BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005006
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 47 MSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPR 106
++QE K +GN+ F+K D+ AM Y +A+K P+N I L SN A C + L EF R
Sbjct: 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----LYSNRAACLTK--LMEFQR 65
Query: 107 AINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALE 160
A+++C+ + + SK+ K +++A C A+ A R + L ++P+N A E
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFP 105
S ++L++EGN+LF+ D+ GA+ Y +AL L D A L N A C+++ L ++
Sbjct: 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLK--LEDYD 82
Query: 106 RAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165
+A E + A+E KAL +R+Q + L RLD A D+ +S+EP N E L ++
Sbjct: 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 20/143 (13%)
Query: 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-----DVAYLRSNMAGCYMQM 99
+ ++ELK + N F+ +D+E A+ Y +A++L P N I +AYLR+ CY
Sbjct: 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CY-GY 65
Query: 100 GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA- 158
LG+ RAI E+ KY K +RA AL + A RD V+ ++P++ A
Sbjct: 66 ALGDATRAI-------ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118
Query: 159 ---LEVLESVKQSMIEKGIDIDE 178
E + VKQ E+ I DE
Sbjct: 119 MKYQECNKIVKQKAFERAIAGDE 141
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-----DVAYLRSNMAGCYMQMGLG 102
++ELK + N F+ +D+E A+ Y +A++L P N I +AYLR+ G LG
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----YALG 61
Query: 103 EFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA---- 158
+ RAI E+ KY K +RA AL + A RD V+ ++P++ A
Sbjct: 62 DATRAI-------ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114
Query: 159 LEVLESVKQSMIEKGIDIDE 178
E + VKQ E+ I DE
Sbjct: 115 QECNKIVKQKAFERAIAGDE 134
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-----DVAYLRSNMAGCYMQM 99
+ ++ELK + N F+ +D+E A+ Y +A++L P N I +AYLR+ CY
Sbjct: 18 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGY- 73
Query: 100 GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSA 158
A+N+ A+E+ KY K +RA AL + A RD V+ ++P++ A
Sbjct: 74 -------ALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 39 EDTAMFISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHI-----DVAYLRSNMA 93
+D + +S++LK GN F+ ++ E A+ KY K L+ + + D A L+
Sbjct: 214 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL 273
Query: 94 GCYMQMG-----LGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148
C + +G + ++ A++ C ALE+ +KAL +RAQ ++ L D A D+
Sbjct: 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333
Query: 149 LSMEPNNSSALEVLESVKQSM 169
+ P + + L VKQ +
Sbjct: 334 QEIAPEDKAIQAELLKVKQKI 354
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLP---------KNHIDVAYLRS--NMAGCYMQM 99
+KE G F++ ++ A+L+Y+K + L L S N+A C+++
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK- 208
Query: 100 GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSAL 159
L F AI CN ALE+ S K L +R + + A+N + A D VL + PNN +A
Sbjct: 209 -LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 160 EVLESVKQSMIEKGIDIDEKM 180
L +V Q I + + ++K+
Sbjct: 268 TQL-AVCQQRIRRQLAREKKL 287
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLP---------KNHIDVAYLRS--NMAGCYMQM 99
+KE G F++ ++ A+L+Y+K + L L S N+A C+++
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK- 208
Query: 100 GLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSAL 159
L F AI CN ALE+ S K L +R + + A+N + A D VL + PNN +A
Sbjct: 209 -LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 160 EVLESVKQSMIEKGIDIDEKM 180
L +V Q I + + ++K+
Sbjct: 268 TQL-AVCQQRIRRQLAREKKL 287
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P N A N+ Y + G ++ +AI A
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNN----ASAWYNLGNAYYKQG--DYQKAIEYYQKA 69
Query: 115 LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167
LE+ +KA +R Y A D L ++PNN+ A + L + KQ
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAIN 109
+LK GN F ++ A+ Y+ A++L P + SN++ CY+ G + + I
Sbjct: 23 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV----FYSNISACYISTG--DLEKVIE 76
Query: 110 ECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151
ALE+ +SKALL+RA ++L A D+ +VLS+
Sbjct: 77 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSL 117
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAIN 109
+LK GN F ++ A+ Y+ A++L P + SN++ CY+ G + + I
Sbjct: 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV----FYSNISACYISTG--DLEKVIE 80
Query: 110 ECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151
ALE+ +SKALL+RA ++L A D+ +VLS+
Sbjct: 81 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSL 121
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107
+QELKE+GN+LF R + A Y +A+ P VA +N A CY++M E +A
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPE--QA 57
Query: 108 INECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151
+ +C ALE+ + KA QC + D A ++ S+
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 15/134 (11%)
Query: 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINE 110
LK++GN+ F+ + ++ A+ Y AL+L V Y SN++ CY+ +G+ + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFY--SNLSACYV--SVGDLKKVVEM 61
Query: 111 CNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM--EPNNSSALEVLES--VK 166
ALE+ YSK LL+RA + L + A D+ +VLS+ + N++S +LE K
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLNK 120
Query: 167 QSMI---EKGIDID 177
Q+M EK DID
Sbjct: 121 QAMSKLKEKFGDID 134
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAIN 109
ELKE+GNK + + A+ Y +A+KL P NH+ L SN + Y + G++ +A
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV----LYSNRSAAYAKK--GDYQKAYE 59
Query: 110 ECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV 165
+ +++ + K ++A + LNR + A R L E NN E L+++
Sbjct: 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107
+QELKE+GN+LF R + A Y +A+ P VA +N A CY++M E +A
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPE--QA 62
Query: 108 INECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151
+ +C ALE+ + KA QC + D A ++ S+
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINE 110
+K +GN+ FQK D+ AM Y +A+K PK+ A L SN A CY + L EF A+ +
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTK--LLEFQLALKD 72
Query: 111 CNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQSMI 170
C +++ + K ++A +A+ A L ++ SS E + ++ M+
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD---SSCKEAADGYQRCMM 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 102 GEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPN------- 154
G++P+A+ A++ + K +K RA CY L A +D + +EP
Sbjct: 30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89
Query: 155 NSSALEVLESVKQSM--IEKGIDIDEKMKE 182
++ALE ++ ++M +K +D+D KE
Sbjct: 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKE 119
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P N A N+ Y + G ++ AI A
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQG--DYDEAIEYYQKA 69
Query: 115 LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167
LE+ ++A Y D A L ++PNN+ A + L + KQ
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 45 ISMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRS-------------N 91
I + K +GN LF++ E AM +YE A+ + + + Y + N
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLN 235
Query: 92 MAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151
+A C ++ L + AI CN+ L K KAL +R + L ++D A D
Sbjct: 236 IAACLIK--LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293
Query: 152 EPNNSS 157
P++ +
Sbjct: 294 APDDKA 299
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P N A N+ Y + G ++ AI A
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNN----AEAWYNLGNAYYKQG--DYDEAIEYYQKA 69
Query: 115 LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESVKQ 167
LE+ ++A Y D A L + PNN+ A + L + KQ
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQ 122
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107
++ LK EGN+ + + E A+ Y KA++L P N + Y N A Y + LG + A
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---YF-CNRAAAYSK--LGNYAGA 65
Query: 108 INECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSS 157
+ +C A+ + YSKA + +LN+ A L ++P+N +
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107
S +LK EGN ++++ A+ Y +AL + P N I YL SN A Y G E +A
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---YL-SNRAAAYSASGQHE--KA 64
Query: 108 INECNLALEVSSKYSKA 124
+ LA V KYSKA
Sbjct: 65 AEDAELATVVDPKYSKA 81
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 50 ELKEEGNKLFQKRDHEGAMLKYEKALKLL-------------PKNHIDVAYLRSNMAGCY 96
++KEEGN+ F+K + A++KY++AL K +I+++ N+A CY
Sbjct: 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS-CNLNLATCY 98
Query: 97 MQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNN 155
+ ++P+AI+ + L++ KAL K L+ A ++ S+ PNN
Sbjct: 99 NKN--KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 46 SMSQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFP 105
SM+ + K EGNK ++ R + A+ Y KA +L H D+ YL + A Y + GE+
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL----HKDITYLNNRAAAEYEK---GEYE 55
Query: 106 RAINECNLALE 116
AI+ N A+E
Sbjct: 56 TAISTLNDAVE 66
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107
++E + EG + F K D A+ Y + +K P++ A SN A + L FP A
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAK--LMSFPEA 192
Query: 108 INECNLALEVSSKYSKALLKRAQCYKALNRLDFAFR--DVNNVLSMEPNN-SSALEV 161
I +CN A+E + +A +++A A+ A D E NN SSA E+
Sbjct: 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 48 SQELKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRA 107
++E + EG + F K D A+ Y + +K P++ A SN A + L FP A
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAK--LMSFPEA 57
Query: 108 INECNLALEVSSKYSKALLKRAQCYKALNRLDFAFR--DVNNVLSMEPNN-SSALEV 161
I +CN A+E + +A +++A A+ A D E NN SSA E+
Sbjct: 58 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P++ A N+ Y + G++ AI A
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQ--GDYDEAIEYYQKA 61
Query: 115 LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEPNNSSALEVLESV--KQSMIEK 172
LE+ + ++A Y D A L ++P ++ A L + KQ ++
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 173 GIDIDEKMKE 182
I+ +K E
Sbjct: 122 AIEYYQKALE 131
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P++ A N+ Y + G ++ AI A
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQG--DYDEAIEYYQKA 95
Query: 115 LEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSMEP 153
LE+ + ++A Y D A L ++P
Sbjct: 96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 26/128 (20%)
Query: 51 LKEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLR-------------------SN 91
L+++GN+LF ++D++ A+ Y AL +D LR +N
Sbjct: 14 LRQKGNELFVQKDYKEAIDAYRDAL-----TRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 92 MAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNVLSM 151
M+ CY + +G+ A + L+ KAL +RA+ A +LD A D+ +L
Sbjct: 69 MSQCY--LNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126
Query: 152 EPNNSSAL 159
P +S +
Sbjct: 127 HPAAASVV 134
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINEC 111
KE GN ++K+D + A+ Y+KA +L P N + Y+ +N A Y + G++ + C
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYI-TNQAAVYFEK--GDYNKCRELC 61
Query: 112 NLALEV 117
A+EV
Sbjct: 62 EKAIEV 67
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINEC 111
KE GN ++K+D + A+ Y+KA +L P N + Y+ +N A Y + G++ + C
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYI-TNQAAVYFEK--GDYNKCRELC 61
Query: 112 NLALEV 117
A+EV
Sbjct: 62 EKAIEV 67
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINEC 111
KE+GN LF++ + A+ Y++ + P+N V Y MA + LGE+ +AI C
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMA----LIKLGEYTQAIQMC 61
Query: 112 NLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148
L +S ++ Y RL+ A V +V
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQY----RLELAQGAVGSV 94
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 640 EVAVEKFELAGASPTDIAVMIKNHCSNETALEGFGFKIDEIVQAWNEMYDAKRWQIGVPS 699
EVA+ + ++AGASPTD V + N C N ++ G + W + D W+
Sbjct: 232 EVAITELDVAGASPTDY-VNVVNACLNVSSCVG--------ITVWG-VADPDSWRASTTP 281
Query: 700 FRLEPLFRRRVPKLYHILENL 720
+ F + P I++NL
Sbjct: 282 LLFDGNFNPK-PAYNAIVQNL 301
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINEC 111
K+ GN ++++D E A + Y+KA++L P N +N A Y + +F + C
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEE--KKFAECVQFC 65
Query: 112 NLALEVSSKYSKALLKRAQCYKALNRLDFAFRDVNNV 148
A+EV + ++A K KA++R AF+ N++
Sbjct: 66 EKAVEVGRE-TRADYKLIA--KAMSRAGNAFQKQNDL 99
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 52 KEEGNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINEC 111
KE GN ++K+D + A+ Y+KA +L P N + Y+ N A Y + G++ + C
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYI-VNQAAVYFEK--GDYNKCRELC 61
Query: 112 NLALEV 117
A+EV
Sbjct: 62 EKAIEV 67
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN L + +D +GA+ Y +A+++ P A SN+A + G P AI A
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDS--GNIPEAIASYRTA 137
Query: 115 LEVSSKYSKALLKRAQC 131
L++ + A A C
Sbjct: 138 LKLKPDFPDAYCNLAHC 154
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 368 ENGKVGKVVEIEPQPTCIEDWIIEF-AQLFKNHVGF----DSDSFLNLHELG 414
+NG V K V I P TC DW+ E A+ +N V F D F N ++ G
Sbjct: 363 DNG-VTKEVTINPDTTCGNDWVCEHRARQIRNMVNFRNVVDGQPFTNWYDNG 413
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 368 ENGKVGKVVEIEPQPTCIEDWIIEF-AQLFKNHVGF----DSDSFLNLHELG 414
+NG V K V I P TC DW+ E A+ +N V F D F N ++ G
Sbjct: 363 DNG-VTKEVTINPDTTCGNDWVCEHRARQIRNMVNFRNVVDGQPFTNWYDNG 413
>pdb|2KTR|B Chain B, Nmr Structure Of P62 Pb1 Dimer Determined Based On Pcs
Length = 100
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 293 FPSLK--GVLVKYKDQEGDLVTITTTDELRFVEMLFNSQSFLRLYIAE 338
FP+L+ G Y+D++GDLV ++ +EL + M + +YI E
Sbjct: 53 FPALRPGGFQAHYRDEDGDLVAFSSDEELT-MAMSYVKDDIFAIYIKE 99
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 79 PKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLALEVSSKYSKALLKRAQCYKALNRL 138
P N + Y N+ Y + G ++ AI ALE+ ++A Y
Sbjct: 5 PGNSAEAWY---NLGNAYYKQG--DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 59
Query: 139 DFAFRDVNNVLSMEPNNSSALEVLESVKQ 167
D A L ++PNN+ A + L + KQ
Sbjct: 60 DEAIEYYQKALELDPNNAEAKQNLGNAKQ 88
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P N A N+ Y + G++ AI A
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQ--GDYDEAIEYYQKA 69
Query: 115 LEVSSKYSKA 124
LE+ ++A
Sbjct: 70 LELDPNNAEA 79
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 55 GNKLFQKRDHEGAMLKYEKALKLLPKNHIDVAYLRSNMAGCYMQMGLGEFPRAINECNLA 114
GN +++ D++ A+ Y+KAL+L P++ A N+ Y + G++ AI A
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQ--GDYDEAIEYYQKA 63
Query: 115 LEVSSK 120
LE+ +
Sbjct: 64 LELDPR 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,750,460
Number of Sequences: 62578
Number of extensions: 749769
Number of successful extensions: 2387
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 75
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)