||.+.+.
T Consensus 61 ~~~~~Dvv~~~~-P~~~~~~~~~~~~~~~k~---~~~k~i~~ihD~~~~ 105 (333)
T PRK09814 61 SLKPGDIVIFQF-PTWNGFEFDRLFVDKLKK---KQVKIIILIHDIEPL 105 (333)
T ss_pred cCCCCCEEEEEC-CCCchHHHHHHHHHHHHH---cCCEEEEEECCcHHH
Confidence 4677 9999987 2211 10111111111 258999999988654
No 409
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.16 E-value=6.6e+02 Score=28.10 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.5
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~ 281 (720)
+|..-+..-|+||..|.-|.++|..++.+....-+
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~e 121 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCE 121 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHH
Confidence 56777888999999999999999988776654443
No 410
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=36.15 E-value=5.1e+02 Score=26.86 Aligned_cols=99 Identities=27% Similarity=0.434 Sum_probs=51.4
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH---HHhh-----hhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHH
Q 005005 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI---SVLQ-----QNQELRKKVDKLEESLDEANIYKLSSEKMQQYN 383 (720)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~-----~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~ 383 (720)
++|+..+--|.-|=...+..+.++.+|.+.-..+. ..|+ .+-+++-|.+||+-.=.| +-+|..--
T Consensus 64 ~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E-------~~rLt~~Q 136 (178)
T PF14073_consen 64 SQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKE-------YLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 45555666788888889999999988765433221 1111 133455444444321111 12222222
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (720)
-+-.-||+.||++|++--++ =.+.|+--.++|--
T Consensus 137 ~~ae~Ki~~LE~KL~eEehq----RKlvQdkAaqLQt~ 170 (178)
T PF14073_consen 137 SLAETKIKELEEKLQEEEHQ----RKLVQDKAAQLQTG 170 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 33446778888887754332 23344444455543
No 411
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.93 E-value=43 Score=30.68 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=39.0
Q ss_pred hhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHh
Q 005005 172 QGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE 251 (720)
Q Consensus 172 q~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (720)
++||.-+|.+++..-.++....----..+|-.+.-+.|-+|+..- ...++..-++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l-------------------------~~~l~~~E~e 58 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNEL-------------------------KEKLENNEKE 58 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHH-------------------------HHHhhccHHH
Confidence 466777777777776666554444444555555555555554431 2224455788
Q ss_pred hhhhhhhhh
Q 005005 252 LDSLKTENL 260 (720)
Q Consensus 252 ~~~~~~en~ 260 (720)
|..||.||.
T Consensus 59 L~~LrkENr 67 (85)
T PF15188_consen 59 LKLLRKENR 67 (85)
T ss_pred HHHHHHhhh
Confidence 999999985
No 412
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.74 E-value=5.3e+02 Score=26.91 Aligned_cols=169 Identities=21% Similarity=0.311 Sum_probs=78.6
Q ss_pred hhcchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHHHHHhhhhcchh-hhhccccchhhhhhHHHHHHHHHH
Q 005005 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLKELESKLSISQE-DVAKLSTLKVECKDLYEKVENLQG 333 (720)
Q Consensus 259 n~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~----~~l~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 333 (720)
|..++.+|+.++.-|..-+++|..+...=... ..|.....+|++.+-.++. +.......--..+.+-.+|+.|..
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~ 158 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKK 158 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999888888777654443 3467777778777766551 111111111112223333333333
Q ss_pred HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH--HHhHhhhhhhchHHHHHHHHHHHH----------HHHHHHHHHh---
Q 005005 334 LLAKATKQADQAISVLQQNQELRKKVDKLEE--SLDEANIYKLSSEKMQQYNELMQQ----------KMKLLEERLQ--- 398 (720)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~--~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--- 398 (720)
--...-++..++ + ++.++-+.+..+.. +-....++.--..|.+.+...+++ .++..-++|.
T Consensus 159 eR~~~~~~lk~~---~-~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~ 234 (296)
T PF13949_consen 159 EREELLEQLKEK---L-QNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR 234 (296)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH---H-hhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222221 1 23343333332221 111122222222222222222222 2333333331
Q ss_pred hc---hhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 399 RS---DEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 399 ~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
.+ ..+.+++++-+..+.+.|.+...+|.+-.+.
T Consensus 235 ~~~~~~~~r~~~~~~l~~a~~~y~el~~~l~eG~~F 270 (296)
T PF13949_consen 235 KSDQEQKERESALQRLEAAYDAYKELSSNLEEGLKF 270 (296)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11 2456777888888888888887777765543
No 413
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=35.70 E-value=3.4e+02 Score=30.50 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHhhhhchhh
Q 005005 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEIN--ALEMRLAETDA 187 (720)
Q Consensus 133 ~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~--~l~~~l~e~~~ 187 (720)
+.-|-+++.|-+.|+..+- +|-.++..++...+..+++-+ +|..|++-++|
T Consensus 85 ~~~iKsvFSne~qdl~~Mk----~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEA 137 (323)
T PF08537_consen 85 WSSIKSVFSNEEQDLTRMK----NACTNINSRLPNRERKSGREERRLLKDRILRSEA 137 (323)
T ss_pred HHHHHHHhCccHHHHHHHH----HHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHH
Confidence 4556667777777776553 356678888888777776655 67777666644
No 414
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=35.66 E-value=5.7e+02 Score=27.23 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=48.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHH---HHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHHH
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNE---LMQQKMKLLEERLQRSDEEIHSYVQLYQ-ESVKEFQDTLH 423 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 423 (720)
+.++.|+++..+.+-++.++.-.- ...++|+++... -+++|+...+.+|+....-|..-+.-|+ +-+++|..++.
T Consensus 131 ~~~~~~~~~~~l~kKr~~~~Kl~~-~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~ 209 (234)
T cd07665 131 TWQRWQDAQAMLQKKREAEARLLW-ANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHII 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444333211 124677776543 4567888899999988888888776665 45777777665
Q ss_pred hhHH
Q 005005 424 SLKE 427 (720)
Q Consensus 424 ~~~~ 427 (720)
.--+
T Consensus 210 ~fle 213 (234)
T cd07665 210 KYLE 213 (234)
T ss_pred HHHH
Confidence 5443
No 415
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.21 E-value=3.5e+02 Score=29.22 Aligned_cols=91 Identities=12% Similarity=0.228 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhh----------hhHHHHHHHHHHHHHHh------HhhhhhhchHHHHHHHHHHHH
Q 005005 325 YEKVENLQGLLAKATKQADQAISVLQ----------QNQELRKKVDKLEESLD------EANIYKLSSEKMQQYNELMQQ 388 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~~~~~~~~~----------~~~~l~~~~d~l~~~l~------~~~~~~~~~~~~~~~~~~~~~ 388 (720)
-.+|++.+.=+|.+..+..+|.-.++ ..++||..+++.+++++ ++..|.|-...+ |...+
T Consensus 127 RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~----e~~~~ 202 (248)
T cd07619 127 RKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEI----DYANY 202 (248)
T ss_pred HHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHH
Confidence 46788888888888888877754322 24799999999999999 555555544332 11111
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 005005 389 KMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (720)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (720)
--+=|.+|+.-|+.+.+-.+..+..|+...+
T Consensus 203 -----------l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 203 -----------FQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123566777777777777776666665544
No 416
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=35.10 E-value=8.2e+02 Score=28.92 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=16.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHH
Q 005005 343 DQAISVLQQNQELRKKVDKLEES 365 (720)
Q Consensus 343 ~~~~~~~~~~~~l~~~~d~l~~~ 365 (720)
+.|..+-|.|..+.+++|||+..
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888754
No 417
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.96 E-value=33 Score=27.79 Aligned_cols=27 Identities=44% Similarity=0.625 Sum_probs=13.8
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAEL 273 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~ 273 (720)
+|..+.+.|+.||-.|+..+..|+.++
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555443
No 418
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=34.96 E-value=9.8e+02 Score=29.75 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
|..+..+|++.+..|+.+..--+-++|.-.-.+.-|.....++..|...+.+
T Consensus 386 qea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~R 437 (739)
T PF07111_consen 386 QEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNR 437 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456678888888888877666667765555555555555555555555444
No 419
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=34.89 E-value=5.2e+02 Score=26.56 Aligned_cols=91 Identities=19% Similarity=0.361 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHH-Hhhh-hHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 323 DLYEKVENLQGLLAKATKQADQAIS-VLQQ-NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~-~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
++|+--.+-=.+...++|+.+++-+ +|-| +.-+-+.|+.|+..+..- +.. .+++.++.+|.|-. ..
T Consensus 12 a~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~--~~~-------~s~~~~~~vk~L~k---~~ 79 (165)
T PF09602_consen 12 AFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQF--KRE-------FSDLYEEYVKQLRK---AT 79 (165)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHH---HH
Confidence 5688888887888888999988743 3333 333677788888888764 333 33455555665533 45
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 005005 401 DEEIHSYVQLYQESVKEFQDTLHSL 425 (720)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (720)
.+.+..+|.-|+.-.+|.-.-++.|
T Consensus 80 ~~~l~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 80 GNSLNDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666555544433
No 420
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=34.74 E-value=64 Score=31.50 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=29.7
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
+++|++|+ .|=+.|+.+|..+++..|.+|+++.|..
T Consensus 2 gl~i~~vG---------D~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVG---------DGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEES---------STTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEEC---------CCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 56777763 1337999999999999999999999975
No 421
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=34.73 E-value=64 Score=30.59 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=35.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESS 296 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~ 296 (720)
+|-.||+-+|||-..+|.|+++-+.....++ |.++-.||--.-||..
T Consensus 68 alcdefdmikee~~emkkdleaankrve~q~---ekiflmekkfe~lekk 114 (122)
T PF05325_consen 68 ALCDEFDMIKEETIEMKKDLEAANKRVESQA---EKIFLMEKKFETLEKK 114 (122)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHH
Confidence 6788999999999999999999887665544 5666666655555543
No 422
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.65 E-value=50 Score=33.50 Aligned_cols=51 Identities=37% Similarity=0.528 Sum_probs=19.7
Q ss_pred hhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhh
Q 005005 133 LDNLISMIR-NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI 197 (720)
Q Consensus 133 ~~~~~~~~~-~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~ 197 (720)
||||=.+.- -.|+|.+|=++ |.|||.|+-+++-|.--+. |-++.++.|++.
T Consensus 2 LeD~EsklN~AIERnalLE~E------------LdEKE~L~~~~QRLkDE~R--DLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESE------------LDEKENLREEVQRLKDELR--DLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 566666553 34666665433 3788888888877766665 334444555544
No 423
>PLN03188 kinesin-12 family protein; Provisional
Probab=34.42 E-value=6.5e+02 Score=33.16 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc--------
Q 005005 145 KNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-------- 216 (720)
Q Consensus 145 ~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (720)
|.|.|--+.|+ +|+.-..--|.|+-|+..=++=-.|.+.-|..|.+|-.|.==--.+|+..-+.|..+
T Consensus 1062 ~wislteelr~----eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi 1137 (1320)
T PLN03188 1062 KWISLAEELRT----ELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGI 1137 (1320)
T ss_pred hheechHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhh----hhcchhHHHHHHHHhhhhhhhhhH
Q 005005 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADER 282 (720)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----n~~~k~~~~~~k~~~~~~~~~~~~ 282 (720)
|+-. ...-.+.+|.-|+..||-| ..-||+.=..|+.+|.+.||.-.
T Consensus 1138 ~dvkkaaakag~kg-------------------~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~- 1197 (1320)
T PLN03188 1138 DDVKKAAARAGVRG-------------------AESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ- 1197 (1320)
T ss_pred HHHHHHHHHhcccc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH-
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 005005 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (720)
Q Consensus 283 ~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l 362 (720)
+-=|-+=.|..-=..+|---+.|..+-|.|..+-+++|||
T Consensus 1198 ----------------------------------------aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1198 ----------------------------------------AAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 005005 363 E 363 (720)
Q Consensus 363 ~ 363 (720)
+
T Consensus 1238 k 1238 (1320)
T PLN03188 1238 K 1238 (1320)
T ss_pred H
No 424
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=34.32 E-value=1.2e+02 Score=35.58 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 619 DFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 619 DaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
+..+|.-++++.++.+...-..=|+|=.||.|=-|+ |.+++.- ..+.++.|++|-.
T Consensus 126 ~w~~Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~-P~mlR~~----~~~~~IgfFlHiP 181 (486)
T COG0380 126 WWDAYVKVNRKFADKIVEIYEPGDIIWVHDYHLLLV-PQMLRER----IPDAKIGFFLHIP 181 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEechhhhh-HHHHHHh----CCCceEEEEEeCC
Confidence 456777777777777665433349999999999998 6666432 2356899999965
No 425
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=34.28 E-value=1.7e+02 Score=29.10 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=59.1
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH--------HH-HHHHhHhhhhhhchHH
Q 005005 308 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD--------KL-EESLDEANIYKLSSEK 378 (720)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d--------~l-~~~l~~~~~~~~~~~~ 378 (720)
...+-+|+|++.=|.++..|.+.|+.++..... .+..|++ -|+--|| +. +.-|..........+.
T Consensus 55 ~~~~~~lsPie~Aie~i~~k~~eL~~~~~~~~~----~~~~L~~--~L~G~v~a~VngG~~~y~~~Fl~~~~~~~~~~~~ 128 (178)
T PF06920_consen 55 SKEEIELSPIENAIEDIEKKNKELEELINSYKP----NINPLQM--LLQGSVDAAVNGGPSKYAEAFLSPEYLHPEDKEL 128 (178)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHHHHHHHHHHSSS-----HHHHHH--HHHHHHS-SSS-TTHHHHHHHSSCHHCSHCCHHH
T ss_pred ccCcEEcCHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHH--HhcccccccccCchHHHHHHHcCccccCcccHHH
Confidence 345668999999999999999999988877541 1111111 1111111 11 2333333334555667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 005005 379 MQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 416 (720)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (720)
++++.+.+.+.+..+++-|..-..=+.....-|++.++
T Consensus 129 ~~~L~~~~~~~~~~~~~~L~~h~~~~~~~~~~lh~~le 166 (178)
T PF06920_consen 129 VEKLKEAFIDQLIVLERALELHKKLCSPEQRPLHEELE 166 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHH
Confidence 77888888888888888877655544443333444333
No 426
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=34.07 E-value=7.9e+02 Score=28.90 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=59.7
Q ss_pred cCChhHHHHHHHHHHhhcCc---------chhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecccCCcccc-CCH
Q 005005 461 KLSTSEAKLLREMVWKRNGR---------IRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKV-GGL 530 (720)
Q Consensus 461 ~i~~~~as~lr~~v~~~~~~---------~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~aPfAKV-GGL 530 (720)
.....+++.+.+-+|.+... +.+.|..+.+.....-...+....++......-+++|...+... .. +-+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~-~~~~~~ 464 (654)
T COG1199 386 VLPLLVPSKLLEELFSKVASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEP-REPELL 464 (654)
T ss_pred EeecccHHHHHHHHHhhcCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCC-CChHHH
Confidence 35566788899889987542 33444333222211111122333344333334457777665543 33 678
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCccc
Q 005005 531 GDVVAGLGKALQKKGHLVEIVLPKYDCMQ 559 (720)
Q Consensus 531 GDVVgsLPKALa~lGhEV~VILPkY~~I~ 559 (720)
.+++..+-..+...+-.+.|+.|.|..+.
T Consensus 465 ~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~ 493 (654)
T COG1199 465 AKLAAYLREILKASPGGVLVLFPSYEYLK 493 (654)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccHHHHH
Confidence 88888888888888779999999997663
No 427
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=34.07 E-value=69 Score=31.45 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=28.2
Q ss_pred ceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEE
Q 005005 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VI 551 (720)
|||+.|++- .||-| .++..|+.+|++.|+.|.+|
T Consensus 17 ~kvI~v~s~------kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 17 IKVLLITSV------KPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CcEEEEecC------CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 898888752 46655 48999999999999999887
No 428
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=33.98 E-value=77 Score=32.74 Aligned_cols=36 Identities=14% Similarity=-0.012 Sum_probs=29.0
Q ss_pred CceEEEEecccCCccccCCHHHHH--HHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVV--gsLPKALa~lGhEV~VILPk 554 (720)
++||+.. -+||.|-+= -.|-+.|.+.|++|+||+-.
T Consensus 5 ~k~Illg--------VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 5 GKRIGFG--------LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCEEEEE--------EcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 4566643 379999885 69999999999999999754
No 429
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.98 E-value=60 Score=34.47 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
..|||++| |.|.+-+.+..+|++.||+|+++...
T Consensus 4 ~~m~I~Ii-----------G~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGII-----------GTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEE-----------CCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 34888877 44555566667899999999999864
No 430
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.83 E-value=2.1e+02 Score=25.85 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 147 i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
|+-|.+.|..+...++...+++-.+..+|..+...=.+.++-+.-+..-+-.+.-+|.++..+..++..
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888888777766544444444444444455556666666666666544
No 431
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=33.66 E-value=6.1e+02 Score=26.94 Aligned_cols=81 Identities=30% Similarity=0.377 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccc
Q 005005 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANED 237 (720)
Q Consensus 158 ~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (720)
++.|+..|+-..+--.+-..||+||-- =||.+|+.||..=.+.+...+
T Consensus 5 v~~LQ~AL~~LQaa~ekRE~lE~rLR~----------------~lE~EL~~lr~qq~~~~~~~~---------------- 52 (205)
T PF12240_consen 5 VERLQQALAQLQAACEKREQLERRLRT----------------RLERELESLRAQQRQGNSSGS---------------- 52 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhccCCCCCC----------------
Confidence 456666666665555666677777632 278889999865444322210
Q ss_pred cccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHh
Q 005005 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLES 295 (720)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~ 295 (720)
+ ..+ .++..|+..| .|-+|+|..||-|..-.+.
T Consensus 53 -----~-~~~----------------~~~~~L~~~L---rEkEErILaLEad~~kWEq 85 (205)
T PF12240_consen 53 -----S-SPS----------------NNASNLKELL---REKEERILALEADMTKWEQ 85 (205)
T ss_pred -----C-CCC----------------CcHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 0 001 4556666664 4568888888877665444
No 432
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.65 E-value=6.7e+02 Score=27.48 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhh-hhhhHhhhHHHHHHH
Q 005005 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIHVELLEDQLQKL 209 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~-~~~~~~~~~~~~~~~ 209 (720)
.++++..+...++++|+.++..+.+....|+...+ =+-+-+++++++..+
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666666654432 122445666665544
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=33.64 E-value=8.6e+02 Score=28.71 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=29.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh---hhHHHHHHhhhhhHHhhH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDA---DERVVMLEMERSSLESSL 297 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~---~~~~~~~~~e~~~l~~~~ 297 (720)
.+..++..++.......+.+++|+-++.++... ..--..|+.|+..|..+-
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e 221 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSG 221 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 445666666666666666667776655554433 233445666666554443
No 434
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=33.50 E-value=4.7e+02 Score=27.39 Aligned_cols=78 Identities=28% Similarity=0.335 Sum_probs=50.6
Q ss_pred HhhhhHHHHHHHHH-HHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHH----HHH
Q 005005 348 VLQQNQELRKKVDK-LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD-EEIHSYVQLYQESVKEF----QDT 421 (720)
Q Consensus 348 ~~~~~~~l~~~~d~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 421 (720)
.|.+.| ++-||. |+.||.=+-++--.-+-+ -.|.+-+..|..-+++.| .++.+.|+-|-.+-|.. ...
T Consensus 25 al~~~~--~k~ve~lLd~sL~LLD~c~~~rd~l----l~lKe~v~eLqsalRRr~~~~~~~~i~sy~~~rKk~kK~i~K~ 98 (231)
T PF03087_consen 25 ALSHHQ--EKWVEELLDGSLRLLDACGTFRDAL----LQLKEHVQELQSALRRRDDGSIESEIASYIRSRKKAKKEIAKL 98 (231)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 677775 788998888876666644 677788888998899888 44555555555555444 444
Q ss_pred HHhhHHhhhh
Q 005005 422 LHSLKEESKK 431 (720)
Q Consensus 422 l~~~~~~~~~ 431 (720)
+..+|.-..+
T Consensus 99 ~~~lk~~~~~ 108 (231)
T PF03087_consen 99 LRSLKRMSNK 108 (231)
T ss_pred HHHHHhhhcc
Confidence 4444544443
No 435
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=33.36 E-value=59 Score=33.22 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=27.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
||||...-- |=-+.-...|.++|.+.||+|.|+.|....-
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDD-------GIDAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCC-------CCCCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 666665432 1123346778888988899999999987543
No 436
>PLN02686 cinnamoyl-CoA reductase
Probab=33.27 E-value=1.3e+02 Score=32.67 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 59 TGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 59 TGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 688888889999999999999988754
No 437
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=33.23 E-value=4.4e+02 Score=25.15 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhH----HHHHHHH-------HHHHHHhHhhhhhhchH---HHHHHHHHHHHHHHHHHH
Q 005005 330 NLQGLLAKATKQADQAISVLQQNQ----ELRKKVD-------KLEESLDEANIYKLSSE---KMQQYNELMQQKMKLLEE 395 (720)
Q Consensus 330 ~l~~~l~~~~~~~~~~~~~~~~~~----~l~~~~d-------~l~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 395 (720)
.|+.+|+-+...-|+|...|.+-+ ..+.+++ .....+.+.....++.. ..+.|-+.|.+.|.....
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~ 85 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQL 85 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655554322 2222333 33333333333334444 445667788888888888
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 005005 396 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (720)
.+.....++.-.-+.|.+..++-. ++++|++-.
T Consensus 86 ~v~~~~~~ve~~r~~~~ea~~~~k-~~ekLker~ 118 (146)
T PRK07720 86 LVMQAREQMNRKQQDLTEKNIEVK-KYEKMKEKK 118 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888888877777777766644 577777644
No 438
>PLN02778 3,5-epimerase/4-reductase
Probab=33.18 E-value=74 Score=33.47 Aligned_cols=38 Identities=24% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 505 SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 505 ~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
+.+....||||. |||-|-+=..|.++|.++|++|++..
T Consensus 3 ~~~~~~~~kiLV----------tG~tGfiG~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 3 GTAGSATLKFLI----------YGKTGWIGGLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCCCCCeEEE----------ECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 344566788774 58888888899999999999997643
No 439
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=33.17 E-value=69 Score=35.47 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=38.8
Q ss_pred CCCCceEEEEecccCCccccCCHHH--HHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGD--VVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
.+.+..|+.|.. +.+||-|- +|-.|.+.|+++|+.|.|+..+|+.-
T Consensus 52 ~~~pvPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 99 (338)
T PRK01906 52 VRLGVPVVVVGN-----VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGAK 99 (338)
T ss_pred ccCCCCEEEECC-----ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 455677887765 67999985 78999999999999999999999863
No 440
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.14 E-value=7.1e+02 Score=27.57 Aligned_cols=173 Identities=27% Similarity=0.324 Sum_probs=95.5
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (720)
|-.--|.=-+.+|...+.++.+|.++.+. .+.+|+| |++.|.++|-+...+++++-.|. +|-..+-||.|.
T Consensus 14 E~~ywk~l~~~ykq~f~~~reEl~EFQeg---SrE~Eae---lesqL~q~etrnrdl~t~nqrl~---~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 14 EDQYWKLLHHEYKQHFLQMREELNEFQEG---SREIEAE---LESQLDQLETRNRDLETRNQRLT---TEQERNKEKQED 84 (333)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33334444577888888888888888754 4455554 78888888888888888877654 343345555444
Q ss_pred HHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHH---H---hHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 331 LQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEES---L---DEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 331 l~~~l~~~~~~~~~~~~~~~~----~~~l~~~~d~l~~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
-...-.+ |.++----|.| -..||+-|-+||.. | +.|.||-+ +++.|--..--++..-||.-|.+-
T Consensus 85 q~~q~y~---q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sl--eDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 85 QRVQFYQ---QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSL--EDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333222 22111111111 12344555555431 2 44555543 333333333334555555544321
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhcc--CCCCCCCCHHH
Q 005005 401 DEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAV--HEPVDDMPWEF 445 (720)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~ 445 (720)
+..-+||.+..+--..|..|-..+.. +.|---||++.
T Consensus 160 --------e~llesvqRLkdEardlrqelavr~kq~E~pR~~~Pss~ 198 (333)
T KOG1853|consen 160 --------EVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPSSV 198 (333)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccch
Confidence 22356777777777777777666653 45666788763
No 441
>PLN00016 RNA-binding protein; Provisional
Probab=33.04 E-value=52 Score=35.50 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
..+|+||.++ ...||-|-+-..|.++|.+.||+|+++....
T Consensus 50 ~~~~~VLVt~------~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVN------TNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cccceEEEEe------ccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 3446777553 2347888888889999999999999997653
No 442
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=33.00 E-value=1.9e+02 Score=34.34 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 005005 286 LEMERSSLESSLKELESKLSISQEDVAKLST 316 (720)
Q Consensus 286 ~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~ 316 (720)
++.|...|+..-.|.+.-|..||++.-+|-+
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444555555555556666666655544
No 443
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.90 E-value=64 Score=33.80 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||-|-+-..|.++|.+.||+|+++...
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 6888988889999999999999999754
No 444
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.88 E-value=6e+02 Score=26.64 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=59.8
Q ss_pred HhhhhhhhhhHHHHHHh--------hhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 005005 272 ELNSVKDADERVVMLEM--------ERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD 343 (720)
Q Consensus 272 ~~~~~~~~~~~~~~~~~--------e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 343 (720)
-+...-+|++|...+.. .+.+=+..=+=|+.=-.-+.+|++.+..|-. ++=+||++|+.+++--.+-..
T Consensus 27 ~~~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvi---nlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 27 AIGDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVI---NLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777655432 2333333334455555568899999999877 688999999998887443322
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhH
Q 005005 344 QAISVLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 344 ~~~~~~~~~~~l~~~~d~l~~~l~~ 368 (720)
.-+.|++.+.+.|-++|.-|+.
T Consensus 104 ---~q~eq~~~~~~~v~~~~q~~~~ 125 (189)
T TIGR02132 104 ---AQQEQAPALKKDVTKLKQDIKS 125 (189)
T ss_pred ---HHHhhCchHHhHHHHHHHHHHH
Confidence 3456788888888888876653
No 445
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=32.73 E-value=6.2e+02 Score=26.75 Aligned_cols=114 Identities=20% Similarity=0.171 Sum_probs=58.4
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhh-----hhHHhhHHHHHhhhhcchhhhhccccchhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMER-----SSLESSLKELESKLSISQEDVAKLSTLKVEC 321 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~-----~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 321 (720)
+|...++.++.|...+-+.=..|...|.. +..+.+..+.+|- ...-...+++|+.+..+|....
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~--~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~--------- 129 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLN--DVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWA--------- 129 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHH---------
Confidence 55666677777666544444444443332 1122233332221 0011246677777777776543
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH----HHHHHHHHHHHHHhHhhhh
Q 005005 322 KDLYEKVENLQGLLAKATKQADQAISVLQQNQ----ELRKKVDKLEESLDEANIY 372 (720)
Q Consensus 322 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~l~~~~d~l~~~l~~~~~~ 372 (720)
..|.+|+.-..-...+.+.++.|..-.+... --+++++|++..++.+...
T Consensus 130 -~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~ 183 (258)
T cd07655 130 -KLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQE 183 (258)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777776644333211 1145666666666555433
No 446
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.51 E-value=1.6e+02 Score=27.58 Aligned_cols=45 Identities=33% Similarity=0.552 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 005005 382 YNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (720)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (720)
-.+.|...+..++++++.+..++.. +...+++..+-+..||+|.+
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~----l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEK----LKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 3466777788888888888777766 56667777777777887764
No 447
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.51 E-value=6.6e+02 Score=26.99 Aligned_cols=68 Identities=10% Similarity=0.405 Sum_probs=44.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHhh
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQE-SVKEFQDTLHSL 425 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 425 (720)
|+.+.+..|-.++++++-|... .++ .+.+.+.++.+|++.+.....|+.-++-++. -+.+|..++.+.
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~-----~~d-----r~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~y 222 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANK-----KAD-----RDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDM 222 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777666652 232 2578889999999999998888865555543 344455554443
No 448
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.45 E-value=2.3e+02 Score=30.65 Aligned_cols=92 Identities=34% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 005005 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (720)
Q Consensus 258 en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 337 (720)
|-|-||.|.+.+|.+|.+ +.+|...|-..+.+||+++.+-|+ ..|.+--.-..|...+++
T Consensus 129 ~~~d~ke~~ee~kekl~E----------~~~EkeeL~~eleele~e~ee~~e----------rlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 129 EYMDLKEDYEELKEKLEE----------LQKEKEELLKELEELEAEYEEVQE----------RLKRLEVENSRLEEMLKK 188 (290)
T ss_pred hhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhhhHHHHhhhhHHHHHHHHHHH---HHHhHhhhhhhchHHH
Q 005005 338 ATKQADQAISVLQQNQELRKKVDKLE---ESLDEANIYKLSSEKM 379 (720)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~d~l~---~~l~~~~~~~~~~~~~ 379 (720)
.....-+|+++.|.|+ +++++-.|+++-++.+
T Consensus 189 ----------l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~ 223 (290)
T COG4026 189 ----------LPGEVYDLKKRWDELEPGVELPEEELISDLVKETL 223 (290)
T ss_pred ----------chhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
No 449
>PLN02572 UDP-sulfoquinovose synthase
Probab=32.43 E-value=68 Score=36.03 Aligned_cols=37 Identities=38% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEE
Q 005005 505 SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 505 ~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VI 551 (720)
++++.++|+||. |||-|-+-..|.++|.+.|++|+++
T Consensus 41 ~~~~~~~k~VLV----------TGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 41 SSSSSKKKKVMV----------IGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CCccccCCEEEE----------ECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 444556677652 5788877788999999999999986
No 450
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=32.43 E-value=81 Score=34.47 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=38.5
Q ss_pred CCCCceEEEEecccCCccccCCHHH--HHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGD--VVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGD--VVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
.+.+..|+.|.. +.+||-|- ++-.|.+.|+++|..|-|+..+|+.-
T Consensus 24 ~~~~vPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~ 71 (311)
T TIGR00682 24 KRAPVPVVIVGN-----LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSK 71 (311)
T ss_pred ccCCCCEEEEec-----cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 346677877765 67899885 88999999999999999999999863
No 451
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=32.23 E-value=54 Score=35.12 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=36.7
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||+|+- -|+....--.|-+-.|..|.+++||+|.++.|..
T Consensus 1 m~~~~~~---~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQM---DPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEe---CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 7888884 7888888888999999999999999999999975
No 452
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.22 E-value=3.9e+02 Score=24.35 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (720)
.+...||.-+...+.+-.+.-.-+..|.+..+-+..|+ ..+++|+.--. =++..-+..+...+...-+.+.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~------vfv~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGN------VLVKQEKEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhh------HHhhccHHHHHHHHHHHHHHHH
Confidence 33344444444444343333333444444444333333 56667765443 1334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHh
Q 005005 406 SYVQLYQESVKEFQDTLHSLKEE 428 (720)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~ 428 (720)
+-+.-+...++..+..+..++.+
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 453
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=32.22 E-value=7e+02 Score=27.25 Aligned_cols=194 Identities=21% Similarity=0.235 Sum_probs=94.1
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-LESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 327 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (720)
+.-++.|.+|=..|.+++..+..++.+.+..--..+.--.++.. +..++.+++..+..-...+ . .+|+.
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l---~-------~L~~~ 75 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSL---P-------ELDEA 75 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHH
Confidence 45567788888888888888888888887776666665555443 3334444444433222211 1 23333
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 005005 328 VENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (720)
Q Consensus 328 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (720)
......-.++....-..+..++.+++.|.+=+ .|-..++.+.-...-.|. ..+..-++.|..|+.. ..-++
T Consensus 76 ~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diL-ElP~Lm~~ci~~g~y~eA-----Lel~~~~~~L~~~~~~-~~lv~-- 146 (338)
T PF04124_consen 76 CQRFSSKAQKISEERKKASLLLENHDRLLDIL-ELPQLMDTCIRNGNYSEA-----LELSAHVRRLQSRFPN-IPLVK-- 146 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhcccHhhH-----HHHHHHHHHHHHhccC-chhHH--
Confidence 33333333332223333444444444433211 112222222111111111 2344556666666654 12222
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHH-HHHHHHHhhhhhhcccCChhHHHHHHHHHHhh
Q 005005 408 VQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF-WSRLLLIIDGWLLEKKLSTSEAKLLREMVWKR 477 (720)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-ws~lllrid~~~l~~~i~~~~as~lr~~v~~~ 477 (720)
.+.++....-+..+..|... +..| =.+|.-+ +-..|-|++.+ +++. ||..+...
T Consensus 147 -~i~~ev~~~~~~ml~~Li~~-----L~~~-l~l~~~ik~v~~Lrrl~~~--------~e~~-Lr~~fl~~ 201 (338)
T PF04124_consen 147 -SIAQEVEAALQQMLSQLINQ-----LRTP-LKLPACIKTVGYLRRLPVL--------TESE-LRLKFLQS 201 (338)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-----HcCc-ccHHHHHHHHHHHHHhccc--------cchH-HHHHHHHH
Confidence 23344445556666666553 4555 3455554 55666666433 2333 88877644
No 454
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=3.5e+02 Score=26.40 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccc
Q 005005 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLV 239 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (720)
.++.-+++-..||.++..+.|+...-++.++-.....--.+.+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l------------------------------------- 49 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL------------------------------------- 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------------------
Q ss_pred cCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhh-HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 005005 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE-RVVMLEMERSSLESSLKELESKLSISQEDVAKLST 316 (720)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~-~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~ 316 (720)
..|..|--.+- |.+.|-+-..++.+|.+-+++-+ |+..|++.-..++..+++|.+++..+..+-....+
T Consensus 50 ~eD~~vYk~VG--------~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~~ 119 (119)
T COG1382 50 DEDAPVYKKVG--------NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGGG 119 (119)
T ss_pred CcccHHHHHhh--------hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
No 455
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.19 E-value=5.3e+02 Score=26.99 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=29.5
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~ 286 (720)
+-.+-++.+.|++|=.-...-|..+|+-..+|..-|..-+.=
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~ 159 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYR 159 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 335667777788877777777888888887777666654433
No 456
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.18 E-value=2.4e+02 Score=24.74 Aligned_cols=64 Identities=27% Similarity=0.244 Sum_probs=44.2
Q ss_pred hhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 005005 254 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (720)
Q Consensus 254 ~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (720)
.|..|+.+|++++..+-.++.... .-...|-+||.+..++|.+ .-.+|..|-++++.|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~---~~~k~L~~ERd~~~~~l~~-----------------a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHE---IENKRLRRERDSAERQLGD-----------------AYEENNKLKEENEALRK 61 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 577888888888888877765443 3445666788877666654 23456677888888877
Q ss_pred HHHH
Q 005005 334 LLAK 337 (720)
Q Consensus 334 ~l~~ 337 (720)
-|+.
T Consensus 62 el~~ 65 (69)
T PF14197_consen 62 ELEE 65 (69)
T ss_pred HHHH
Confidence 6654
No 457
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=32.11 E-value=65 Score=33.60 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.7
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|||.+| |+|-+-..+...|++.||+|.++-+.
T Consensus 1 mmkI~ii-----------G~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVL-----------GAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEE-----------CCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4677766 45667778888999999999988763
No 458
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.03 E-value=36 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.0
Q ss_pred cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 525 AKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 525 AKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
+.+||-|-+-+.+.++|.+.||+|+++.+.....
T Consensus 4 lV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~ 37 (275)
T COG0702 4 LVTGATGFVGGAVVRELLARGHEVRAAVRNPEAA 37 (275)
T ss_pred EEEecccchHHHHHHHHHhCCCEEEEEEeCHHHH
Confidence 4578888899999999999999999999975433
No 459
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.01 E-value=92 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=17.4
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHh
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEM 288 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~ 288 (720)
++..++.+=..+...|..|+.++.....+-+.+-.+..
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~ 43 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDD 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444444444444555555544444444443333333
No 460
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=31.99 E-value=66 Score=31.41 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||-|-+-.++.++|.+.|++|.++..+
T Consensus 7 tGa~g~iG~~l~~~l~~~g~~v~~~~~~ 34 (247)
T PRK09730 7 TGGSRGIGRATALLLAQEGYTVAVNYQQ 34 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5777778888999999999999876543
No 461
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.81 E-value=49 Score=31.20 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 526 KVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 526 KVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
-+||-|-+-..+.++|.+.||+|+++.+.-.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 3699999999999999999999999998743
No 462
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=31.70 E-value=2.4e+02 Score=31.70 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHhhhhhhcccCChhHHHHHHHHH
Q 005005 440 DMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMV 474 (720)
Q Consensus 440 ~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~~v 474 (720)
.+| .||...|. ..-.++.+|+..|...|.-|.
T Consensus 98 gIP-~FWl~vL~--Nh~~ls~~I~e~De~iL~~L~ 129 (337)
T PTZ00007 98 GLP-QFWLTAMK--NNNTLGSAIEEHDEPILSYLS 129 (337)
T ss_pred Ccc-cHHHHHHH--cCccHhhhCCHHHHHHHHhhC
Confidence 565 89999888 566778899988888776543
No 463
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=31.61 E-value=1.8e+02 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=15.8
Q ss_pred hhhHhhhHHHHHHHHHHhhhc
Q 005005 196 KIHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (720)
..+++.+++++++|..+|+..
T Consensus 22 ~~~l~~~~~~~~~le~~~~~p 42 (364)
T TIGR00020 22 SLDPEKKKARLEELEKEMEDP 42 (364)
T ss_pred hCCHHHHHHHHHHHHHHhcCC
Confidence 455667788888888888764
No 464
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=31.43 E-value=5.1e+02 Score=31.62 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (720)
|-.|.|. +.-++.|-+-+|-. ...|.++++++ +-++|--+--++..++.-|+-+.-.++ +++...+|
T Consensus 175 WmakFes-~~~ed~a~~a~d~g---~E~~~~~k~~~--~~A~L~~~~~~~~ts~E~~K~~vs~~e-------~i~~LQeE 241 (980)
T KOG0447|consen 175 WMAKFES-GSPEETAFRATDRG---SESDKHFRKGL--LGALLLLQIQEESTSYEQQKRKVSDKE-------KIDQLQEE 241 (980)
T ss_pred HHHHHhc-CCchhhhhcccCCC---CccCcchhhhh--HHHHHHHHHhhccCCHHHHhhhhhHHH-------HHHHHHHH
Confidence 4444444 44455555555544 45677777776 556777666666666655444444444 44444455
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcch
Q 005005 404 IH-SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIR 482 (720)
Q Consensus 404 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~ 482 (720)
|. .|+ .+|..|.+|.+|++. + .+|||.=| +-+-.+|++- +++.
T Consensus 242 ~l~tQ~--------kYQreLErlEKENke--L------------r~lll~kd----------~k~i~~kklK----kSLI 285 (980)
T KOG0447|consen 242 LLHTQL--------KYQRILERLEKENKE--L------------RKLVLQKD----------DKGIHHRKLK----KSLI 285 (980)
T ss_pred HHHHHH--------HHHHHHHHHHHhhHH--H------------HHHHhhcc----------chhhHHHHHH----HHHH
Confidence 43 332 356778888888876 2 24554222 2234455543 4889
Q ss_pred hhhHhhhhhchHHHHHhhhhccCCCC--CCCceEEEEecc
Q 005005 483 DAYMECKEKNEHEAISTFLKLTSSSI--SSGLHVIHIAAE 520 (720)
Q Consensus 483 ~~~~~~~~~~~~e~~~~~~~~~~~~k--~~~MKILfVSSE 520 (720)
|+|. |+++.+.+...+-+ -+-.+|+.|+--
T Consensus 286 DMYS--------EVLD~Ls~YD~sYnt~DhLPRVVVVGDQ 317 (980)
T KOG0447|consen 286 DMYS--------EVLDVLSDYDASYNTQDHLPRVVVVGDQ 317 (980)
T ss_pred HHHH--------HHHHHHhcccccccccccCceEEEEcCc
Confidence 9997 67888887765433 345678888654
No 465
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.43 E-value=1.4e+02 Score=25.36 Aligned_cols=56 Identities=32% Similarity=0.511 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhch----hhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 160 DLHKILQEKEALQGEINALEMRLAET----DARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
++.+.-++.+.++++|..++.+|+-- -|--.|-.+++...+-++.++++|+..|..
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888889999999998853 344445566677777778888888776653
No 466
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.31 E-value=74 Score=33.76 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=28.1
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|||.+| |+|.+-+++.+.|.+.||+|+++-+.
T Consensus 4 ~m~I~ii-----------G~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAIL-----------GAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEE-----------CccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4787766 67889999999999999999988754
No 467
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.18 E-value=6.7e+02 Score=27.94 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=34.5
Q ss_pred hhhhhhhhHHHHHHhhhhh----HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH
Q 005005 274 NSVKDADERVVMLEMERSS----LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL 334 (720)
Q Consensus 274 ~~~~~~~~~~~~~~~e~~~----l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (720)
-.+.+.+--+-+|-|||-- ||+.=.-|+++-....++-.+.++|+-|-..|-|-.++|+.-
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 3445555555666666654 444444444455555556667777777766666666655443
No 468
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.03 E-value=3.5e+02 Score=30.52 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=34.3
Q ss_pred HHhhhhhhHHHhhhhchhhhhhHhhhhhhhH----hhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCc
Q 005005 169 EALQGEINALEMRLAETDARIRVAAQEKIHV----ELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPA 234 (720)
Q Consensus 169 ~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (720)
+.|-.+....-.+|++...+.+-++++-..- --+-++||+.++++..+|.+ +.++.|+
T Consensus 269 e~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~--------mtD~sPl 330 (359)
T PF10498_consen 269 EPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS--------MTDGSPL 330 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCCHH
Confidence 3344444445555666555555544432211 12458899999999999887 5566555
No 469
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=31.00 E-value=4e+02 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=28.4
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEE
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VI 551 (720)
..+.||+.|++=-. --|=-.++..|+.+|++.|..|-+|
T Consensus 100 ~~~~~vi~vts~~~----g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 100 SEGRKALAVVSAKS----GEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred CCCCeEEEEECCCC----CCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34567777765211 1245578899999999999999988
No 470
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.89 E-value=7.5e+02 Score=28.34 Aligned_cols=146 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhh
Q 005005 151 NEARVQALEDLH----KILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDV 226 (720)
Q Consensus 151 ~~~r~~a~~~~~----~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
||.+..|-.-|+ ||...-|-|..=-..+|.|--|+ .|-+.+.+-|-.||-..|.-++..+..
T Consensus 63 ~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~-------~qL~~qnqkL~nqL~~~~~vf~k~k~~------- 128 (401)
T PF06785_consen 63 KQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQES-------EQLQSQNQKLKNQLFHVREVFMKTKGD------- 128 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHhcch-------
Q ss_pred hhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh--------------
Q 005005 227 FANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-------------- 292 (720)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~-------------- 292 (720)
.+-|-.-+..++|||.-|+-.+++++.+ ..|-+|+...|-+|-+.
T Consensus 129 ------------------~q~LE~li~~~~EEn~~lqlqL~~l~~e---~~Ekeeesq~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 129 ------------------IQHLEGLIRHLREENQCLQLQLDALQQE---CGEKEEESQTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred ------------------HHhhHHH------------------HHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 005005 293 ------------------LESSLKE------------------LESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (720)
Q Consensus 293 ------------------l~~~~~~------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (720)
||+.++| ++++=..+-.||. +.+-.|-|..-.||||..+
T Consensus 188 tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~--~ql~selkkivf~~enie~ 262 (401)
T PF06785_consen 188 TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVP--KQLVSELKKIVFKVENIEA 262 (401)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhH--HHHHHHHHHHHHHHhhHHH
No 471
>PRK08655 prephenate dehydrogenase; Provisional
Probab=30.46 E-value=65 Score=36.44 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||+|-+-+++.++|.+.|++|.++-+.
T Consensus 6 IGG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 6 IGGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred EecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4788888899999999999999988654
No 472
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=30.36 E-value=7.1e+02 Score=26.72 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH
Q 005005 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~ 379 (720)
+.+..|...+.+|..=.+++-.++.++..=+-+++.|+..++++.--+++++.+
T Consensus 250 ~~~~~L~~~l~kak~w~~~i~~ll~~~~~~~p~~~el~~l~~~~~~L~~~~~~~ 303 (335)
T PF08429_consen 250 PSLDKLKDALQKAKEWLRQIEELLEQNGSKRPTLDELEELVAESEELPVKLEEL 303 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhcCCCCCchH
Confidence 446667777777776666666666555555556777888887777777777644
No 473
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=30.29 E-value=6.1e+02 Score=26.95 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=52.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 136 LISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
|-.++.|.+.+|....+ +|+|+-- ..+.|+|...|..+|.+|.++-.+++-|-+.-...----.+.++=.|+|.+
T Consensus 7 ~~~~~d~lq~~i~~as~----~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq 81 (207)
T PF05546_consen 7 LSFYMDSLQETIFTASQ----ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567788888888765 5777654 678899999999999999999888777655433222222333444566666
Q ss_pred cc
Q 005005 216 RG 217 (720)
Q Consensus 216 ~~ 217 (720)
|.
T Consensus 82 RK 83 (207)
T PF05546_consen 82 RK 83 (207)
T ss_pred cc
Confidence 63
No 474
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.15 E-value=72 Score=32.87 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|.|-+-+.+...|++.||+|+++.+.
T Consensus 7 G~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 7 GAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 34555577788899999999999863
No 475
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=29.96 E-value=77 Score=35.01 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=33.8
Q ss_pred ceEEEEecccCCccccCCHH----HHHHHHHHHHHHCCCeEEEEecCCCc
Q 005005 512 LHVIHIAAEMAPVAKVGGLG----DVVAGLGKALQKKGHLVEIVLPKYDC 557 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG----DVVgsLPKALa~lGhEV~VILPkY~~ 557 (720)
-+|.+.+.-+.|..+-+..+ .+..+|-.|.+++|++|++++|.++.
T Consensus 230 ~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~~~ 279 (369)
T PHA03003 230 KSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKK 279 (369)
T ss_pred hEEEEEEeccccEEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEecCCc
Confidence 45777777777866555543 67777777777899999999998643
No 476
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=29.96 E-value=67 Score=34.05 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.2
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|||.+| |.|-+-+.+...|++.||+|+++.+.
T Consensus 2 ~mkI~Ii-----------G~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVL-----------GAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEE-----------CCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4777766 56667778888999999999999763
No 477
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.81 E-value=80 Score=27.25 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=12.8
Q ss_pred HHhhHHHHHhhhhcchhhhhccc
Q 005005 293 LESSLKELESKLSISQEDVAKLS 315 (720)
Q Consensus 293 l~~~~~~~e~~~~~~~~~~~~~~ 315 (720)
++..|-+||.|++-...-+.+|+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777665444444333
No 478
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.64 E-value=9.2e+02 Score=29.74 Aligned_cols=169 Identities=24% Similarity=0.329 Sum_probs=81.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHH
Q 005005 136 LISMIRNAEKNILLLNEARVQALEDLHKILQEK---EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHE 212 (720)
Q Consensus 136 ~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek---~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (720)
+-++|++-++|=-+.+-.|+.-+=++++.+.=+ +.++.+++.+...|+.. .+|.++-.+.=+.
T Consensus 532 ~s~v~~~C~~N~~iy~~L~l~~~ynl~~~~~i~~~~~~i~~~~~~~~v~l~~i--------------~lL~~~~~~~L~~ 597 (806)
T PF05478_consen 532 ISSVYRDCKANESIYTVLQLNNLYNLNELLNISQYTDEIQSEFESLNVDLSNI--------------TLLTPEEKRNLED 597 (806)
T ss_pred HHHHHHHHhcCCHHHHHHhhcceecHHHHhhHHHHhhhHHHHHHHhccCcccc--------------cccCHHHHHHHHH
Confidence 456788888888888888888877787777522 34555555554433322 2222222222223
Q ss_pred hhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhc--chhHHHHHHHHhhhhhhhh-hHHHHHHhh
Q 005005 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLS--LKNDIKVLKAELNSVKDAD-ERVVMLEME 289 (720)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~--~k~~~~~~k~~~~~~~~~~-~~~~~~~~e 289 (720)
+++.|.+.-........=+.|. .. -.+-++..+|+.+..+--. +++.++ .+........ +.+..++.-
T Consensus 598 ~~~s~l~~~~~~~~~~~l~~~~-----t~-~dL~~~a~~L~~la~~~~~~~~~~~L~---~~a~~l~~~~~~~v~pl~~~ 668 (806)
T PF05478_consen 598 LRNSGLSDIDFSLYLEQLCKPL-----TP-VDLPSLANQLEALANSLPNGWLRNALK---NEAQNLRAIQKELVSPLEQL 668 (806)
T ss_pred HHhCCCccCCHHHHHHHHhCCC-----CC-CCHHHHHHHHHHHHHhcCCCchhHHHH---HHHHHHHHHHHHHHhhHHHH
Confidence 3334433222222111111111 00 0133555566655544322 333332 2222222222 466667777
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 005005 290 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (720)
Q Consensus 290 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 337 (720)
.+.|..+++.|++. .+++..--+.+-++|.+.|..|..
T Consensus 669 ~~~L~~~l~~L~~~----------~~~l~~~i~~ll~~v~~aq~fL~~ 706 (806)
T PF05478_consen 669 VSKLNQSLKKLDSL----------SSNLQNSINILLDAVQRAQDFLRN 706 (806)
T ss_pred HHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776 223333333444555555555544
No 479
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=29.63 E-value=1.1e+03 Score=28.77 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=71.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHH-HHHHHH
Q 005005 134 DNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQL-QKLQHE 212 (720)
Q Consensus 134 ~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 212 (720)
-.+..-++.++|++.---|-++.+||++...++|+-+.|+. ++++|+---. |..-|-+-..++.+-=- .+++.+
T Consensus 6 ~~~~~~~~d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~---y~~~l~~l~~--k~~~q~~~~d~v~~~~~~q~~~~~ 80 (640)
T KOG3565|consen 6 RSVLRELKDAFKATEQSTQNGLDWLERIVQFLKERADKEKE---YEEKLRSLCK--KFEFQSKSGDEVAESVSGQPLFSE 80 (640)
T ss_pred HHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHH---HHHHHHHhhh--HhhcCCcccchHHHHhccCcchhH
Confidence 34566778899999999999999999999999999888765 4555543322 22222222222210000 011111
Q ss_pred hhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh
Q 005005 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (720)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~ 280 (720)
+.+ ..+.+...++.|+.||+..|..+++....+.+++...
T Consensus 81 ~lq----------------------------~~~~i~~r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~ 120 (640)
T KOG3565|consen 81 LLQ----------------------------RAQQIATRLEILKIEDEEVKKSLEATLKTSLDLVAQR 120 (640)
T ss_pred HHH----------------------------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 111 1346677788888999999998888877776665544
No 480
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=29.61 E-value=3.8e+02 Score=32.00 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHH
Q 005005 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLA 336 (720)
Q Consensus 261 ~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 336 (720)
+-+++++.++.++.+.+..|+....++.-+..||+-+-+++.+|... ...+.. ..-|-..+.++++.++..|+
T Consensus 512 ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~--~~~~~~-t~ee~~~l~~~l~~~~~wL~ 584 (653)
T PTZ00009 512 LSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDE--KVKGKL-SDSDKATIEKAIDEALEWLE 584 (653)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhccC-CHHHHHHHHHHHHHHHHHHh
Confidence 34667888888888887777777777777777888888877777421 111111 11222356666666666665
No 481
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=29.58 E-value=5.5e+02 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 532 DVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 532 DVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
-+-..+-+.|.+.||+|.|....|+..
T Consensus 14 hfFk~~I~eL~~~GheV~it~R~~~~~ 40 (335)
T PF04007_consen 14 HFFKNIIRELEKRGHEVLITARDKDET 40 (335)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccchH
Confidence 456778899999999999999998754
No 482
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.42 E-value=4.1e+02 Score=27.24 Aligned_cols=139 Identities=19% Similarity=0.313 Sum_probs=72.1
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhHh----------hhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCccc
Q 005005 167 EKEALQGEINALEMRLAETDARIRVA----------AQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (720)
Q Consensus 167 ek~~lq~~~~~l~~~l~e~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (720)
-...||.||.....|.++...++-.. .-+..+..=+++-+.+|..|-.-. .
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~--~----------------- 77 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRS--E----------------- 77 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhH--H-----------------
Confidence 34568888888888888877776211 011112223344444444432210 0
Q ss_pred ccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 005005 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA-DERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (720)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~ 315 (720)
.+..-| .-|-+.|+..+..|-.|.+||+.|........+. ..+=....+|...+..- +..-+..+
T Consensus 78 ~L~qvN---~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y-------~~~eh~rl---- 143 (182)
T PF15035_consen 78 ELAQVN---ALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQY-------LSSEHSRL---- 143 (182)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcccccHH----
Confidence 000001 1456777778888888888888888776653221 11111111222222222 22222222
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 005005 316 TLKVECKDLYEKVENLQGLLAKATKQADQ 344 (720)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 344 (720)
.+||..|-.|+..+.-...+.+.
T Consensus 144 ------l~LWr~v~~lRr~f~elr~~Ter 166 (182)
T PF15035_consen 144 ------LSLWREVVALRRQFAELRTATER 166 (182)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 26899999999888776555554
No 483
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=29.19 E-value=3.5e+02 Score=31.81 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=40.4
Q ss_pred hhhhHHHHHHhhhhhH--------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 005005 278 DADERVVMLEMERSSL--------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l--------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 332 (720)
+.-|-..+|.|-|+.+ -+|+.|...|+.+|..-.+++.++-.|--.=|..+|.|=
T Consensus 365 ~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~lc 427 (575)
T KOG4403|consen 365 EAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESLC 427 (575)
T ss_pred HHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555677888875 467888888888888888888888877655677777653
No 484
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=29.17 E-value=24 Score=39.18 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 528 GGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 528 GGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|+---+++.+.++|+++||+|++++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4566688999999999999999999964
No 485
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.14 E-value=2.6e+02 Score=33.00 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 005005 351 QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL 397 (720)
Q Consensus 351 ~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (720)
+...++++++.+++.|... ..+.+++..+.|...++.++.++
T Consensus 554 e~~~i~~~l~~~~~wL~~~-----~~~~i~~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 554 EKEKIEAAIKELKEALKGE-----DKEAIKAKTEELTQASQKLGEAM 595 (627)
T ss_pred HHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666543 33444444444444555555443
No 486
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.12 E-value=3.8e+02 Score=24.61 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHH---H-hHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 005005 353 QELRKKVDKLEES---L-DEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (720)
Q Consensus 353 ~~l~~~~d~l~~~---l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (720)
.=||-.|+.|++- | .+++.-+-+-+.|++.|+.|++.-....+|++.
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666652 2 234444555677888999999988888888874
No 487
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=29.09 E-value=4e+02 Score=31.25 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhh
Q 005005 318 KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI 371 (720)
Q Consensus 318 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~ 371 (720)
..+..+-.++++.|...|.. ....+.+|.+=+++...++..++.+.+.++
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~----~~~~l~~L~~L~~i~~~l~~~~~al~~~~~ 124 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEE----NEQLLEVLEQLQEIDELLEEVEEALKEGNY 124 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 33333444555555544443 334444566666666666666666555443
No 488
>PLN02206 UDP-glucuronate decarboxylase
Probab=29.02 E-value=86 Score=35.40 Aligned_cols=38 Identities=32% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 505 SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 505 ~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
-..+.+.|||+. |||-|-+-..|.++|.+.|++|+++-
T Consensus 113 ~~~~~~~~kILV----------TGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVV----------TGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEE----------ECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 333456688763 69999999999999999999999874
No 489
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=28.92 E-value=7.7e+02 Score=27.56 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=26.9
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
....+=+-+.+.||.+-.+|..-|...-...|..
T Consensus 58 ~~~~~t~~~kk~WW~~R~~LD~rL~~LL~~iE~~ 91 (383)
T PF03568_consen 58 TSKIKTKEDKKKWWKERKALDSRLKDLLENIENS 91 (383)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456678899999999999999988888873
No 490
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.89 E-value=72 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|=|.|+....+.|.+.|++|+||-|..
T Consensus 20 GGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 20 GGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 447889999999999999999998764
No 491
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.80 E-value=6.1e+02 Score=32.17 Aligned_cols=108 Identities=19% Similarity=0.100 Sum_probs=79.6
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 324 (720)
+|....+|.-.-+|+.++..|+..++.+. .+.+.-||-+....-+.+.+|-.+++.+-.|---.. .
T Consensus 703 ~~~~~~~l~~~~~~ra~~~~d~~~~r~~~------~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~--------~ 768 (913)
T KOG0244|consen 703 ALNPRGTLLYAAEERAVRMWDLKRLRSEG------KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM--------R 768 (913)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH--------H
Confidence 66777888888899999999999998876 678888999999999999999999998877643222 7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhh
Q 005005 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYK 373 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~ 373 (720)
|+.|-++-. | +-..+. +.+.--.++..+++++.++++-.|.+
T Consensus 769 w~~v~t~~~----a-k~~~~~--~~~~~~~~r~~~~~~~~~~re~~~~~ 810 (913)
T KOG0244|consen 769 WEAVGTLSE----A-KNFEPY--LYDGIVALRIQGDNLFSGSREKGIKK 810 (913)
T ss_pred Hhccccccc----c-hhhhHH--HHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 988876543 0 111111 23333456888889988888876654
No 492
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.73 E-value=4.8e+02 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 005005 402 EEIHSYVQLYQESVKEFQDTLHSLKEES 429 (720)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (720)
.++..-++.++..++..+..|+.+|...
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666655433
No 493
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=28.47 E-value=72 Score=33.03 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||+++ |.|-+-+.+...|++.||+|.++.+
T Consensus 1 mkI~Ii-----------G~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVV-----------GAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEE-----------CCCHHHHHHHHHHHHCCCceEEEec
Confidence 677766 4455556677788899999999886
No 494
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=28.40 E-value=6e+02 Score=25.29 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 005005 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (720)
-..|++++...|+|+..+-+.-+.-|+.|-..+..|=..
T Consensus 120 ~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP~~ 158 (186)
T PF04011_consen 120 FQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFPTN 158 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 345667788888888888777777777777777777553
No 495
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=2.9e+02 Score=33.51 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 153 ARVQALEDLHKIL-QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 153 ~r~~a~~~~~~~~-~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
.++..|+.=.+.| .+.++++.+|..|+.+|++.+.+++...+..--++.++...+.|+.+|..
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333 35567777888888888888777776666666666677777777766654
No 496
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.08 E-value=2e+02 Score=29.34 Aligned_cols=118 Identities=18% Similarity=0.265 Sum_probs=65.0
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCC--CeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEE
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lG--hEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~ 588 (720)
||||+++++ |-|.....|-+++++.+ +.|.++++.-+... +..+
T Consensus 1 m~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~-------------------~~~~------ 46 (200)
T PRK05647 1 MKRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISDRPDAY-------------------GLER------ 46 (200)
T ss_pred CceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEecCccch-------------------HHHH------
Confidence 589988863 55888889999998876 45555544322110 0000
Q ss_pred EEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCC
Q 005005 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (720)
Q Consensus 589 ~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~ 668 (720)
..-.|+|++.+++.. +-++ .-|..+.+++++ .++||+|=+--|.- ++++-++..+.
T Consensus 47 a~~~gIp~~~~~~~~---~~~~-------------~~~~~~~~~~l~--~~~~D~iv~~~~~~-ii~~~~l~~~~----- 102 (200)
T PRK05647 47 AEAAGIPTFVLDHKD---FPSR-------------EAFDAALVEALD--AYQPDLVVLAGFMR-ILGPTFVSAYE----- 102 (200)
T ss_pred HHHcCCCEEEECccc---cCch-------------hHhHHHHHHHHH--HhCcCEEEhHHhhh-hCCHHHHhhcc-----
Confidence 123588888876421 1001 123334455555 46899988877764 33344443221
Q ss_pred CCCEEEEecCC---CccccCCcc
Q 005005 669 SARVCFTCHNF---EYQGTAPAK 688 (720)
Q Consensus 669 ~iptVFTIHNL---aYQGiFp~~ 688 (720)
.-++-||.- .|.|..|..
T Consensus 103 --~~~iNiHpslLP~yrG~~p~~ 123 (200)
T PRK05647 103 --GRIINIHPSLLPSFPGLHTHE 123 (200)
T ss_pred --CCEEEEeCccccCCCCccHHH
Confidence 125777754 677765543
No 497
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=28.05 E-value=77 Score=32.93 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
|||-|-+-..|.++|.+.|++|+++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 6 TGGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 57778777888899999999999875
No 498
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.97 E-value=1.1e+03 Score=27.99 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhchhhHH
Q 005005 387 QQKMKLLEERLQRSDEEIH 405 (720)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~ 405 (720)
..=+++|.|+|..-...+.
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3334555555554444444
No 499
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=27.94 E-value=91 Score=33.12 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|+|-+-++++..|++.||+|+++-+.
T Consensus 9 G~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 9 GAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 58888899999999999999999775
No 500
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.90 E-value=8.8e+02 Score=27.02 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=20.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005005 141 RNAEKNILLLNEARVQALEDLHKILQEKEALQGEIN 176 (720)
Q Consensus 141 ~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~ 176 (720)
.+..++|--+++-|--.-..+..+..+.++|-.++.
T Consensus 16 ~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvr 51 (294)
T COG1340 16 KQLKEEIEELKEKRDELRKEASELAEKRDELNAKVR 51 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777775555555555544444444433
Done!