Query 005005
Match_columns 720
No_of_seqs 204 out of 1128
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 5.4E-42 1.8E-46 373.5 18.1 205 506-719 4-236 (536)
2 3fro_A GLGA glycogen synthase; 99.8 3.9E-18 1.3E-22 171.2 18.5 154 510-683 1-159 (439)
3 1rzu_A Glycogen synthase 1; gl 99.7 8.3E-18 2.8E-22 174.5 13.3 176 512-699 1-185 (485)
4 2qzs_A Glycogen synthase; glyc 99.7 1.3E-17 4.4E-22 173.1 12.0 174 512-699 1-183 (485)
5 3nb0_A Glycogen [starch] synth 99.5 2.7E-15 9.3E-20 170.4 1.0 185 514-719 29-255 (725)
6 1l5w_A Maltodextrin phosphoryl 99.3 1.4E-11 4.6E-16 141.8 13.4 68 623-690 272-360 (796)
7 2c4m_A Glycogen phosphorylase; 99.3 1.4E-11 4.6E-16 141.8 11.4 167 525-691 111-351 (796)
8 2gj4_A Glycogen phosphorylase, 99.2 9.7E-12 3.3E-16 143.4 6.0 98 460-557 6-152 (824)
9 3c48_A Predicted glycosyltrans 99.2 3.6E-10 1.2E-14 115.0 16.0 134 508-680 17-156 (438)
10 2r60_A Glycosyl transferase, g 99.1 3.7E-10 1.3E-14 118.2 14.9 137 511-680 7-154 (499)
11 3s28_A Sucrose synthase 1; gly 98.9 1.8E-08 6.1E-13 116.5 17.1 195 446-682 226-443 (816)
12 2iuy_A Avigt4, glycosyltransfe 98.4 1.1E-06 3.7E-11 87.0 9.7 46 511-556 3-58 (342)
13 2gek_A Phosphatidylinositol ma 98.3 2.2E-06 7.6E-11 85.7 11.2 46 509-556 18-63 (406)
14 2iw1_A Lipopolysaccharide core 98.3 2.2E-06 7.6E-11 84.7 10.7 92 512-652 1-92 (374)
15 3okp_A GDP-mannose-dependent a 98.2 4.7E-06 1.6E-10 82.7 11.0 118 510-680 3-121 (394)
16 2x6q_A Trehalose-synthase TRET 98.2 9.4E-07 3.2E-11 89.8 4.6 42 510-555 39-80 (416)
17 1f0k_A MURG, UDP-N-acetylgluco 98.2 7.2E-06 2.5E-10 81.4 10.5 39 511-555 6-44 (364)
18 2jjm_A Glycosyl transferase, g 98.1 1E-05 3.5E-10 81.6 11.3 124 510-679 12-135 (394)
19 2hy7_A Glucuronosyltransferase 97.3 0.0004 1.4E-08 72.4 8.0 40 509-553 12-51 (406)
20 1i84_S Smooth muscle myosin he 97.3 0.00022 7.6E-09 85.3 6.3 55 131-185 857-911 (1184)
21 3rsc_A CALG2; TDP, enediyne, s 97.2 0.0026 8.8E-08 64.8 12.4 38 509-554 18-57 (415)
22 1i84_S Smooth muscle myosin he 97.2 0.00059 2E-08 81.7 8.3 12 171-182 890-901 (1184)
23 3otg_A CALG1; calicheamicin, T 97.1 0.0016 5.5E-08 65.9 9.5 44 505-554 14-57 (412)
24 3oti_A CALG3; calicheamicin, T 97.1 0.0018 6.2E-08 66.0 9.9 39 507-553 16-56 (398)
25 3ia7_A CALG4; glycosysltransfe 97.0 0.0058 2E-07 61.3 12.7 36 511-554 4-41 (402)
26 4fzr_A SSFS6; structural genom 97.0 0.0024 8.4E-08 64.9 10.0 42 505-554 9-52 (398)
27 3tsa_A SPNG, NDP-rhamnosyltran 96.9 0.004 1.4E-07 62.8 10.4 36 511-554 1-38 (391)
28 3oy2_A Glycosyltransferase B73 96.9 0.0026 8.8E-08 64.4 8.9 40 512-555 1-40 (413)
29 1ygp_A Yeast glycogen phosphor 96.6 0.0066 2.3E-07 71.1 10.5 34 524-557 160-193 (879)
30 1c1g_A Tropomyosin; contractIl 96.6 0.5 1.7E-05 44.2 26.8 41 145-185 6-46 (284)
31 3h4t_A Glycosyltransferase GTF 96.5 0.018 6E-07 59.6 11.8 35 512-554 1-37 (404)
32 1vgv_A UDP-N-acetylglucosamine 96.3 0.013 4.4E-07 58.5 9.2 36 512-554 1-37 (384)
33 2iyf_A OLED, oleandomycin glyc 95.9 0.051 1.7E-06 55.7 11.7 37 511-555 7-45 (430)
34 3na7_A HP0958; flagellar bioge 95.8 0.31 1E-05 49.1 16.7 54 252-306 62-115 (256)
35 3vkg_A Dynein heavy chain, cyt 95.8 0.7 2.4E-05 61.2 24.0 53 157-216 1900-1953(3245)
36 3beo_A UDP-N-acetylglucosamine 95.7 0.032 1.1E-06 55.3 9.2 38 511-555 8-47 (375)
37 1uqt_A Alpha, alpha-trehalose- 95.7 0.016 5.4E-07 63.2 7.3 56 619-679 102-157 (482)
38 2dfs_A Myosin-5A; myosin-V, in 95.7 0.088 3E-06 63.2 14.2 130 253-405 917-1054(1080)
39 2dfs_A Myosin-5A; myosin-V, in 95.6 0.059 2E-06 64.6 12.2 78 254-337 957-1034(1080)
40 2x0d_A WSAF; GT4 family, trans 95.3 0.0076 2.6E-07 63.5 3.0 48 507-555 42-89 (413)
41 1v4v_A UDP-N-acetylglucosamine 95.2 0.12 4.2E-06 51.6 11.4 37 510-553 4-41 (376)
42 3na7_A HP0958; flagellar bioge 94.9 0.85 2.9E-05 45.9 16.4 152 272-430 9-167 (256)
43 2p6p_A Glycosyl transferase; X 94.6 0.055 1.9E-06 54.5 7.1 37 512-554 1-37 (384)
44 2v71_A Nuclear distribution pr 93.9 2 6.8E-05 42.6 16.1 170 247-434 7-182 (189)
45 3s2u_A UDP-N-acetylglucosamine 93.9 0.58 2E-05 48.1 12.9 28 527-554 9-39 (365)
46 3o0z_A RHO-associated protein 93.1 4.1 0.00014 39.8 16.4 138 268-421 21-162 (168)
47 3u1c_A Tropomyosin alpha-1 cha 91.6 0.99 3.4E-05 40.2 9.5 83 313-395 10-100 (101)
48 4amg_A Snogd; transferase, pol 90.8 0.25 8.5E-06 49.7 5.4 37 510-554 21-59 (400)
49 3vkg_A Dynein heavy chain, cyt 90.0 5.5 0.00019 53.2 17.8 162 158-340 1926-2105(3245)
50 1rrv_A Glycosyltransferase GTF 89.4 3.4 0.00012 42.4 12.6 35 512-554 1-37 (416)
51 3oja_B Anopheles plasmodium-re 88.1 3.7 0.00013 44.6 12.5 22 283-304 465-486 (597)
52 3u59_A Tropomyosin beta chain; 87.2 2.9 9.8E-05 37.0 8.9 58 313-370 10-71 (101)
53 3oja_B Anopheles plasmodium-re 84.4 5.3 0.00018 43.4 11.2 47 350-399 537-583 (597)
54 2fxo_A Myosin heavy chain, car 81.6 4.4 0.00015 37.2 7.9 38 269-306 57-94 (129)
55 4dvz_A Cytotoxicity-associated 80.8 53 0.0018 36.3 16.8 173 156-376 354-546 (569)
56 2iya_A OLEI, oleandomycin glyc 79.8 2.2 7.6E-05 43.7 5.9 38 510-555 11-50 (424)
57 2vsy_A XCC0866; transferase, g 79.6 2.1 7.1E-05 45.5 5.7 43 509-555 203-247 (568)
58 4dvy_P Cytotoxicity-associated 79.6 36 0.0012 38.8 15.4 171 156-376 614-806 (876)
59 2yjn_A ERYCIII, glycosyltransf 79.2 1.9 6.4E-05 44.8 5.1 39 508-554 17-57 (441)
60 3ghg_A Fibrinogen alpha chain; 77.5 5.3 0.00018 45.0 8.2 36 392-431 114-149 (562)
61 2ocy_A RAB guanine nucleotide 77.4 38 0.0013 32.6 13.1 54 350-406 79-133 (154)
62 3tnu_B Keratin, type II cytosk 75.4 17 0.00059 33.1 9.8 48 249-306 28-75 (129)
63 1iir_A Glycosyltransferase GTF 73.0 4.1 0.00014 41.9 5.6 36 512-555 1-38 (415)
64 3tnu_A Keratin, type I cytoske 72.3 21 0.00072 32.7 9.6 48 249-306 30-77 (131)
65 2avr_X Adhesion A; antiparalle 72.0 47 0.0016 30.9 11.7 69 341-420 35-103 (119)
66 4b4o_A Epimerase family protei 71.8 4 0.00014 39.9 5.0 27 527-553 6-32 (298)
67 2fxo_A Myosin heavy chain, car 71.4 61 0.0021 29.6 13.2 21 348-368 74-94 (129)
68 2b9c_A Striated-muscle alpha t 71.1 52 0.0018 31.1 12.2 99 278-406 21-119 (147)
69 3bas_A Myosin heavy chain, str 70.4 14 0.0005 32.0 7.6 48 255-305 40-87 (89)
70 1m1j_B Fibrinogen beta chain; 69.7 26 0.00089 38.9 11.3 34 253-286 89-122 (464)
71 1deq_A Fibrinogen (alpha chain 69.3 21 0.00071 38.9 10.1 25 331-368 54-78 (390)
72 3s4r_A Vimentin; alpha-helix, 68.8 24 0.00082 31.0 8.7 84 263-364 8-91 (93)
73 3ljm_A Coil Ser L9C; de novo d 68.6 3.3 0.00011 29.7 2.6 23 284-306 4-26 (31)
74 3a7p_A Autophagy protein 16; c 67.6 5.3 0.00018 38.5 4.6 103 198-309 22-124 (152)
75 2v66_B Nuclear distribution pr 65.8 7.7 0.00026 35.6 5.1 58 242-309 34-91 (111)
76 3q8t_A Beclin-1; autophagy, AT 63.8 63 0.0021 28.5 10.5 86 265-363 5-94 (96)
77 2yy0_A C-MYC-binding protein; 63.4 5.6 0.00019 32.0 3.3 32 159-190 19-50 (53)
78 1x8y_A Lamin A/C; structural p 63.0 5.6 0.00019 34.4 3.6 51 166-216 3-54 (86)
79 1gk4_A Vimentin; intermediate 62.4 27 0.00092 29.9 7.7 57 354-416 5-61 (84)
80 3uul_A Utrophin; spectrin repe 62.3 34 0.0012 28.8 8.4 21 265-285 79-99 (118)
81 3rrk_A V-type ATPase 116 kDa s 61.6 24 0.00083 36.3 8.7 134 326-475 159-306 (357)
82 4e61_A Protein BIM1; EB1-like 61.4 7.5 0.00026 35.5 4.2 53 245-307 6-58 (106)
83 3cve_A Homer protein homolog 1 60.3 32 0.0011 29.4 7.6 65 278-362 4-68 (72)
84 3s84_A Apolipoprotein A-IV; fo 59.3 1.6E+02 0.0055 30.1 24.1 93 324-422 152-247 (273)
85 1go4_E MAD1 (mitotic arrest de 58.3 4.6 0.00016 36.5 2.2 33 243-275 12-44 (100)
86 3tnu_A Keratin, type I cytoske 57.6 72 0.0025 29.1 10.2 33 384-416 80-112 (131)
87 3tnu_B Keratin, type II cytosk 57.1 93 0.0032 28.3 10.8 33 384-416 78-110 (129)
88 3hnw_A Uncharacterized protein 56.9 50 0.0017 30.9 9.1 67 283-369 70-136 (138)
89 1lss_A TRK system potassium up 55.8 15 0.00052 31.2 5.0 33 511-554 4-36 (140)
90 3d2f_A Heat shock protein homo 55.3 50 0.0017 37.6 10.5 46 261-306 524-569 (675)
91 1ic2_A Tropomyosin alpha chain 55.1 30 0.001 29.3 6.7 32 314-345 8-39 (81)
92 2p01_A Alpha-2-macroglobulin r 55.1 1.8E+02 0.0062 31.0 13.8 110 249-368 184-313 (323)
93 3i00_A HIP-I, huntingtin-inter 54.7 34 0.0012 31.5 7.5 38 324-364 45-82 (120)
94 3u1c_A Tropomyosin alpha-1 cha 53.8 71 0.0024 28.2 9.1 14 351-364 87-100 (101)
95 1deq_A Fibrinogen (alpha chain 53.8 29 0.001 37.7 7.8 99 255-366 58-157 (390)
96 2eqb_B RAB guanine nucleotide 53.7 43 0.0015 30.2 7.6 42 326-370 54-96 (97)
97 3hnw_A Uncharacterized protein 52.4 34 0.0012 32.0 7.2 54 133-186 77-130 (138)
98 3ghg_A Fibrinogen alpha chain; 52.0 51 0.0017 37.3 9.5 101 253-396 53-153 (562)
99 3tul_A Cell invasion protein S 51.7 1E+02 0.0036 29.7 10.3 102 294-398 19-124 (158)
100 1x8y_A Lamin A/C; structural p 51.6 27 0.00092 30.1 5.9 32 384-415 31-62 (86)
101 1gk4_A Vimentin; intermediate 51.0 20 0.00069 30.7 5.0 49 167-215 2-51 (84)
102 3fwz_A Inner membrane protein 50.2 17 0.0006 32.1 4.7 27 529-555 14-40 (140)
103 3cvf_A Homer-3, homer protein 50.2 64 0.0022 28.0 7.9 67 276-362 8-74 (79)
104 3fhn_A Protein transport prote 50.1 46 0.0016 38.7 9.2 31 367-401 111-141 (706)
105 3oh8_A Nucleoside-diphosphate 49.5 35 0.0012 36.7 7.8 35 510-554 146-180 (516)
106 4g65_A TRK system potassium up 48.2 7.5 0.00026 42.1 2.3 34 510-554 2-35 (461)
107 1deb_A APC protein, adenomatou 47.4 25 0.00086 28.5 4.6 47 247-303 7-53 (54)
108 3mov_A Lamin-B1; LMNB1, B-type 45.3 31 0.001 30.6 5.3 57 354-416 16-72 (95)
109 3doj_A AT3G25530, dehydrogenas 45.2 21 0.00071 36.0 4.9 36 508-554 18-53 (310)
110 2ocy_A RAB guanine nucleotide 45.2 2.2E+02 0.0074 27.4 15.4 132 248-402 18-150 (154)
111 3ew7_A LMO0794 protein; Q8Y8U8 45.1 25 0.00084 32.1 5.0 28 527-554 6-33 (221)
112 3haj_A Human pacsin2 F-BAR; pa 44.8 3.3E+02 0.011 29.4 17.7 19 155-173 35-53 (486)
113 1g6u_A Domain swapped dimer; d 44.8 28 0.00097 27.1 4.4 40 262-305 5-44 (48)
114 2zqm_A Prefoldin beta subunit 44.6 83 0.0028 27.3 8.1 26 280-305 83-108 (117)
115 3l4b_C TRKA K+ channel protien 44.6 19 0.00065 34.0 4.3 26 528-554 7-32 (218)
116 3o0z_A RHO-associated protein 44.3 2.4E+02 0.0081 27.6 15.8 102 254-364 31-132 (168)
117 3ghg_C Fibrinogen gamma chain; 43.9 93 0.0032 34.1 9.9 41 324-364 57-98 (411)
118 2x0d_A WSAF; GT4 family, trans 43.9 17 0.00058 38.1 4.1 41 639-679 131-172 (413)
119 3r6d_A NAD-dependent epimerase 43.7 28 0.00094 32.3 5.1 36 510-554 3-39 (221)
120 3mov_A Lamin-B1; LMNB1, B-type 43.7 55 0.0019 29.0 6.7 26 280-305 11-36 (95)
121 3bas_A Myosin heavy chain, str 43.1 87 0.003 27.0 7.8 21 348-368 68-88 (89)
122 2g1u_A Hypothetical protein TM 42.8 30 0.001 30.9 5.1 36 508-554 16-51 (155)
123 3a7p_A Autophagy protein 16; c 42.7 92 0.0031 30.0 8.5 51 353-406 78-128 (152)
124 2efr_A General control protein 42.1 2.4E+02 0.0082 27.0 15.4 43 324-369 75-117 (155)
125 2ew2_A 2-dehydropantoate 2-red 42.1 23 0.00079 34.5 4.5 32 511-553 3-34 (316)
126 3h2s_A Putative NADH-flavin re 41.9 29 0.001 31.9 5.0 28 527-554 6-33 (224)
127 1kd8_A GABH AIV, GCN4 acid bas 41.4 22 0.00074 26.9 3.1 28 160-187 9-36 (36)
128 1wcv_1 SOJ, segregation protei 41.2 29 0.00098 33.5 5.0 38 509-552 3-42 (257)
129 3dhn_A NAD-dependent epimerase 41.0 33 0.0011 31.7 5.2 28 527-554 10-37 (227)
130 1gs9_A Apolipoprotein E, APOE4 40.9 2.3E+02 0.008 27.0 11.2 88 325-414 26-121 (165)
131 1m1j_B Fibrinogen beta chain; 40.6 2.3E+02 0.0079 31.5 12.5 14 352-365 102-115 (464)
132 1fxk_A Prefoldin; archaeal pro 40.2 1E+02 0.0035 26.3 7.8 26 280-305 78-103 (107)
133 3ic5_A Putative saccharopine d 40.0 38 0.0013 27.8 4.9 27 527-554 11-38 (118)
134 3ol1_A Vimentin; structural ge 39.8 1E+02 0.0034 28.0 8.0 34 244-277 21-54 (119)
135 3t5t_A Putative glycosyltransf 39.2 60 0.0021 36.0 7.7 55 620-679 127-183 (496)
136 4dll_A 2-hydroxy-3-oxopropiona 38.9 23 0.00078 35.9 4.1 36 508-554 28-63 (320)
137 1jay_A Coenzyme F420H2:NADP+ o 38.9 32 0.0011 31.9 4.8 28 527-554 6-33 (212)
138 3aco_A Pacsin2, protein kinase 38.8 3.3E+02 0.011 27.8 12.8 18 156-173 43-60 (350)
139 2x4g_A Nucleoside-diphosphate- 38.6 35 0.0012 33.4 5.3 28 527-554 19-46 (342)
140 2dkn_A 3-alpha-hydroxysteroid 38.6 26 0.0009 32.7 4.2 28 527-554 7-34 (255)
141 1m1j_A Fibrinogen alpha subuni 38.5 1.7E+02 0.0057 32.8 10.8 21 349-369 57-77 (491)
142 1rpn_A GDP-mannose 4,6-dehydra 38.2 33 0.0011 33.6 5.0 39 506-554 9-47 (335)
143 2nrj_A HBL B protein; enteroto 38.0 1.2E+02 0.0041 32.0 9.5 107 288-417 226-336 (346)
144 2efl_A Formin-binding protein 37.7 3E+02 0.01 26.9 16.6 20 155-174 27-46 (305)
145 4id9_A Short-chain dehydrogena 37.4 25 0.00086 34.7 4.0 37 508-554 16-52 (347)
146 2b5u_A Colicin E3; high resolu 37.4 4.9E+02 0.017 29.5 14.3 17 199-215 316-332 (551)
147 2pk3_A GDP-6-deoxy-D-LYXO-4-he 37.3 27 0.00093 34.0 4.2 28 527-554 18-45 (321)
148 2pv7_A T-protein [includes: ch 36.8 34 0.0012 34.3 4.9 28 527-554 27-54 (298)
149 2efk_A CDC42-interacting prote 36.7 3.1E+02 0.011 26.8 20.3 67 247-313 66-134 (301)
150 3etw_A Adhesin A; antiparallel 36.6 2.6E+02 0.0089 25.9 12.3 66 335-407 29-94 (119)
151 3mcu_A Dipicolinate synthase, 36.3 33 0.0011 34.0 4.6 37 511-555 5-43 (207)
152 2qyt_A 2-dehydropantoate 2-red 36.2 23 0.00079 34.8 3.5 35 508-553 5-45 (317)
153 1psw_A ADP-heptose LPS heptosy 35.8 38 0.0013 33.5 5.0 35 512-554 1-39 (348)
154 2ph1_A Nucleotide-binding prot 35.8 39 0.0013 32.7 5.0 37 511-553 17-55 (262)
155 1ks9_A KPA reductase;, 2-dehyd 35.6 34 0.0012 32.9 4.6 26 529-554 7-32 (291)
156 3uun_A Dystrophin; triple heli 35.0 2E+02 0.0067 24.0 11.7 51 292-342 13-66 (119)
157 1u00_A HSC66, chaperone protei 34.9 2.2E+02 0.0075 27.9 10.2 69 263-336 118-186 (227)
158 3lqk_A Dipicolinate synthase s 34.1 35 0.0012 33.6 4.3 38 510-555 6-45 (201)
159 3s84_A Apolipoprotein A-IV; fo 33.9 4E+02 0.014 27.2 17.4 35 381-415 158-192 (273)
160 3dzc_A UDP-N-acetylglucosamine 33.8 57 0.002 33.9 6.2 38 510-554 24-62 (396)
161 3e8x_A Putative NAD-dependent 33.5 48 0.0017 31.0 5.1 35 510-554 20-54 (236)
162 4e81_A Chaperone protein DNAK; 33.5 1.8E+02 0.0063 28.5 9.5 44 263-306 121-164 (219)
163 2e7s_A RAB guanine nucleotide 33.5 2E+02 0.0069 27.2 9.1 16 354-369 100-115 (135)
164 4dzz_A Plasmid partitioning pr 33.5 38 0.0013 30.7 4.3 36 512-553 1-38 (206)
165 3f6r_A Flavodoxin; FMN binding 33.4 53 0.0018 28.9 5.1 38 511-553 1-38 (148)
166 2cly_A ATP synthase B chain, m 33.3 1.2E+02 0.004 30.6 8.0 77 247-332 88-165 (214)
167 3mq7_A Bone marrow stromal ant 33.0 1.8E+02 0.0063 27.1 8.5 79 300-390 30-108 (121)
168 2a01_A Apolipoprotein A-I; fou 32.8 3.8E+02 0.013 26.6 15.7 108 262-398 108-215 (243)
169 3dqp_A Oxidoreductase YLBE; al 32.7 39 0.0013 31.3 4.3 29 527-555 6-34 (219)
170 3ius_A Uncharacterized conserv 32.5 34 0.0012 32.8 3.9 28 527-555 11-38 (286)
171 3qvo_A NMRA family protein; st 32.5 34 0.0012 32.3 3.9 36 510-554 21-57 (236)
172 2l7b_A Apolipoprotein E, APO-E 32.4 25 0.00084 36.9 3.1 46 247-294 63-109 (307)
173 1n7h_A GDP-D-mannose-4,6-dehyd 32.2 41 0.0014 33.9 4.6 28 527-554 34-61 (381)
174 1id1_A Putative potassium chan 32.2 27 0.00092 31.1 3.0 27 527-554 9-35 (153)
175 4etp_A Kinesin-like protein KA 32.1 43 0.0015 36.0 5.0 61 243-306 3-63 (403)
176 1i24_A Sulfolipid biosynthesis 31.7 42 0.0014 33.8 4.6 26 527-552 17-42 (404)
177 3dfu_A Uncharacterized protein 31.5 14 0.00048 37.1 1.1 34 509-553 4-37 (232)
178 1gsa_A Glutathione synthetase; 31.4 47 0.0016 32.1 4.7 40 512-554 2-41 (316)
179 2yin_A DOCK2, dedicator of cyt 31.4 76 0.0026 34.4 6.8 110 305-420 297-422 (436)
180 2wt7_A Proto-oncogene protein 31.2 25 0.00086 28.6 2.3 33 245-277 25-57 (63)
181 3vps_A TUNA, NAD-dependent epi 31.2 44 0.0015 32.3 4.5 28 527-554 13-40 (321)
182 4gkw_A Spindle assembly abnorm 31.1 3.6E+02 0.012 25.8 14.4 94 261-370 15-111 (167)
183 1orr_A CDP-tyvelose-2-epimeras 30.6 40 0.0014 33.0 4.2 26 527-552 7-32 (347)
184 2rh8_A Anthocyanidin reductase 30.6 51 0.0017 32.4 4.9 27 527-553 15-41 (338)
185 2hy5_A Putative sulfurtransfer 30.6 91 0.0031 27.6 6.1 40 512-554 1-41 (130)
186 2vch_A Hydroquinone glucosyltr 30.4 37 0.0013 36.5 4.2 39 509-555 4-45 (480)
187 1cp2_A CP2, nitrogenase iron p 30.2 43 0.0015 32.1 4.2 33 512-551 1-35 (269)
188 3c24_A Putative oxidoreductase 30.2 64 0.0022 31.7 5.5 33 511-554 11-44 (286)
189 1js1_X Transcarbamylase; alpha 30.2 38 0.0013 35.8 4.1 41 511-555 166-206 (324)
190 3ruf_A WBGU; rossmann fold, UD 30.2 51 0.0017 32.6 4.9 28 527-554 31-58 (351)
191 2kho_A Heat shock protein 70; 30.1 1.2E+02 0.0041 33.8 8.3 46 261-306 507-552 (605)
192 3g0o_A 3-hydroxyisobutyrate de 30.0 45 0.0015 33.3 4.4 34 510-554 6-39 (303)
193 3t98_B Nucleoporin NUP58/NUP45 29.7 2E+02 0.007 25.3 8.1 67 283-365 14-80 (93)
194 1jx7_A Hypothetical protein YC 29.6 89 0.0031 26.3 5.7 41 512-555 2-44 (117)
195 1fjh_A 3alpha-hydroxysteroid d 29.6 46 0.0016 31.5 4.3 28 527-554 7-34 (257)
196 3u06_A Protein claret segregat 29.4 55 0.0019 35.4 5.3 59 245-306 5-63 (412)
197 1z82_A Glycerol-3-phosphate de 29.4 49 0.0017 33.4 4.7 34 510-554 13-46 (335)
198 4huj_A Uncharacterized protein 29.3 42 0.0014 32.0 3.9 31 511-552 23-53 (220)
199 3kjh_A CO dehydrogenase/acetyl 29.2 51 0.0017 30.6 4.4 32 512-551 1-34 (254)
200 3end_A Light-independent proto 29.1 51 0.0017 32.6 4.6 63 481-551 11-75 (307)
201 4fla_A Regulation of nuclear P 28.9 1.8E+02 0.0063 27.6 8.2 42 302-345 46-87 (152)
202 3ko8_A NAD-dependent epimerase 28.9 53 0.0018 31.8 4.6 27 527-553 6-32 (312)
203 3dtt_A NADP oxidoreductase; st 28.9 56 0.0019 31.7 4.8 36 508-554 16-51 (245)
204 3k9g_A PF-32 protein; ssgcid, 28.8 40 0.0014 32.4 3.8 38 508-552 23-62 (267)
205 3ni0_A Bone marrow stromal ant 28.7 1.3E+02 0.0045 27.1 6.6 72 299-376 22-93 (99)
206 1sjj_A Actinin; 3-helix bundle 28.6 7E+02 0.024 28.4 21.6 25 282-306 371-395 (863)
207 2efk_A CDC42-interacting prote 28.5 4.3E+02 0.015 25.9 16.6 21 153-173 18-38 (301)
208 2eqb_B RAB guanine nucleotide 28.5 2E+02 0.0069 25.8 7.8 85 247-337 9-94 (97)
209 3oja_A Leucine-rich immune mol 28.4 5.5E+02 0.019 27.1 16.0 41 380-420 441-481 (487)
210 2jee_A YIIU; FTSZ, septum, coi 28.2 66 0.0023 28.1 4.6 28 245-272 22-49 (81)
211 1kyq_A Met8P, siroheme biosynt 28.2 38 0.0013 34.8 3.6 35 510-555 12-46 (274)
212 3cve_A Homer protein homolog 1 28.1 1.1E+02 0.0037 26.2 5.7 21 350-370 14-34 (72)
213 1m1j_C Fibrinogen gamma chain; 28.1 76 0.0026 34.6 6.1 9 546-554 244-252 (409)
214 1wle_A Seryl-tRNA synthetase; 28.1 66 0.0023 35.8 5.7 29 191-219 35-63 (501)
215 2c20_A UDP-glucose 4-epimerase 28.1 47 0.0016 32.4 4.2 27 527-553 7-33 (330)
216 1y1p_A ARII, aldehyde reductas 28.0 77 0.0026 30.8 5.6 27 527-553 17-43 (342)
217 3nmd_A CGMP dependent protein 28.0 1.5E+02 0.0051 25.5 6.5 48 379-427 21-68 (72)
218 3jsv_C NF-kappa-B essential mo 28.0 2.5E+02 0.0085 25.2 8.3 67 355-428 21-90 (94)
219 3plt_A Sphingolipid long chain 27.9 1.7E+02 0.0058 29.9 8.2 56 126-181 62-126 (234)
220 1vl0_A DTDP-4-dehydrorhamnose 27.8 39 0.0013 32.5 3.4 41 508-558 9-49 (292)
221 3m2p_A UDP-N-acetylglucosamine 27.6 56 0.0019 31.8 4.6 28 527-554 8-35 (311)
222 3ot5_A UDP-N-acetylglucosamine 27.4 77 0.0026 33.1 5.9 37 511-554 27-65 (403)
223 3tov_A Glycosyl transferase fa 27.4 65 0.0022 33.0 5.2 40 508-555 5-48 (349)
224 2pq6_A UDP-glucuronosyl/UDP-gl 27.3 52 0.0018 35.1 4.6 39 511-555 8-46 (482)
225 3qne_A Seryl-tRNA synthetase, 27.1 1.4E+02 0.0047 33.3 8.0 70 146-215 34-103 (485)
226 3ajw_A Flagellar FLIJ protein; 27.1 3.3E+02 0.011 24.1 13.4 97 330-427 9-119 (150)
227 3hly_A Flavodoxin-like domain; 27.0 79 0.0027 28.8 5.2 37 512-553 1-37 (161)
228 3okq_A BUD site selection prot 26.8 2.5E+02 0.0086 26.8 8.6 57 198-281 29-85 (141)
229 2raf_A Putative dinucleotide-b 26.8 60 0.002 30.8 4.5 35 509-554 17-51 (209)
230 2h78_A Hibadh, 3-hydroxyisobut 26.8 46 0.0016 32.9 3.8 33 511-554 3-35 (302)
231 3dfz_A SIRC, precorrin-2 dehyd 26.7 38 0.0013 33.7 3.2 27 529-555 38-64 (223)
232 2q1w_A Putative nucleotide sug 26.7 53 0.0018 32.5 4.3 28 527-554 27-54 (333)
233 3guy_A Short-chain dehydrogena 26.7 42 0.0014 31.6 3.4 28 527-554 7-34 (230)
234 2oto_A M protein; helical coil 26.7 3.9E+02 0.013 24.8 12.1 48 254-301 26-77 (155)
235 1txg_A Glycerol-3-phosphate de 26.6 46 0.0016 33.0 3.8 25 529-553 7-31 (335)
236 1hyq_A MIND, cell division inh 26.5 85 0.0029 29.9 5.6 35 512-552 2-38 (263)
237 1kjq_A GART 2, phosphoribosylg 26.5 83 0.0028 31.9 5.8 40 504-554 4-43 (391)
238 1g3q_A MIND ATPase, cell divis 26.5 94 0.0032 29.0 5.7 38 511-554 1-40 (237)
239 1f46_A Cell division protein Z 26.5 35 0.0012 31.8 2.7 44 629-688 23-69 (140)
240 3eag_A UDP-N-acetylmuramate:L- 26.3 70 0.0024 32.6 5.2 33 510-552 3-35 (326)
241 4b9q_A Chaperone protein DNAK; 26.3 2.4E+02 0.0081 31.4 9.8 71 261-336 507-577 (605)
242 1sb8_A WBPP; epimerase, 4-epim 26.2 65 0.0022 32.0 4.9 27 527-553 33-59 (352)
243 2xj4_A MIPZ; replication, cell 26.2 61 0.0021 32.0 4.6 36 511-552 3-40 (286)
244 3c85_A Putative glutathione-re 26.2 52 0.0018 29.9 3.8 34 510-554 38-72 (183)
245 1pvv_A Otcase, ornithine carba 26.1 63 0.0021 33.9 4.8 37 509-555 153-189 (315)
246 1hjb_A Ccaat/enhancer binding 26.1 38 0.0013 29.7 2.7 31 247-277 40-70 (87)
247 3d7l_A LIN1944 protein; APC893 25.9 65 0.0022 29.3 4.4 27 527-554 9-35 (202)
248 3ra3_A P1C; coiled coil domain 25.8 32 0.0011 24.3 1.7 27 251-277 1-27 (28)
249 2dq0_A Seryl-tRNA synthetase; 25.8 1.4E+02 0.0047 32.7 7.7 71 146-216 32-102 (455)
250 1go4_E MAD1 (mitotic arrest de 25.8 89 0.0031 28.2 5.1 26 281-306 19-44 (100)
251 3pef_A 6-phosphogluconate dehy 25.8 64 0.0022 31.7 4.7 27 529-555 8-34 (287)
252 2ark_A Flavodoxin; FMN, struct 25.7 79 0.0027 29.2 5.0 40 509-553 2-42 (188)
253 3l6d_A Putative oxidoreductase 25.7 64 0.0022 32.4 4.7 34 510-554 8-41 (306)
254 3lbx_B Beta-I spectrin, spectr 25.7 4E+02 0.014 24.5 11.3 17 408-424 112-128 (185)
255 1hdo_A Biliverdin IX beta redu 25.6 51 0.0017 29.6 3.6 28 527-554 9-36 (206)
256 3mq9_A Bone marrow stromal ant 25.6 2.7E+02 0.0091 29.4 9.7 24 192-215 392-415 (471)
257 3mq9_A Bone marrow stromal ant 25.5 3.7E+02 0.013 28.3 10.8 25 249-273 358-382 (471)
258 2pzm_A Putative nucleotide sug 25.5 68 0.0023 31.7 4.8 35 509-553 18-52 (330)
259 1i36_A Conserved hypothetical 25.5 52 0.0018 31.7 3.9 25 529-553 7-31 (264)
260 4e21_A 6-phosphogluconate dehy 25.4 57 0.002 34.2 4.4 33 511-554 22-54 (358)
261 1ez3_A Syntaxin-1A; three heli 25.2 3.4E+02 0.012 23.6 12.7 25 407-431 100-124 (127)
262 2p22_C Protein SRN2; endosome, 25.2 4.9E+02 0.017 25.5 12.0 30 391-420 145-176 (192)
263 3fxb_A Trap dicarboxylate tran 25.1 2.6E+02 0.0088 28.5 9.1 63 321-388 230-297 (326)
264 1gk6_A Vimentin; intermediate 25.1 1.7E+02 0.0057 23.6 6.1 48 353-410 3-50 (59)
265 2vns_A Metalloreductase steap3 24.9 60 0.0021 30.9 4.1 34 510-554 27-60 (215)
266 2yy0_A C-MYC-binding protein; 24.9 54 0.0019 26.2 3.2 24 376-399 21-44 (53)
267 1t2k_D Cyclic-AMP-dependent tr 24.9 38 0.0013 27.2 2.3 33 245-277 24-56 (61)
268 3cvf_A Homer-3, homer protein 24.9 2.2E+02 0.0074 24.7 7.1 19 352-370 22-40 (79)
269 4ep1_A Otcase, ornithine carba 24.9 56 0.0019 34.8 4.3 36 509-554 177-212 (340)
270 3bfv_A CAPA1, CAPB2, membrane 24.8 69 0.0024 31.9 4.7 37 509-551 79-117 (271)
271 2e7s_A RAB guanine nucleotide 24.8 1.2E+02 0.004 28.8 5.9 77 324-406 44-121 (135)
272 2d1p_A TUSD, hypothetical UPF0 24.8 1.4E+02 0.0046 27.6 6.4 41 510-553 11-52 (140)
273 3q9l_A Septum site-determining 24.8 99 0.0034 29.2 5.6 37 511-553 1-39 (260)
274 2afh_E Nitrogenase iron protei 24.7 67 0.0023 31.4 4.5 34 511-551 1-36 (289)
275 1gu4_A CAAT/enhancer binding p 24.7 43 0.0015 28.8 2.8 31 247-277 40-70 (78)
276 1db3_A GDP-mannose 4,6-dehydra 24.7 60 0.0021 32.3 4.3 27 527-553 7-33 (372)
277 3gd5_A Otcase, ornithine carba 24.7 58 0.002 34.4 4.3 36 509-554 155-190 (323)
278 1f0y_A HCDH, L-3-hydroxyacyl-C 24.6 73 0.0025 31.6 4.9 26 529-554 22-47 (302)
279 1yb1_A 17-beta-hydroxysteroid 24.6 80 0.0027 30.6 5.0 28 527-554 37-64 (272)
280 2b69_A UDP-glucuronate decarbo 24.5 72 0.0024 31.6 4.8 27 527-553 33-59 (343)
281 3hwr_A 2-dehydropantoate 2-red 24.5 66 0.0022 32.5 4.5 33 510-554 18-50 (318)
282 1bg6_A N-(1-D-carboxylethyl)-L 24.5 69 0.0023 32.0 4.6 33 511-554 4-36 (359)
283 3oja_A Leucine-rich immune mol 24.4 4.6E+02 0.016 27.7 11.3 24 280-303 373-396 (487)
284 1sbz_A Probable aromatic acid 24.4 73 0.0025 31.3 4.7 28 527-554 8-37 (197)
285 3qsg_A NAD-binding phosphogluc 24.4 51 0.0017 33.3 3.7 34 510-554 23-57 (312)
286 2gas_A Isoflavone reductase; N 24.4 46 0.0016 32.1 3.3 28 527-554 8-35 (307)
287 2a5l_A Trp repressor binding p 24.4 1E+02 0.0035 28.2 5.4 38 511-553 5-42 (200)
288 3b6i_A Flavoprotein WRBA; flav 24.4 90 0.0031 28.4 5.1 37 511-552 1-38 (198)
289 4a8t_A Putrescine carbamoyltra 24.4 64 0.0022 34.3 4.6 36 509-554 173-208 (339)
290 1gy8_A UDP-galactose 4-epimera 24.3 75 0.0026 32.0 4.9 27 527-553 8-35 (397)
291 2ke4_A CDC42-interacting prote 24.3 1.2E+02 0.0042 26.9 5.7 21 321-341 17-37 (98)
292 2v71_A Nuclear distribution pr 24.2 5.3E+02 0.018 25.5 18.7 49 379-431 100-148 (189)
293 2l3l_A Tubulin-specific chaper 24.2 2.8E+02 0.0096 25.0 8.1 53 323-384 39-91 (111)
294 2lem_A Apolipoprotein A-I; lip 24.2 2.3E+02 0.0078 27.7 8.2 83 331-414 14-102 (216)
295 2xv5_A Lamin-A/C; structural p 24.1 2E+02 0.0067 24.5 6.6 37 353-391 8-44 (74)
296 3i4f_A 3-oxoacyl-[acyl-carrier 24.1 73 0.0025 30.4 4.6 35 511-554 6-40 (264)
297 3ol1_A Vimentin; structural ge 24.1 4E+02 0.014 24.0 11.8 29 393-421 88-116 (119)
298 1rkx_A CDP-glucose-4,6-dehydra 23.9 77 0.0026 31.4 4.9 28 527-554 15-42 (357)
299 3llv_A Exopolyphosphatase-rela 23.9 44 0.0015 29.0 2.8 25 530-554 14-38 (141)
300 2f1k_A Prephenate dehydrogenas 23.9 72 0.0024 31.0 4.5 26 529-554 7-32 (279)
301 1s94_A S-syntaxin; three helix 23.8 4.4E+02 0.015 24.6 9.9 20 323-342 40-59 (180)
302 1qyd_A Pinoresinol-lariciresin 23.8 56 0.0019 31.6 3.8 27 528-554 11-37 (313)
303 3i83_A 2-dehydropantoate 2-red 23.7 68 0.0023 32.3 4.5 32 512-554 3-34 (320)
304 1dh3_A Transcription factor CR 23.7 26 0.00089 28.1 1.1 30 245-274 24-53 (55)
305 2c5a_A GDP-mannose-3', 5'-epim 23.6 1.1E+02 0.0036 31.1 5.9 28 527-554 35-62 (379)
306 4a8p_A Putrescine carbamoyltra 23.6 67 0.0023 34.4 4.5 36 509-554 151-186 (355)
307 2xu6_A MDV1 coiled coil; prote 23.4 43 0.0015 28.8 2.4 30 280-309 41-70 (72)
308 2ph3_A 3-oxoacyl-[acyl carrier 23.3 71 0.0024 29.8 4.3 25 527-551 7-31 (245)
309 2no2_A HIP-I, huntingtin-inter 23.3 3.3E+02 0.011 24.4 8.4 33 276-308 10-42 (107)
310 1t2a_A GDP-mannose 4,6 dehydra 23.2 71 0.0024 32.0 4.5 28 527-554 30-57 (375)
311 3gpi_A NAD-dependent epimerase 23.2 82 0.0028 30.3 4.8 25 531-555 12-36 (286)
312 3ghy_A Ketopantoate reductase 23.2 63 0.0021 32.8 4.1 33 511-554 3-35 (335)
313 2efl_A Formin-binding protein 23.1 5.3E+02 0.018 25.1 17.2 59 247-305 73-133 (305)
314 2efr_A General control protein 23.1 5E+02 0.017 24.8 15.6 72 324-401 19-90 (155)
315 1gqe_A Release factor 2, RF2; 23.0 2.4E+02 0.0083 30.4 8.7 20 197-216 25-44 (365)
316 1yb4_A Tartronic semialdehyde 22.9 37 0.0013 33.1 2.3 31 511-552 3-33 (295)
317 2ejb_A Probable aromatic acid 22.9 1E+02 0.0035 29.8 5.4 28 527-554 9-37 (189)
318 1sjj_A Actinin; 3-helix bundle 22.8 8.8E+02 0.03 27.6 22.0 20 169-188 373-392 (863)
319 4h22_A Leucine-rich repeat fli 22.8 1.7E+02 0.0057 26.7 6.3 27 249-275 57-83 (103)
320 3slg_A PBGP3 protein; structur 22.7 63 0.0022 32.3 4.0 28 527-554 30-58 (372)
321 2dq3_A Seryl-tRNA synthetase; 22.5 1.4E+02 0.0048 32.2 6.9 71 146-216 31-101 (425)
322 4hb9_A Similarities with proba 22.5 72 0.0025 31.6 4.3 29 512-551 2-30 (412)
323 1ik9_A DNA repair protein XRCC 22.3 4.3E+02 0.015 26.3 9.8 45 345-389 141-187 (213)
324 4dzn_A Coiled-coil peptide CC- 22.3 44 0.0015 24.4 1.9 26 246-271 5-30 (33)
325 1ses_A Seryl-tRNA synthetase; 22.0 1.6E+02 0.0054 31.9 7.1 20 200-219 5-24 (421)
326 3mtu_A Tropomyosin alpha-1 cha 22.0 1.2E+02 0.0041 25.6 4.9 46 262-310 7-52 (75)
327 2ahr_A Putative pyrroline carb 22.0 68 0.0023 30.8 3.9 34 510-554 2-35 (259)
328 3kdq_A Uncharacterized conserv 21.9 5.2E+02 0.018 24.6 11.1 115 287-406 10-146 (154)
329 2pms_C Pneumococcal surface pr 21.9 3.1E+02 0.011 25.7 8.1 40 262-308 49-88 (125)
330 3sc6_A DTDP-4-dehydrorhamnose 21.9 38 0.0013 32.5 2.1 32 527-558 11-42 (287)
331 4f2g_A Otcase 1, ornithine car 21.9 69 0.0023 33.6 4.2 36 509-554 152-187 (309)
332 2ef0_A Ornithine carbamoyltran 21.9 64 0.0022 33.7 3.9 37 509-555 152-188 (301)
333 1ydg_A Trp repressor binding p 21.8 1.2E+02 0.0041 28.2 5.5 39 510-553 5-43 (211)
334 3fgn_A Dethiobiotin synthetase 21.7 1.3E+02 0.0046 30.0 6.1 51 495-553 13-63 (251)
335 2xv5_A Lamin-A/C; structural p 21.7 1.5E+02 0.0052 25.1 5.5 39 380-418 4-42 (74)
336 3k96_A Glycerol-3-phosphate de 21.6 68 0.0023 33.5 4.1 34 510-554 28-61 (356)
337 2i6u_A Otcase, ornithine carba 21.6 93 0.0032 32.5 5.1 37 509-555 146-183 (307)
338 1yqg_A Pyrroline-5-carboxylate 21.5 72 0.0025 30.6 4.0 26 529-554 7-33 (263)
339 4gi5_A Quinone reductase; prot 21.5 1.1E+02 0.0037 31.4 5.5 39 509-551 20-59 (280)
340 4ekn_B Aspartate carbamoyltran 21.5 84 0.0029 32.8 4.7 36 509-554 149-187 (306)
341 3u59_A Tropomyosin beta chain; 21.4 4.1E+02 0.014 23.1 10.3 12 263-274 8-19 (101)
342 1ek6_A UDP-galactose 4-epimera 21.3 72 0.0025 31.3 4.0 27 527-553 8-34 (348)
343 2dwc_A PH0318, 433AA long hypo 21.0 1.3E+02 0.0044 31.3 6.0 36 508-554 16-51 (433)
344 3l77_A Short-chain alcohol deh 21.0 84 0.0029 29.4 4.2 28 527-554 8-35 (235)
345 3haj_A Human pacsin2 F-BAR; pa 20.9 8.1E+02 0.028 26.4 15.7 27 247-273 78-104 (486)
346 2dq0_A Seryl-tRNA synthetase; 20.8 3.8E+02 0.013 29.3 9.9 26 381-406 76-101 (455)
347 3fkq_A NTRC-like two-domain pr 20.8 1.3E+02 0.0046 31.0 6.1 40 507-552 138-179 (373)
348 2v4h_A NF-kappa-B essential mo 20.8 4.9E+02 0.017 23.9 9.4 82 335-426 26-110 (110)
349 2q1s_A Putative nucleotide sug 20.7 1E+02 0.0035 31.1 5.1 28 527-554 38-66 (377)
350 1wma_A Carbonyl reductase [NAD 20.6 98 0.0034 29.0 4.6 28 527-554 10-38 (276)
351 4hpq_C ATG17, KLTH0D15642P; au 20.6 8.5E+02 0.029 26.6 23.0 42 406-447 350-394 (413)
352 4emc_A Monopolin complex subun 20.5 1.1E+02 0.0037 30.5 4.9 64 160-227 35-98 (190)
353 3trt_A Vimentin; cytoskeleton, 20.4 2.6E+02 0.0089 22.9 6.6 42 323-367 31-73 (77)
354 4dk0_A Putative MACA; alpha-ha 20.4 2.4E+02 0.0083 28.5 7.8 23 356-378 97-119 (369)
355 2avr_X Adhesion A; antiparalle 20.4 3.8E+02 0.013 24.9 8.2 46 385-431 48-93 (119)
356 4dyl_A Tyrosine-protein kinase 20.4 2.1E+02 0.0071 30.4 7.5 89 290-393 304-392 (406)
357 3r7f_A Aspartate carbamoyltran 20.4 91 0.0031 32.6 4.7 37 509-554 145-182 (304)
358 2gt1_A Lipopolysaccharide hept 20.3 1.1E+02 0.0036 30.3 5.0 35 512-554 1-39 (326)
359 2vsy_A XCC0866; transferase, g 20.3 87 0.003 33.1 4.6 40 631-679 275-315 (568)
360 1ci6_A Transcription factor AT 20.3 61 0.0021 26.4 2.7 30 247-276 27-56 (63)
361 2v0o_A FCHO2, FCH domain only 20.1 5.9E+02 0.02 24.5 17.4 20 155-174 31-50 (276)
362 1kd8_B GABH BLL, GCN4 acid bas 20.1 85 0.0029 23.8 3.1 27 160-186 9-35 (36)
363 4gx0_A TRKA domain protein; me 20.0 73 0.0025 34.6 4.1 35 512-557 349-383 (565)
364 4h22_A Leucine-rich repeat fli 20.0 1.8E+02 0.0061 26.5 5.9 20 385-404 69-88 (103)
365 1uii_A Geminin; human, DNA rep 20.0 4.5E+02 0.015 23.1 8.1 34 323-366 28-62 (83)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=5.4e-42 Score=373.47 Aligned_cols=205 Identities=29% Similarity=0.460 Sum_probs=154.7
Q ss_pred CCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEE
Q 005005 506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNK 585 (720)
Q Consensus 506 ~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~ 585 (720)
..+++.|||||||+||+||+|||||||||++||+||+++||+|+||||+|+.+... . .........+.+....++
T Consensus 4 ~~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~-~----~~~~~~~~~~~~~~~~~~ 78 (536)
T 3vue_A 4 HHHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDA-W----DTSVVAEIKVADRYERVR 78 (536)
T ss_dssp ----CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTC-E----EEEEEEEEEETTEEEEEE
T ss_pred ccCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhh-c----ccceEEEEEecCceEEEE
Confidence 45788999999999999999999999999999999999999999999999987531 1 111112222344556788
Q ss_pred EEEEEeCCceEEecCCCCCCCCCCC------CCCCC------CcchHHHHHHHHHHHHHHHHhcC-----------CCCc
Q 005005 586 VWVSTIEGLPVYFIEPHHPDKFFWR------GQFYG------EHDDFRRFSFFSRAALELLLQAG-----------KQPD 642 (720)
Q Consensus 586 Vw~~~vdGVpVYFID~~~Pe~fF~R------~~IYG------~~DDaeRFafFSRAALElL~klg-----------~kPD 642 (720)
+|+...+||++|||+++ . ||.| +.+|| +.||.+||++||+|+++++..++ +.||
T Consensus 79 ~~~~~~~gv~~y~id~~--~-~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~dd 155 (536)
T 3vue_A 79 FFHCYKRGVDRVFIDHP--S-FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDV 155 (536)
T ss_dssp EEECEETTEEEEEEECT--T-TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCE
T ss_pred EEEEEECCceEEEecCh--h-hhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCE
Confidence 99999999999999965 3 7776 35786 36999999999999999987653 4578
Q ss_pred EEEECchhhhhHHHHHH-HhhCcC-CCCCCCEEEEecCCCccccCCccchhcCCCCccccCCCC---cccCCCCCCCCcc
Q 005005 643 IIHCHDWQTAFVAPLYW-DLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD---RMQDNSAHDRINP 717 (720)
Q Consensus 643 IIHcHDWHTALVaPLyL-k~y~~~-gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~l~~~D---~leD~~~~G~INf 717 (720)
||||||||||++ |+++ ..+... .+.++|+||||||++|||.|+...+..++++...+...+ .+....+++.+|+
T Consensus 156 IiH~hDW~t~l~-~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 234 (536)
T 3vue_A 156 VFVCNDWHTGPL-ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINW 234 (536)
T ss_dssp EEEEESGGGSTH-HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEH
T ss_pred EEEECcchHHHH-HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhH
Confidence 999999999999 5555 444433 357899999999999999999999999998875432222 2233346788899
Q ss_pred cC
Q 005005 718 LK 719 (720)
Q Consensus 718 LK 719 (720)
||
T Consensus 235 ~k 236 (536)
T 3vue_A 235 MK 236 (536)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.78 E-value=3.9e-18 Score=171.16 Aligned_cols=154 Identities=28% Similarity=0.450 Sum_probs=124.1
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEE
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~ 589 (720)
.+|||+||+.++.| ...||.+.++..|.++|+++||+|+|++|.|+...... +..+. . + +....+.++..
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~----~-~-~~~~~~~~~~~ 70 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEE---IGKIR----V-F-GEEVQVKVSYE 70 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEE---EEEEE----E-T-TEEEEEEEEEE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhh---hcccc----c-c-Ccccceeeeec
Confidence 47999999999999 78999999999999999999999999999987664321 11111 1 2 23445677777
Q ss_pred EeCCceEEecCCCCCCCCCCCCCCCC-Ccch-HHHHHHHHHHHHHHHHhc---CCCCcEEEECchhhhhHHHHHHHhhCc
Q 005005 590 TIEGLPVYFIEPHHPDKFFWRGQFYG-EHDD-FRRFSFFSRAALELLLQA---GKQPDIIHCHDWQTAFVAPLYWDLYVP 664 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R~~IYG-~~DD-aeRFafFSRAALElL~kl---g~kPDIIHcHDWHTALVaPLyLk~y~~ 664 (720)
..+|++++.+.. .+|.+..+|+ +.++ ..||.+|++++..+++.. .++|||||+|+|+++++ +.++...
T Consensus 71 ~~~gv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~-~~~~~~~-- 143 (439)
T 3fro_A 71 ERGNLRIYRIGG----GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFA-GALIKKY-- 143 (439)
T ss_dssp EETTEEEEEEES----GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHH-HHHHHHH--
T ss_pred cCCCceEEEecc----hhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhh-HHHHhhc--
Confidence 889999999985 2788888998 6788 899999999999999887 78999999999999987 4444322
Q ss_pred CCCCCCCEEEEecCCCccc
Q 005005 665 KGLNSARVCFTCHNFEYQG 683 (720)
Q Consensus 665 ~gf~~iptVFTIHNLaYQG 683 (720)
.++|+|+|+|+..+.+
T Consensus 144 ---~~~~~v~~~h~~~~~~ 159 (439)
T 3fro_A 144 ---FKIPAVFTIHRLNKSK 159 (439)
T ss_dssp ---HCCCEEEEESCCCCCC
T ss_pred ---cCCCEEEEeccccccc
Confidence 3689999999997543
No 3
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.74 E-value=8.3e-18 Score=174.49 Aligned_cols=176 Identities=26% Similarity=0.441 Sum_probs=127.4
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v 591 (720)
|||+||+.++.|..+.||.+.++..|+++|+++||+|+|++|.++..... ...+..+. .+...+++ ...++....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~-~~~~~~~~---~~~~~~~~~ 75 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKCF-EFTDLLGE---KADLLEVQH 75 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEEE-EESCSSSC---CEEEEEEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccccccc-ccccceeE-EEEEecCC---eEEEEEEEe
Confidence 89999999999987899999999999999999999999999987643210 01111110 01111111 134444556
Q ss_pred CCceEEecCCCCCCCCCCCC-CCCC------CcchHHHHHHHHHHHHHHHHhc--CCCCcEEEECchhhhhHHHHHHHhh
Q 005005 592 EGLPVYFIEPHHPDKFFWRG-QFYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWDLY 662 (720)
Q Consensus 592 dGVpVYFID~~~Pe~fF~R~-~IYG------~~DDaeRFafFSRAALElL~kl--g~kPDIIHcHDWHTALVaPLyLk~y 662 (720)
+||+++.+... .+|.+. .+|+ +.++..||.+|++++..+++.. ..+|||||+|+|+++++ +.++...
T Consensus 76 ~gv~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~-~~~~~~~ 151 (485)
T 1rzu_A 76 ERLDLLILDAP---AYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA 151 (485)
T ss_dssp TTEEEEEEECH---HHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS
T ss_pred cCceEEEEeCh---HHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHH-HHHHhhc
Confidence 89999998742 145444 2554 3578899999999999988766 67999999999999987 4444321
Q ss_pred CcCCCCCCCEEEEecCCCccccCCccchhcCCCCccc
Q 005005 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (720)
Q Consensus 663 ~~~gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~ 699 (720)
...++|+|+|+|+..++|.++...+..+|++...
T Consensus 152 ---~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~ 185 (485)
T 1rzu_A 152 ---ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHA 185 (485)
T ss_dssp ---SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGG
T ss_pred ---ccCCCCEEEEecCccccCCCCHHHHhhcCCChhh
Confidence 0146899999999999998887777777777654
No 4
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.72 E-value=1.3e-17 Score=173.06 Aligned_cols=174 Identities=26% Similarity=0.495 Sum_probs=124.6
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v 591 (720)
|||+||+.++.|+...||.+.++..|+++|+++||+|+|++|.++..... ........ ... .+++ ...+.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~-~~~-~~~~---~~~~~~~~~ 74 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVS-RRD-TFAG---HITLLFGHY 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHH-CTTCEEEE-EEC-CTTC---CEEEEEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccc-cccceeEE-Eec-ccCC---cEEEEEEEE
Confidence 89999999999987899999999999999999999999999987543210 01111100 000 1111 123444456
Q ss_pred CCceEEecCCCCCCCCCCCCC-CCC------CcchHHHHHHHHHHHHHHHHhcC--CCCcEEEECchhhhhHHHHHHHhh
Q 005005 592 EGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLY 662 (720)
Q Consensus 592 dGVpVYFID~~~Pe~fF~R~~-IYG------~~DDaeRFafFSRAALElL~klg--~kPDIIHcHDWHTALVaPLyLk~y 662 (720)
+||+++++... .+|.+.. +|+ +.++..||.+|++++..+++... .+|||||+|+|+++++ +.++...
T Consensus 75 ~gv~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~ 150 (485)
T 2qzs_A 75 NGVGIYLIDAP---HLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAAR 150 (485)
T ss_dssp TTEEEEEEECH---HHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHT
T ss_pred CCcEEEEEeCh---hhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhc
Confidence 89999998742 1455444 553 45788899999999988887654 7999999999999887 4443311
Q ss_pred CcCCCCCCCEEEEecCCCccccCCccchhcCCCCccc
Q 005005 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (720)
Q Consensus 663 ~~~gf~~iptVFTIHNLaYQGiFp~~~L~~lGLp~e~ 699 (720)
..++|+|+|+|+..++|.++...+..+|++...
T Consensus 151 ----~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
T 2qzs_A 151 ----GRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183 (485)
T ss_dssp ----TCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGG
T ss_pred ----cCCCCEEEEecCccccCCCCHHHHHhcCCCchh
Confidence 246899999999999988877666667777654
No 5
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.49 E-value=2.7e-15 Score=170.37 Aligned_cols=185 Identities=17% Similarity=0.145 Sum_probs=117.0
Q ss_pred EEE-EecccCCccccCCHHHHHHHHHHHHH-HCCCeEEEEecCCCccccccccccee------------eEEEEee-ecC
Q 005005 514 VIH-IAAEMAPVAKVGGLGDVVAGLGKALQ-KKGHLVEIVLPKYDCMQYDRIDDLRA------------LDVVVES-YFD 578 (720)
Q Consensus 514 ILf-VSSE~aPfAKVGGLGDVVgsLPKALa-~lGhEV~VILPkY~~I~~~~v~~L~~------------l~V~v~s-~f~ 578 (720)
.+| +|||+.- ||||+=.|+.+=++.++ +.|-+...|-|....-....+..+.+ +.-.+.. .-.
T Consensus 29 ~lfE~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (725)
T 3nb0_A 29 LLFETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESR 106 (725)
T ss_dssp EEEEEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTT
T ss_pred eEEeeehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHC
Confidence 555 9999887 89999999988777775 46889999999532211111110000 0000000 001
Q ss_pred CceeEEEEEEE--EeCCceE-EecCCCCCCCCCCC----------------CCCCCCcchHHHHHHHHHHHHHHHHhcC-
Q 005005 579 GRLFKNKVWVS--TIEGLPV-YFIEPHHPDKFFWR----------------GQFYGEHDDFRRFSFFSRAALELLLQAG- 638 (720)
Q Consensus 579 G~~~~v~Vw~~--~vdGVpV-YFID~~~Pe~fF~R----------------~~IYG~~DDaeRFafFSRAALElL~klg- 638 (720)
| ++|..| .++|-|. .++|.. .+|++ ...||+.||++||+||++++++.+...+
T Consensus 107 G----~~v~~GrW~i~G~P~viL~d~~---~~~~~~~~~~~~lw~~~~i~s~~~yg~~dd~~~F~y~~~avl~~l~~~~~ 179 (725)
T 3nb0_A 107 G----VHFVYGRWLIEGAPKVILFDLD---SVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDS 179 (725)
T ss_dssp T----CCEEEEEESSTTCCEEEEECSG---GGGGGHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred C----CeEEEEEEecCCCceEEEEeCh---HHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 1 223333 3567664 455642 24433 2346667999999999999999988777
Q ss_pred CCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCCC---c---cccCCcc-chhcCCCCccccCCCCcccCCCC
Q 005005 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFE---Y---QGTAPAK-ELASCGLDVQQLNRPDRMQDNSA 711 (720)
Q Consensus 639 ~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNLa---Y---QGiFp~~-~L~~lGLp~e~l~~~D~leD~~~ 711 (720)
+.|||+||||||||++ |.+++.. +.++++||||||+. | ||.++.. .+...+++.+.. .++ +
T Consensus 180 ~~pdIiH~HDW~tg~~-~~~Lk~~----~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~----~~~---i 247 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVA-LPLCRKR----RIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAG----RFG---I 247 (725)
T ss_dssp SEEEEEEEESGGGCTH-HHHHHHT----TCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHH----HTT---C
T ss_pred CCCcEEEeCchhhhHH-HHHHHHh----CCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhh----hhc---h
Confidence 7899999999999998 5665532 24799999999994 4 8988643 355556654321 122 4
Q ss_pred CCCCcccC
Q 005005 712 HDRINPLK 719 (720)
Q Consensus 712 ~G~INfLK 719 (720)
++.+|++|
T Consensus 248 ~~~~~~EK 255 (725)
T 3nb0_A 248 YHRYCIER 255 (725)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 55666665
No 6
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.28 E-value=1.4e-11 Score=141.79 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHHHHHHH-HHhc-----CC----CCcEEEECchhhhhHHHHHHHhhCc-C------CC--CCCCEEEEecCCCccc
Q 005005 623 FSFFSRAALEL-LLQA-----GK----QPDIIHCHDWQTAFVAPLYWDLYVP-K------GL--NSARVCFTCHNFEYQG 683 (720)
Q Consensus 623 FafFSRAALEl-L~kl-----g~----kPDIIHcHDWHTALVaPLyLk~y~~-~------gf--~~iptVFTIHNLaYQG 683 (720)
-.||+.|+++. ++.. ++ .||||||||||||+++|-+++.... . .+ .+..+|||+||+.+||
T Consensus 272 e~ff~~a~lq~ilr~~~~~~~~~~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~eg 351 (796)
T 1l5w_A 272 QYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEA 351 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhcCCccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhh
Confidence 38999999987 5533 24 7999999999999997745543211 0 11 4688999999999999
Q ss_pred c--CCccch
Q 005005 684 T--APAKEL 690 (720)
Q Consensus 684 i--Fp~~~L 690 (720)
. ||.+.+
T Consensus 352 le~wp~~l~ 360 (796)
T 1l5w_A 352 LERWDVKLV 360 (796)
T ss_dssp SCEEEHHHH
T ss_pred hhcCCHHHH
Confidence 7 766654
No 7
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.25 E-value=1.4e-11 Score=141.80 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=94.8
Q ss_pred cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccc-------c-------cc-----ceeeEEEEeeecCCceeEEE
Q 005005 525 AKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR-------I-------DD-----LRALDVVVESYFDGRLFKNK 585 (720)
Q Consensus 525 AKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~-------v-------~~-----L~~l~V~v~s~f~G~~~~v~ 585 (720)
.-.||||..++..-++++.+|..+.-+--+|..--..+ + .. +...++.+...|+|....+-
T Consensus 111 LgnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~ 190 (796)
T 2c4m_A 111 LGNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDMKTRAI 190 (796)
T ss_dssp CCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTEEEEEE
T ss_pred cCCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCccccCCCceeEecCCcEEEEEeCCEEEEEE
Confidence 36899999999999999999999999977775431110 0 00 00001111122344322111
Q ss_pred EEEEEeCC--------ceEEecCCCCCC--CCCCCC-----------------CCCCCcc----hHHHH---HHHHHHHH
Q 005005 586 VWVSTIEG--------LPVYFIEPHHPD--KFFWRG-----------------QFYGEHD----DFRRF---SFFSRAAL 631 (720)
Q Consensus 586 Vw~~~vdG--------VpVYFID~~~Pe--~fF~R~-----------------~IYG~~D----DaeRF---afFSRAAL 631 (720)
-+...+.| +.++-.++...- ..|..+ .+|+.+. -..|. .||+.|++
T Consensus 191 ~yd~pi~gy~~~~~n~lrlW~a~~~~~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~l 270 (796)
T 2c4m_A 191 PYDMPITGYGTHNVGTLRLWKAEPWEEFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASL 270 (796)
T ss_dssp EEEEEECCTTCCCCEEEEEEEEEESSSSCHHHHHTTCHHHHHHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCcCCCceEEEEEEecccccccchhhccCcchhhhhhchHhhhchhhcCcCCCCCcchHHHHHHhHHHHHHHHH
Confidence 11111112 112222211000 012222 4777531 13343 89999999
Q ss_pred HH-HHhc-----CC----CCcEEEECchhhhhHHHHHHHhhCc-CC------C--CCCCEEEEecCCCcccc--CCccch
Q 005005 632 EL-LLQA-----GK----QPDIIHCHDWQTAFVAPLYWDLYVP-KG------L--NSARVCFTCHNFEYQGT--APAKEL 690 (720)
Q Consensus 632 El-L~kl-----g~----kPDIIHcHDWHTALVaPLyLk~y~~-~g------f--~~iptVFTIHNLaYQGi--Fp~~~L 690 (720)
+. ++.. +| .||||||||||||+++|-+++...+ .+ + .+..+|||+||+.+||. ||.+.+
T Consensus 271 q~ilr~~~~~~~~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~ 350 (796)
T 2c4m_A 271 QAMIQDHLAHHKDLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIF 350 (796)
T ss_dssp HHHHHHHHHHSSCSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHH
T ss_pred HHHHHHHHHhCCChhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHH
Confidence 86 5532 24 7999999999999997745543211 11 1 35689999999999997 777655
Q ss_pred h
Q 005005 691 A 691 (720)
Q Consensus 691 ~ 691 (720)
.
T Consensus 351 ~ 351 (796)
T 2c4m_A 351 Q 351 (796)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.19 E-value=9.7e-12 Score=143.40 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=62.8
Q ss_pred ccCChhHHHHHHHHHHhh----------cCcchhhhHhhhhhchHHHHHhhhhcc-CCCCCCCceEEEEecccC-----C
Q 005005 460 KKLSTSEAKLLREMVWKR----------NGRIRDAYMECKEKNEHEAISTFLKLT-SSSISSGLHVIHIAAEMA-----P 523 (720)
Q Consensus 460 ~~i~~~~as~lr~~v~~~----------~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~k~~~MKILfVSSE~a-----P 523 (720)
++..+++...+++.+-++ .....+.|......--..+++...... ......+.+|.|+|+|+. |
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~~~~~w~~t~~~~~~~~~k~vyYlS~Efl~gr~L~ 85 (824)
T 2gj4_A 6 GLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQ 85 (824)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCEEEECCHH
T ss_pred cccccccHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEEchhhcchhhhH
Confidence 344556666666655432 344556666654444434444332111 111124678999999963 2
Q ss_pred ---------------------------------ccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 005005 524 ---------------------------------VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (720)
Q Consensus 524 ---------------------------------fAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~ 557 (720)
-.-.||||..++..-++++.+|....-+--+|..
T Consensus 86 n~l~nlg~~~~~~~~l~~~g~~l~~i~~~E~d~~LgnGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~ 152 (824)
T 2gj4_A 86 NTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEF 152 (824)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSB
T ss_pred HHHHHCCCHHHHHHHHHHhCCCHHHHHhcCCCcCcCCCcHHHHHHHHHHHHHhCCCCeEEEeecccC
Confidence 1458999999999999999999999999777754
No 9
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.17 E-value=3.6e-10 Score=114.97 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=84.2
Q ss_pred CCCCceEEEEecccCCcc-----ccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCcee
Q 005005 508 ISSGLHVIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 582 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfA-----KVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~ 582 (720)
..++|||+||+..+.|+. ..||.+.++..|.++|++.||+|+|+++..+.... . .
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~-------------~- 76 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQG------E-------------I- 76 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGC------S-------------E-
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCc------c-------------c-
Confidence 457899999999999864 47999999999999999999999999987532110 0 0
Q ss_pred EEEEEEEEeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHH-HHhcCCCCcEEEECchhhhhHHHHHHHh
Q 005005 583 KNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQTAFVAPLYWDL 661 (720)
Q Consensus 583 ~v~Vw~~~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALEl-L~klg~kPDIIHcHDWHTALVaPLyLk~ 661 (720)
....+|++++.+.... +.. ++..+-...+..|.+.++.+ ++... +|||||+|+|.+++++.++.+.
T Consensus 77 -----~~~~~~v~v~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Div~~~~~~~~~~~~~~~~~ 143 (438)
T 3c48_A 77 -----VRVAENLRVINIAAGP---YEG----LSKEELPTQLAAFTGGMLSFTRREKV-TYDLIHSHYWLSGQVGWLLRDL 143 (438)
T ss_dssp -----EEEETTEEEEEECCSC---SSS----CCGGGGGGGHHHHHHHHHHHHHHHTC-CCSEEEEEHHHHHHHHHHHHHH
T ss_pred -----ccccCCeEEEEecCCC---ccc----cchhHHHHHHHHHHHHHHHHHHhccC-CCCEEEeCCccHHHHHHHHHHH
Confidence 0123577777765311 100 01111111233455555555 44332 3999999999988763333222
Q ss_pred hCcCCCCCCCEEEEecCCC
Q 005005 662 YVPKGLNSARVCFTCHNFE 680 (720)
Q Consensus 662 y~~~gf~~iptVFTIHNLa 680 (720)
.++|+|+|+|+..
T Consensus 144 ------~~~p~v~~~h~~~ 156 (438)
T 3c48_A 144 ------WRIPLIHTAHTLA 156 (438)
T ss_dssp ------HTCCEEEECSSCH
T ss_pred ------cCCCEEEEecCCc
Confidence 2689999999984
No 10
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.14 E-value=3.7e-10 Score=118.22 Aligned_cols=137 Identities=17% Similarity=0.230 Sum_probs=88.1
Q ss_pred CceEEEEecccCCcc---------ccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCce
Q 005005 511 GLHVIHIAAEMAPVA---------KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRL 581 (720)
Q Consensus 511 ~MKILfVSSE~aPfA---------KVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~ 581 (720)
+|||++|+..++|.. ..||.+.++..|.++|++.||+|+|+++..+.... ... ....
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~---~~~-----------~~~~ 72 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENW---PEF-----------SGEI 72 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTB---GGG-----------CCSE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccc---cch-----------hhhH
Confidence 599999999988853 57999999999999999999999999986532110 000 0000
Q ss_pred eEEEEEEEE--eCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHH
Q 005005 582 FKNKVWVST--IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 659 (720)
Q Consensus 582 ~~v~Vw~~~--vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyL 659 (720)
... ..|++++.+... +..++.+..++ ..+..|...+..++++.+.+|||||+|.|.+++++.++.
T Consensus 73 ------~~~~~~~gv~v~~~~~~-~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~ 139 (499)
T 2r60_A 73 ------DYYQETNKVRIVRIPFG-GDKFLPKEELW------PYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLK 139 (499)
T ss_dssp ------EECTTCSSEEEEEECCS-CSSCCCGGGCG------GGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHH
T ss_pred ------HhccCCCCeEEEEecCC-CcCCcCHHHHH------HHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHH
Confidence 001 257777777532 11111111111 112234455666676655799999999999887633332
Q ss_pred HhhCcCCCCCCCEEEEecCCC
Q 005005 660 DLYVPKGLNSARVCFTCHNFE 680 (720)
Q Consensus 660 k~y~~~gf~~iptVFTIHNLa 680 (720)
+. .++|+|+|+|+..
T Consensus 140 ~~------~~~p~v~~~H~~~ 154 (499)
T 2r60_A 140 NI------KGLPFTFTGHSLG 154 (499)
T ss_dssp HH------HCCCEEEECSSCH
T ss_pred Hh------cCCcEEEEccCcc
Confidence 32 2689999999974
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.90 E-value=1.8e-08 Score=116.53 Aligned_cols=195 Identities=16% Similarity=0.169 Sum_probs=120.2
Q ss_pred HHHHHHHhhhhhhcccCChhHHHHHHHHHHhhcCcchhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecccC---
Q 005005 446 WSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA--- 522 (720)
Q Consensus 446 ws~lllrid~~~l~~~i~~~~as~lr~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~a--- 522 (720)
|++.-.++-.|=+++--. +.|...+++. ..-.++-+..|+..++.|.+.... .|+|+|||.-..
T Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~p~~~~~~~~~~~~~~----~~~i~~is~hg~~~~ 292 (816)
T 3s28_A 226 YEEFEAKFEEIGLERGWG-DNAERVLDMI--------RLLLDLLEAPDPCTLETFLGRVPM----VFNVVILSPHGYFAQ 292 (816)
T ss_dssp HHHHHHHHHHTTBCBCSC-SBHHHHHHHH--------HHHHHHHHSCCHHHHHHHHHHSCC----CCEEEEECCSSCCCS
T ss_pred HHHHHHHHHHhCCCCCcC-CcHHHHHHHH--------HHHHHHhcCCCcccHHHHhccCCc----eeEEEEEcCCcccCc
Confidence 677767777776655443 2355555654 133466788899999999865443 599999998765
Q ss_pred ----CccccCCHHHHHHH--------HHHHHHHCCCeEE----EEecCCCcccccccccceeeEEEEeeecCCceeEEEE
Q 005005 523 ----PVAKVGGLGDVVAG--------LGKALQKKGHLVE----IVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKV 586 (720)
Q Consensus 523 ----PfAKVGGLGDVVgs--------LPKALa~lGhEV~----VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~V 586 (720)
...-|||.-.+|-. |+++|+++||+|+ |++..++.... .. +......
T Consensus 293 ~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g--~~------------y~~~~e~--- 355 (816)
T 3s28_A 293 DNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVG--TT------------CGERLER--- 355 (816)
T ss_dssp SSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTT--SS------------TTSSEEE---
T ss_pred cccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCC--Cc------------cCCccee---
Confidence 11348998777774 6667788999887 88887653211 00 0000000
Q ss_pred EEEEeCCceEEecCCCCC----CCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhh
Q 005005 587 WVSTIEGLPVYFIEPHHP----DKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLY 662 (720)
Q Consensus 587 w~~~vdGVpVYFID~~~P----e~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y 662 (720)
....+|+.|+.+..... ..|+.+..++++-+ .|+..++..++...+.+|||||+|+|.+++++.++.+.
T Consensus 356 -i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~-----~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~- 428 (816)
T 3s28_A 356 -VYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLE-----TYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK- 428 (816)
T ss_dssp -CTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHH-----HHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH-
T ss_pred -ecCcCCeEEEEecCCCccccccccccHHHHHHHHH-----HHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH-
Confidence 00024566665542100 01344555554322 23445556666767789999999999999984433333
Q ss_pred CcCCCCCCCEEEEecCCCcc
Q 005005 663 VPKGLNSARVCFTCHNFEYQ 682 (720)
Q Consensus 663 ~~~gf~~iptVFTIHNLaYQ 682 (720)
.++|+|+|+|++...
T Consensus 429 -----~gvP~V~T~Hsl~~~ 443 (816)
T 3s28_A 429 -----LGVTQCTIAHALEKT 443 (816)
T ss_dssp -----HTCCEEEECSCCHHH
T ss_pred -----cCCCEEEEEeccccc
Confidence 269999999998543
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.36 E-value=1.1e-06 Score=86.97 Aligned_cols=46 Identities=28% Similarity=0.240 Sum_probs=39.3
Q ss_pred CceEEEEecc--------cCCc--cccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 511 GLHVIHIAAE--------MAPV--AKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 511 ~MKILfVSSE--------~aPf--AKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
+|||+||+.. +.|+ ...||.+.++..|.++|++.||+|.|+++..+
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 58 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGS 58 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTS
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5999999998 4333 34699999999999999999999999998743
No 13
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=98.33 E-value=2.2e-06 Score=85.65 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=37.7
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~ 556 (720)
.++|||+||+..+.| ..||.+.++..|.++|++.||+|.|+++...
T Consensus 18 ~~~MkIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 63 (406)
T 2gek_A 18 GSHMRIGMVCPYSFD--VPGGVQSHVLQLAEVLRDAGHEVSVLAPASP 63 (406)
T ss_dssp ---CEEEEECSSCTT--SCCHHHHHHHHHHHHHHHTTCEEEEEESCCT
T ss_pred CCcceEEEEeccCCC--CCCcHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 467999999965444 3699999999999999999999999998764
No 14
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=98.32 E-value=2.2e-06 Score=84.67 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=64.7
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~~v 591 (720)
|||+||+..+.| .||.+.++..|.++|++.||+|+|+++..... ..
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-------------------------------~~ 46 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGD-------------------------------CP 46 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSC-------------------------------CC
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCC-------------------------------CC
Confidence 899999998877 49999999999999999999999999863210 01
Q ss_pred CCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhh
Q 005005 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTA 652 (720)
Q Consensus 592 dGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTA 652 (720)
+|++++.+... . + .+..++..|.+.+..+++. .+|||||+|+|.++
T Consensus 47 ~~~~v~~~~~~--~-~----------~~~~~~~~~~~~l~~~i~~--~~~Dvv~~~~~~~~ 92 (374)
T 2iw1_A 47 KAFELIQVPVK--S-H----------TNHGRNAEYYAWVQNHLKE--HPADRVVGFNKMPG 92 (374)
T ss_dssp TTCEEEECCCC--C-S----------SHHHHHHHHHHHHHHHHHH--SCCSEEEESSCCTT
T ss_pred CCcEEEEEccC--c-c----------cchhhHHHHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence 35666666421 0 1 1223444555666666654 48999999997654
No 15
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=98.23 E-value=4.7e-06 Score=82.69 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=74.9
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEE
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~ 589 (720)
++|||++|+..+.|. .||.+.++..|.++| .||+|+|+++..+...... +.
T Consensus 3 ~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~--------------~~----------- 53 (394)
T 3okp_A 3 ASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHA--------------YD----------- 53 (394)
T ss_dssp -CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHH--------------HH-----------
T ss_pred CCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhh--------------hc-----------
Confidence 579999999988885 799999999999999 6999999999765321000 00
Q ss_pred EeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCC
Q 005005 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ 669 (720)
...|++++.+... . ++ .. ..+.+.+..++++ .+|||||+|++........+.+.+ +
T Consensus 54 ~~~~~~~~~~~~~--~-~~------~~-------~~~~~~l~~~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~------~ 109 (394)
T 3okp_A 54 KTLDYEVIRWPRS--V-ML------PT-------PTTAHAMAEIIRE--REIDNVWFGAAAPLALMAGTAKQA------G 109 (394)
T ss_dssp TTCSSEEEEESSS--S-CC------SC-------HHHHHHHHHHHHH--TTCSEEEESSCTTGGGGHHHHHHT------T
T ss_pred cccceEEEEcccc--c-cc------cc-------hhhHHHHHHHHHh--cCCCEEEECCcchHHHHHHHHHhc------C
Confidence 1134555555421 0 11 10 1334455556654 479999999876643212333321 3
Q ss_pred C-CEEEEecCCC
Q 005005 670 A-RVCFTCHNFE 680 (720)
Q Consensus 670 i-ptVFTIHNLa 680 (720)
+ ++|+|+|+..
T Consensus 110 ~~~~i~~~h~~~ 121 (394)
T 3okp_A 110 ASKVIASTHGHE 121 (394)
T ss_dssp CSEEEEECCSTH
T ss_pred CCcEEEEeccch
Confidence 5 5899999864
No 16
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.17 E-value=9.4e-07 Score=89.80 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
++|||+||+.. | ..||.+.++..|.++|++.||+|.|+++..
T Consensus 39 ~~mkIl~v~~~--~--~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~ 80 (416)
T 2x6q_A 39 KGRSFVHVNST--S--FGGGVAEILHSLVPLLRSIGIEARWFVIEG 80 (416)
T ss_dssp TTCEEEEEESC--S--SSSTHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred hccEEEEEeCC--C--CCCCHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 46999999875 2 479999999999999999999999998753
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=98.16 E-value=7.2e-06 Score=81.38 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=32.4
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
+|||++++. -+||-..++..|.++|++.||+|.|+++..
T Consensus 6 ~mkIl~~~~------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 44 (364)
T 1f0k_A 6 GKRLMVMAG------GTGGHVFPGLAVAHHLMAQGWQVRWLGTAD 44 (364)
T ss_dssp -CEEEEECC------SSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CcEEEEEeC------CCccchhHHHHHHHHHHHcCCEEEEEecCC
Confidence 399999972 247777777899999999999999999864
No 18
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=98.14 E-value=1e-05 Score=81.60 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcccccccccceeeEEEEeeecCCceeEEEEEEE
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I~~~~v~~L~~l~V~v~s~f~G~~~~v~Vw~~ 589 (720)
..|+.-+.+..+ |. .||.+.++..|.++|+++||+|.|+++..+.... .
T Consensus 12 ~~~~~~~~~~~~-p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~----------------------------~ 60 (394)
T 2jjm_A 12 HHMKLKIGITCY-PS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN----------------------------K 60 (394)
T ss_dssp ---CCEEEEECC-C----CHHHHHHHHHHHHHHHTTCEEEEECSSCC--------------------------------C
T ss_pred hhheeeeehhcC-CC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc----------------------------c
Confidence 346655555554 53 6999999999999999999999999986431100 0
Q ss_pred EeCCceEEecCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCC
Q 005005 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (720)
Q Consensus 590 ~vdGVpVYFID~~~Pe~fF~R~~IYG~~DDaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~ 669 (720)
..+|+.++.+...... .|.+. . .. ..+.+.+..+++. .+|||||+|.+.+..++.++...... .+
T Consensus 61 ~~~~i~~~~~~~~~~~-~~~~~-~-------~~-~~~~~~l~~~l~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~---~~ 125 (394)
T 2jjm_A 61 VYPNIYFHEVTVNQYS-VFQYP-P-------YD-LALASKMAEVAQR--ENLDILHVHYAIPHAICAYLAKQMIG---ER 125 (394)
T ss_dssp CCTTEEEECCCCC-----CCSC-C-------HH-HHHHHHHHHHHHH--HTCSEEEECSSTTHHHHHHHHHHHTT---TC
T ss_pred cCCceEEEeccccccc-ccccc-c-------cc-HHHHHHHHHHHHH--cCCCEEEEcchhHHHHHHHHHHHhhc---CC
Confidence 0123333333311000 11111 0 01 1233444555553 58999999987654332333232211 25
Q ss_pred CCEEEEecCC
Q 005005 670 ARVCFTCHNF 679 (720)
Q Consensus 670 iptVFTIHNL 679 (720)
+|+|+|+|+.
T Consensus 126 ~p~v~~~h~~ 135 (394)
T 2jjm_A 126 IKIVTTLHGT 135 (394)
T ss_dssp SEEEEECCHH
T ss_pred CCEEEEEecC
Confidence 8999999985
No 19
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=97.30 E-value=0.0004 Score=72.38 Aligned_cols=40 Identities=5% Similarity=-0.121 Sum_probs=28.3
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
..+|||++|+...+| ...||-+ ..+.+.|+++| +|+|+..
T Consensus 12 ~~~MkIl~is~~~~p-~~~~~~~---~~l~~~l~~~G-~V~vi~~ 51 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFR-TPRRANI---HFITDQLALRG-TTRFFSL 51 (406)
T ss_dssp -CCSCEEEEESSCTT-SSSCCHH---HHHHHHHHHHS-CEEEEEC
T ss_pred CCCceEEEEecccCC-ChhhhhH---hHHHHHHHhCC-ceEEEEe
Confidence 346999999987455 3345544 34667888999 9999943
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.27 E-value=0.00022 Score=85.34 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=30.2
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 005005 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (720)
Q Consensus 131 ~~~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~ 185 (720)
.+++.+-.-+..++.++..+.+.+..+-+.++++..++++++.++.....++++.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~ 911 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEA 911 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555565666666666666655555554555555555555555554444444333
No 21
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=97.20 E-value=0.0026 Score=64.77 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCCceEEEEecccCCccccCCHHHHHH--HHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVA--GLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVg--sLPKALa~lGhEV~VILPk 554 (720)
+.+|||+|++ .||.|++.. .|.++|+++||+|+++++.
T Consensus 18 ~~m~rIl~~~--------~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~ 57 (415)
T 3rsc_A 18 RHMAHLLIVN--------VASHGLILPTLTVVTELVRRGHRVSYVTAG 57 (415)
T ss_dssp -CCCEEEEEC--------CSCHHHHGGGHHHHHHHHHTTCEEEEEECG
T ss_pred ccCCEEEEEe--------CCCccccccHHHHHHHHHHCCCEEEEEeCH
Confidence 4679999986 367777754 5678999999999999964
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.16 E-value=0.00059 Score=81.73 Aligned_cols=12 Identities=42% Similarity=0.426 Sum_probs=4.5
Q ss_pred hhhhhhHHHhhh
Q 005005 171 LQGEINALEMRL 182 (720)
Q Consensus 171 lq~~~~~l~~~l 182 (720)
|+.+++.++..|
T Consensus 890 Le~e~~~l~~~L 901 (1184)
T 1i84_S 890 LCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 23
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=97.08 E-value=0.0016 Score=65.89 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 505 SSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 505 ~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+..+..+|||++++.. +||---.+..|.++|+++||+|+|+++.
T Consensus 14 ~~~~~~~MrIl~~~~~------~~Gh~~~~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 14 GHIEGRHMRVLFASLG------THGHTYPLLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp ----CCSCEEEEECCS------SHHHHGGGHHHHHHHHHTTCEEEEEECG
T ss_pred CCcccceeEEEEEcCC------CcccHHHHHHHHHHHHHCCCEEEEEccH
Confidence 3445677999999722 2333333467899999999999999985
No 24
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=97.08 E-value=0.0018 Score=65.98 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=29.0
Q ss_pred CCCCCceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEec
Q 005005 507 SISSGLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 507 ~k~~~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILP 553 (720)
....+|||+|++. ||.|.+ +..|.++|++.||+|+|+.|
T Consensus 16 ~~~~~MrIl~~~~--------~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 16 IEGRHMRVLFVSS--------PGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp ---CCCEEEEECC--------SSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhhhcCEEEEEcC--------CCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 3456699999974 234433 56788999999999999998
No 25
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=97.01 E-value=0.0058 Score=61.26 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=27.8
Q ss_pred CceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPk 554 (720)
+|||+|++. ||-|++ +..|.++|+++||+|+++++.
T Consensus 4 M~~il~~~~--------~~~Ghv~~~~~La~~L~~~GheV~v~~~~ 41 (402)
T 3ia7_A 4 QRHILFANV--------QGHGHVYPSLGLVSELARRGHRITYVTTP 41 (402)
T ss_dssp CCEEEEECC--------SSHHHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCEEEEEeC--------CCCcccccHHHHHHHHHhCCCEEEEEcCH
Confidence 349999873 455555 456789999999999999974
No 26
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=97.00 E-value=0.0024 Score=64.87 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCCCCCceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecC
Q 005005 505 SSSISSGLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 505 ~~~k~~~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPk 554 (720)
...+..+|||+|++. ||-|.+ +..|.++|+++||+|+|+++.
T Consensus 9 ~~~~~~~MrIl~~~~--------~~~gh~~~~~~La~~L~~~GheV~v~~~~ 52 (398)
T 4fzr_A 9 GVPRGSHMRILVIAG--------CSEGFVMPLVPLSWALRAAGHEVLVAASE 52 (398)
T ss_dssp ------CCEEEEECC--------SSHHHHGGGHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCCCceEEEEEcC--------CCcchHHHHHHHHHHHHHCCCEEEEEcCH
Confidence 344567899999974 344444 457899999999999999874
No 27
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=96.89 E-value=0.004 Score=62.84 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=28.2
Q ss_pred CceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPk 554 (720)
+|||+|++. ||-|.+ +..|.++|+++||+|+|+.+.
T Consensus 1 ~MrIl~~~~--------~~~gh~~~~~~la~~L~~~GheV~v~~~~ 38 (391)
T 3tsa_A 1 HMRVLVVPL--------PYPTHLMAMVPLCWALQASGHEVLIAAPP 38 (391)
T ss_dssp CCEEEEECC--------SCHHHHHTTHHHHHHHHHTTCEEEEEECH
T ss_pred CcEEEEEcC--------CCcchhhhHHHHHHHHHHCCCEEEEecCh
Confidence 499999974 344444 456889999999999999873
No 28
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=96.88 E-value=0.0026 Score=64.41 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=34.9
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||++|+.. .|. .||.+.++..|.++|++. |+|+|+.+.-
T Consensus 1 MkI~~v~~~-~p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~ 40 (413)
T 3oy2_A 1 MKLIIVGAH-SSV--PSGYGRVMRAIVPRISKA-HEVIVFGIHA 40 (413)
T ss_dssp CEEEEEEEC-TTC--CSHHHHHHHHHHHHHTTT-SEEEEEEESC
T ss_pred CeEEEecCC-CCC--CCCHHHHHHHHHHHHHhc-CCeEEEeecC
Confidence 899999864 464 599999999999999999 9999998653
No 29
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.58 E-value=0.0066 Score=71.15 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=30.1
Q ss_pred ccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 005005 524 VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (720)
Q Consensus 524 fAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~ 557 (720)
-.-.||||..++..-++++.+|....-+--+|..
T Consensus 160 ~LGnGGLGrLAacfLdS~AtLglP~~GyGlrY~~ 193 (879)
T 1ygp_A 160 GLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEY 193 (879)
T ss_dssp CSCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CcCCCcHHHHHHHHHHHHHhCCCCeEEEEeeecC
Confidence 4568999999999999999999999999777754
No 30
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.57 E-value=0.5 Score=44.22 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 005005 145 KNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (720)
Q Consensus 145 ~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~ 185 (720)
|+|.-|+.--..+...++.+-.+.+.++.++..++..+.+.
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433433333333333333333444444444444443333
No 31
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=96.46 E-value=0.018 Score=59.65 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=27.8
Q ss_pred ceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPk 554 (720)
|||++++. |+.|+| +-.|.++|+++||+|+|++|.
T Consensus 1 MrIli~~~--------gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 1 MGVLITGC--------GSRGDTEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp -CEEEEEE--------SSHHHHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred CeEEEEeC--------CCCccHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 89999873 556666 457889999999999999985
No 32
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=96.27 E-value=0.013 Score=58.53 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=25.5
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCC-eEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH-LVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGh-EV~VILPk 554 (720)
|||++++.+. | +.+ .+..|.++|++.|+ +|.|+...
T Consensus 1 mkIl~v~~~~-~-----~~~-~~~~l~~~L~~~g~~~~~v~~~~ 37 (384)
T 1vgv_A 1 MKVLTVFGTR-P-----EAI-KMAPLVHALAKDPFFEAKVCVTA 37 (384)
T ss_dssp CEEEEEECSH-H-----HHH-HHHHHHHHHHHSTTCEEEEEECC
T ss_pred CeEEEEeccc-H-----HHH-HHHHHHHHHHhCCCCceEEEEcC
Confidence 8999998763 1 111 24678899999995 89887653
No 33
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=95.89 E-value=0.051 Score=55.67 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=28.9
Q ss_pred CceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPkY 555 (720)
+|||++++. ||-|++ +-.|.++|+++||+|+++.+..
T Consensus 7 m~kIl~~~~--------~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~ 45 (430)
T 2iyf_A 7 PAHIAMFSI--------AAHGHVNPSLEVIRELVARGHRVTYAIPPV 45 (430)
T ss_dssp -CEEEEECC--------SCHHHHGGGHHHHHHHHHTTCEEEEEECGG
T ss_pred cceEEEEeC--------CCCccccchHHHHHHHHHCCCeEEEEeCHH
Confidence 589999752 445554 5789999999999999999864
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.81 E-value=0.31 Score=49.10 Aligned_cols=54 Identities=7% Similarity=0.177 Sum_probs=34.1
Q ss_pred hhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 252 ~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
...+..+=..++.-|...+.++..++ +.+-+..|.+|-..++..+..+|.++..
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555666677777776 4445667778877777777777776654
No 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.81 E-value=0.7 Score=61.20 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH-HhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc
Q 005005 157 ALEDLHKILQEKE-ALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 157 a~~~~~~~~~ek~-~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (720)
-+.-..+++.+|. +++.+++-|+.=|..- .-| ...|+-+..+|+.++.+|.++
T Consensus 1900 li~~y~~ll~~K~~el~~~~~rl~~GL~KL----~et---~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKL----RDT---EAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666653 4555555555433322 111 234556666677666666664
No 36
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=95.74 E-value=0.032 Score=55.30 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=24.2
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHC-C-CeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-G-HLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-G-hEV~VILPkY 555 (720)
+|||++++.. .|- .||. ..+.++|++. | ++|.++++..
T Consensus 8 ~mkIl~v~~~-~~~--~~~~----~~l~~~L~~~~~~~~v~~~~~~~ 47 (375)
T 3beo_A 8 RLKVMTIFGT-RPE--AIKM----APLVLELQKHPEKIESIVTVTAQ 47 (375)
T ss_dssp CEEEEEEECS-HHH--HHHH----HHHHHHHTTCTTTEEEEEEECCS
T ss_pred CceEEEEecC-cHH--HHHH----HHHHHHHHhCCCCCCeEEEEcCC
Confidence 4999999865 231 2443 4555666665 4 8888776543
No 37
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=95.69 E-value=0.016 Score=63.18 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 619 DFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 619 DaeRFafFSRAALElL~klg~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
+..-|.-+++..++.+...-..+||||+||||..++ |.+++.. ..++|++||+|+.
T Consensus 102 ~w~~y~~vN~~fa~~l~~~~~~~DiV~vHdyhl~~l-~~~lr~~----~~~~~i~~~~H~p 157 (482)
T 1uqt_A 102 AWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPF-AHELRKR----GVNNRIGFFLHIP 157 (482)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCTTCEEEEESGGGTTH-HHHHHHT----TCCSCEEEECCSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEECchHHHH-HHHHHHh----CCCCcEEEEEcCC
Confidence 334455567776766655444679999999999887 5555432 2368999999985
No 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.68 E-value=0.088 Score=63.19 Aligned_cols=130 Identities=17% Similarity=0.272 Sum_probs=53.6
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhh-hhh---h----HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 005005 253 DSLKTENLSLKNDIKVLKAELNSVK-DAD---E----RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (720)
Q Consensus 253 ~~~~~en~~~k~~~~~~k~~~~~~~-~~~---~----~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 324 (720)
..|++.|..|.+.++.|...|.+.. +.. + --..+++|.+.|+..+.+||..... ...++.+.+.+
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e-------~~~~~~~v~~L 989 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-------AKNATNRVLSL 989 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3444555556666665555554321 111 0 0124566666676666666663211 11223333344
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 325 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
-++++.|+..+.++++ +..+++.+.+.+++.|+ .| ..+|++.|..|+|++..+|..+....+++
T Consensus 990 ~~e~~~l~~~~~~~~k----------e~~~lee~~~~~~~~L~----~k--v~~L~~e~~~L~qq~~~l~~~~~~~~~~~ 1053 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQT----------EKKTIEEWADKYKHETE----QL--VSELKEQNTLLKTEKEELNRRIHDQAKEI 1053 (1080)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544333 34444555566655555 11 22355567788888888887666665554
Q ss_pred H
Q 005005 405 H 405 (720)
Q Consensus 405 ~ 405 (720)
-
T Consensus 1054 ~ 1054 (1080)
T 2dfs_A 1054 T 1054 (1080)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.57 E-value=0.059 Score=64.62 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=44.1
Q ss_pred hhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 005005 254 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (720)
Q Consensus 254 ~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (720)
.+..|.-.|+.|++.|+....+..++++.+..|++|-+.|+..+..+.+.....++...++. . +|.+||.+|+.
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~---~L~~kv~~L~~ 1030 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---H---ETEQLVSELKE 1030 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHH
Confidence 34455666667777777766666666666777777766666666655554444443333332 1 34455555554
Q ss_pred HHHH
Q 005005 334 LLAK 337 (720)
Q Consensus 334 ~l~~ 337 (720)
...+
T Consensus 1031 e~~~ 1034 (1080)
T 2dfs_A 1031 QNTL 1034 (1080)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 40
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=95.27 E-value=0.0076 Score=63.51 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 507 SISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 507 ~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
.+..+|||++|+..+.|-...||.. ++..|.++|+++||+|+|++|.+
T Consensus 42 ~~~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 42 SSIKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CCCCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCCCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecC
Confidence 3457799999999998854568886 58899999999999999999975
No 41
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=95.24 E-value=0.12 Score=51.61 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=25.9
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHC-CCeEEEEec
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLP 553 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-GhEV~VILP 553 (720)
.+|||++++.+... .|+ +..|.++|.+. ||+|.+++.
T Consensus 4 ~mmkIl~v~~~~~~---~~~----~~~l~~~L~~~~g~~v~~~~~ 41 (376)
T 1v4v_A 4 GMKRVVLAFGTRPE---ATK----MAPVYLALRGIPGLKPLVLLT 41 (376)
T ss_dssp CCEEEEEEECSHHH---HHH----HHHHHHHHHTSTTEEEEEEEC
T ss_pred CceEEEEEEeccHH---HHH----HHHHHHHHHhCCCCceEEEEc
Confidence 35999999876322 233 35677888888 799887765
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.88 E-value=0.85 Score=45.88 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=75.4
Q ss_pred HhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 005005 272 ELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDLYEKVENLQGLLAKATKQADQAIS 347 (720)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 347 (720)
.|..+...|.++..|+.++..|-..|.+|+..+...+..+..+ ..++.+.+.+=..++.++..+++..++-+++ .
T Consensus 9 ~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-~ 87 (256)
T 3na7_A 9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-K 87 (256)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-C
Confidence 3556677777777777777777777777777766665554432 2333344444444555555555554444322 2
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHH---HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN---ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (720)
.-.+.+.|++.++.++....... +.+.... +-++..++.++.++.....++.....-+...+.+....+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE------~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~ 161 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQAN------REIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555555555543332221 1111111 22233444444444444444444444444455555555555
Q ss_pred hHHhhh
Q 005005 425 LKEESK 430 (720)
Q Consensus 425 ~~~~~~ 430 (720)
+....+
T Consensus 162 l~~~r~ 167 (256)
T 3na7_A 162 IFKKKE 167 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 43
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=94.61 E-value=0.055 Score=54.53 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=28.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||++++. | +||--..+..|.++|+++||+|+++.+.
T Consensus 1 MrIl~~~~---~---~~Gh~~p~~~la~~L~~~Gh~V~~~~~~ 37 (384)
T 2p6p_A 1 MRILFVAA---G---SPATVFALAPLATAARNAGHQVVMAANQ 37 (384)
T ss_dssp CEEEEECC---S---SHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CEEEEEeC---C---ccchHhHHHHHHHHHHHCCCEEEEEeCH
Confidence 89999853 2 2343344567899999999999999875
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.89 E-value=2 Score=42.58 Aligned_cols=170 Identities=22% Similarity=0.263 Sum_probs=90.6
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHH-HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV-VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~-~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 325 (720)
|..+|+.-.|+.=..++..+..++.+|+++.+--.-+ ..||+|-..+++.+++|.++. ..|+.|+-.|-
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~----------~~L~~E~e~~k 76 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----------QRLKYEVEALK 76 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 5678899999999999999999999999987654433 345555555666666665544 35667777777
Q ss_pred HHHHHHHHHHHHHhhhhhhHHH-HhhhhHHHHHHHHHHHHH---HhH-hhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 326 EKVENLQGLLAKATKQADQAIS-VLQQNQELRKKVDKLEES---LDE-ANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~l~~~~d~l~~~---l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
+|.+..+.-..++.+....=+. .-..++.|+.++-+||-. |+. +-+.-.|.+.+++-....=++...||.-+.+
T Consensus 77 ~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E- 155 (189)
T 2v71_A 77 EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE- 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7777766554443333322221 223455555555444421 222 2233344555655555555677788877764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 005005 401 DEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAV 434 (720)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 434 (720)
... -+..+.++.+.+..||.|-..+..
T Consensus 156 ----Ke~---l~~~~QRLkdE~rDLk~El~v~~~ 182 (189)
T 2v71_A 156 ----KES---LLVSVQRLKDEARDLRQELAVRER 182 (189)
T ss_dssp ----HHH---HHCCC-------------------
T ss_pred ----HHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 156778888888888888776443
No 45
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=93.85 E-value=0.58 Score=48.14 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.9
Q ss_pred cCCHHHH---HHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDV---VAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDV---VgsLPKALa~lGhEV~VILPk 554 (720)
.||-|=+ +-+|.++|.++||+|..+.-.
T Consensus 9 ~GGTgGHi~palala~~L~~~g~~V~~vg~~ 39 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQARGYAVHWLGTP 39 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3676434 457889999999999988643
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.05 E-value=4.1 Score=39.81 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=91.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 005005 268 VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAIS 347 (720)
Q Consensus 268 ~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 347 (720)
.||++-..++..-+....+-+-.+.++.+++||..+... |+-.+..|-..+.+||+.|+.=...-.++-
T Consensus 21 kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~----------L~~~k~~Leke~~~LQa~L~qEr~~r~q~s- 89 (168)
T 3o0z_A 21 LLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI----------LENSKSQTDKDYYQLQAILEAERRDRGHDS- 89 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345554444444444445555566678888887766543 445566788899999999987554433332
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHH
Q 005005 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD----EEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 421 (720)
+--.||+.+|..|++-|+.. |.+-.++.--|-.|++++-.||..--.-. -++++-=+-|++.|.+-|.|
T Consensus 90 --e~~~elq~ri~~L~~El~~~---k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 90 --EMIGDLQARITSLQEEVKHL---KHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVT 162 (168)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred --HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22346677777777766654 33445555667899999999987544333 67888888899999998877
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.58 E-value=0.99 Score=40.15 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=56.8
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---HHHh-hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHH----HHH
Q 005005 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQA---ISVL-QQNQELRKKVDKLEESLDEANIYKLSSEKMQQ----YNE 384 (720)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~-~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~----~~~ 384 (720)
|+..|+.|.-++-++++.++.-+..+...+.++ |..| ..++-+...+|++++.|.+|+-.-...++... -+.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~ 89 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888899999999998887776655443 3344 35667777788888888777655444454444 556
Q ss_pred HHHHHHHHHHH
Q 005005 385 LMQQKMKLLEE 395 (720)
Q Consensus 385 ~~~~~~~~~~~ 395 (720)
-|..||.+||+
T Consensus 90 ~L~RriqllEE 100 (101)
T 3u1c_A 90 SLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcc
Confidence 66666666664
No 48
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=90.80 E-value=0.25 Score=49.70 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCceEEEEecccCCccccCCHHHHHH--HHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVA--GLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVg--sLPKALa~lGhEV~VILPk 554 (720)
+.|||||++ .||.|.+.- .|.++|+++||+|+++++.
T Consensus 21 ~~MRIL~~~--------~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~ 59 (400)
T 4amg_A 21 QSMRALFIT--------SPGLSHILPTVPLAQALRALGHEVRYATGG 59 (400)
T ss_dssp CCCEEEEEC--------CSSHHHHGGGHHHHHHHHHTTCEEEEEECS
T ss_pred CCCeEEEEC--------CCchhHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 569999985 367777754 6789999999999999874
No 49
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.05 E-value=5.5 Score=53.19 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhc----hhhhh-------hHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhh
Q 005005 158 LEDLHKILQEKEALQGEINALEMRLAE----TDARI-------RVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDV 226 (720)
Q Consensus 158 ~~~~~~~~~ek~~lq~~~~~l~~~l~e----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
|+.|...-..-+.||.++..++-.|++ +++-+ ..|.+.|..|+-.++++++-..+++.+... ..-
T Consensus 1926 L~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~----~e~ 2001 (3245)
T 3vkg_A 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVK----AYA 2001 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 444444444555555555555444443 33222 223344445555555555555555443221 111
Q ss_pred hhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHH-------hhhhhHHhhHHH
Q 005005 227 FANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLE-------MERSSLESSLKE 299 (720)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~-------~e~~~l~~~~~~ 299 (720)
-+.+..|+ .|+-+++..+.++-...++.+...+++|.++ ++++..|. +|...|+..+..
T Consensus 2002 dL~~A~Pa-----------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~l---e~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2002 DLEKAEPT-----------GPLREEVEQLENAANELKLKQDEIVATITAL---EKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp CC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445565 4778888888777666666666666655444 44454444 455667888888
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 005005 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 340 (720)
Q Consensus 300 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 340 (720)
.+.|+..|+.=+..|+.=+. .|-+.++.|+..+.+..-
T Consensus 2068 ~~~kl~rA~~Li~gL~~Ek~---RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2068 VKNKVDRSIALLDNLNSERG---RWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHhccH
Confidence 88888888877766665444 688889998876555433
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=89.39 E-value=3.4 Score=42.42 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=27.7
Q ss_pred ceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPk 554 (720)
|||++++. |+.|.+ +-.|.++|+++||+|+++.+.
T Consensus 1 MrIl~~~~--------~~~GH~~p~l~la~~L~~~Gh~V~~~~~~ 37 (416)
T 1rrv_A 1 MRVLLSVC--------GTRGDVEIGVALADRLKALGVQTRMCAPP 37 (416)
T ss_dssp CEEEEEEE--------SCHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEec--------CCCccHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 89999852 455555 556889999999999999885
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.12 E-value=3.7 Score=44.59 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=9.1
Q ss_pred HHHHHhhhhhHHhhHHHHHhhh
Q 005005 283 VVMLEMERSSLESSLKELESKL 304 (720)
Q Consensus 283 ~~~~~~e~~~l~~~~~~~e~~~ 304 (720)
+..|+.|....++.++.++.++
T Consensus 465 i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 465 VQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 52
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.18 E-value=2.9 Score=36.98 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=38.4
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH---HHh-hhhHHHHHHHHHHHHHHhHhh
Q 005005 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAI---SVL-QQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~-~~~~~l~~~~d~l~~~l~~~~ 370 (720)
|+..|+.|.-++-++++.++.-+..+...+.++- ..| ..++-++..+|+.++.|..++
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888999999999998888776666542 222 234445555555555555554
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.44 E-value=5.3 Score=43.42 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 005005 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (720)
Q Consensus 350 ~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (720)
.+.+.++++++++|.-+++.. -.-..++|.+..+.+++|.+++.+++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~---~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKR---AKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cchhhHHhhhHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445666677777777776653 23355677788888999999887764
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.59 E-value=4.4 Score=37.18 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=29.4
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 269 LKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 269 ~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
|.++-...++.+++...|-+.+.-|++.|++|++++..
T Consensus 57 L~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 57 VQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777899999999999999999998877654
No 55
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=80.84 E-value=53 Score=36.28 Aligned_cols=173 Identities=25% Similarity=0.371 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH-HHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCc
Q 005005 156 QALEDLHKILQEKEALQGEINA-LEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPA 234 (720)
Q Consensus 156 ~a~~~~~~~~~ek~~lq~~~~~-l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (720)
.|-.||+|-|...|-|..|+.. ||.| +...-||..-||.+-. .|++=.|-++=+++...
T Consensus 354 kaqkdlekslrkrehlekev~kkle~~-~~nkn~meakaqansq----kd~ifalin~ea~kear--------------- 413 (569)
T 4dvz_A 354 KAQKDLEKSLRKREHLEKEVEKKLESK-SGNKNKMEAKAQANSQ----KDEIFALINKEANRDAR--------------- 413 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCC-----CHHHHHH----HHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchhhhHHHhhhccc----cchHHHHhhhhhhhhHH---------------
Confidence 3567899999999999998854 4444 3444556555665432 23444555555544211
Q ss_pred ccccccCCcccchhhHhhhhhhhh-hhcchh---HHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHHhhhhcchh
Q 005005 235 NEDLVLNNSEIHSFSKELDSLKTE-NLSLKN---DIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELESKLSISQE 309 (720)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~e-n~~~k~---~~~~~k~~~~~~~~~~~~~~-~~~~e~~~l~~~~~~~e~~~~~~~~ 309 (720)
.-.+++-|..+|.| |.-+.| ....|-.-++..++..+.++ +.++-.+.|+.+++|+ .++|
T Consensus 414 ----------Atal~kNfsgIrkELsdKleN~NnNlndf~~sfneLKNgKn~dfSKV~qt~s~le~Sikd~----iInq- 478 (569)
T 4dvz_A 414 ----------AIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDL----GINP- 478 (569)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHH----CCCH-
T ss_pred ----------HHHhhhhhHHhHHHHHHHHhhhhccchhhcccchhhccCCCchHHHHhhhccccccChhhh----hhhH-
Confidence 12556666666654 112222 12222233445555544443 2245555667777664 3343
Q ss_pred hhhccccchhhhhhHHHHHHHHHHHHHHHhh-------hhhhHH-------HHhhhhHHHHHHHHHHHHHHhHhhhhhhc
Q 005005 310 DVAKLSTLKVECKDLYEKVENLQGLLAKATK-------QADQAI-------SVLQQNQELRKKVDKLEESLDEANIYKLS 375 (720)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~-------~~~~~~~~l~~~~d~l~~~l~~~~~~~~~ 375 (720)
.|-+||++|-..+..+.+ .++||+ .=|..||+|-+|||.|-..+-||.....-
T Consensus 479 -------------kV~aKIDNLNQaaSefKnGKngDFSkVgQAlsdLKnSkvgLsrnQELtqKIdNLNQAVSEAKatgdF 545 (569)
T 4dvz_A 479 -------------EWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDF 545 (569)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -------------HHHHhHHHHHHHHHHhcCCCccCcchhhhhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 367788888777654333 233433 35678999999999999999999864433
Q ss_pred h
Q 005005 376 S 376 (720)
Q Consensus 376 ~ 376 (720)
+
T Consensus 546 s 546 (569)
T 4dvz_A 546 S 546 (569)
T ss_dssp H
T ss_pred h
Confidence 3
No 56
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=79.84 E-value=2.2 Score=43.68 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecCC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPkY 555 (720)
++|||++++ .||-|++ .-.|.++|+++||+|+++.+..
T Consensus 11 ~~~~Il~~~--------~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~ 50 (424)
T 2iya_A 11 TPRHISFFN--------IPGHGHVNPSLGIVQELVARGHRVSYAITDE 50 (424)
T ss_dssp CCCEEEEEC--------CSCHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred ccceEEEEe--------CCCCcccchHHHHHHHHHHCCCeEEEEeCHH
Confidence 468999984 2455655 4678999999999999998753
No 57
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=79.61 E-value=2.1 Score=45.47 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=36.7
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHH--HHHCCCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKA--LQKKGHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKA--La~lGhEV~VILPkY 555 (720)
..+|||+||+.-+. .||.+.++..|.+. +.+.|++|.|+.+..
T Consensus 203 ~~~~rI~~~~~~~~----~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~ 247 (568)
T 2vsy_A 203 KGPLRVGFVSNGFG----AHPTGLLTVALFEALQRRQPDLQMHLFATSG 247 (568)
T ss_dssp SSCEEEEEEESCSS----SSHHHHHHHHHHHHHHHHCTTEEEEEEESSC
T ss_pred CCCeEEEEECcccc----cChHHHHHHHHHhhccCCcccEEEEEEECCC
Confidence 46799999987654 38899999999999 888999999999753
No 58
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=79.59 E-value=36 Score=38.82 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH-HHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCc
Q 005005 156 QALEDLHKILQEKEALQGEINA-LEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPA 234 (720)
Q Consensus 156 ~a~~~~~~~~~ek~~lq~~~~~-l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (720)
.|-.||+|-|...|-|..|+.. ||.| +...-||..-||.+-. .+++=.|-|+=++++..
T Consensus 614 kaqkdlekslrkrehlekev~kkles~-~~nkn~meakaqansq----kd~ifalin~ea~kear--------------- 673 (876)
T 4dvy_P 614 KAQKDLEKSLRKREHLEKEVEKKLESK-SGNKNKMEAKAQANSQ----KDEIFALINKEANRDAR--------------- 673 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-C---CCSSHHHHHHHH----HHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchhhhhHhhhhccc----cchHHHHhhhhhhhHHH---------------
Confidence 3567899999999999988854 4544 3444555555555432 23334444444443211
Q ss_pred ccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHH-------hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 005005 235 NEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAE-------LNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (720)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~-------~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~ 307 (720)
+-....-|.-+|.| |-+-++-+-.. +++.++-.. |.-|-.+.++++||.-.-
T Consensus 674 ----------~~a~~~nlkGI~~E---lsdKlENiNknLkDf~ksfde~KNGKN------kDFSKv~etlk~L~~SvK-- 732 (876)
T 4dvy_P 674 ----------AIAYTQNLKGIKRE---LSDKLEKISKDLKDFSKSFDEFKNGKN------KDFSKAEETLKALKGSVK-- 732 (876)
T ss_dssp ----------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC----------------CCHHHHHHHHHH--
T ss_pred ----------HHHhccchhhhhHH---HHHHHHHHHHHHHhhcccchhhhCCCc------ccHHHHHHHHHHHHhHHH--
Confidence 11223333333332 22222222222 233333221 222333444444442110
Q ss_pred hhhhhccccchhhhhhHHHHHHHHHHHHHHHhh-------hhhhHHH-------HhhhhHHHHHHHHHHHHHHhHhhhhh
Q 005005 308 QEDVAKLSTLKVECKDLYEKVENLQGLLAKATK-------QADQAIS-------VLQQNQELRKKVDKLEESLDEANIYK 373 (720)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~-------~~~~~~~l~~~~d~l~~~l~~~~~~~ 373 (720)
| -.... .|-+||+||-..+..+.+ .++||+. =|..||+|-+|||-|-..+-+|...+
T Consensus 733 --D----lgINq---Ev~dKIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdLsrNQELtqKVdNLNQAVsEaK~tg 803 (876)
T 4dvy_P 733 --D----LGINP---EWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMG 803 (876)
T ss_dssp --H----STTCH---HHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --H----hccCH---HHHHHHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 0 01222 388999999888866554 3455544 46789999999999999999998754
Q ss_pred hch
Q 005005 374 LSS 376 (720)
Q Consensus 374 ~~~ 376 (720)
.-|
T Consensus 804 dFS 806 (876)
T 4dvy_P 804 DFS 806 (876)
T ss_dssp CTH
T ss_pred chh
Confidence 444
No 59
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=79.21 E-value=1.9 Score=44.79 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCCCceEEEEecccCCccccCCHHHHH--HHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVV--gsLPKALa~lGhEV~VILPk 554 (720)
...+|||++++. |+.|++. -.|.++|+++||+|+++.+.
T Consensus 17 ~~~~mrIl~~~~--------~~~GHv~p~l~la~~L~~~GheV~~~~~~ 57 (441)
T 2yjn_A 17 RGSHMRVVFSSM--------ASKSHLFGLVPLAWAFRAAGHEVRVVASP 57 (441)
T ss_dssp --CCCEEEEECC--------SCHHHHTTTHHHHHHHHHTTCEEEEEECG
T ss_pred cCCccEEEEEcC--------CCcchHhHHHHHHHHHHHCCCeEEEEeCc
Confidence 446799999853 5556554 47889999999999999875
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.47 E-value=5.3 Score=45.01 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=19.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
.||.|++.-.++|.++| .-++..|.+|..+..+-+|
T Consensus 114 ELRRrIqyLKekVdnQl----snIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV----QHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665 2334455555544444333
No 61
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.39 E-value=38 Score=32.61 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHH-hHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 350 QQNQELRKKVDKLEESL-DEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 350 ~~~~~l~~~~d~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
.....+...|+.|-+|| ++||-- ++..+. -...++.|+..|++++...+.-+.+
T Consensus 79 ~~~~~ie~ElEeLTasLFeEAN~M-Va~ar~--~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFDEANNM-VADARK--EKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777666 455521 222222 2334556666666666555444433
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.37 E-value=17 Score=33.12 Aligned_cols=48 Identities=23% Similarity=0.384 Sum_probs=33.0
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+.++..-|+|...|+..|+.|..+|..++ ..++.|+.+|.|+|.+...
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~----------~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVK----------KQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888999888876543 4577889999998887643
No 63
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=72.97 E-value=4.1 Score=41.91 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.3
Q ss_pred ceEEEEecccCCccccCCHHHHHH--HHHHHHHHCCCeEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVA--GLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVg--sLPKALa~lGhEV~VILPkY 555 (720)
|||++++ .|+.|++.- .|.++|+++||+|+++.+..
T Consensus 1 M~Il~~~--------~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~ 38 (415)
T 1iir_A 1 MRVLLAT--------CGSRGDTEPLVALAVRVRDLGADVRMCAPPD 38 (415)
T ss_dssp CEEEEEC--------CSCHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred CeEEEEc--------CCCchhHHHHHHHHHHHHHCCCeEEEEcCHH
Confidence 8999874 256666654 57889999999999998864
No 64
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.29 E-value=21 Score=32.68 Aligned_cols=48 Identities=31% Similarity=0.361 Sum_probs=28.8
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+.++...|+|-..|+..|+.|..+|..+ ...++.|+.+|.|+|.+...
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l----------~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQ----------LSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHH
Confidence 5567778888888888999998887654 34577889999999887643
No 65
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=72.04 E-value=47 Score=30.90 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=51.1
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 005005 341 QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (720)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (720)
.|+.|...|.....++.+++...+-|++..=+++ |-+...+.+|...+-+..-|.+|..+ +.-|..|..
T Consensus 35 ~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~-------yK~eY~~L~KkYk~~~~~Ld~eI~~q----e~iI~nFe~ 103 (119)
T 2avr_X 35 QADAARQALAQNEQVYNELSQRAQRLQAEANTRF-------YKSQYQELASKYEDALKKLEAEMEQQ----KAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------THHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 5788888999999999999998888887544444 33566677788888888888888774 344555554
No 66
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=71.82 E-value=4 Score=39.89 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.++||+|+++..
T Consensus 6 TGatGfIG~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 6 GGGTGFIGTALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 699999999999999999999999974
No 67
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.41 E-value=61 Score=29.57 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=13.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhH
Q 005005 348 VLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~ 368 (720)
...+.++|..++..+++.|++
T Consensus 74 L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777666655
No 68
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=71.15 E-value=52 Score=31.12 Aligned_cols=99 Identities=27% Similarity=0.277 Sum_probs=68.4
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 005005 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 357 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 357 (720)
.+...+...+|....-+...+-||.+-. ++ -++++.|...|..|+..|+.| -..+.+..+
T Consensus 21 ~a~~kLeeaek~adE~eR~~k~lE~r~~------------~d-----eEr~~~lE~qLkeak~~aeea---drKyeE~~R 80 (147)
T 2b9c_A 21 TALQKLEEAEKAADESERGMKVIESRAQ------------KD-----EEKMEIQEIQLKEAKHIAEDA---DRKYEEVAR 80 (147)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHH------------HH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc------------cc-----HHHHHHHHHHHHHHHHHHHHH---HHhHHHHHH
Confidence 3444455555555555556666666543 23 389999999999999999887 345778888
Q ss_pred HHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 358 ~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
|+.-++.-|+.|--- .+....+++.||+.|+.-+..++|
T Consensus 81 Kl~~~E~dLeraeeR----------ae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 81 KLVIIESDLERAEER----------AELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888866421 245567777788877777777666
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=70.39 E-value=14 Score=31.96 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=34.5
Q ss_pred hhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 255 LKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 255 ~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
|...+..|-.....|-.+ .++.+++...|.+.+.-|++.|++|+.++.
T Consensus 40 le~~~~~l~~ek~~L~~q---l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 40 LEEQNVTLLEQKNDLFGS---MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444 788899999999999999999999988874
No 70
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.67 E-value=26 Score=38.89 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=22.9
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHH
Q 005005 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (720)
Q Consensus 253 ~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~ 286 (720)
+.|-.=...++.||+.||..+..+.++.-..+.+
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~ 122 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQY 122 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 3444444558888999998888887766544433
No 71
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.34 E-value=21 Score=38.90 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH
Q 005005 331 LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 331 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~ 368 (720)
||.+|+++ ++++...|++|...|+.
T Consensus 54 Lqg~Ldk~-------------er~~~~rIe~L~~~L~~ 78 (390)
T 1deq_A 54 MKGLIDEV-------------DQDFTSRINKLRDSLFN 78 (390)
T ss_pred HHHHHHHh-------------hhhHHHHHHHHHHHHHH
Confidence 67777763 46777777777776665
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.77 E-value=24 Score=31.01 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh
Q 005005 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA 342 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 342 (720)
|..|+.|-..+. .-=++|..||.+-+.|+..+..+-.+ ..+.+.+ .....++.|+..++.++.
T Consensus 8 Ke~mq~LNdRlA---syIdKVR~LEqqN~~Le~~i~~l~~~------~~~~~~~------~ye~~i~~Lr~~i~~~~~-- 70 (93)
T 3s4r_A 8 KVELQELNDRFA---NLIDKVRFLEQQNKILLAELEQLKGQ------GKSRLGD------LYEEEMRELRRQVDQLTN-- 70 (93)
T ss_dssp CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH------HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc------cCCCcHH------HHHHHHHHHHHHHHHHHH--
Confidence 455666655544 34578999999999999888877653 1222222 245678889998888764
Q ss_pred hhHHHHhhhhHHHHHHHHHHHH
Q 005005 343 DQAISVLQQNQELRKKVDKLEE 364 (720)
Q Consensus 343 ~~~~~~~~~~~~l~~~~d~l~~ 364 (720)
+.|-+.++-+. |+..++.++.
T Consensus 71 ek~~l~~e~dn-l~~~~~~~k~ 91 (93)
T 3s4r_A 71 DKARVEVERDN-LAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHh
Confidence 44444444333 5555555543
No 73
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=68.61 E-value=3.3 Score=29.74 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHhhhhhHHhhHHHHHhhhhc
Q 005005 284 VMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 284 ~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
..|||-|+.|+|.|+.||.||.+
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999865
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.63 E-value=5.3 Score=38.51 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=43.3
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
.|+++..- |-..|++++..|++-..+|.....-.-.|.||+++ -+..++..|+.|...+++.|..++.++.+
T Consensus 22 ~~~~md~~---l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~---~~~~~I~~L~~El~~l~~ki~dLeeel~e-- 93 (152)
T 3a7p_A 22 QTDSMDDL---LIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDD---ALLNTLAILQKELKSKEQEIRRLKEVIAL-- 93 (152)
T ss_dssp --------------------------------------CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cchhHHHH---HHHHHHHhhhHHHHHHHHHHhhccCCCcccccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34454333 66677888888777777665544222234566665 45667777777777777777777766543
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 005005 278 DADERVVMLEMERSSLESSLKELESKLSISQE 309 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~ 309 (720)
-...+..+--|-..|...+.-+|.++...++
T Consensus 94 -K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 94 -KNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666676666666666655444
No 75
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.82 E-value=7.7 Score=35.61 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=45.2
Q ss_pred CcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 005005 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQE 309 (720)
Q Consensus 242 ~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~ 309 (720)
+..+++|-.|++.|+.+|..|+..|..|-..-++ ||+..--.-+||.|||+|+-.|=+
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD----------LER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD----------LERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----------HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4457789999999999999999999888765443 444444577899999999987644
No 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.81 E-value=63 Score=28.49 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhhhhhhH----HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhh
Q 005005 265 DIKVLKAELNSVKDADER----VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATK 340 (720)
Q Consensus 265 ~~~~~k~~~~~~~~~~~~----~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 340 (720)
|++++..+|..++..+.+ +..||+|++.+++.|..+|..... |..+-...|..--.++..+-...+
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~----------L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAER----------LDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444433 457899999999999998876543 222323456665555544433222
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHH
Q 005005 341 QADQAISVLQQNQELRKKVDKLE 363 (720)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~d~l~ 363 (720)
.- -++-.|.+--+.++|+|.
T Consensus 75 E~---~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 75 EL---KSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HH---HHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHhh
Confidence 22 223334444445555553
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.44 E-value=5.6 Score=31.98 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh
Q 005005 159 EDLHKILQEKEALQGEINALEMRLAETDARIR 190 (720)
Q Consensus 159 ~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~ 190 (720)
.|++++..|.++||.+++.|..+++|+.+++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999988764
No 78
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=63.00 E-value=5.6 Score=34.39 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhHhh-hhhhhHhhhHHHHHHHHHHhhhc
Q 005005 166 QEKEALQGEINALEMRLAETDARIRVAA-QEKIHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 166 ~ek~~lq~~~~~l~~~l~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 216 (720)
.|.+.|+++...||.+|+++.++..... +-+..+.-+|.+|..+|.+++..
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999876543 23344555789999999888763
No 79
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.42 E-value=27 Score=29.91 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 005005 354 ELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 416 (720)
Q Consensus 354 ~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (720)
.++.+...||.+|.++..-- .. -...+|.++..+|..++..-.+|..|++=||..+.
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~--~~----~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENF--AV----EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666555543221 11 11345566666777777777777777666665543
No 80
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=62.27 E-value=34 Score=28.85 Aligned_cols=21 Identities=5% Similarity=0.049 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhhhhhhHHHH
Q 005005 265 DIKVLKAELNSVKDADERVVM 285 (720)
Q Consensus 265 ~~~~~k~~~~~~~~~~~~~~~ 285 (720)
+...++.++..+...=+.+..
T Consensus 79 ~~~~i~~~l~~l~~rw~~L~~ 99 (118)
T 3uul_A 79 EEFEIQEQMTLLNARWEALRV 99 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333
No 81
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=61.57 E-value=24 Score=36.29 Aligned_cols=134 Identities=15% Similarity=0.089 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhhhh---------h-hHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhc--hH--HHHHHHHHHHHHHH
Q 005005 326 EKVENLQGLLAKATKQA---------D-QAISVLQQNQELRKKVDKLEESLDEANIYKLS--SE--KMQQYNELMQQKMK 391 (720)
Q Consensus 326 ~~~~~l~~~l~~~~~~~---------~-~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~--~~--~~~~~~~~~~~~~~ 391 (720)
++++.++..|..++... + ..+.+.-. .+...+|+++=.|+.- ..+.+. .. ...+.-..++++++
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~-~~~~~~v~~il~s~~f-~~~~~p~~~~~~~p~~~l~~l~~~i~ 236 (357)
T 3rrk_A 159 EELEAVRKALQEALADRFVLEAEPLENQLAALVVVK-RSELEAARSSLSRLGL-AELRFPGAYGAMPLGKAAARMKERAR 236 (357)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEE-GGGHHHHHHHHHTTTC-CBCCCCGGGGGSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEE-HHHHHHHHHHHHHCCC-eeccCCcccCCCCHHHHHHHHHHHHH
Confidence 45666767777765431 1 12333332 3455677777666642 233332 12 44455577888899
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhhhccCCCCCCCCHHHHHHHHHHhhhhhhcccCChhHHHHHH
Q 005005 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLR 471 (720)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ws~lllrid~~~l~~~i~~~~as~lr 471 (720)
.++..+.....++.+..+-|...+....+.+...+.-.+.... + . -++ ...+++|-+...+...++
T Consensus 237 ~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~------~--~-~~~-----~~~~~~gWvp~~~~~~~~ 302 (357)
T 3rrk_A 237 LAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVAD------M--A-AGK-----YGAALMGWVPQKAKGKVE 302 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--H-TTC-----CSEEEEEEECTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h--c-ccC-----cEEEEEEEeeHHHHHHHH
Confidence 9999999988888888777777777666666555444333111 0 0 001 123445556666777777
Q ss_pred HHHH
Q 005005 472 EMVW 475 (720)
Q Consensus 472 ~~v~ 475 (720)
..+-
T Consensus 303 ~~l~ 306 (357)
T 3rrk_A 303 EALG 306 (357)
T ss_dssp HTCC
T ss_pred HHHH
Confidence 7553
No 82
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=61.36 E-value=7.5 Score=35.48 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=33.7
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~ 307 (720)
+-++..||...+.+-..|+..+..||. .+..|||||..-=++||++|-=...+
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~----------~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKG----------TVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777666654444444444433 34568999999888888888655444
No 83
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=60.28 E-value=32 Score=29.39 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=37.3
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 005005 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 357 (720)
Q Consensus 278 ~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 357 (720)
+...++-.+|.+...|+..|+.||.++..++..-. .+-..+.++...||. -++.=.|||+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~----------~~~~Elk~~~e~Ld~----------KI~eL~elrq 63 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD----------AFRSNLKTLLEILDG----------KIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh----------HHHHHHHHHH
Confidence 34455566666666666666666666666553221 233455555566665 3455567777
Q ss_pred HHHHH
Q 005005 358 KVDKL 362 (720)
Q Consensus 358 ~~d~l 362 (720)
.+-||
T Consensus 64 ~LakL 68 (72)
T 3cve_A 64 NLAKL 68 (72)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 84
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=59.26 E-value=1.6e+02 Score=30.12 Aligned_cols=93 Identities=16% Similarity=0.313 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH---hhhhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE---ANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (720)
+-.+++.|...|.+.+...-.- +-..-++|+.+++-.-+.+.. .++..+ ..++..|+..|+|++..|-.++.-.
T Consensus 152 l~~~~e~L~~ql~~~a~~L~~~--l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l-~~~l~~~~~~~~qq~e~f~~~~~p~ 228 (273)
T 3s84_A 152 LNHQLEGLTFQMKKNAEELKAR--ISASAEELRQRLAPLAEDVRGNLRGNTEGL-QKSLAELGGHLDQQVEEFRRRVEPY 228 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTSSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhHhh
Confidence 4455666665555533322221 223335677777655555543 233344 4467788888999988887777555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 005005 401 DEEIHSYVQLYQESVKEFQDTL 422 (720)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l 422 (720)
.++++.++ ...+++++..|
T Consensus 229 ~e~~~~~l---~~~~e~l~~~l 247 (273)
T 3s84_A 229 GENFNKAL---VQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHh
Confidence 55554433 44555666655
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.33 E-value=4.6 Score=36.49 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=27.5
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhh
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 275 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~ 275 (720)
..+..+.+++++|+.||-.|+..++.|..+|-.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788889999999999999999888888755
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.63 E-value=72 Score=29.11 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 416 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (720)
..+|.++..+|..++..-.+|..+++=|+..+.
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888876543
No 87
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.10 E-value=93 Score=28.27 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 416 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (720)
..+|.++..||..++....+|..|++=|+..+.
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888876543
No 88
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.92 E-value=50 Score=30.88 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 005005 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (720)
Q Consensus 283 ~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l 362 (720)
++.+..+...|++.+.++++.+. . |=.++..+|--++.+++..+. .-.++.+|++++-+|
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~----------~-------lK~el~~~~~k~e~~~~e~~~---l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIY----------D-------LKHELIAAQIKAESSAKEIKE---LKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------H-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------H-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45556666666666666654432 2 333333444444444443333 356778888889899
Q ss_pred HHHHhHh
Q 005005 363 EESLDEA 369 (720)
Q Consensus 363 ~~~l~~~ 369 (720)
|..|++.
T Consensus 130 e~~~~~~ 136 (138)
T 3hnw_A 130 ETELNDS 136 (138)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 8888764
No 89
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=55.81 E-value=15 Score=31.21 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=25.3
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.|+|+++ |+ |.+...+.+.|.+.|++|.++-+.
T Consensus 4 ~m~i~Ii----------G~-G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIA----------GI-GRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEE----------CC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE----------CC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 4777655 43 777788889999999999998763
No 90
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=55.26 E-value=50 Score=37.62 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=40.7
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 261 ~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+=+++|+.+..++...+..|+....+..-|..||+-+-+++.+|..
T Consensus 524 ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~ 569 (675)
T 3d2f_A 524 LDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEE 569 (675)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577999999999999999999998888889999999999998863
No 91
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=55.14 E-value=30 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=18.5
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 314 LSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
+..|+.|.-++-++++.++.-|..+.+++.++
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~ 39 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555566666666666666655555444
No 92
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=55.08 E-value=1.8e+02 Score=31.03 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=50.4
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhhhhhhh-hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH--
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDAD-ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY-- 325 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~-~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-- 325 (720)
....+.||+-...+++-...|..-........ +| -+-.+.+|=.--..|+=-..+|.+++.|-...=
T Consensus 184 ~~k~~~Lk~~~r~i~~~ydrL~rl~~~g~~~~~eF----------~EPkVq~LW~lA~~~NFT~~ELeSlK~EL~HfE~r 253 (323)
T 2p01_A 184 HSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEF----------EEPRVIDLWDLAQSANLTDKELEAFREELKHFEAK 253 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSCSS----------CCTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhHHHHHHHHhcCCCcccCc----------cChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 33455566666667776666664333332211 11 111222221111122222334555555544442
Q ss_pred -HHHHHHHHHHHH--Hhhh--------------hhhHHHHhhhhHHHHHHHHHHHHHHhH
Q 005005 326 -EKVENLQGLLAK--ATKQ--------------ADQAISVLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 326 -~~~~~l~~~l~~--~~~~--------------~~~~~~~~~~~~~l~~~~d~l~~~l~~ 368 (720)
+|+..+++.|+- +..+ .+...+.-+....+-+||.||...|+.
T Consensus 254 L~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le~ 313 (323)
T 2p01_A 254 IEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666652 1111 122334445556666677776666653
No 93
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.74 E-value=34 Score=31.53 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~ 364 (720)
|-..|-.|++-|+-...+.++| +..|..|+..++.|+.
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a---~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQA---ADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4455556666666655555555 4456666666655443
No 94
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=53.84 E-value=71 Score=28.21 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHH
Q 005005 351 QNQELRKKVDKLEE 364 (720)
Q Consensus 351 ~~~~l~~~~d~l~~ 364 (720)
++.-|.++|.-||+
T Consensus 87 ev~~L~RriqllEE 100 (101)
T 3u1c_A 87 EVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc
Confidence 55566667666653
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.81 E-value=29 Score=37.73 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=52.8
Q ss_pred hhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH
Q 005005 255 LKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL 334 (720)
Q Consensus 255 ~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (720)
|-+-|.-+++-|+.||..|..+..+-..+..+-++-.-+ |-.++..++..--.+..+-. +|=.+.+-|+.-
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~------lk~~~~q~~dndn~~~e~s~---eLe~~i~~lk~~ 128 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL------MRGDFAKANNNDNTFKQINE---DLRSRIEILRRK 128 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHHHHhhccchHHHHHHHH---HHHHHHHHHHHH
Confidence 445568899999999999999887777666655543321 11122222211111111111 122333333322
Q ss_pred HHHHhhhhhhHHHHhhhh-HHHHHHHHHHHHHH
Q 005005 335 LAKATKQADQAISVLQQN-QELRKKVDKLEESL 366 (720)
Q Consensus 335 l~~~~~~~~~~~~~~~~~-~~l~~~~d~l~~~l 366 (720)
++ +|+- -+.+|+.+ .+++.|+.+||...
T Consensus 129 V~---~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 129 VI---EQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HH---HHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2554 66677776 66777777777655
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.74 E-value=43 Score=30.18 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=21.9
Q ss_pred HHHHHHHH-HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 005005 326 EKVENLQG-LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 326 ~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~ 370 (720)
..||.|-+ |.+-|-+-|-.| =.....+.+|+++|++-|.+..
T Consensus 54 ~ElEeLTasLFeEAN~MVa~a---r~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 54 KEVEDLTASLFDEANNMVADA---RKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Confidence 34445433 344444444444 1234456677777777766543
No 97
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.43 E-value=34 Score=32.02 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchh
Q 005005 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETD 186 (720)
Q Consensus 133 ~~~~~~~~~~~~~~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~ 186 (720)
.+.|-..|...+|-|--|..=-+.+-..++.+.+|.+.|+.+++.|+.++.+..
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555443
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.03 E-value=51 Score=37.34 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=56.5
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 005005 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (720)
Q Consensus 253 ~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 332 (720)
..|-+-|.-+++-|+.||.++.++..+-..+...- -.+.+.|+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~-------------------------------------k~~~E~Lr 95 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLT-------------------------------------TNIMEILR 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-------------------------------------HHHHHTTS
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHH-------------------------------------HHHHHHHH
Confidence 45566677888888888888887755544322211 12222222
Q ss_pred HHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 005005 333 GLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER 396 (720)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (720)
.-+..+. +-+. .+-+=..+||+++--|++-+..-. ..+ -.||.-.+-++.||+.||--
T Consensus 96 ~rq~q~~-dNdN--tynE~S~ELRRrIqyLKekVdnQl-snI--rvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 96 GDFSSAN-NRDN--TYNRVSEDLRSRIEVLKRKVIEKV-QHI--QLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp SHHHHHH-HHHH--HHHHTTHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-ccch--hHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2222211 2222 133334577777777777665543 332 44677777777788887753
No 99
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=51.69 E-value=1e+02 Score=29.71 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=50.4
Q ss_pred HhhHHHHHhhhhcchhh----hhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh
Q 005005 294 ESSLKELESKLSISQED----VAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (720)
Q Consensus 294 ~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~ 369 (720)
+.||..|++++..-+.= ..-=--|-.|.-+..+..+..-+.+..+-+..+.| =+..+++++|++.++.-|..-
T Consensus 19 ~~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA---~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 19 DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTA---KSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHHHHHHHhcC
Confidence 56788888887654311 11111222333355565555555555554444444 233567788887777666432
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 005005 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (720)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (720)
.--.----++++..+.++-.+-.+.+-++
T Consensus 96 ~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 96 DPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111112455555666655555554444
No 100
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=51.56 E-value=27 Score=30.14 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 005005 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESV 415 (720)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (720)
+.+|.++..+|..++..-.+|..|++=|+..+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666665543
No 101
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=50.98 E-value=20 Score=30.67 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=34.3
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhHhh-hhhhhHhhhHHHHHHHHHHhhh
Q 005005 167 EKEALQGEINALEMRLAETDARIRVAA-QEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 167 ek~~lq~~~~~l~~~l~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
|.+.|.+....||..|+++..+..... +-+..+.-+|.+|.++|.+++.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777778888888877766543 2234445578888888888876
No 102
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=50.22 E-value=17 Score=32.08 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|.|.+-..+.+.|.+.|++|.++-...
T Consensus 14 G~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 14 GYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 568899999999999999999998753
No 103
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.21 E-value=64 Score=28.03 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=41.0
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHH
Q 005005 276 VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQEL 355 (720)
Q Consensus 276 ~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 355 (720)
..+...++-.+|.+.+.|+..|+.||..+..++..-. .+-..+.++...||. -++.=.||
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~----------~~~~Elk~l~e~Ld~----------KI~eL~el 67 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERE----------RARAEVGRAAQLLDV----------SLFELSEL 67 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh----------HHHHHHHH
Confidence 3455667777777777777777777777777664322 233445555555555 45555677
Q ss_pred HHHHHHH
Q 005005 356 RKKVDKL 362 (720)
Q Consensus 356 ~~~~d~l 362 (720)
|..+-||
T Consensus 68 RqgLakL 74 (79)
T 3cvf_A 68 REGLARL 74 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776665
No 104
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=50.08 E-value=46 Score=38.74 Aligned_cols=31 Identities=6% Similarity=0.151 Sum_probs=20.4
Q ss_pred hHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch
Q 005005 367 DEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (720)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (720)
-+-.+.+++-+.+ .-|++|++.+..-+..++
T Consensus 111 ~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~ 141 (706)
T 3fhn_A 111 AEQPPDQFTLDDV----KALHSKLTSVFATVPQIN 141 (706)
T ss_dssp TTSCGGGCCHHHH----HHHHHHHHHHHTTSCCCC
T ss_pred hhcccccccHHHH----HHHHHHHHHHhhhccccc
Confidence 3455667777754 668888888755555554
No 105
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=49.50 E-value=35 Score=36.68 Aligned_cols=35 Identities=37% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
++|+||. |||-|-+-..|.++|.+.|++|+++...
T Consensus 146 k~m~VLV----------TGatG~IG~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 146 SPLTVAI----------TGSRGLVGRALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCCEEEE----------ESTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEE----------ECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3788774 4677777788899999999999999765
No 106
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=48.21 E-value=7.5 Score=42.11 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+.|||+.+ |.|.|-..|.+.|...||+|+||=..
T Consensus 2 ~~M~iiI~-----------G~G~vG~~la~~L~~~~~~v~vId~d 35 (461)
T 4g65_A 2 NAMKIIIL-----------GAGQVGGTLAENLVGENNDITIVDKD 35 (461)
T ss_dssp CCEEEEEE-----------CCSHHHHHHHHHTCSTTEEEEEEESC
T ss_pred CcCEEEEE-----------CCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 57998876 67889999999999999999999654
No 107
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.42 E-value=25 Score=28.50 Aligned_cols=47 Identities=30% Similarity=0.538 Sum_probs=37.2
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK 303 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~ 303 (720)
.|..+...||.||--|+..++ ++...+-+||-|-+.+..-++-|-++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~----------dNS~~lskLE~ets~mKevlk~lq~~ 53 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELE----------DNSNHLTKLETEASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHH----------hhHHHHHHHHhhhhhHHHHHHHHccc
Confidence 567888999999998887654 45566778999999998888877654
No 108
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=45.31 E-value=31 Score=30.57 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 005005 354 ELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVK 416 (720)
Q Consensus 354 ~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (720)
.|+.+...||.+|.+... .+. .-.+.+|.++..+|..++....+|..+++-|+..+.
T Consensus 16 ~Lq~~~~~LE~~l~e~E~-~~~-----~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 16 QGQKESRACLERIQELED-LLA-----KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp --CCCCHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554433 111 122456677778888888888888888888876543
No 109
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=45.23 E-value=21 Score=35.98 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
...+|+|.+| |+|.+-..+.+.|++.||+|.++-+.
T Consensus 18 ~~~m~~I~iI-----------G~G~mG~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 18 GSHMMEVGFL-----------GLGIMGKAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CCCSCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccCCEEEEE-----------CccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566888887 67888899999999999999998664
No 110
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.17 E-value=2.2e+02 Score=27.42 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=72.5
Q ss_pred hhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 005005 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 327 (720)
Q Consensus 248 ~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (720)
|-.+|..+|.+..+.+.-|. ..-...+.+..++.+++..+..+..|-.++...+.--.. ..-+++.+-..
T Consensus 18 LeD~L~~~R~el~~~~~ri~-------~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~---aE~~~~~ie~E 87 (154)
T 2ocy_A 18 LEEQLNKSLKTIASQKAAIE-------NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTK---AEEEADKLNKE 87 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34444445544444433332 222233445555666666666666654444333221111 12234456667
Q ss_pred HHHHHH-HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005005 328 VENLQG-LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (720)
Q Consensus 328 ~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (720)
||.|-+ |.+-|-+-|-.| =.....+++|+++|++-|.++.. ..+.+|.++..|+--++..+.
T Consensus 88 lEeLTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~~~----------~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 88 VEDLTASLFDEANNMVADA---RKEKYAIEILNKRLTEQLREKDT----------LLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhh
Confidence 777764 556666666555 23456788999999999988753 335677777777766655443
No 111
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=45.14 E-value=25 Score=32.13 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 6 IGATGRAGSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EcCCchhHHHHHHHHHhCCCEEEEEEcC
Confidence 3555555677888999999999999765
No 112
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=44.81 E-value=3.3e+02 Score=29.44 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 005005 155 VQALEDLHKILQEKEALQG 173 (720)
Q Consensus 155 ~~a~~~~~~~~~ek~~lq~ 173 (720)
.+.++++.+.++|.-++..
T Consensus 35 ~~~~~el~~f~keRa~iE~ 53 (486)
T 3haj_A 35 HRLCSDLMNCLHERARIEK 53 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567778888877755443
No 113
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.77 E-value=28 Score=27.06 Aligned_cols=40 Identities=43% Similarity=0.500 Sum_probs=23.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
||..+++||.+.-. .|.+..||.|-..|+..|..|-||+.
T Consensus 5 lkselqalkkegfs----peelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 5 LKSELQALKKEGFS----PEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHTTCS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655432 35566666666666666666666553
No 114
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.60 E-value=83 Score=27.26 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=14.9
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 280 DERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
++.+..|++....++..+.+++.+|-
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666555544
No 115
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=44.55 E-value=19 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 528 GGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
| .|.+...+.+.|.+.|++|.++-..
T Consensus 7 G-~G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 7 G-GETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp C-CHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred C-CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5 4999999999999999999999764
No 116
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.35 E-value=2.4e+02 Score=27.60 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=69.5
Q ss_pred hhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 005005 254 SLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (720)
Q Consensus 254 ~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (720)
-+|.=+.-+.-.+..+... +.+.-+++..|+..|..|+..+..|-+.|..=..|-+.-+-+.-| +..++..|+.
T Consensus 31 rlkK~~tEl~k~~~~~E~~---~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e---lq~ri~~L~~ 104 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESL---NRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD---LQARITSLQE 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3444444444333333333 334456788888888888888888888887777777766666554 7778888888
Q ss_pred HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 005005 334 LLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (720)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~ 364 (720)
=|+.....-.+ +...|+.|+++|-.||.
T Consensus 105 El~~~k~~~~k---~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 105 EVKHLKHNLEK---VEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 88775544333 57789999999988875
No 117
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=43.94 E-value=93 Score=34.11 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH-HHHHHHHHHH
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQE-LRKKVDKLEE 364 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-l~~~~d~l~~ 364 (720)
-.+.|..|+..+.++.++...-+.+..|.-. ...++.++|.
T Consensus 57 ~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~ 98 (411)
T 3ghg_C 57 VKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEA 98 (411)
T ss_dssp HHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665554444444332 3344444433
No 118
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=43.92 E-value=17 Score=38.14 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCCcEEEECchhhhhHHHHHHHhhCc-CCCCCCCEEEEecCC
Q 005005 639 KQPDIIHCHDWQTAFVAPLYWDLYVP-KGLNSARVCFTCHNF 679 (720)
Q Consensus 639 ~kPDIIHcHDWHTALVaPLyLk~y~~-~gf~~iptVFTIHNL 679 (720)
..|||||+|.|.+++++..+.+.... .+..+.|.++.+|+.
T Consensus 131 ~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 172 (413)
T 2x0d_A 131 AKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDF 172 (413)
T ss_dssp CTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSC
T ss_pred CCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeec
Confidence 36999999999998874433211000 012346777777765
No 119
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=43.73 E-value=28 Score=32.34 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.8
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHH-HCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQ-KKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa-~lGhEV~VILPk 554 (720)
++||.+.| |||-|-+-..+.++|. +.|++|.++...
T Consensus 3 ~mmk~vlV---------tGasg~iG~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 3 AMYXYITI---------LGAAGQIAQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp CSCSEEEE---------ESTTSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred ceEEEEEE---------EeCCcHHHHHHHHHHHhcCCceEEEEecC
Confidence 45775444 3555555577888999 899999998764
No 120
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.68 E-value=55 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=15.3
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 280 DERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
+..+..|+++.+.|+.+|+|+|.++.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~ 36 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLA 36 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888887664
No 121
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.06 E-value=87 Score=27.03 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=13.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhH
Q 005005 348 VLQQNQELRKKVDKLEESLDE 368 (720)
Q Consensus 348 ~~~~~~~l~~~~d~l~~~l~~ 368 (720)
...+.++|..++..|++-|++
T Consensus 68 L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 68 LLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 445666777777777766653
No 122
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=42.82 E-value=30 Score=30.90 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
..++++|+++ | .|.+-..+.+.|.+.|++|+++-+.
T Consensus 16 ~~~~~~v~Ii----------G-~G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 16 KQKSKYIVIF----------G-CGRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp -CCCCEEEEE----------C-CSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ccCCCcEEEE----------C-CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 3456777765 3 3777778888999999999999765
No 123
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.74 E-value=92 Score=30.04 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 353 ~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
..|+.+++.|++.|++-+- ..+.++....-||-....+|+++++.-+|=..
T Consensus 78 ~~l~~ki~dLeeel~eK~K---~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNK---NTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655554321 12334444445555566666666655555443
No 124
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=42.09 E-value=2.4e+02 Score=27.05 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~ 369 (720)
+-+++..|...|.-|-.+|+.|-..+ +.|++.||.||..|..+
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv---~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSV---TKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44677778888888888888875544 45777788887777644
No 125
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=42.08 E-value=23 Score=34.50 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=25.1
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
+|||.+| |+|-+-+.+...|++.||+|+++-+
T Consensus 3 ~m~i~ii-----------G~G~~G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIA-----------GAGAMGSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEE-----------CcCHHHHHHHHHHHhCCCcEEEEEC
Confidence 5788876 4566777888899999999998865
No 126
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=41.88 E-value=29 Score=31.88 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..+.++|.+.|++|+++...
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 6 LGATGRAGSAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 4666666678888999999999999764
No 127
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.40 E-value=22 Score=26.93 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhh
Q 005005 160 DLHKILQEKEALQGEINALEMRLAETDA 187 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~~~ 187 (720)
.++.++.+|..|+.+++.|+.-|.+++|
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~~~e~ 36 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENAECEA 36 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccccC
Confidence 5788999999999999999988887754
No 128
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=41.17 E-value=29 Score=33.54 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEe
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VIL 552 (720)
+++|+|+.|++ --||.| .++..|+.+|++.|..|-+|=
T Consensus 3 ~~~~~vI~v~s------~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 3 RAKVRRIALAN------QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp --CCCEEEECC------SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEEe------CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35688888875 258888 689999999999999999983
No 129
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.96 E-value=33 Score=31.71 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..+.++|.+.|++|+++...
T Consensus 10 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 10 IGASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp ETCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 5788888888999999999999999765
No 130
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=40.89 E-value=2.3e+02 Score=26.96 Aligned_cols=88 Identities=14% Similarity=0.256 Sum_probs=56.8
Q ss_pred HHHHH-HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH-HHHHHHhHhhhhhh------chHHHHHHHHHHHHHHHHHHHH
Q 005005 325 YEKVE-NLQGLLAKATKQADQAISVLQQNQELRKKVD-KLEESLDEANIYKL------SSEKMQQYNELMQQKMKLLEER 396 (720)
Q Consensus 325 ~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d-~l~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 396 (720)
|+.|. .+-.-++.++..|+.|+.-|++. +|-+.++ +|..++++.+-|.- .+. -+.+.+.+.+.+..|-++
T Consensus 26 le~v~~~~w~Y~~q~~~~a~~~v~ql~~s-el~qel~~~l~~~ld~l~~~~~~l~~~L~P~-t~el~~~l~~~~e~Lr~~ 103 (165)
T 1gs9_A 26 WELALGRFWDYLRWVQTLSEQVQEELLSS-QVTQELRALMDETMKELKAYKSELEEQLTPV-AEETRARLSKELQAAQAR 103 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHH
Confidence 55443 45566777777778887666654 3433333 48888887776621 111 023466777788888888
Q ss_pred HhhchhhHHHHHHHHHHH
Q 005005 397 LQRSDEEIHSYVQLYQES 414 (720)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (720)
++..-+++...++-|.+.
T Consensus 104 L~~d~EelR~~l~p~~~e 121 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGE 121 (165)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888777543
No 131
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.60 E-value=2.3e+02 Score=31.50 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHH
Q 005005 352 NQELRKKVDKLEES 365 (720)
Q Consensus 352 ~~~l~~~~d~l~~~ 365 (720)
.++|.++|+.|+.+
T Consensus 102 LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 102 LRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 45666666666543
No 132
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.18 E-value=1e+02 Score=26.34 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=15.6
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 280 DERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
++.+..|++....++..+.+++.+|-
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666665543
No 133
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=39.95 E-value=38 Score=27.80 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHHHCC-CeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKG-HLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lG-hEV~VILPk 554 (720)
+|+ |-+-..+.+.|.+.| ++|.++-+.
T Consensus 11 ~G~-G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 11 VGA-GKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp ECC-SHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred ECC-CHHHHHHHHHHHhCCCceEEEEeCC
Confidence 366 777788889999999 898887653
No 134
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.78 E-value=1e+02 Score=27.96 Aligned_cols=34 Identities=12% Similarity=0.365 Sum_probs=22.9
Q ss_pred ccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 244 ~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
+|..|-..++.+..||..|.-+|..++..+.+++
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777766665544
No 135
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=39.18 E-value=60 Score=35.97 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCCcEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 620 FRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 620 aeRFafFSRAALElL~klg--~kPDIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
.+-|.-.++..++.+...- ..-|+|-+||.|-.++ |.+++.. ..+.++.|-+|-.
T Consensus 127 w~~Y~~vN~~fA~~i~~~~~~~~~D~VwVhDYhL~ll-p~~lR~~----~~~~~igfFlHiP 183 (496)
T 3t5t_A 127 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGV-PALLREQ----RPDAPILLFVHIP 183 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSSCEEEEESGGGTTH-HHHHHHH----CTTSCEEEECCSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCEEEEeCccHhHH-HHHHHhh----CCCCeEEEEEcCC
Confidence 3455556666666554432 2458999999999998 5665432 2468999999976
No 136
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=38.92 E-value=23 Score=35.92 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=27.9
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
...+|+|.+| |+|.+-..+.+.|++.||+|.++-+.
T Consensus 28 ~~~~~~I~iI-----------G~G~mG~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 28 DPYARKITFL-----------GTGSMGLPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp -CCCSEEEEE-----------CCTTTHHHHHHHHHHTTCEEEEECSC
T ss_pred ccCCCEEEEE-----------CccHHHHHHHHHHHhCCCeEEEEcCC
Confidence 4467899888 55666688888999999999988654
No 137
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=38.88 E-value=32 Score=31.94 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||.|.+-..+.+.|.+.|++|.++.+.
T Consensus 6 iGa~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 6 LGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp ETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4668888889999999999999988654
No 138
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=38.79 E-value=3.3e+02 Score=27.77 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 005005 156 QALEDLHKILQEKEALQG 173 (720)
Q Consensus 156 ~a~~~~~~~~~ek~~lq~ 173 (720)
..++++...++|.-++..
T Consensus 43 ~~~~el~~f~keRa~IE~ 60 (350)
T 3aco_A 43 RLCSDLMNCLHERARIEK 60 (350)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888765543
No 139
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=38.65 E-value=35 Score=33.41 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 19 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 19 LGATGLLGHHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp ESTTSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence 4666666778888999999999998754
No 140
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=38.63 E-value=26 Score=32.69 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..+.++|.+.|++|.++...
T Consensus 7 tGasg~iG~~l~~~L~~~g~~V~~~~r~ 34 (255)
T 2dkn_A 7 TGSASGIGAALKELLARAGHTVIGIDRG 34 (255)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eCCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4666666677889999999999988654
No 141
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.53 E-value=1.7e+02 Score=32.84 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHhHh
Q 005005 349 LQQNQELRKKVDKLEESLDEA 369 (720)
Q Consensus 349 ~~~~~~l~~~~d~l~~~l~~~ 369 (720)
+.|++++.+.|++|..+|.+-
T Consensus 57 ~kqerdv~~rI~kLkn~L~~~ 77 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLADS 77 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 346777777777777777654
No 142
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=38.24 E-value=33 Score=33.60 Aligned_cols=39 Identities=26% Similarity=0.127 Sum_probs=25.8
Q ss_pred CCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 506 ~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
..+.++|+||.. ||-|-+-..|.++|.+.|++|+++...
T Consensus 9 ~~~~~~~~vlVT----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 9 HHGSMTRSALVT----------GITGQDGAYLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp ------CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccccCCeEEEE----------CCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 345677887643 666666677888999999999998654
No 143
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=38.00 E-value=1.2e+02 Score=31.96 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=53.8
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh----hhhHHHHHHHHHHH
Q 005005 288 MERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVL----QQNQELRKKVDKLE 363 (720)
Q Consensus 288 ~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~~l~~~~d~l~ 363 (720)
+++..+...+++|..++..++. +..-+..++..+..-+...+.|+..| .+=+.+-.+++.|.
T Consensus 226 k~~~~~~~ei~~l~~~i~~~~~--------------l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~ 291 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTVDYKVT--------------LNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVL 291 (346)
T ss_dssp GGHHHHHHHHHHHHSCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666533332 22223333333444444445555444 35567778877777
Q ss_pred HHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 005005 364 ESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKE 417 (720)
Q Consensus 364 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (720)
..+..|. -+.+.+++.- ++..++...+ +=.++..++.-|.+.|++
T Consensus 292 ~~I~~~~-~~i~~~~~~~----i~~~L~~a~~----~W~~l~~~a~~l~~~~~~ 336 (346)
T 2nrj_A 292 GHIENAA-QKADQNKFKF----LKPNLNAAKD----SWKTLRTDAVTLKEGIKE 336 (346)
T ss_dssp HHHHHHT-TCCSTTTTGG----GHHHHHHHHH----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhh-ccCCHHHHHH----HHHHHHHHHh----HHHHHHHHHHHHHHhhhh
Confidence 7777752 2333443321 1212222222 233566666666665554
No 144
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=37.73 E-value=3e+02 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 005005 155 VQALEDLHKILQEKEALQGE 174 (720)
Q Consensus 155 ~~a~~~~~~~~~ek~~lq~~ 174 (720)
...++++.+.+.|+-++..+
T Consensus 27 ~~~~~el~~f~~eRa~iE~e 46 (305)
T 2efl_A 27 IDILEKYIKFVKERTEIELS 46 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44677888888877655443
No 145
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=37.40 E-value=25 Score=34.74 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=25.5
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+.++|+||. |||-|-+-..|.++|.+.|++|+++...
T Consensus 16 ~~~~~~vlV----------tGatG~iG~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 16 PRGSHMILV----------TGSAGRVGRAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp -----CEEE----------ETTTSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCCEEEE----------ECCCChHHHHHHHHHHhCCCEEEEEeCC
Confidence 345677764 4777777778889999999999998654
No 146
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.38 E-value=4.9e+02 Score=29.53 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=12.8
Q ss_pred HhhhHHHHHHHHHHhhh
Q 005005 199 VELLEDQLQKLQHELTH 215 (720)
Q Consensus 199 ~~~~~~~~~~~~~~~~~ 215 (720)
++..|.++|+.|.||.+
T Consensus 316 ~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 316 VEAAERNYERARAELNQ 332 (551)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667778888888876
No 147
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=37.26 E-value=27 Score=34.00 Aligned_cols=28 Identities=21% Similarity=-0.003 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 18 TGatG~iG~~l~~~L~~~G~~V~~~~r~ 45 (321)
T 2pk3_A 18 TGVAGFVGKYLANHLTEQNVEVFGTSRN 45 (321)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 4677777788889999999999998643
No 148
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=36.82 E-value=34 Score=34.28 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||+|-+-+++.+.|++.|++|.++-+.
T Consensus 27 IGg~G~mG~~la~~l~~~G~~V~~~~~~ 54 (298)
T 2pv7_A 27 VGGYGKLGGLFARYLRASGYPISILDRE 54 (298)
T ss_dssp ETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred EcCCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4789999999999999999999998654
No 149
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=36.74 E-value=3.1e+02 Score=26.84 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=37.1
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHh-hh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAEL-NS-VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK 313 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~-~~-~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~ 313 (720)
++..-+..+..|...+=+.-..+-..| .. +.....+....++.|...+.....++..+..+-.++.|
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~K 134 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLEN 134 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555555555 22 23444555555666666666666666655554444433
No 150
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=36.62 E-value=2.6e+02 Score=25.88 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=46.5
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 005005 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (720)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (720)
+.+-...|+.|...|..+..++.+|+.-.+-++...=+++ |-+.+.+.++.++.-+..-|.+|..+
T Consensus 29 y~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~-------yk~~y~~l~k~Y~~~~keLd~~ik~q 94 (119)
T 3etw_A 29 FNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRF-------YKSQYQELASKYEDALKKLEAEMEQQ 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456788888999999999988765555544332222 55688888888888888888888874
No 151
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=36.27 E-value=33 Score=34.02 Aligned_cols=37 Identities=19% Similarity=0.030 Sum_probs=29.5
Q ss_pred CceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPkY 555 (720)
++||++.. |||.|-+ +-.|-+.|.+.|++|+||+-.-
T Consensus 5 ~k~Illgi--------TGsiaayk~~~~ll~~L~~~g~eV~vv~T~~ 43 (207)
T 3mcu_A 5 GKRIGFGF--------TGSHCTYEEVMPHLEKLIAEGAEVRPVVSYT 43 (207)
T ss_dssp TCEEEEEE--------CSCGGGGTTSHHHHHHHHHTTCEEEEEECC-
T ss_pred CCEEEEEE--------EChHHHHHHHHHHHHHHHhCCCEEEEEEehH
Confidence 45777543 7888888 7899999999999999998654
No 152
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=36.17 E-value=23 Score=34.80 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=25.2
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHC-----C-CeEEEEec
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-----G-HLVEIVLP 553 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-----G-hEV~VILP 553 (720)
+..+|||.+| |+|-+-+.+...|++. | |+|+++.+
T Consensus 5 ~~~~m~I~ii-----------G~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 5 NQQPIKIAVF-----------GLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp --CCEEEEEE-----------CCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCEEEEE-----------CcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 3455899887 4555556777888888 9 99998865
No 153
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=35.84 E-value=38 Score=33.53 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=27.4
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHH--HHHHHC--CCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLG--KALQKK--GHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLP--KALa~l--GhEV~VILPk 554 (720)
||||+| +.+++||++..+| ++|++. |.++.++...
T Consensus 1 mkILii--------~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~ 39 (348)
T 1psw_A 1 MKILVI--------GPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPA 39 (348)
T ss_dssp CEEEEE--------CCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECG
T ss_pred CeEEEE--------eccccCHHHHHHHHHHHHHHHCCCCEEEEEECc
Confidence 788876 3579999966655 788876 8999998764
No 154
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=35.77 E-value=39 Score=32.74 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=29.8
Q ss_pred CceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEec
Q 005005 511 GLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VILP 553 (720)
+++|+.|++- -||.| .++..|+.+|++.|..|-+|=.
T Consensus 17 ~~~vI~v~s~------kGGvGKTT~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 17 IKSRIAVMSG------KGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp CSCEEEEECS------SSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4778877652 47877 6899999999999999998853
No 155
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=35.61 E-value=34 Score=32.94 Aligned_cols=26 Identities=35% Similarity=0.235 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|+|-+-+.+...|++.||+|+++.+.
T Consensus 7 G~G~~G~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 7 GCGALGQLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcCHHHHHHHHHHHhCCCCEEEEEcC
Confidence 45777788889999999999998654
No 156
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=35.01 E-value=2e+02 Score=23.96 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=22.6
Q ss_pred hHHhhHHHHHhhhhcch---hhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh
Q 005005 292 SLESSLKELESKLSISQ---EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA 342 (720)
Q Consensus 292 ~l~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 342 (720)
.|.+=|.+.|.++.... .|+..+..+..+.+.+-..+..-+..++.....+
T Consensus 13 el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g 66 (119)
T 3uun_A 13 EVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLG 66 (119)
T ss_dssp HHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555556666654321 2333333333344444444444444444433333
No 157
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=34.90 E-value=2.2e+02 Score=27.91 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=43.4
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHH
Q 005005 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLA 336 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 336 (720)
+++|+.+..+....+..|+....+..-+..||+-+-+++.+|... -.++++= |-..+.++++.++..|+
T Consensus 118 ~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~---~~~~~~~--~k~~i~~~l~~~~~wl~ 186 (227)
T 1u00_A 118 DSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD---AALLSAA--ERQVIDDAAAHLSEVAQ 186 (227)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---GGGSCHH--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCHH--HHHHHHHHHHHHHHHHh
Confidence 356666777777777777777777777888888888888888542 2233322 22245555555555554
No 158
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=34.11 E-value=35 Score=33.56 Aligned_cols=38 Identities=21% Similarity=0.078 Sum_probs=30.8
Q ss_pred CCceEEEEecccCCccccCCHHHH--HHHHHHHHHHCCCeEEEEecCC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~lGhEV~VILPkY 555 (720)
.++||++. -|||.|-+ +-.|-+.|.+.|++|+||+-.-
T Consensus 6 ~~k~I~lg--------iTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~ 45 (201)
T 3lqk_A 6 AGKHVGFG--------LTGSHCTYHEVLPQMERLVELGAKVTPFVTHT 45 (201)
T ss_dssp TTCEEEEE--------CCSCGGGGGGTHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEE--------EEChHHHHHHHHHHHHHHhhCCCEEEEEEChh
Confidence 34677654 37999988 8999999999999999998654
No 159
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=33.92 E-value=4e+02 Score=27.22 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 005005 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESV 415 (720)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (720)
-....|++.+..|-+++...-+++...+.-|.+.+
T Consensus 158 ~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~l 192 (273)
T 3s84_A 158 GLTFQMKKNAEELKARISASAEELRQRLAPLAEDV 192 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666665544
No 160
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=33.78 E-value=57 Score=33.88 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHC-CCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-GhEV~VILPk 554 (720)
.+|||++|+.+-+-+.| ...|-++|++. |+++.++..+
T Consensus 24 ~m~ki~~v~Gtr~~~~~-------~a~li~~l~~~~~~~~~~~~tG 62 (396)
T 3dzc_A 24 AMKKVLIVFGTRPEAIK-------MAPLVQQLCQDNRFVAKVCVTG 62 (396)
T ss_dssp CCEEEEEEECSHHHHHH-------HHHHHHHHHHCTTEEEEEEECC
T ss_pred CCCeEEEEEeccHhHHH-------HHHHHHHHHhCCCCcEEEEEec
Confidence 45799999988554432 25566777776 7888877664
No 161
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=33.55 E-value=48 Score=31.00 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=25.3
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|+|+.. ||-|-+-..+.++|.+.|++|+++...
T Consensus 20 ~~~~ilVt----------GatG~iG~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 20 QGMRVLVV----------GANGKVARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp -CCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCeEEEE----------CCCChHHHHHHHHHHhCCCeEEEEECC
Confidence 55777654 455555567778999999999999765
No 162
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=33.53 E-value=1.8e+02 Score=28.53 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 263 k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+++|+.+..+....++.|+....+..-|..|++-+-.+|+.+..
T Consensus 121 ~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~ 164 (219)
T 4e81_A 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE 164 (219)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777788878777777753
No 163
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.46 E-value=2e+02 Score=27.19 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhHh
Q 005005 354 ELRKKVDKLEESLDEA 369 (720)
Q Consensus 354 ~l~~~~d~l~~~l~~~ 369 (720)
.+.+|+++|++.|.++
T Consensus 100 ~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 100 AIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554444
No 164
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=33.46 E-value=38 Score=30.73 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.1
Q ss_pred ceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEec
Q 005005 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VILP 553 (720)
|||+.|++- .||.| .++..|+.+|++.|..|.+|=.
T Consensus 1 M~vi~v~s~------kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 1 MKVISFLNP------KGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp CEEEEECCS------STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeC------CCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 788888752 47766 6888999999999999998853
No 165
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=33.41 E-value=53 Score=28.90 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.4
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
||||+.+-. ..+|.-..++..+.+.|.+.|++|.++-.
T Consensus 1 M~ki~I~y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 38 (148)
T 3f6r_A 1 MSKVLIVFG-----SSTGNTESIAQKLEELIAAGGHEVTLLNA 38 (148)
T ss_dssp -CEEEEEEE-----CSSSHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred CCeEEEEEE-----CCCchHHHHHHHHHHHHHhCCCeEEEEeh
Confidence 356655432 35898999999999999999999998744
No 166
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=33.31 E-value=1.2e+02 Score=30.58 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=57.8
Q ss_pred hhhHhhhhhhhhhh-cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 005005 247 SFSKELDSLKTENL-SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (720)
Q Consensus 247 ~~~~~~~~~~~en~-~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 325 (720)
....+++..|..++ .+|+.|++-|++- .+.+..+-++..-||-..|+.....+|.+...+++=-..| |.|
T Consensus 88 ~i~~~ln~~r~~~i~~lk~~Ie~~k~~q-~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rL--------Dy~ 158 (214)
T 2cly_A 88 QKIAQLEEVKQASIKQIQDAIDMEKSQQ-ALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRL--------DYH 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 44556666776554 5778888877665 5888889999999999999999999998888887755554 456
Q ss_pred HHHHHHH
Q 005005 326 EKVENLQ 332 (720)
Q Consensus 326 ~~~~~l~ 332 (720)
=.+|+.+
T Consensus 159 v~~e~~~ 165 (214)
T 2cly_A 159 ISVQNMM 165 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 167
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.98 E-value=1.8e+02 Score=27.06 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHH
Q 005005 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (720)
Q Consensus 300 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~ 379 (720)
||.+|..||+....-..--.-|. .-|.+|.+-|++-+.|. ..+-++|+.++..|...|.+|... -+.+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCN---qTV~tL~~SL~~ekaq~------q~~vqeLqgEI~~Lnq~Lq~a~ae---~erl 97 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATAN---HTVMALMASLDAEKAQG------QKKVEELEGEITTLNHKLQDASAE---VERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_pred HHHHHHHHHHH
Q 005005 380 QQYNELMQQKM 390 (720)
Q Consensus 380 ~~~~~~~~~~~ 390 (720)
+.-|+-++.++
T Consensus 98 r~~~~~~~~r~ 108 (121)
T 3mq7_A 98 RRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhchhhhhHh
No 168
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.79 E-value=3.8e+02 Score=26.61 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=49.9
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 341 (720)
+..+++.++.+|.-+.+- =|..+...+.+|-.+|.---+++- . .+-+.|+.|+..|.- .
T Consensus 108 ~~~~~eelr~~L~P~~ee---------l~~~~~~~~eel~~~L~p~~eelr------~---kl~~~veelk~~l~P---~ 166 (243)
T 2a01_A 108 WQEEMELYRQKVEPLRAE---------LQEGARQKLHELQEKLSPLGEEMR------D---RARAHVDALRTHLAP---Y 166 (243)
T ss_dssp HHHHHHHHHTTHHHHHHH---------HHHHHHHHHHHHCCSCCSSTHHHH------H---HHHHHHHHHHHHHHH---H
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHhhHHHHHHHHHhHHHHHH------H---HHHHHHHHHHHHHHh---h
Confidence 445566777666554321 133344555555554443333221 0 234566666666655 2
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 005005 342 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (720)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (720)
++..- ..+...|+.|+++|.-- -.---++|.+..+-|++++...=+.|+
T Consensus 167 ~ee~r------~kl~~~~~el~~~l~p~--~~e~~~kl~~~~e~lr~~l~p~~e~lk 215 (243)
T 2a01_A 167 SDELR------QRLAARLEALKENGGAR--LAEYHAKATEHLSTLSEKAKPALEDLR 215 (243)
T ss_dssp HHHHH------HHHHHHHHHHHHHHHHT--TTSSSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHH------HHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22221 11234555566554320 011112455556666666665544443
No 169
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=32.69 E-value=39 Score=31.25 Aligned_cols=29 Identities=28% Similarity=0.190 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|||-|-+-..+.++|.+.|++|+++...-
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 6 VGSTGRVGKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp ESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 46666666788899999999999997653
No 170
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=32.55 E-value=34 Score=32.78 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
||+ |-+-..|.++|.+.|++|+++...-
T Consensus 11 tGa-G~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 11 FGH-GYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp ETC-CHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred ECC-cHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 477 8888889999999999999997653
No 171
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=32.48 E-value=34 Score=32.32 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCC-CeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG-HLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lG-hEV~VILPk 554 (720)
.+|+.++|+ ||-|-+-..+.++|.+.| +.|+++...
T Consensus 21 ~~mk~vlVt---------GatG~iG~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 21 GHMKNVLIL---------GAGGQIARHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp -CCEEEEEE---------TTTSHHHHHHHHHHTTCTTEEEEEEESS
T ss_pred CcccEEEEE---------eCCcHHHHHHHHHHHhCCCceEEEEEcC
Confidence 446666663 566666678889999999 899988754
No 172
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=32.38 E-value=25 Score=36.87 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=25.9
Q ss_pred hhhHhhhhhhhhhhc-chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHH
Q 005005 247 SFSKELDSLKTENLS-LKNDIKVLKAELNSVKDADERVVMLEMERSSLE 294 (720)
Q Consensus 247 ~~~~~~~~~~~en~~-~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~ 294 (720)
.++++++.++++++. |..-+..++.+|.-++ ++..-.|.++-..|.
T Consensus 63 ~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~--~e~~~~l~~~~~~Lr 109 (307)
T 2l7b_A 63 QVTQELRALMDETMKELKAYKSELEEQLTPVA--EETRARLSKELQAAQ 109 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC--SSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHhHHHHH
Confidence 678999999888762 2222234666665543 344444444444433
No 173
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=32.17 E-value=41 Score=33.88 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 34 tGatG~IG~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 34 TGITGQDGSYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EcCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 4666767788889999999999998643
No 174
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=32.16 E-value=27 Score=31.06 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|+ |.+...+.+.|.+.|++|+++-+.
T Consensus 9 ~G~-G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 9 CGH-SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp ECC-SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ECC-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 354 899999999999999999999874
No 175
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.13 E-value=43 Score=36.02 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=51.1
Q ss_pred cccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 243 ~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+.++.+..++..|+++...|..+|+.++.++.+. .+.+..-|.+|..|-..+.||...+.+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKEL---NEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 4577889999999999999999999999887655 577889999999999999999766543
No 176
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=31.68 E-value=42 Score=33.78 Aligned_cols=26 Identities=35% Similarity=0.204 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
|||-|-+-..|.++|.+.|++|+++.
T Consensus 17 TG~tGfIG~~l~~~L~~~G~~V~~~~ 42 (404)
T 1i24_A 17 IGGDGYCGWATALHLSKKNYEVCIVD 42 (404)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred eCCCcHHHHHHHHHHHhCCCeEEEEE
Confidence 58888888999999999999999983
No 177
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=31.49 E-value=14 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
.+.|||.+| |+|-+-++|.++|.+.||+|.++..
T Consensus 4 ~~~mkI~II-----------G~G~~G~sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 4 APRLRVGIF-----------DDGSSTVNMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCCEEEEE-----------CCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred CCCcEEEEE-----------eeCHHHHHHHHHHHHCCCEEEEecC
Confidence 356898887 4566668899999999999988654
No 178
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=31.43 E-value=47 Score=32.15 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=28.5
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||++++.-..+. .+. .+.+..+.+++.++|++|.++-|.
T Consensus 2 m~i~il~~~~~~~-~~~--~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIK--KDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGC-CTT--TCHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhC-CcC--CChHHHHHHHHHHCCCEEEEEchh
Confidence 6999987543221 111 245567999999999999999874
No 179
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=31.41 E-value=76 Score=34.44 Aligned_cols=110 Identities=10% Similarity=0.239 Sum_probs=66.5
Q ss_pred hcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH------------HH-HHHHhHhhh
Q 005005 305 SISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD------------KL-EESLDEANI 371 (720)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d------------~l-~~~l~~~~~ 371 (720)
.+.....-+|+|++.=|.+++.|.+.|..++.....-..--+ ..|+..+. +. ++-|.+..+
T Consensus 297 ~V~~~~~~~lsPiE~Aie~i~~k~~eL~~~i~~~~~~~~~~~------~~Lq~~LqG~V~~~VngG~~~y~~~Fl~~~~~ 370 (436)
T 2yin_A 297 EVVHMSQTTISPLENAIETMSTANEKILMMINQYQSDETLPI------NPLSMLLNGIVDPAVMGGFAKYEKAFFTEEYV 370 (436)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCS------HHHHHHHHHHHCCSSSCCTHHHHHHHCSHHHH
T ss_pred eEeeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch------hHHHHHhcccccccccccHHHHHHHhcCchhh
Confidence 344455678999999999999999999988876422111011 12333221 11 233333333
Q ss_pred hhhch--HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHH
Q 005005 372 YKLSS--EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQD 420 (720)
Q Consensus 372 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 420 (720)
.+... ++++++.+++++.+..+++-|..-..=|....+-|++. ..-|+.
T Consensus 371 ~~~p~~~~~v~~Lk~~~~~~~~~l~~~L~lh~~li~~~~~~~h~~L~~~f~~ 422 (436)
T 2yin_A 371 RDHPEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSDNLRPFHDRMEECFKN 422 (436)
T ss_dssp HHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred hhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33333 56888999999999999998876666555544334433 334444
No 180
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.22 E-value=25 Score=28.60 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.8
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
+-.|..+.+.|..+|..|+..|..|+.++...+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999988888776554
No 181
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=31.19 E-value=44 Score=32.26 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 13 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 13 TGGAGFIGGHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp ETTTSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 4777777788889999999999999654
No 182
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.13 E-value=3.6e+02 Score=25.78 Aligned_cols=94 Identities=28% Similarity=0.392 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHhhhhhhhhhHH-HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 005005 261 SLKNDIKVLKAELNSVKDADERV-VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 339 (720)
Q Consensus 261 ~~k~~~~~~k~~~~~~~~~~~~~-~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 339 (720)
-|++|.+++..++.+.++.-+-+ -||+.|+- .+..|-++-..-|..+ +.|..|.-.+..+.+.-+.+|.+-
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqg----KVDQlqKRn~~HQKEi---~~Lrae~~~~QRn~~K~~~~Lkrn- 86 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVGNMLREEQG----KVDQLQKRNVAHQKEI---GKLRAELGTAQRNLEKADQLLKRN- 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHhccHHHHHH---HHHHHHHHHHHHhHHHHHHHHHhh-
Confidence 47788888888888776655444 46666664 3445666666666544 444555444555555555555442
Q ss_pred hhhhhHHHHhhhhHHH--HHHHHHHHHHHhHhh
Q 005005 340 KQADQAISVLQQNQEL--RKKVDKLEESLDEAN 370 (720)
Q Consensus 340 ~~~~~~~~~~~~~~~l--~~~~d~l~~~l~~~~ 370 (720)
.+||||.- -+|+-.||+-|+|-.
T Consensus 87 --------~~qQnQQSlDiRKLrELEADLKEKD 111 (167)
T 4gkw_A 87 --------SQQQNQQSLDMRKLGELEADLKEKD 111 (167)
T ss_dssp --------HHHHHHHHHHHHHTHHHHHTHHHHH
T ss_pred --------hHHHhHhhhhHHHHHHHHhHHhhhh
Confidence 44555532 257888888887753
No 183
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=30.65 E-value=40 Score=33.01 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
|||-|-+-..|.++|.+.|++|+++.
T Consensus 7 TGatG~iG~~l~~~L~~~g~~V~~~~ 32 (347)
T 1orr_A 7 TGGCGFLGSNLASFALSQGIDLIVFD 32 (347)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred eCCCchhHHHHHHHHHhCCCEEEEEe
Confidence 57777777888899999999999985
No 184
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=30.62 E-value=51 Score=32.41 Aligned_cols=27 Identities=41% Similarity=0.436 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.||+|+++..
T Consensus 15 TGatGfIG~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 15 VGGTGFVASLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp ECTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEEc
Confidence 577777778888999999999998654
No 185
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=30.56 E-value=91 Score=27.64 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=31.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeE-EEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLV-EIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV-~VILPk 554 (720)
||+++|..- .|+ ..--+.-+-.+..++.+.||+| .|+.-.
T Consensus 1 mk~~iiv~~-~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINE-GPY--QHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECS-CTT--TSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 788888654 665 2356788889999999999999 887754
No 186
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=30.35 E-value=37 Score=36.46 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=28.8
Q ss_pred CCCceEEEEecccCCccccCCHHHH--HHHHHHHHHHC-CCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDV--VAGLGKALQKK-GHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDV--VgsLPKALa~l-GhEV~VILPkY 555 (720)
.++|+|++++ .++-|++ .-.|.++|+++ ||+|+++++..
T Consensus 4 ~~~~~vl~~p--------~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 4 SKTPHVAIIP--------SPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp --CCEEEEEC--------CSCHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CCCcEEEEec--------CcchhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 3458888885 2455555 46888999998 99999998864
No 187
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.24 E-value=43 Score=32.13 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.0
Q ss_pred ceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEE
Q 005005 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VI 551 (720)
|+|+.|+. -||.| .++..|+.+|++.|+.|-+|
T Consensus 1 M~vI~vs~-------KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 1 MRQVAIYG-------KGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp CEEEEEEE-------CTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CcEEEEec-------CCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 67777742 37777 68889999999999999887
No 188
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=30.23 E-value=64 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=26.8
Q ss_pred CceEEEEecccCCccccCCH-HHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGL-GDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|+|.+| |+ |.+-+.+.+.|.+.|++|.++-+.
T Consensus 11 mm~I~iI-----------G~tG~mG~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAIL-----------GAGGKMGARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCEEEEE-----------TTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred CCEEEEE-----------CCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4677776 55 888899999999999999987653
No 189
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=30.18 E-value=38 Score=35.85 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=34.2
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
.++ +-|++ +|-.|+|- +.|+.++..+++..|.+|+++.|.-
T Consensus 166 ~l~-l~ia~--a~~~~vGD-~rva~Sl~~~~~~~G~~v~~~~P~~ 206 (324)
T 1js1_X 166 RPK-VVMTW--APHPRPLP-QAVPNSFAEWMNATDYEFVITHPEG 206 (324)
T ss_dssp SCE-EEEEC--CCCSSCCC-SHHHHHHHHHHHTSSSEEEEECCTT
T ss_pred Cee-EEEEE--EcccccCC-cchHHHHHHHHHHCCCEEEEeCCcc
Confidence 456 66665 45557999 9999999999999999999999963
No 190
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=30.18 E-value=51 Score=32.58 Aligned_cols=28 Identities=21% Similarity=0.033 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 31 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 31 TGVAGFIGSNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4777777788899999999999998753
No 191
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=30.11 E-value=1.2e+02 Score=33.84 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 261 ~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+-+++|+.+..+....++.|+....+..-|..||+-+-+++.+|..
T Consensus 507 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~ 552 (605)
T 2kho_A 507 LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE 552 (605)
T ss_dssp CCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999888888888888888888888888888753
No 192
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=29.95 E-value=45 Score=33.28 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=27.4
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|||.+| |+|.+-..+.+.|++.||+|.++-+.
T Consensus 6 ~~~~I~iI-----------G~G~mG~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIV-----------GLGSMGMGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEE-----------CCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 34778777 67888889999999999999998653
No 193
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=29.73 E-value=2e+02 Score=25.33 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=46.9
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 005005 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (720)
Q Consensus 283 ~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l 362 (720)
+...|+--...+..+.++|..+.. ++.-+.++| |+|.....++-+--|.+-.+=+.|+..|+++
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s-~s~~~~~Tp---------------q~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLAT-QANNSHITP---------------QDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-HHHHTTSCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677788888888776 332233333 6677777778888888888889999999998
Q ss_pred HHH
Q 005005 363 EES 365 (720)
Q Consensus 363 ~~~ 365 (720)
++-
T Consensus 78 Ke~ 80 (93)
T 3t98_B 78 KEQ 80 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 194
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=29.57 E-value=89 Score=26.34 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=30.8
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHC-CC-eEEEEecCC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GH-LVEIVLPKY 555 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-Gh-EV~VILPkY 555 (720)
||+++|.+- .|+ ...-+..+-.+..++.+. |+ +|.|++-..
T Consensus 2 ~k~~ii~~~-~p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 2 QKIVIVANG-APY--GSESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp CEEEEEECC-CTT--TCSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred cEEEEEEcC-CCC--CcHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 588888654 565 335677778888898899 99 999988654
No 195
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=29.56 E-value=46 Score=31.50 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-.++.++|++.|+.|.++...
T Consensus 7 TGas~gIG~~~a~~l~~~G~~V~~~~r~ 34 (257)
T 1fjh_A 7 SGCATGIGAATRKVLEAAGHQIVGIDIR 34 (257)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555555567888999999999887654
No 196
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.38 E-value=55 Score=35.43 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=49.7
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
.+.|..|+..|+++...|+..++.+++++...+ +.+...+.+|..|...+.||.....+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~---~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCK---EQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 357899999999999999999998888776665 66888999999999999999766544
No 197
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=29.37 E-value=49 Score=33.41 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=26.3
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|||.+| |.|-+-+.+...|++.||+|+++-+.
T Consensus 13 ~~~kI~iI-----------G~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVL-----------GAGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEE-----------CcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34777766 56777788888999999999998663
No 198
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=29.25 E-value=42 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=25.9
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
+|||.+| |.|.+-+.+.+.|++.|++|.++.
T Consensus 23 mmkI~II-----------G~G~mG~~la~~l~~~g~~V~~v~ 53 (220)
T 4huj_A 23 MTTYAII-----------GAGAIGSALAERFTAAQIPAIIAN 53 (220)
T ss_dssp SCCEEEE-----------ECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEE-----------CCCHHHHHHHHHHHhCCCEEEEEE
Confidence 5788777 578888999999999999998843
No 199
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=29.21 E-value=51 Score=30.61 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=26.4
Q ss_pred ceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEE
Q 005005 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VI 551 (720)
|||++ +. -||.| .++..|+.+|++.|..|-+|
T Consensus 1 mkI~v-s~-------kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 1 MKLAV-AG-------KGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp CEEEE-EC-------SSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CEEEE-ec-------CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 77776 52 48887 57889999999999999998
No 200
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=29.12 E-value=51 Score=32.56 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=28.9
Q ss_pred chhhhHhhhhhchHHHHHhhhhccCCCCCCCceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEE
Q 005005 481 IRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 481 ~~~~~~~~~~~~~~e~~~~~~~~~~~~k~~~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VI 551 (720)
-..-|..|....+.+.- --..+....+..+|+|+.|+. .||.| .++..|+.+|++.|..|-+|
T Consensus 11 ~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vI~v~~-------KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 11 GSPKDLTIPTGADGEGS-VQVHLDEADKITGAKVFAVYG-------KGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp ------------------------------CCEEEEEEC-------STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcccccCCcCccccch-hhhhhccccccCCceEEEEEC-------CCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 34445556555554421 111223444566788888862 47777 68899999999999999998
No 201
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.94 E-value=1.8e+02 Score=27.56 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=20.0
Q ss_pred hhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 005005 302 SKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (720)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 345 (720)
.+++.-..+|+..+.++.= ++ ++.++.|....+.|.......
T Consensus 46 q~Ia~LP~eVsd~s~l~kl-kD-k~~~e~l~~~veeA~~~L~eY 87 (152)
T 4fla_A 46 QKIASLPQEVQDVSLLEKI-TD-KEAAERLSKTVDEACLLLAEY 87 (152)
T ss_dssp HHHHTSCGGGTCGGGGGGC-CS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccccCHHHHHHc-cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566555544320 11 456666655555444444333
No 202
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=28.87 E-value=53 Score=31.78 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~r 32 (312)
T 3ko8_A 6 TGGAGFIGSHLVDKLVELGYEVVVVDN 32 (312)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred ECCCChHHHHHHHHHHhCCCEEEEEeC
Confidence 577777778889999999999999854
No 203
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=28.86 E-value=56 Score=31.71 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.-.+|+|.+| |+|.+-++|.+.|++.||+|.++-+.
T Consensus 16 ~~~~~kIgiI-----------G~G~mG~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 16 YFQGMKIAVL-----------GTGTVGRTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp ---CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ccCCCeEEEE-----------CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456888777 68888899999999999999988664
No 204
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=28.82 E-value=40 Score=32.44 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=28.8
Q ss_pred CCCCceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEe
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VIL 552 (720)
..++|+|+.|++- -||.| .++..|+.+|+ +|..|-+|=
T Consensus 23 ~~~~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 23 DNKKPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp ---CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCCCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 3456888888652 58887 68889999999 999999983
No 205
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.66 E-value=1.3e+02 Score=27.11 Aligned_cols=72 Identities=29% Similarity=0.334 Sum_probs=43.9
Q ss_pred HHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhch
Q 005005 299 ELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSS 376 (720)
Q Consensus 299 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~ 376 (720)
-|+.+|..||+....-..--.-| =.-|.+|.+-|++-..|..+. .-+-++|+.++..|...|.+|.+-|.-|
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTC---NqTV~tL~~SL~kekaq~q~q---q~~v~elqgEI~~Lnq~Lqda~~~~~~~ 93 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSC---NLTVVTLQESLEKKVSQALEQ---QARIKELENEVTKLNQELENLRIQKETS 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777775543322111112 356888888888755543322 2256788888888888888887766544
No 206
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=28.58 E-value=7e+02 Score=28.37 Aligned_cols=25 Identities=20% Similarity=-0.004 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 282 RVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 282 ~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
.+....+....+++-|.+.|..+..
T Consensus 371 l~~~F~~~~~~~~~Wl~~~e~~l~~ 395 (863)
T 1sjj_A 371 LAEKFRQKASIHESWTDGKEAMLQQ 395 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555566667777777766654
No 207
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=28.48 E-value=4.3e+02 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005005 153 ARVQALEDLHKILQEKEALQG 173 (720)
Q Consensus 153 ~r~~a~~~~~~~~~ek~~lq~ 173 (720)
.....++++.+.+.|+-++..
T Consensus 18 ~g~~~~~el~~f~keRa~iE~ 38 (301)
T 2efk_A 18 WGLDLLDRYVKFVKERTEVEQ 38 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888877765543
No 208
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.45 E-value=2e+02 Score=25.84 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=55.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh-hhcchhhhhccccchhhhhhHH
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK-LSISQEDVAKLSTLKVECKDLY 325 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~ 325 (720)
.+-++++.|..++......+..|+.+|.. ...+-...|++++.++.-|.+|=.. |..|+.=|+.- +.++-.+-
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~e---E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a---r~e~~~~e 82 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAK---ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA---RKEKYAIE 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55666777777777777777776666543 3344455677777777777777533 45666666544 45566677
Q ss_pred HHHHHHHHHHHH
Q 005005 326 EKVENLQGLLAK 337 (720)
Q Consensus 326 ~~~~~l~~~l~~ 337 (720)
.|++.|+..|.-
T Consensus 83 ~kn~~L~~qL~d 94 (97)
T 2eqb_B 83 ILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888888877754
No 209
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.36 E-value=5.5e+02 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 005005 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (720)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (720)
|...+.|.++-..++.-+++-|.+|..-.+.|++.+..-|-
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 33444455555555556666777777777777777776654
No 210
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.19 E-value=66 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHH
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAE 272 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~ 272 (720)
|-.|-+|++.||++|..|..+.+.++..
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567788888999998888887776653
No 211
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=28.18 E-value=38 Score=34.77 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
.+++||.| |.|.|+....+.|.+.|+.|+||-|..
T Consensus 12 ~~k~VLVV-----------GgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLI-----------GGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEE-----------EESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEE-----------CCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 45677766 568899999999999999999999864
No 212
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.15 E-value=1.1e+02 Score=26.21 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHhHhh
Q 005005 350 QQNQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 350 ~~~~~l~~~~d~l~~~l~~~~ 370 (720)
..|++|+.+|-.|+..|+++.
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 457777777777777777654
No 213
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.14 E-value=76 Score=34.64 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=4.6
Q ss_pred CeEEEEecC
Q 005005 546 HLVEIVLPK 554 (720)
Q Consensus 546 hEV~VILPk 554 (720)
++++|-|-.
T Consensus 244 ~eL~I~L~d 252 (409)
T 1m1j_C 244 YALRIELED 252 (409)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEc
Confidence 555555543
No 214
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.11 E-value=66 Score=35.81 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=22.5
Q ss_pred HhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 005005 191 VAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (720)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (720)
++.+--+.+.++-+..+.++..|..|+.+
T Consensus 35 ~~~~pmlD~~~ir~n~~~v~~~l~~R~~~ 63 (501)
T 1wle_A 35 YSALPLLDMESLCAYPEDAARALDLRKGE 63 (501)
T ss_dssp SSCCCCCCHHHHHHSHHHHHHHHHHHTCS
T ss_pred CCCCCccCHHHHHhCHHHHHHHHHHcCCC
Confidence 45555677778888899999999998754
No 215
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=28.06 E-value=47 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 7 tGatG~iG~~l~~~L~~~g~~V~~~~r 33 (330)
T 2c20_A 7 CGGAGYIGSHAVKKLVDEGLSVVVVDN 33 (330)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ECCCcHHHHHHHHHHHhCCCEEEEEeC
Confidence 577777778889999999999999864
No 216
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=28.01 E-value=77 Score=30.83 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=21.5
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 17 TGatG~iG~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 17 TGANGFVASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred ECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 466666667788899999999998864
No 217
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.97 E-value=1.5e+02 Score=25.45 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 379 MQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
++++-+.++.|...+-.+=.. =++....++-+...|.++|.-||++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-IDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
No 218
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.97 E-value=2.5e+02 Score=25.18 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh--hchh-hHHHHHHHHHHHHHHHHHHHHhhHHh
Q 005005 355 LRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ--RSDE-EIHSYVQLYQESVKEFQDTLHSLKEE 428 (720)
Q Consensus 355 l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 428 (720)
-+..+|+|++..+.-... .+ -+..|++++.-.++-|+ ++|+ .+++-.+-++..+.-.|.-+++|+.+
T Consensus 21 kq~~id~lke~~~q~~~~---~E----~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIV---ME----TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777744432221 23 34678888888887775 3343 35555555555555555555555544
No 219
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=27.94 E-value=1.7e+02 Score=29.91 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=29.3
Q ss_pred cccccc--chhHHHHHHHhhhhhH-HHHHHHHHH--HH----HHHHHHHHHHHHhhhhhhHHHhh
Q 005005 126 EELSTS--QLDNLISMIRNAEKNI-LLLNEARVQ--AL----EDLHKILQEKEALQGEINALEMR 181 (720)
Q Consensus 126 ~~~~~~--~~~~~~~~~~~~~~~i-~~l~~~r~~--a~----~~~~~~~~ek~~lq~~~~~l~~~ 181 (720)
+.|+|+ .|.-|+.-|-++|... --+.+.|.. ++ +.|+.+...|+.|+.+|.-|+.+
T Consensus 62 ddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k 126 (234)
T 3plt_A 62 DDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYK 126 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 344444 3444444444444432 233444431 12 34555666778888888877765
No 220
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=27.78 E-value=39 Score=32.50 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=28.7
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
+-++|+||. |||-|-+-..|.++|.+.|++|+++......+
T Consensus 9 ~~~~~~vlV----------tGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl 49 (292)
T 1vl0_A 9 HHHHMKILI----------TGANGQLGREIQKQLKGKNVEVIPTDVQDLDI 49 (292)
T ss_dssp ---CEEEEE----------ESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT
T ss_pred ccccceEEE----------ECCCChHHHHHHHHHHhCCCeEEeccCccCCC
Confidence 456677774 47777777888899999999999987653333
No 221
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=27.62 E-value=56 Score=31.84 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 8 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 8 TGGTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5777777788899999999999999765
No 222
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=27.44 E-value=77 Score=33.13 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=26.6
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHC--CCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l--GhEV~VILPk 554 (720)
+|||++|+.+-+-+.| ...|-++|.+. |+++.++.++
T Consensus 27 ~~kI~~v~Gtr~~~~~-------~a~li~~l~~~~~~~~~~~~~tG 65 (403)
T 3ot5_A 27 KIKVMSIFGTRPEAIK-------MAPLVLALEKEPETFESTVVITA 65 (403)
T ss_dssp CEEEEEEECSHHHHHH-------HHHHHHHHHTCTTTEEEEEEECC
T ss_pred cceEEEEEecChhHHH-------HHHHHHHHHhCCCCCcEEEEEec
Confidence 4799999987544332 25677888877 6888888775
No 223
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=27.42 E-value=65 Score=33.00 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHH--HHHHHC--CCeEEEEecCC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLG--KALQKK--GHLVEIVLPKY 555 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLP--KALa~l--GhEV~VILPkY 555 (720)
.-+++|||+|. .+++||++..+| ++|++. |..+.++++..
T Consensus 5 ~l~~~~iLvi~--------~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~ 48 (349)
T 3tov_A 5 ELDYKRIVVTF--------LMHLGDVILTTPFLEVLRKAAPHSHITYVIDEK 48 (349)
T ss_dssp CCTTCEEEEEC--------CCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGG
T ss_pred CCCCCEEEEEe--------cCcccHHHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 34678999884 579999998887 677776 78888886653
No 224
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=27.32 E-value=52 Score=35.10 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=29.6
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
++||++++ .| ..|----+-.|.+.|+++||+|+++++..
T Consensus 8 ~~~vl~~p---~p---~~GHi~P~l~La~~L~~rG~~VT~v~t~~ 46 (482)
T 2pq6_A 8 KPHVVMIP---YP---VQGHINPLFKLAKLLHLRGFHITFVNTEY 46 (482)
T ss_dssp CCEEEEEC---CS---SHHHHHHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred CCEEEEec---Cc---cchhHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 47999886 33 24555556788899999999999998753
No 225
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.13 E-value=1.4e+02 Score=33.35 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 146 NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 146 ~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
.|+-|.+.|..+..+++.+.+++.++..+|..+...=.+.++-+.-+.+-+-.+.-+|+++..+..+|..
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888898888999999999999998887764332333333333444455555667777766666654
No 226
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=27.06 E-value=3.3e+02 Score=24.12 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhh----HHHHHHHHHHHHHHhHh-------hhhhhchH---HHHHHHHHHHHHHHHHHH
Q 005005 330 NLQGLLAKATKQADQAISVLQQN----QELRKKVDKLEESLDEA-------NIYKLSSE---KMQQYNELMQQKMKLLEE 395 (720)
Q Consensus 330 ~l~~~l~~~~~~~~~~~~~~~~~----~~l~~~~d~l~~~l~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~ 395 (720)
.|+.+|+-+.+..|+|...|.+- +..+.+++.|+....+. ...-.++. ..++|...|.+.|.....
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 88 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777888777766553 22344444444433221 11123333 556677777777877777
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005005 396 RLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (720)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 427 (720)
.+.....++...-+.+.+...+-+ ++.+|++
T Consensus 89 ~l~~~~~~~e~~r~~l~~a~~~~k-~~e~L~e 119 (150)
T 3ajw_A 89 QLTQWTQKVDLALKSWREKKQRLQ-AWQTLQD 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 777777777776666666555543 3455553
No 227
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.98 E-value=79 Score=28.80 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=29.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||+.|-. ..+|.-..++..+.+.|.+.|++|.++-.
T Consensus 1 Mkv~IvY~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 37 (161)
T 3hly_A 1 MSVLIGYL-----SDYGYSDRLSQAIGRGLVKTGVAVEMVDL 37 (161)
T ss_dssp -CEEEEEC-----TTSTTHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEEEE-----CCChHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 66665532 34899999999999999999999988743
No 228
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.80 E-value=2.5e+02 Score=26.78 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=43.7
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhhcCCCCcccccccCCcccchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
+|+=|.|-+|.||...++||+. |.-..+.++..+=-.++.+|+.|+.-+...+
T Consensus 29 kVDDLQD~VE~LRkDV~~Rgvr---------------------------P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ek 81 (141)
T 3okq_A 29 KVDDLQDVIEIMRKDVAERRSQ---------------------------PAKKKLETVSKDLENAQADVLKLQEFIDTEK 81 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHcCCC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4667788899999999999988 4467777777777777777777777777666
Q ss_pred hhhh
Q 005005 278 DADE 281 (720)
Q Consensus 278 ~~~~ 281 (720)
.+=+
T Consensus 82 P~WK 85 (141)
T 3okq_A 82 PHWK 85 (141)
T ss_dssp HHHH
T ss_pred chhH
Confidence 5544
No 229
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=26.79 E-value=60 Score=30.84 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=26.5
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
..+|+|.+| |.|.+-+++...|++.|++|.++-+.
T Consensus 17 ~~~~~I~ii-----------G~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 17 FQGMEITIF-----------GKGNMGQAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp ---CEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cCCCEEEEE-----------CCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 355788776 46778889999999999999988654
No 230
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=26.77 E-value=46 Score=32.89 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=26.5
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|||.+| |+|.+-..+.+.|++.||+|.++-+.
T Consensus 3 m~~I~ii-----------G~G~mG~~~a~~l~~~G~~V~~~d~~ 35 (302)
T 2h78_A 3 MKQIAFI-----------GLGHMGAPMATNLLKAGYLLNVFDLV 35 (302)
T ss_dssp CCEEEEE-----------CCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEE-----------eecHHHHHHHHHHHhCCCeEEEEcCC
Confidence 5777776 56677778889999999999998664
No 231
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.74 E-value=38 Score=33.72 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|.|.|+....+.|.+.|.+|+||-|..
T Consensus 38 GgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 38 GGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp CCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 348999999999999999999999974
No 232
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=26.69 E-value=53 Score=32.55 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 27 TGatG~iG~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 27 TGICGQIGSHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred eCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence 4666666678888999999999998653
No 233
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=26.68 E-value=42 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-+-+-.++.+.|++.|+.|.++-..
T Consensus 7 TGas~gIG~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 7 TGASSGLGAELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp ESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ecCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555578889999999998887653
No 234
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=26.67 E-value=3.9e+02 Score=24.77 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=26.9
Q ss_pred hhhhhhhcchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHHHH
Q 005005 254 SLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKELE 301 (720)
Q Consensus 254 ~~~~en~~~k~~~~~~k~~~~~~----~~~~~~~~~~~~e~~~l~~~~~~~e 301 (720)
.|+.||--|+...+.++..+... .+....+..|+.+...|...++++.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665544432 3344455555666665655555555
No 235
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=26.64 E-value=46 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|+|-+-+.+...|++.||+|+++.+
T Consensus 7 G~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 7 GAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp SCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 4577778888899999999999976
No 236
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.54 E-value=85 Score=29.92 Aligned_cols=35 Identities=43% Similarity=0.626 Sum_probs=28.0
Q ss_pred ceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEe
Q 005005 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VIL 552 (720)
|+|+.|++ . -||.| .++..|+.+|++.|..|.+|=
T Consensus 2 ~~~I~v~s-----~-kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 2 VRTITVAS-----G-KGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp CEEEEEEE-----S-SSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEC-----C-CCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57777765 2 36555 789999999999999999985
No 237
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=26.51 E-value=83 Score=31.94 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=29.1
Q ss_pred cCCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 504 TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 504 ~~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+.|...++|||+++.+ | .....+.+++.++|++|.++-+.
T Consensus 4 ~~pm~~~~~~ili~g~--------g---~~~~~~~~a~~~~G~~v~~~~~~ 43 (391)
T 1kjq_A 4 GTALRPAATRVMLLGS--------G---ELGKEVAIECQRLGVEVIAVDRY 43 (391)
T ss_dssp CCTTSTTCCEEEEESC--------S---HHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCCCCCEEEEECC--------C---HHHHHHHHHHHHcCCEEEEEECC
Confidence 4444567789998852 3 24466788999999999988764
No 238
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=26.47 E-value=94 Score=28.97 Aligned_cols=38 Identities=34% Similarity=0.365 Sum_probs=29.3
Q ss_pred CceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VILPk 554 (720)
|++|+.|++- -||.| .++..|+.+|+++|..|-+|=.-
T Consensus 1 M~~~i~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 1 MGRIISIVSG------KGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CCEEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEecC------CCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3578877752 36655 68999999999999999998543
No 239
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=26.46 E-value=35 Score=31.84 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCC---cEEEECchhhhhHHHHHHHhhCcCCCCCCCEEEEecCCCccccCCcc
Q 005005 629 AALELLLQAGKQP---DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAK 688 (720)
Q Consensus 629 AALElL~klg~kP---DIIHcHDWHTALVaPLyLk~y~~~gf~~iptVFTIHNLaYQGiFp~~ 688 (720)
..+..+.+.|+++ +|+|-|.|..+ .-|++||+.|+.--|.|+++
T Consensus 23 ~l~~~~~~~Gf~~G~~gifhr~~~~~g----------------~g~vlFSlan~~~pg~Fd~~ 69 (140)
T 1f46_A 23 LLLNSIQQAGFIFGDMNIYHRHLSPDG----------------SGPALFSLANMVKPGTFDPE 69 (140)
T ss_dssp HHHHHHHHTTEEECGGGSEEEESSTTC----------------CSCEEEEEEESSTTCCCCTT
T ss_pred HHHHHHHHcCCeeCCCCceEEccccCC----------------CCCEEEEEEecCCCCCCCcc
Confidence 3445566677766 89999987533 24799999999889999876
No 240
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=26.30 E-value=70 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
.++||.+|. .||.| +.++.+.|.++|++|++.=
T Consensus 3 ~~~~i~~iG--------iGg~G--ms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 3 AMKHIHIIG--------IGGTF--MGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CCCEEEEES--------CCSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEEE--------ECHHH--HHHHHHHHHhCCCEEEEEc
Confidence 467887775 57777 4567788999999999873
No 241
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=26.26 E-value=2.4e+02 Score=31.43 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=48.7
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHH
Q 005005 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLA 336 (720)
Q Consensus 261 ~~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 336 (720)
+=+++|+.+..+....++.|+....+..-|..||+-+-++++.+.. .-.+++. .|...+-++++.++..|+
T Consensus 507 ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~l~ 577 (605)
T 4b9q_A 507 LNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEE---AGDKLPA--DDKTAIESALTALETALK 577 (605)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HGGGSCH--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhCCH--HHHHHHHHHHHHHHHHHh
Confidence 4478899999999999999988888888888888888888887753 1223322 233344555555555554
No 242
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=26.24 E-value=65 Score=31.98 Aligned_cols=27 Identities=22% Similarity=0.046 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 33 tGatG~iG~~l~~~L~~~g~~V~~~~r 59 (352)
T 1sb8_A 33 TGVAGFIGSNLLETLLKLDQKVVGLDN 59 (352)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 466666777888999999999999865
No 243
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=26.21 E-value=61 Score=31.95 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=28.4
Q ss_pred CceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEe
Q 005005 511 GLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VIL 552 (720)
+|+|+.|++- -||.| .++..|+.+|++.|..|.+|=
T Consensus 3 M~kvI~v~s~------KGGvGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 3 ETRVIVVGNE------KGGAGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp -CEEEEECCS------SSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4678877652 47777 689999999999999998873
No 244
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.16 E-value=52 Score=29.90 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=26.9
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHC-CCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~l-GhEV~VILPk 554 (720)
.+++|+++ |+|.+-..+.+.|.+. |++|.++-+.
T Consensus 38 ~~~~v~Ii-----------G~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 38 GHAQVLIL-----------GMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TTCSEEEE-----------CCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCCcEEEE-----------CCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 35677765 4678888888999999 9999999764
No 245
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=26.10 E-value=63 Score=33.91 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
-.+++|++| |-++.|+.+|..+++..|.+|+++.|.-
T Consensus 153 l~gl~va~v----------GD~~rva~Sl~~~~~~~g~~v~~~~P~~ 189 (315)
T 1pvv_A 153 IKGVKVVYV----------GDGNNVAHSLMIAGTKLGADVVVATPEG 189 (315)
T ss_dssp CTTCEEEEE----------SCCCHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCCcEEEEE----------CCCcchHHHHHHHHHHCCCEEEEECCcc
Confidence 467888886 4458999999999999999999999963
No 246
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.08 E-value=38 Score=29.73 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=22.3
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
.+..+...|..||..|+..|+.|+.++....
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888887777765443
No 247
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=25.94 E-value=65 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..+.+.|. .|++|.++...
T Consensus 9 tGasg~iG~~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 9 IGASGTLGSAVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp ETTTSHHHHHHHHHHT-TTSEEEEEESS
T ss_pred EcCCcHHHHHHHHHHH-CCCeEEEEecC
Confidence 3555555577788999 99999988654
No 248
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.83 E-value=32 Score=24.29 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=20.7
Q ss_pred hhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 251 ELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 251 ~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
|++.|.=||-.|...|.+||+++...+
T Consensus 1 eidalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHhc
Confidence 356677788888888999998876543
No 249
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.76 E-value=1.4e+02 Score=32.69 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc
Q 005005 146 NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 146 ~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (720)
.|+-|.+.|.....+++.+.++..++.++|..+...=.+.++-+.-+.+-+-.+.-+|+++..+..++...
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888876543323333333444444556667777777777777554
No 250
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.75 E-value=89 Score=28.19 Aligned_cols=26 Identities=42% Similarity=0.417 Sum_probs=20.5
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhc
Q 005005 281 ERVVMLEMERSSLESSLKELESKLSI 306 (720)
Q Consensus 281 ~~~~~~~~e~~~l~~~~~~~e~~~~~ 306 (720)
+.|..|++|+..|...+..||.+|--
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888888888888865
No 251
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=25.75 E-value=64 Score=31.73 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|+|.+-..+.+.|++.||+|.++-+.-
T Consensus 8 G~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 8 GLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred eecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 678888889999999999999886653
No 252
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=25.74 E-value=79 Score=29.20 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=31.7
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHH-CCCeEEEEec
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLP 553 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~-lGhEV~VILP 553 (720)
+.+|||+.|.. ..+|.-..++..+.+.|.+ .|++|.++-.
T Consensus 2 ~~M~kiliiy~-----S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l 42 (188)
T 2ark_A 2 NAMGKVLVIYD-----TRTGNTKKMAELVAEGARSLEGTEVRLKHV 42 (188)
T ss_dssp CCCEEEEEEEC-----CSSSHHHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred CCCCEEEEEEE-----CCCcHHHHHHHHHHHHHhhcCCCeEEEEEh
Confidence 34678988754 2478889999999999998 9999988844
No 253
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=25.71 E-value=64 Score=32.42 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=27.8
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|+|.+| |+|.+-..+.+.|.+.||+|.++-+.
T Consensus 8 ~~~~IgiI-----------G~G~mG~~~A~~l~~~G~~V~~~dr~ 41 (306)
T 3l6d_A 8 FEFDVSVI-----------GLGAMGTIMAQVLLKQGKRVAIWNRS 41 (306)
T ss_dssp CSCSEEEE-----------CCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCeEEEE-----------CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45677766 68888899999999999999988554
No 254
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=25.66 E-value=4e+02 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.050 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005005 408 VQLYQESVKEFQDTLHS 424 (720)
Q Consensus 408 ~~~~~~~~~~~~~~l~~ 424 (720)
++.|...++.+.+.|..
T Consensus 112 l~~F~~d~~~~~~Wl~~ 128 (185)
T 3lbx_B 112 VCQFSRDASVAEAWLIA 128 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 45667777777776664
No 255
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=25.62 E-value=51 Score=29.55 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||-|-+-..+.++|.+.|++|.++...
T Consensus 9 tGatG~iG~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 9 FGATGQTGLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp ESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EcCCcHHHHHHHHHHHHCCCeEEEEEeC
Confidence 4666667788889999999999998764
No 256
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.58 E-value=2.7e+02 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=14.3
Q ss_pred hhhhhhhHhhhHHHHHHHHHHhhh
Q 005005 192 AAQEKIHVELLEDQLQKLQHELTH 215 (720)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~ 215 (720)
..+.+-.+.++..+|..++..+.+
T Consensus 392 ~~e~~~~~~~~~~~~~~~~~~~~~ 415 (471)
T 3mq9_A 392 VMEARNVTHLLQQELTEAQKGFQD 415 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhhHHH
Confidence 334444555666677666666665
No 257
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.54 E-value=3.7e+02 Score=28.32 Aligned_cols=25 Identities=4% Similarity=0.112 Sum_probs=10.5
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAEL 273 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~ 273 (720)
...+..+-.-+++.++-++.+..++
T Consensus 358 ~~~~~~vl~G~~t~eeal~~~~~~i 382 (471)
T 3mq9_A 358 RTAVINAASGRQTVDEALKDAQTRI 382 (471)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 258
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=25.54 E-value=68 Score=31.69 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
-.+|+||.. ||-|-+-..|.++|.+.|++|+++..
T Consensus 18 ~~~~~vlVT----------GasG~iG~~l~~~L~~~g~~V~~~~r 52 (330)
T 2pzm_A 18 GSHMRILIT----------GGAGCLGSNLIEHWLPQGHEILVIDN 52 (330)
T ss_dssp TTCCEEEEE----------TTTSHHHHHHHHHHGGGTCEEEEEEC
T ss_pred CCCCEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 355777643 55555667788899999999999875
No 259
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=25.52 E-value=52 Score=31.69 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|+|.+-+.+.+.|.+.||+|.++-+
T Consensus 7 G~G~mG~~la~~l~~~g~~V~~~~~ 31 (264)
T 1i36_A 7 GFGEVAQTLASRLRSRGVEVVTSLE 31 (264)
T ss_dssp SCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred echHHHHHHHHHHHHCCCeEEEeCC
Confidence 6788888899999999999988543
No 260
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=25.39 E-value=57 Score=34.18 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=27.8
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|+|.+| |+|.+-..+.+.|++.||+|.++-+.
T Consensus 22 ~mkIgiI-----------GlG~mG~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 22 SMQIGMI-----------GLGRMGADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEE-----------CchHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3677776 68888899999999999999998654
No 261
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.21 E-value=3.4e+02 Score=23.60 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 407 YVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
--+-+++.|.+||.+-..-++..+.
T Consensus 100 L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 100 LSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677777777765555555443
No 262
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.20 E-value=4.9e+02 Score=25.49 Aligned_cols=30 Identities=10% Similarity=0.317 Sum_probs=20.4
Q ss_pred HHHHHHHhhc--hhhHHHHHHHHHHHHHHHHH
Q 005005 391 KLLEERLQRS--DEEIHSYVQLYQESVKEFQD 420 (720)
Q Consensus 391 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 420 (720)
..+++.|... +.++..+|+-|...=+..|.
T Consensus 145 ~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~ 176 (192)
T 2p22_C 145 SQLETTTRSIDSADDLDQFIKNYLDIRTQYHL 176 (192)
T ss_dssp HHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccchHHHHHHHHHHHHHHHHH
Confidence 3455566554 67888888888877766643
No 263
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=25.11 E-value=2.6e+02 Score=28.48 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=37.1
Q ss_pred hhhHHHHH-HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhH----hhhhhhchHHHHHHHHHHHH
Q 005005 321 CKDLYEKV-ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE----ANIYKLSSEKMQQYNELMQQ 388 (720)
Q Consensus 321 ~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~----~~~~~~~~~~~~~~~~~~~~ 388 (720)
.+++|++. +..|..+..|...+.... .+..+..-++..+.|++ ..|+.++.+.++.+.+.++.
T Consensus 230 n~~~w~~L~~e~q~~i~~aa~~~~~~~-----~~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~ 297 (326)
T 3fxb_A 230 NKDFYDGLSAEDQQLVQNAALAAYDHT-----VVYQQQAADTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAE 297 (326)
T ss_dssp EHHHHHHSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHH
T ss_pred eHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHH
Confidence 46789998 678888888776554432 12222222222233443 35788888877666655543
No 264
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=25.05 E-value=1.7e+02 Score=23.61 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 005005 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 410 (720)
Q Consensus 353 ~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (720)
++++.++..||+.|..+...--+- ++.|.++|.-|+++ |.||.+|=.+
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q--~~eYq~LlniK~~L--------e~EIatYRkL 50 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARL--KKLVGDLLNVKMAL--------DIEIATYRKL 50 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh--------HHHHHHHHHH
No 265
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=24.95 E-value=60 Score=30.90 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|+|.+| |.|.+...+.+.|.+.|++|.++-+.
T Consensus 27 ~~~~I~ii-----------G~G~~G~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGIL-----------GSGDFARSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp --CCEEEE-----------CCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEE-----------ccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45788776 36777778888999999999887654
No 266
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.91 E-value=54 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 005005 376 SEKMQQYNELMQQKMKLLEERLQR 399 (720)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~ 399 (720)
-++|++.|+-|++|+..|.+++++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 267
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.90 E-value=38 Score=27.24 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=23.6
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
+..|..+...|..||..|+..|+.|+.++...+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888777765543
No 268
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.86 E-value=2.2e+02 Score=24.73 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHhHhh
Q 005005 352 NQELRKKVDKLEESLDEAN 370 (720)
Q Consensus 352 ~~~l~~~~d~l~~~l~~~~ 370 (720)
|++|+.+|-.|+..|+++.
T Consensus 22 N~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4445555555555444443
No 269
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=24.86 E-value=56 Score=34.78 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
-.++||+|| |-++.|+.++..+++..|.+|+++.|.
T Consensus 177 l~glkva~v----------GD~~nva~Sl~~~~~~~G~~v~~~~P~ 212 (340)
T 4ep1_A 177 FKGIKLAYV----------GDGNNVCHSLLLASAKVGMHMTVATPV 212 (340)
T ss_dssp CTTCEEEEE----------SCCCHHHHHHHHHHHHHTCEEEEECCT
T ss_pred CCCCEEEEE----------CCCchhHHHHHHHHHHcCCEEEEECCc
Confidence 467899987 445789999999999999999999996
No 270
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=24.84 E-value=69 Score=31.87 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=30.2
Q ss_pred CCCceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEE
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VI 551 (720)
..+|+|++|++- .||-| .++..|+.+|++.|..|-+|
T Consensus 79 ~~~~kvI~vts~------kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 79 DSAVQSIVITSE------APGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp TCCCCEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEEECC------CCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 456889988862 46655 68999999999999999888
No 271
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.82 E-value=1.2e+02 Score=28.81 Aligned_cols=77 Identities=27% Similarity=0.343 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH-hHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL-DEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (720)
+-++...|+.-|.....+-..| =.+...+...|+.|-+|| ++||-- ++.... -...++.|+..|++++...+.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~a---E~~~~~ie~ElE~LTasLFeEAN~M-Va~ar~--~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKA---EEEADKLNKEVEDLTASLFDEANNL-VADARM--EKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHH---HHTTHHHHHHHHHHHHHHHHHHHHH-HHHTTH--HHHHHHHHHHHHHHTTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333222 345667788888898887 566632 222322 335677777778777776655
Q ss_pred hHHH
Q 005005 403 EIHS 406 (720)
Q Consensus 403 ~~~~ 406 (720)
=+.+
T Consensus 118 ll~~ 121 (135)
T 2e7s_A 118 LLDT 121 (135)
T ss_dssp CC--
T ss_pred HHHH
Confidence 4444
No 272
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=24.80 E-value=1.4e+02 Score=27.59 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=32.6
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeE-EEEec
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLV-EIVLP 553 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV-~VILP 553 (720)
-.||++++... +|+ ..--+.-+-.+..++.+.||+| .|++-
T Consensus 11 ~~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~ 52 (140)
T 2d1p_A 11 GSMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFFY 52 (140)
T ss_dssp CCCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEEe
Confidence 35999998665 776 3457888889999999999999 87764
No 273
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=24.77 E-value=99 Score=29.15 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=28.8
Q ss_pred CceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEec
Q 005005 511 GLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VILP 553 (720)
+++|+.|++- .||.| .++..|+.+|+++|..|-+|=.
T Consensus 1 M~~vi~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (260)
T 3q9l_A 1 MARIIVVTSG------KGGVGKTTSSAAIATGLAQKGKKTVVIDF 39 (260)
T ss_dssp -CEEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECC------CCCCcHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4688888752 46665 6889999999999999999843
No 274
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=24.72 E-value=67 Score=31.43 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=27.4
Q ss_pred CceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEE
Q 005005 511 GLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VI 551 (720)
+|+|+.|+. -||.| .++..|+.+|++.|+.|-+|
T Consensus 1 ~MkvIavs~-------KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 1 AMRQCAIYG-------KGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CCEEEEEEE-------CTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEeC-------CCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 488887742 37776 48889999999999999888
No 275
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.71 E-value=43 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~~ 277 (720)
.+......|..||..|+..|+.|+.++...+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888877776554
No 276
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=24.71 E-value=60 Score=32.26 Aligned_cols=27 Identities=26% Similarity=0.145 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 7 tGatG~iG~~l~~~L~~~g~~V~~~~r 33 (372)
T 1db3_A 7 TGVTGQDGSYLAEFLLEKGYEVHGIKR 33 (372)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 477777777888999999999998864
No 277
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=24.66 E-value=58 Score=34.41 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
-.++||++| |-++.|+.++..+++..|.+|+++.|.
T Consensus 155 l~glkva~v----------GD~~rva~Sl~~~~~~~G~~v~~~~P~ 190 (323)
T 3gd5_A 155 LAGLKLAYV----------GDGNNVAHSLLLGCAKVGMSIAVATPE 190 (323)
T ss_dssp CTTCEEEEE----------SCCCHHHHHHHHHHHHHTCEEEEECCT
T ss_pred CCCCEEEEE----------CCCCcHHHHHHHHHHHcCCEEEEECCC
Confidence 467899876 445899999999999999999999996
No 278
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=24.65 E-value=73 Score=31.65 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|+|-+-.++...|++.|++|+++-+.
T Consensus 22 G~G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 22 GGGLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 45667778888999999999998654
No 279
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=24.56 E-value=80 Score=30.59 Aligned_cols=28 Identities=7% Similarity=-0.150 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-.++.++|.+.|++|.++...
T Consensus 37 TGasggIG~~la~~L~~~G~~V~~~~r~ 64 (272)
T 1yb1_A 37 TGAGHGIGRLTAYEFAKLKSKLVLWDIN 64 (272)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 3555555577889999999999887643
No 280
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=24.51 E-value=72 Score=31.56 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 33 tGatG~iG~~l~~~L~~~g~~V~~~~r 59 (343)
T 2b69_A 33 TGGAGFVGSHLTDKLMMDGHEVTVVDN 59 (343)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EcCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 466666777888999999999999865
No 281
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=24.48 E-value=66 Score=32.52 Aligned_cols=33 Identities=30% Similarity=0.523 Sum_probs=24.2
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|||.+| |.|-+-+.+...|++.||+|+++ .+
T Consensus 18 ~~~kI~Ii-----------GaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 18 QGMKVAIM-----------GAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp --CEEEEE-----------SCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cCCcEEEE-----------CcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 45888877 44555577778899999999988 54
No 282
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=24.47 E-value=69 Score=32.00 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=24.5
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+|||.+| |+|-+-..+...|++.||+|.++-+.
T Consensus 4 ~mki~ii-----------G~G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVL-----------GLGNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCeEEEE-----------CCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3788776 34556667778899999999988653
No 283
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.45 E-value=4.6e+02 Score=27.74 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=11.7
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhh
Q 005005 280 DERVVMLEMERSSLESSLKELESK 303 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~ 303 (720)
++.+....++....+..+++++.+
T Consensus 373 e~~~~~~~~~~~~~~~~~~~~~~~ 396 (487)
T 3oja_A 373 DEQVSNGRRAHAELDGTLQQAVGQ 396 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHhhch
Confidence 444444455555555555555444
No 284
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=24.45 E-value=73 Score=31.26 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=22.6
Q ss_pred cCCHHH-HHHHHHHHHHHC-CCeEEEEecC
Q 005005 527 VGGLGD-VVAGLGKALQKK-GHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGD-VVgsLPKALa~l-GhEV~VILPk 554 (720)
|||.|- .+..|-+.|.+. |++|+||+-.
T Consensus 8 TGsiaa~k~~~ll~~L~~~~g~~V~vv~T~ 37 (197)
T 1sbz_A 8 TGATGAPLGVALLQALREMPNVETHLVMSK 37 (197)
T ss_dssp CSSSCHHHHHHHHHHHHTCTTCEEEEEECH
T ss_pred eChHHHHHHHHHHHHHHhccCCEEEEEECc
Confidence 677655 577888999999 9999999754
No 285
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=24.43 E-value=51 Score=33.31 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=27.2
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCC-eEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH-LVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGh-EV~VILPk 554 (720)
.+|+|.+| |+|.+-..+.+.|++.|| +|.++-+.
T Consensus 23 ~~~~I~iI-----------G~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFI-----------GFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEE-----------CCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEE-----------CccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 35788877 678888899999999999 99998763
No 286
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=24.42 E-value=46 Score=32.11 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||-|-+-..+.++|.+.|++|+++...
T Consensus 8 tGatG~iG~~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 8 LGPTGAIGRHIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp ESTTSTTHHHHHHHHHHHTCCEEEEECC
T ss_pred ECCCchHHHHHHHHHHhCCCcEEEEECC
Confidence 3555555566778999999999998764
No 287
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=24.41 E-value=1e+02 Score=28.17 Aligned_cols=38 Identities=5% Similarity=0.153 Sum_probs=30.3
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
+|||+.|..= | +|--..++..+.+.+.+.|++|.++-.
T Consensus 5 M~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l 42 (200)
T 2a5l_A 5 SPYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRTV 42 (200)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEBC
T ss_pred cceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 4699887642 3 677888999999999999999988743
No 288
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=24.39 E-value=90 Score=28.45 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=29.4
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHH-CCCeEEEEe
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVL 552 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~-lGhEV~VIL 552 (720)
+|||+.|..= .+|--..++..+.+.+.+ .|++|.++-
T Consensus 1 Mmkilii~~S-----~~g~t~~la~~i~~~l~~~~g~~v~~~~ 38 (198)
T 3b6i_A 1 MAKVLVLYYS-----MYGHIETMARAVAEGASKVDGAEVVVKR 38 (198)
T ss_dssp -CEEEEEECC-----SSSHHHHHHHHHHHHHHTSTTCEEEEEE
T ss_pred CCeEEEEEeC-----CCcHHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4788887542 368788899999999998 899999884
No 289
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=24.39 E-value=64 Score=34.29 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
-.++||+|| |-++.|+.++..+++..|.+|+++.|.
T Consensus 173 l~glkva~v----------GD~~rva~Sl~~~~~~~G~~v~~~~P~ 208 (339)
T 4a8t_A 173 LEDCKVVFV----------GDATQVCFSLGLITTKMGMNFVHFGPE 208 (339)
T ss_dssp GGGCEEEEE----------SSCCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCCCEEEEE----------CCCchhHHHHHHHHHHcCCEEEEECCc
Confidence 456888876 444899999999999999999999996
No 290
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=24.32 E-value=75 Score=31.95 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHH-HCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQ-KKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa-~lGhEV~VILP 553 (720)
|||-|-+-..|.++|. +.|++|+++..
T Consensus 8 TGatG~iG~~l~~~L~~~~g~~V~~~~r 35 (397)
T 1gy8_A 8 CGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (397)
T ss_dssp ETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred ECCCCHHHHHHHHHHHHhCCCEEEEEec
Confidence 4666666677888999 99999999853
No 291
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.28 E-value=1.2e+02 Score=26.90 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 005005 321 CKDLYEKVENLQGLLAKATKQ 341 (720)
Q Consensus 321 ~~~~~~~~~~l~~~l~~~~~~ 341 (720)
++.|..|+..|+.-+.+++.+
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 292
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.21 E-value=5.3e+02 Score=25.49 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 379 MQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
++.-++.|+.++-.||- .+.++....+....|++.|+.-|+...+...-
T Consensus 100 l~~~~~~l~~~ireLEq----~NDdlEr~~R~~~~SleD~e~kln~aiEr~al 148 (189)
T 2v71_A 100 TRAIKEQLHKYVRELEQ----ANDDLERAKRATIMSLEDFEQRLNQAIERNAF 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33445666666666654 35566667777888999999998888876654
No 293
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=24.18 E-value=2.8e+02 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHH
Q 005005 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNE 384 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~ 384 (720)
...+++..++.+|+.+. +-+.-.++-..+..|+..+.+|.. -+.++++++|-+
T Consensus 39 ~F~~~~~~Ie~~l~~~~--------~~~~ld~i~~~I~~Lqk~v~das~-fLp~YD~R~~q~ 91 (111)
T 2l3l_A 39 TFARERAAVEELLERAE--------SVERLEEAASRLQGLQKLINDSVF-FLAAYDLRQGQE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHCC--------SHHHHHHHHHHHHHHHHHHHHSTT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHH
Confidence 45566777777776432 112234556677777777777654 477777765543
No 294
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=24.16 E-value=2.3e+02 Score=27.71 Aligned_cols=83 Identities=12% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHH-HHHHHHHhHhhhhhhchH-H----HHHHHHHHHHHHHHHHHHHhhchhhH
Q 005005 331 LQGLLAKATKQADQAISVLQQNQELRKKV-DKLEESLDEANIYKLSSE-K----MQQYNELMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 331 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~-d~l~~~l~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (720)
+.+-++.+++.|+.|+.-|++ .+|.+++ ..+.+++++.+.|.-... + .+.+-..+.+-...|-.++++-=+++
T Consensus 14 ~w~Y~~~l~~~a~~~v~~l~~-sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~ 92 (216)
T 2lem_A 14 ANVYVDAVKDSGRDYVSQFES-SSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEV 92 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHH
Confidence 344555666667777655544 4566666 567788887776643221 1 12233333444455556666666666
Q ss_pred HHHHHHHHHH
Q 005005 405 HSYVQLYQES 414 (720)
Q Consensus 405 ~~~~~~~~~~ 414 (720)
...+.-|.+.
T Consensus 93 r~~l~py~~e 102 (216)
T 2lem_A 93 KQKVQPYLDE 102 (216)
T ss_dssp HHHTTTTCCH
T ss_pred HHhhhHHHHH
Confidence 6655555443
No 295
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.14 E-value=2e+02 Score=24.47 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHH
Q 005005 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMK 391 (720)
Q Consensus 353 ~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (720)
++++.++..||+.|..+...- ...++.|.++|.-|++
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~--~~ql~EYq~LlniKl~ 44 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARM--QQQLDEYQELLDIKLA 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 445555555555555443221 1124445555555544
No 296
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=24.10 E-value=73 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=26.3
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
+||+++| |||-+-+-.++.++|++.|+.|.++...
T Consensus 6 ~~k~vlV---------TGas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 6 FVRHALI---------TAGTKGLGKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCCEEEE---------TTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCEEEE---------eCCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence 3566666 4666666678899999999999887543
No 297
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.10 E-value=4e+02 Score=24.01 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=21.5
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 005005 393 LEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (720)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (720)
||.+++.--+||.-.=++|++.|++.|..
T Consensus 88 LE~~iesL~eEl~FLKk~heeEl~eLq~q 116 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677777778888888887753
No 298
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=23.95 E-value=77 Score=31.43 Aligned_cols=28 Identities=25% Similarity=0.012 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 15 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 15 TGHTGFKGGWLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ECCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 4666767778889999999999998643
No 299
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.86 E-value=44 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 530 LGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 530 LGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.|.+-..+.+.|.+.|++|.++-..
T Consensus 14 ~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 14 SEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3788889999999999999998764
No 300
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=23.85 E-value=72 Score=30.96 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|.|.+-+.+.+.|.+.|++|.++-+.
T Consensus 7 G~G~~G~~~a~~l~~~g~~V~~~~~~ 32 (279)
T 2f1k_A 7 GLGLIGASLAGDLRRRGHYLIGVSRQ 32 (279)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 46778888999999999999887653
No 301
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.84 E-value=4.4e+02 Score=24.56 Aligned_cols=20 Identities=20% Similarity=0.635 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 005005 323 DLYEKVENLQGLLAKATKQA 342 (720)
Q Consensus 323 ~~~~~~~~l~~~l~~~~~~~ 342 (720)
+|+++|+.++..|++....+
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v 59 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNV 59 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47777877777777654443
No 302
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=23.78 E-value=56 Score=31.60 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 528 GGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
||-|-+-..+.++|.+.|++|+++...
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 11 GGTGYIGKRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp STTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred cCCcHHHHHHHHHHHhCCCcEEEEECC
Confidence 555555567778999999999998764
No 303
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=23.71 E-value=68 Score=32.29 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=24.5
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||++| |.|-+-+.+...|++.|++|+++.+.
T Consensus 3 mkI~Ii-----------GaGaiG~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVI-----------GTGAIGSFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp CEEEEE-----------SCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred CEEEEE-----------CcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 788877 34445566777899999999999874
No 304
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.66 E-value=26 Score=28.07 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=21.6
Q ss_pred cchhhHhhhhhhhhhhcchhHHHHHHHHhh
Q 005005 245 IHSFSKELDSLKTENLSLKNDIKVLKAELN 274 (720)
Q Consensus 245 ~~~~~~~~~~~~~en~~~k~~~~~~k~~~~ 274 (720)
+..|..+...|..||..|+..+..|+.++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777788888888888887776553
No 305
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=23.57 E-value=1.1e+02 Score=31.09 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 35 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 62 (379)
T 2c5a_A 35 TGAGGFIASHIARRLKHEGHYVIASDWK 62 (379)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ECCccHHHHHHHHHHHHCCCeEEEEECC
Confidence 4666666678888999999999998654
No 306
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=23.56 E-value=67 Score=34.41 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
-.++||+|| |-++.|+.++..+++..|.+|+++.|.
T Consensus 151 l~glkva~v----------GD~~rva~Sl~~~~~~~G~~v~~~~P~ 186 (355)
T 4a8p_A 151 LEDCKVVFV----------GDATQVCFSLGLITTKMGMNFVHFGPE 186 (355)
T ss_dssp GGGCEEEEE----------SCCCHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCCCEEEEE----------CCCchhHHHHHHHHHHcCCEEEEECCC
Confidence 456788876 444899999999999999999999996
No 307
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=23.35 E-value=43 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=21.6
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 005005 280 DERVVMLEMERSSLESSLKELESKLSISQE 309 (720)
Q Consensus 280 ~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~ 309 (720)
=+|++.+|.+-+.||..|.+++.++..+|+
T Consensus 41 ldRlA~lEqdE~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 41 LGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999988775
No 308
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=23.34 E-value=71 Score=29.78 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEE
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VI 551 (720)
|||-|-+-..+.++|++.|+.|.++
T Consensus 7 TGasggiG~~~a~~l~~~G~~v~~~ 31 (245)
T 2ph3_A 7 TGASRGIGRAIALRLAEDGFALAIH 31 (245)
T ss_dssp TTTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEE
Confidence 5777777778889999999999887
No 309
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.33 E-value=3.3e+02 Score=24.39 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=21.0
Q ss_pred hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 005005 276 VKDADERVVMLEMERSSLESSLKELESKLSISQ 308 (720)
Q Consensus 276 ~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~ 308 (720)
-+++.+.+......++-++...++|+.++...+
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666543
No 310
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=23.24 E-value=71 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-|-+-..|.++|.+.|++|+++...
T Consensus 30 tGatG~iG~~l~~~L~~~g~~V~~~~r~ 57 (375)
T 1t2a_A 30 TGITGQDGSYLAEFLLEKGYEVHGIVRR 57 (375)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 4666667778889999999999998653
No 311
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=23.18 E-value=82 Score=30.27 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 531 GDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 531 GDVVgsLPKALa~lGhEV~VILPkY 555 (720)
|-+-..|.++|.+.|++|+++...-
T Consensus 12 G~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 12 GDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5555677889999999999997653
No 312
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=23.17 E-value=63 Score=32.78 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=25.5
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.|||++| |.|-+-+.+...|++.|++|+++.+.
T Consensus 3 ~mkI~Ii-----------GaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIV-----------GAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEE-----------SCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEE-----------CcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 4788877 44556677788999999999999863
No 313
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=23.13 E-value=5.3e+02 Score=25.11 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=25.7
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHh-hhh-hhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAEL-NSV-KDADERVVMLEMERSSLESSLKELESKLS 305 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~-~~~-~~~~~~~~~~~~e~~~l~~~~~~~e~~~~ 305 (720)
++..-+..+..|...+=+.-..+-..| ..| .....+....++.|.........++..+.
T Consensus 73 t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~ 133 (305)
T 2efl_A 73 TSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIE 133 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566655544444444444444 222 22233333344444444444444444443
No 314
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.05 E-value=5e+02 Score=24.83 Aligned_cols=72 Identities=22% Similarity=0.437 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhch
Q 005005 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (720)
Q Consensus 324 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (720)
-++.|..++.=|++|..+++.|-. ...+|...++-.-..|+. -..|.++-.+-.+....+||.|.++|....
T Consensus 19 KyeEvaR~E~dLEraEERae~aE~---k~~eLEeeL~~v~~nlKs---LE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 19 LENEVARLKKLLERAEERAELSEG---KSAELEEELKTVTNNLKS---LEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677888888888777622 222233222222222221 112233333334455555666665555444
No 315
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=22.99 E-value=2.4e+02 Score=30.44 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=12.2
Q ss_pred hhHhhhHHHHHHHHHHhhhc
Q 005005 197 IHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~ 216 (720)
+..+-+++.++.|..+|+..
T Consensus 25 ~~l~~~~~r~~el~~~~~~p 44 (365)
T 1gqe_A 25 LDYDAKKERLEEVNAELEQP 44 (365)
T ss_dssp TTHHHHHHHHHHHHHHHHSG
T ss_pred cCHHHHHHHHHHHHHHhcCC
Confidence 44455666667776666653
No 316
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=22.93 E-value=37 Score=33.08 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=21.9
Q ss_pred CceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEe
Q 005005 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 511 ~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VIL 552 (720)
+|+|.+| |+|.+-..+.+.|.+.||+|.++-
T Consensus 3 ~m~i~ii-----------G~G~~G~~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 3 AMKLGFI-----------GLGIMGSPMAINLARAGHQLHVTT 33 (295)
T ss_dssp -CEEEEC-----------CCSTTHHHHHHHHHHTTCEEEECC
T ss_pred CCEEEEE-----------ccCHHHHHHHHHHHhCCCEEEEEc
Confidence 4677665 455566677788889999997664
No 317
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=22.90 E-value=1e+02 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=22.4
Q ss_pred cCCHHH-HHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGD-VVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGD-VVgsLPKALa~lGhEV~VILPk 554 (720)
|||.|- .+-.|-+.|.+.|++|+||+-.
T Consensus 9 TGs~aa~k~~~l~~~L~~~g~~V~vv~T~ 37 (189)
T 2ejb_A 9 TGASGVIYGIKLLQVLEELDFSVDLVISR 37 (189)
T ss_dssp CSSTTHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred ECHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 677663 4677889999999999999754
No 318
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=22.82 E-value=8.8e+02 Score=27.55 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=12.1
Q ss_pred HHhhhhhhHHHhhhhchhhh
Q 005005 169 EALQGEINALEMRLAETDAR 188 (720)
Q Consensus 169 ~~lq~~~~~l~~~l~e~~~~ 188 (720)
...+.+...++.-|.+....
T Consensus 373 ~~F~~~~~~~~~Wl~~~e~~ 392 (863)
T 1sjj_A 373 EKFRQKASIHESWTDGKEAM 392 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666554
No 319
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.79 E-value=1.7e+02 Score=26.67 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=18.1
Q ss_pred hHhhhhhhhhhhcchhHHHHHHHHhhh
Q 005005 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (720)
Q Consensus 249 ~~~~~~~~~en~~~k~~~~~~k~~~~~ 275 (720)
..++..+|-....|+.++..|+.+|..
T Consensus 57 ~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 57 NKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777766654
No 320
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=22.66 E-value=63 Score=32.28 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHHHC-CCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKK-GHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~l-GhEV~VILPk 554 (720)
|||-|-+-..|.++|.+. |++|+++...
T Consensus 30 tGatG~iG~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 30 LGVNGFIGHHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp ESCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred ECCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence 477777778889999998 9999999754
No 321
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.49 E-value=1.4e+02 Score=32.22 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhc
Q 005005 146 NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (720)
Q Consensus 146 ~i~~l~~~r~~a~~~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (720)
.|+-|.+.|.....+++.+.+++.++.++|..+...=.+.++-+.-+.+-+-.+.-+|+++..+..++...
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888888888888888888876543322333333334444555566777777777766553
No 322
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=22.45 E-value=72 Score=31.65 Aligned_cols=29 Identities=38% Similarity=0.575 Sum_probs=22.0
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEE
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VI 551 (720)
|||++|. ||.+=.+ ++-+|++.|++|+|+
T Consensus 2 m~V~IVG---------aGpaGl~--~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 2 MHVGIIG---------AGIGGTC--LAHGLRKHGIKVTIY 30 (412)
T ss_dssp CEEEEEC---------CSHHHHH--HHHHHHHTTCEEEEE
T ss_pred CEEEEEC---------cCHHHHH--HHHHHHhCCCCEEEE
Confidence 8999886 4544444 345789999999999
No 323
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.26 E-value=4.3e+02 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=26.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHH--HHHHHHHHHHH
Q 005005 345 AISVLQQNQELRKKVDKLEESLDEANIYKLSSEK--MQQYNELMQQK 389 (720)
Q Consensus 345 ~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~ 389 (720)
....-.+|+.|+...++|.+.|++-+-.|...|. ++++..+|-+|
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeK 187 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEK 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334556777777777777777776665554432 34444455443
No 324
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.25 E-value=44 Score=24.35 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=13.2
Q ss_pred chhhHhhhhhhhhhhcchhHHHHHHH
Q 005005 246 HSFSKELDSLKTENLSLKNDIKVLKA 271 (720)
Q Consensus 246 ~~~~~~~~~~~~en~~~k~~~~~~k~ 271 (720)
-.|.+|+..||.|-..||=.|.+||+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555555543
No 325
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.03 E-value=1.6e+02 Score=31.86 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHhhhcccC
Q 005005 200 ELLEDQLQKLQHELTHRGVS 219 (720)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~ 219 (720)
.++-+..+.++.-|..|+.+
T Consensus 5 ~~~r~~~~~~~~~~~~r~~~ 24 (421)
T 1ses_A 5 KRLRQEPEVFHRAIREKGVA 24 (421)
T ss_dssp HHHHHCHHHHHHHHHHHTCC
T ss_pred HHHHhCHHHHHHHHHHhCCC
Confidence 44555677777777777654
No 326
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.01 E-value=1.2e+02 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=35.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED 310 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~~~ 310 (720)
+|.-+++||.+..+. .+++..+|+||..-=+.|++.|--...+..+
T Consensus 7 iKkkmqaLk~Ekdna---~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e 52 (75)
T 3mtu_A 7 IKKKMQMLKLDKENA---LDRAEQAEADKDFYFGKLRNIELICQENEGE 52 (75)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 455667777766554 4577789999999999999999887766543
No 327
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=21.97 E-value=68 Score=30.83 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=25.2
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|||.+| |+|.+-..+.+.|.+.|++|.++-+.
T Consensus 2 ~~m~i~ii-----------G~G~mG~~~a~~l~~~g~~v~~~~~~ 35 (259)
T 2ahr_A 2 NAMKIGII-----------GVGKMASAIIKGLKQTPHELIISGSS 35 (259)
T ss_dssp -CCEEEEE-----------CCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred CccEEEEE-----------CCCHHHHHHHHHHHhCCCeEEEECCC
Confidence 34777776 46667778888999999998887653
No 328
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=21.88 E-value=5.2e+02 Score=24.55 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=59.8
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH----HHHHHHHHHHH--hh-hhh--h---HHHHhhhhHH
Q 005005 287 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK----VENLQGLLAKA--TK-QAD--Q---AISVLQQNQE 354 (720)
Q Consensus 287 ~~e~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~--~~-~~~--~---~~~~~~~~~~ 354 (720)
=++|+-|...+.+|++++... .-|-+=.+--.+-..|.+. ...|..|..++ || .+. . =...|..-..
T Consensus 10 L~lRadl~kri~qL~~ri~~n-~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~ 88 (154)
T 3kdq_A 10 LAQRVEAQRRYSELNQLLLDV-AKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDA 88 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 367888888888888877543 1111111111112233333 33344444332 22 111 0 1134566778
Q ss_pred HHHHHHHHHHHHhHhhhhh----------hchHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 355 LRKKVDKLEESLDEANIYK----------LSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 355 l~~~~d~l~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
|+.++..+..-...|.... ++.-+. .-+|.++..++.++++-|-.|++
T Consensus 89 L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv----~~~qk~ad~l~k~~r~Ld~~IQ~ 146 (154)
T 3kdq_A 89 LLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDA----REIRKKADLAAKEYRQLDVDIQR 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccchhhhhheeccCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877432 222222 34555666666666665555554
No 329
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.88 E-value=3.1e+02 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=24.5
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 005005 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQ 308 (720)
Q Consensus 262 ~k~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~e~~~~~~~ 308 (720)
+..++..=+++|..+.+ |.+.++.|+..+.+||..+..++
T Consensus 49 ~qsele~k~aeLe~lee-------L~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLEE-------LSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHH
Confidence 44666666777776633 55556666666666666665544
No 330
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=21.87 E-value=38 Score=32.46 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecCCCcc
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPkY~~I 558 (720)
|||-|-+-..|.++|.+.|++|+++......+
T Consensus 11 tGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~ 42 (287)
T 3sc6_A 11 TGANGQLGKQLQEELNPEEYDIYPFDKKLLDI 42 (287)
T ss_dssp ESTTSHHHHHHHHHSCTTTEEEEEECTTTSCT
T ss_pred ECCCCHHHHHHHHHHHhCCCEEEEecccccCC
Confidence 47777777788899999999999998754433
No 331
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=21.85 E-value=69 Score=33.56 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
-.++||++|+ -++.|+.++..+++..|.+|+++.|.
T Consensus 152 l~glkva~vG----------D~~~va~Sl~~~~~~~G~~v~~~~P~ 187 (309)
T 4f2g_A 152 IRGKTVAWVG----------DANNMLYTWIQAARILDFKLQLSTPP 187 (309)
T ss_dssp CTTCEEEEES----------CCCHHHHHHHHHHHHHTCEEEEECCG
T ss_pred CCCCEEEEEC----------CCcchHHHHHHHHHHcCCEEEEECCc
Confidence 4678888874 34789999999999999999999996
No 332
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=21.85 E-value=64 Score=33.69 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY 555 (720)
-.+++|++| |-++.|+.++..+++..|.+|+++.|.-
T Consensus 152 l~gl~ia~v----------GD~~rva~Sl~~~~~~~g~~v~~~~P~~ 188 (301)
T 2ef0_A 152 LAGLEVAWV----------GDGNNVLNSLLEVAPLAGLKVRVATPKG 188 (301)
T ss_dssp CTTCEEEEE----------SCCCHHHHHHHHHHHHHTCEEEEECCTT
T ss_pred cCCcEEEEE----------CCCchhHHHHHHHHHHcCCEEEEECCch
Confidence 457888885 4458999999999999999999999963
No 333
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=21.80 E-value=1.2e+02 Score=28.24 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
.+|||+.|.. .| .|--..++..+.+.+.+.|++|.++-.
T Consensus 5 ~mmkilii~~--S~---~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 5 APVKLAIVFY--SS---TGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp CCCEEEEEEC--CS---SSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEEE--CC---CChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4689998865 34 677888999999999999999998843
No 334
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=21.72 E-value=1.3e+02 Score=30.00 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=33.1
Q ss_pred HHHHhhhhccCCCCCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 495 EAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 495 e~~~~~~~~~~~~k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
.+-+.+++|+ .+.|+.+||++--.- -|--.|+.+|.++|+++|..|..+=|
T Consensus 13 ~~~~~~~~~~----~~~m~~i~Itgt~t~----vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 13 GLQGTENLYF----QSHMTILVVTGTGTG----VGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp ---------C----CSSCEEEEEEESSTT----SCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhHHHHHhc----ccCCCEEEEEeCCCC----CcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3445555555 356999999874222 25667999999999999999998865
No 335
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.65 E-value=1.5e+02 Score=25.12 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 005005 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEF 418 (720)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (720)
+...+.+|..+..+|..++....+|..|++=||..+.-+
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniK 42 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577889999999999999999999999998766443
No 336
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=21.62 E-value=68 Score=33.50 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 510 ~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
.+|||.+| |.|-+-+++...|++.||+|+++.+.
T Consensus 28 ~~mkI~VI-----------GaG~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 28 FKHPIAIL-----------GAGSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCSCEEEE-----------CCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred cCCeEEEE-----------CccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45788877 45677788889999999999998764
No 337
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=21.60 E-value=93 Score=32.49 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=31.5
Q ss_pred CCCceEEEEecccCCccccCCH-HHHHHHHHHHHHHCCCeEEEEecCC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIVLPKY 555 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGL-GDVVgsLPKALa~lGhEV~VILPkY 555 (720)
-.+++|++| |-+ ..|+.++..+++..|.+|+++.|.-
T Consensus 146 l~gl~va~v----------GD~~~rva~Sl~~~~~~~g~~v~~~~P~~ 183 (307)
T 2i6u_A 146 LRGLRLSYF----------GDGANNMAHSLLLGGVTAGIHVTVAAPEG 183 (307)
T ss_dssp CTTCEEEEE----------SCTTSHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cCCeEEEEE----------CCCCcCcHHHHHHHHHHCCCEEEEECCcc
Confidence 457888886 444 6999999999999999999999963
No 338
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=21.52 E-value=72 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHCC-CeEEEEecC
Q 005005 529 GLGDVVAGLGKALQKKG-HLVEIVLPK 554 (720)
Q Consensus 529 GLGDVVgsLPKALa~lG-hEV~VILPk 554 (720)
|+|.+-+.+...|.+.| ++|.++-+.
T Consensus 7 G~G~mG~~~a~~l~~~g~~~v~~~~r~ 33 (263)
T 1yqg_A 7 GGGNMAAAVAGGLVKQGGYRIYIANRG 33 (263)
T ss_dssp CCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred CchHHHHHHHHHHHHCCCCeEEEECCC
Confidence 46777788889999999 999888654
No 339
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=21.49 E-value=1.1e+02 Score=31.36 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCCceEEEEecccCCccccCCH-HHHHHHHHHHHHHCCCeEEEE
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIV 551 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGL-GDVVgsLPKALa~lGhEV~VI 551 (720)
-.+||||+|.+- |- .+++ +.++...-++|.+.||+|+|+
T Consensus 20 m~~MKiLII~aH--P~--~~S~n~aL~~~~~~~l~~~G~eV~v~ 59 (280)
T 4gi5_A 20 FQSMKVLLIYAH--PE--PRSLNGALKNFAIRHLQQAGHEVQVS 59 (280)
T ss_dssp --CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhCCeEEEEEeC--CC--CccHHHHHHHHHHHHHHHCCCeEEEE
Confidence 366999999764 53 2343 345556667889999999998
No 340
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=21.47 E-value=84 Score=32.83 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCCceEEEEecccCCccccCCH--HHHHHHHHHHHHHC-CCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGL--GDVVAGLGKALQKK-GHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGL--GDVVgsLPKALa~l-GhEV~VILPk 554 (720)
-.++||++| |-+ +.|+.++..+++.. |.+|+++.|.
T Consensus 149 l~glkva~v----------GD~~~~rva~Sl~~~~~~~~G~~v~~~~P~ 187 (306)
T 4ekn_B 149 IDGIKIAFV----------GDLKYGRTVHSLVYALSLFENVEMYFVSPK 187 (306)
T ss_dssp STTCEEEEE----------SCTTTCHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred cCCCEEEEE----------cCCCCCcHHHHHHHHHHhcCCCEEEEECCc
Confidence 457888877 444 68999999999999 9999999996
No 341
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.41 E-value=4.1e+02 Score=23.14 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.8
Q ss_pred hhHHHHHHHHhh
Q 005005 263 KNDIKVLKAELN 274 (720)
Q Consensus 263 k~~~~~~k~~~~ 274 (720)
|.-|++||.+..
T Consensus 8 KkKm~~lk~e~e 19 (101)
T 3u59_A 8 KKKMQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 342
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=21.26 E-value=72 Score=31.35 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEec
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLP 553 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILP 553 (720)
|||-|-+-..|.++|.+.|++|+++..
T Consensus 8 tGatG~iG~~l~~~L~~~g~~V~~~~r 34 (348)
T 1ek6_A 8 TGGAGYIGSHTVLELLEAGYLPVVIDN 34 (348)
T ss_dssp ETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence 466666667888999999999999853
No 343
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=21.03 E-value=1.3e+02 Score=31.31 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCCceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 508 k~~~MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
..++|+|+++.+ | .....+.+++.++|++|.++.+.
T Consensus 16 ~~~~~~ili~g~--------g---~~g~~~~~a~~~~G~~v~~v~~~ 51 (433)
T 2dwc_A 16 TDSAQKILLLGS--------G---ELGKEIAIEAQRLGVEVVAVDRY 51 (433)
T ss_dssp STTCCEEEEESC--------S---HHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEECC--------C---HHHHHHHHHHHHCCCEEEEEECC
Confidence 345678988842 3 34556788999999999998764
No 344
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=21.00 E-value=84 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lGhEV~VILPk 554 (720)
|||-+-+-.++.+.|++.|+.|.++...
T Consensus 8 TGas~gIG~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 8 TGASRGIGEAIARALARDGYALALGARS 35 (235)
T ss_dssp ESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3555555578889999999998887654
No 345
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.93 E-value=8.1e+02 Score=26.42 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=14.8
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAEL 273 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~ 273 (720)
++..-++.++.|...+-+.-..+-..|
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L 104 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASL 104 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555555444444444
No 346
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.84 E-value=3.8e+02 Score=29.28 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHH
Q 005005 381 QYNELMQQKMKLLEERLQRSDEEIHS 406 (720)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (720)
.....+.+++|.+|+.+....++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666655554443
No 347
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=20.84 E-value=1.3e+02 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred CCCCCceEEEEecccCCccccCCHH--HHHHHHHHHHHHCCCeEEEEe
Q 005005 507 SISSGLHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIVL 552 (720)
Q Consensus 507 ~k~~~MKILfVSSE~aPfAKVGGLG--DVVgsLPKALa~lGhEV~VIL 552 (720)
...++|+|+-|++- .||.| .++..|+.+|+++|..|-+|=
T Consensus 138 ~~~~~~kvIav~s~------KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 138 GENDKSSVVIFTSP------CGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp CCTTSCEEEEEECS------STTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccCCCceEEEEECC------CCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34567888888752 47776 678889999999999999884
No 348
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.80 E-value=4.9e+02 Score=23.89 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhchHHHHHHHHHHHHHHHHHHHHHh--hchhh-HHHHHHHH
Q 005005 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ--RSDEE-IHSYVQLY 411 (720)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~ 411 (720)
+++.+.+...|=-.|.. -++.+|+|++.++. -+-..|.| ..|++++.-.++.|. ++|+| +++-.+-|
T Consensus 26 i~~L~~~L~~AEeaL~~---Kq~~idelk~ei~q---~~~~lE~I----~vLkaQv~IY~~DF~aERadREkl~~eKe~L 95 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVA---KQELIDKLKEEAEQ---HKIVMETV----PVLKAQADIYKADFQAERHAREKLVEKKEYL 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHccchhhHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHhhH
Q 005005 412 QESVKEFQDTLHSLK 426 (720)
Q Consensus 412 ~~~~~~~~~~l~~~~ 426 (720)
+..+...|.-++.|+
T Consensus 96 ~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 96 QEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
No 349
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=20.68 E-value=1e+02 Score=31.08 Aligned_cols=28 Identities=39% Similarity=0.399 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHHHCC-CeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQKKG-HLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~lG-hEV~VILPk 554 (720)
|||-|-+-..|.++|.+.| ++|+++...
T Consensus 38 tGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (377)
T 2q1s_A 38 VGGAGFVGSNLVKRLLELGVNQVHVVDNL 66 (377)
T ss_dssp ETTTSHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred ECCccHHHHHHHHHHHHcCCceEEEEECC
Confidence 4676777788889999999 999998654
No 350
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=20.64 E-value=98 Score=29.05 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHH-CCCeEEEEecC
Q 005005 527 VGGLGDVVAGLGKALQK-KGHLVEIVLPK 554 (720)
Q Consensus 527 VGGLGDVVgsLPKALa~-lGhEV~VILPk 554 (720)
|||-|-+-..+.+.|++ .|+.|.++...
T Consensus 10 TGasggIG~~~a~~L~~~~g~~V~~~~r~ 38 (276)
T 1wma_A 10 TGGNKGIGLAIVRDLCRLFSGDVVLTARD 38 (276)
T ss_dssp SSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred eCCCcHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 46666666788899999 99999888653
No 351
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=20.61 E-value=8.5e+02 Score=26.56 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhc---cCCCCCCCCHHHHH
Q 005005 406 SYVQLYQESVKEFQDTLHSLKEESKKRA---VHEPVDDMPWEFWS 447 (720)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~ws 447 (720)
++...|..-+..++..|+++-++..++- ..+--+=+|.++|.
T Consensus 350 ~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~G~yLP~diwp 394 (413)
T 4hpq_C 350 ETAAKLSQILKSCETQLEQINTADLRERQMFLLENGNYLPETIWP 394 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhCC
Confidence 3556677778888888888877654421 23444557888886
No 352
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.52 E-value=1.1e+02 Score=30.54 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhHhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhh
Q 005005 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVF 227 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
.|+.--.|.++||.++..|+......+-++ +++..++++.+|=++-| -+|.-+++-+..+..+|
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~---~~~~e~i~i~~DL~e~L-TGl~V~~~~ed~~~~~F 98 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQVKELKTQT---SQQAENSEVIKDLYEYL-CNVRVHKSYEDDSGLWF 98 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HSEECCCCCCCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHH---HHHHHhhhHHHHHHHHc-cCcEEEEEEEcCCCeEE
Confidence 455666788888888888888887766665 47888999999999988 56776666665555544
No 353
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.45 E-value=2.6e+02 Score=22.91 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=27.1
Q ss_pred hHH-HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 005005 323 DLY-EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (720)
Q Consensus 323 ~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~ 367 (720)
.|| .|++.|+....+ +.+..-..=..-.+|++.|..|+.-|+
T Consensus 31 ~~y~~k~eel~~~~~~---~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 31 EWYKSKFADLSEAANR---NNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565 677777765554 444433344556788888888887664
No 354
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.44 E-value=2.4e+02 Score=28.46 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHhhhhhhchHH
Q 005005 356 RKKVDKLEESLDEANIYKLSSEK 378 (720)
Q Consensus 356 ~~~~d~l~~~l~~~~~~~~~~~~ 378 (720)
++..++++..++...+++-..+.
T Consensus 97 ~~~~~r~~~L~~~~~~s~~~~~~ 119 (369)
T 4dk0_A 97 LSNYQRLSKLYGQKATSLDTLNT 119 (369)
T ss_dssp TTTHHHHHHGGGSSCSCGGGHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHH
Confidence 34445556666666666554443
No 355
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.44 E-value=3.8e+02 Score=24.91 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 005005 385 LMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (720)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (720)
-|+.++.....++.. ...+.-|=.-|.+.+++|++.+.+|..+-++
T Consensus 48 ~m~~~i~ek~~~i~~-~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~ 93 (119)
T 2avr_X 48 QVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655 7778888899999999999999999888766
No 356
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.41 E-value=2.1e+02 Score=30.41 Aligned_cols=89 Identities=27% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhHh
Q 005005 290 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (720)
Q Consensus 290 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l~~~ 369 (720)
...|.+.|..++..|..++.++.+ --+.|+.|+..+.+...-.+.-.-| ++-.+...|++.+-.-
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~----------k~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~e~~~~~ 368 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFR----------RQEMVTQLQQELRNEEENTHPRERV-----QLLGKRQVLQEALQGL 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHSCTTCGG-----GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCCcchHH-----HHHhHHhhHHHHHHHH
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHH
Q 005005 370 NIYKLSSEKMQQYNELMQQKMKLL 393 (720)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~ 393 (720)
....-+-.+++.-.++|++++..+
T Consensus 369 ~~~~~~~~~~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 369 QVALCSQAKLQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhc
No 357
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=20.39 E-value=91 Score=32.61 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=30.6
Q ss_pred CCCceEEEEecccCCccccCCH-HHHHHHHHHHHHHCCCeEEEEecC
Q 005005 509 SSGLHVIHIAAEMAPVAKVGGL-GDVVAGLGKALQKKGHLVEIVLPK 554 (720)
Q Consensus 509 ~~~MKILfVSSE~aPfAKVGGL-GDVVgsLPKALa~lGhEV~VILPk 554 (720)
-.++||++|.- |. +.|+.++..+++..|.+|+++.|.
T Consensus 145 l~glkva~vGD---------~~~~rva~Sl~~~~~~~G~~v~~~~P~ 182 (304)
T 3r7f_A 145 FKGLTVSIHGD---------IKHSRVARSNAEVLTRLGARVLFSGPS 182 (304)
T ss_dssp CTTCEEEEESC---------CTTCHHHHHHHHHHHHTTCEEEEESCG
T ss_pred CCCCEEEEEcC---------CCCcchHHHHHHHHHHcCCEEEEECCC
Confidence 45788988732 22 589999999999999999999996
No 358
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=20.31 E-value=1.1e+02 Score=30.30 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=26.1
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHH--HHHHHC--CCeEEEEecC
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLG--KALQKK--GHLVEIVLPK 554 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLP--KALa~l--GhEV~VILPk 554 (720)
||||+| +.+++||++..+| ++|++. +.++++++..
T Consensus 1 ~~ILii--------~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 39 (326)
T 2gt1_A 1 MRVLIV--------KTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEE 39 (326)
T ss_dssp CEEEEE--------CCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEG
T ss_pred CeEEEE--------eccccchHHhHHHHHHHHHHhCCCCEEEEEEeh
Confidence 788877 4589999966654 577776 7888888654
No 359
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=20.30 E-value=87 Score=33.09 Aligned_cols=40 Identities=8% Similarity=-0.075 Sum_probs=23.7
Q ss_pred HHHHHhcCCCCcEEEECchhhhhH-HHHHHHhhCcCCCCCCCEEEEecCC
Q 005005 631 LELLLQAGKQPDIIHCHDWQTAFV-APLYWDLYVPKGLNSARVCFTCHNF 679 (720)
Q Consensus 631 LElL~klg~kPDIIHcHDWHTALV-aPLyLk~y~~~gf~~iptVFTIHNL 679 (720)
..++++ .+|||||+|+.|+... .+.+.. ...|++.|+|+.
T Consensus 275 ~~~i~~--~~~Div~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 315 (568)
T 2vsy_A 275 AKHIRH--HGIDLLFDLRGWGGGGRPEVFAL-------RPAPVQVNWLAY 315 (568)
T ss_dssp HHHHHH--TTCSEEEECSSCTTCSSCHHHHT-------CCSSEEEEESSS
T ss_pred HHHHHh--CCCCEEEECCCCCCcchHHHHhc-------CCCceeEeeecC
Confidence 344543 5899999998876321 122211 236788888754
No 360
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.29 E-value=61 Score=26.44 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=21.3
Q ss_pred hhhHhhhhhhhhhhcchhHHHHHHHHhhhh
Q 005005 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (720)
Q Consensus 247 ~~~~~~~~~~~en~~~k~~~~~~k~~~~~~ 276 (720)
.|..+...|+.+|..|+..|..|+.++...
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888877777776665443
No 361
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=20.15 E-value=5.9e+02 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.317 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 005005 155 VQALEDLHKILQEKEALQGE 174 (720)
Q Consensus 155 ~~a~~~~~~~~~ek~~lq~~ 174 (720)
...++++.+.+.|+-++..+
T Consensus 31 ~~~~~el~~f~~eRa~iE~e 50 (276)
T 2v0o_A 31 QISTKELADFVRERATIEEA 50 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46678888888887665543
No 362
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.13 E-value=85 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchh
Q 005005 160 DLHKILQEKEALQGEINALEMRLAETD 186 (720)
Q Consensus 160 ~~~~~~~ek~~lq~~~~~l~~~l~e~~ 186 (720)
.++..+.+|.+|+.+++.|..-|.++.
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 478889999999999999988887764
No 363
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=20.04 E-value=73 Score=34.59 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=29.6
Q ss_pred ceEEEEecccCCccccCCHHHHHHHHHHHHHHCCCeEEEEecCCCc
Q 005005 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (720)
Q Consensus 512 MKILfVSSE~aPfAKVGGLGDVVgsLPKALa~lGhEV~VILPkY~~ 557 (720)
++|+.+ |.|.+...+.+.|.+.|++|.||-.....
T Consensus 349 ~~viIi-----------G~G~~G~~la~~L~~~g~~v~vid~d~~~ 383 (565)
T 4gx0_A 349 ELIFII-----------GHGRIGCAAAAFLDRKPVPFILIDRQESP 383 (565)
T ss_dssp CCEEEE-----------CCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred CCEEEE-----------CCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence 777766 66999999999999999999999876543
No 364
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.01 E-value=1.8e+02 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhchhhH
Q 005005 385 LMQQKMKLLEERLQRSDEEI 404 (720)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~ 404 (720)
.|+.++..|.+.+...|+=|
T Consensus 69 ~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 69 ILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 365
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.01 E-value=4.5e+02 Score=23.11 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=24.8
Q ss_pred hHHHHHH-HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 005005 323 DLYEKVE-NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (720)
Q Consensus 323 ~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~d~l~~~l 366 (720)
..|+.|. .=|..|.. +|++|.+|++.|+.|++-+
T Consensus 28 ~YWk~lAE~RR~AL~e----------aL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 28 QYWKEVAEKRRKALYE----------ALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 4677654 44444544 7999999999999988765
Done!