Query 005008
Match_columns 719
No_of_seqs 186 out of 1010
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 16:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 2.6E-73 5.6E-78 604.9 63.3 679 1-718 1-736 (982)
2 KOG2081 Nuclear transport regu 100.0 7.1E-73 1.5E-77 580.8 51.5 550 26-623 2-558 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 1.6E-50 3.6E-55 422.5 51.0 667 7-718 3-729 (980)
4 COG5101 CRM1 Importin beta-rel 100.0 2.4E-43 5.2E-48 361.8 44.6 592 6-632 13-680 (1053)
5 KOG2023 Nuclear transport rece 100.0 1.2E-38 2.6E-43 329.9 32.5 519 5-630 11-576 (885)
6 KOG2171 Karyopherin (importin) 100.0 2.1E-34 4.6E-39 318.8 48.4 577 6-696 3-600 (1075)
7 KOG1241 Karyopherin (importin) 100.0 1.9E-25 4.2E-30 236.3 45.5 508 19-628 12-556 (859)
8 KOG2020 Nuclear transport rece 100.0 3.5E-24 7.7E-29 243.1 45.8 589 4-630 7-658 (1041)
9 KOG1991 Nuclear transport rece 99.9 1.8E-18 3.8E-23 189.4 54.5 604 3-711 1-667 (1010)
10 COG5215 KAP95 Karyopherin (imp 99.9 3.7E-19 8E-24 182.8 44.2 522 9-631 6-558 (858)
11 PF08389 Xpo1: Exportin 1-like 99.7 3.3E-16 7.2E-21 144.9 13.1 146 104-263 1-148 (148)
12 KOG1992 Nuclear export recepto 99.7 1E-11 2.2E-16 134.1 44.8 536 5-631 3-602 (960)
13 COG5656 SXM1 Importin, protein 99.6 5.3E-10 1.2E-14 119.6 51.5 599 19-711 14-666 (970)
14 KOG2274 Predicted importin 9 [ 99.4 1.1E-08 2.3E-13 112.3 44.6 595 9-715 6-689 (1005)
15 KOG1410 Nuclear transport rece 99.4 8E-07 1.7E-11 94.6 55.3 298 3-315 1-336 (1082)
16 KOG1993 Nuclear transport rece 98.9 5.3E-05 1.1E-09 82.9 40.1 172 9-198 2-182 (978)
17 PF03810 IBN_N: Importin-beta 98.9 5.8E-09 1.2E-13 84.2 7.3 67 28-98 1-76 (77)
18 KOG2171 Karyopherin (importin) 97.9 0.095 2.1E-06 61.0 46.9 302 210-562 94-424 (1075)
19 COG5657 CSE1 CAS/CSE protein i 97.7 0.14 3E-06 58.1 43.7 127 3-138 1-134 (947)
20 KOG1241 Karyopherin (importin) 97.7 0.16 3.5E-06 56.5 45.9 519 44-627 177-732 (859)
21 PF08506 Cse1: Cse1; InterPro 97.3 0.0023 5.1E-08 67.6 12.6 202 327-551 140-370 (370)
22 KOG1242 Protein containing ada 96.9 0.91 2E-05 49.8 29.8 218 377-630 208-427 (569)
23 PF01602 Adaptin_N: Adaptin N 96.1 3.5 7.7E-05 46.5 38.6 426 18-559 52-486 (526)
24 KOG1824 TATA-binding protein-i 95.9 4.9 0.00011 46.4 38.1 136 452-601 491-639 (1233)
25 KOG0915 Uncharacterized conser 95.8 0.48 1E-05 56.9 18.2 164 374-563 987-1167(1702)
26 PF08767 CRM1_C: CRM1 C termin 94.9 1.1 2.4E-05 46.7 16.1 170 211-395 42-224 (319)
27 KOG1824 TATA-binding protein-i 93.6 18 0.00039 42.1 41.5 506 59-625 18-622 (1233)
28 KOG1059 Vesicle coat complex A 93.6 15 0.00034 41.3 33.6 218 84-359 140-365 (877)
29 PF02985 HEAT: HEAT repeat; I 93.4 0.11 2.4E-06 33.1 3.2 29 530-558 1-31 (31)
30 COG5181 HSH155 U2 snRNP splice 93.3 15 0.00034 40.5 21.9 224 327-606 687-918 (975)
31 PF12755 Vac14_Fab1_bd: Vacuol 93.1 0.51 1.1E-05 39.4 7.7 40 524-563 22-63 (97)
32 PF12348 CLASP_N: CLASP N term 92.8 2.2 4.7E-05 42.1 13.4 139 450-603 17-163 (228)
33 PRK09687 putative lyase; Provi 92.5 14 0.0003 37.8 19.3 205 9-267 25-249 (280)
34 PF12755 Vac14_Fab1_bd: Vacuol 92.2 0.7 1.5E-05 38.6 7.3 88 457-553 3-93 (97)
35 KOG0213 Splicing factor 3b, su 90.4 36 0.00079 38.6 27.4 307 240-607 798-1114(1172)
36 PF13513 HEAT_EZ: HEAT-like re 90.4 0.38 8.2E-06 35.3 3.7 54 454-515 1-54 (55)
37 KOG1991 Nuclear transport rece 90.3 44 0.00095 39.3 47.9 464 212-716 105-653 (1010)
38 KOG0166 Karyopherin (importin) 90.2 3.9 8.5E-05 44.7 12.4 138 541-713 124-264 (514)
39 cd00020 ARM Armadillo/beta-cat 89.4 0.58 1.2E-05 40.5 4.7 94 452-556 19-120 (120)
40 PF13513 HEAT_EZ: HEAT-like re 89.1 0.55 1.2E-05 34.4 3.7 50 504-554 3-55 (55)
41 PF10508 Proteasom_PSMB: Prote 88.0 5.2 0.00011 44.7 12.1 137 453-604 51-193 (503)
42 PF12348 CLASP_N: CLASP N term 87.9 4.8 0.0001 39.6 10.7 171 61-270 22-208 (228)
43 PTZ00429 beta-adaptin; Provisi 86.3 76 0.0016 37.2 43.0 127 18-159 78-209 (746)
44 PF08167 RIX1: rRNA processing 80.7 10 0.00022 35.3 8.6 81 45-134 30-111 (165)
45 PF03378 CAS_CSE1: CAS/CSE pro 79.9 98 0.0021 33.8 17.5 196 145-395 46-252 (435)
46 KOG1020 Sister chromatid cohes 75.8 49 0.0011 40.9 13.9 95 208-316 828-924 (1692)
47 PF03378 CAS_CSE1: CAS/CSE pro 74.3 1.3E+02 0.0027 33.0 16.0 78 544-625 176-253 (435)
48 KOG1062 Vesicle coat complex A 74.0 1.8E+02 0.0039 33.8 37.3 28 330-359 352-379 (866)
49 KOG1062 Vesicle coat complex A 73.7 1.8E+02 0.0039 33.7 19.7 63 245-317 354-418 (866)
50 PLN03200 cellulose synthase-in 73.2 3.1E+02 0.0067 36.2 43.9 227 6-277 12-270 (2102)
51 COG5240 SEC21 Vesicle coat com 73.2 1.2E+02 0.0026 33.6 14.8 117 5-137 300-422 (898)
52 KOG0168 Putative ubiquitin fus 72.3 1.1E+02 0.0025 35.5 15.0 116 480-606 209-329 (1051)
53 KOG2023 Nuclear transport rece 71.2 1.9E+02 0.0041 32.9 43.1 164 457-630 636-803 (885)
54 KOG2160 Armadillo/beta-catenin 68.1 1.6E+02 0.0034 30.7 16.7 144 450-606 93-246 (342)
55 PF13646 HEAT_2: HEAT repeats; 67.8 34 0.00074 27.3 7.9 56 10-72 2-57 (88)
56 PF01602 Adaptin_N: Adaptin N 67.4 2.1E+02 0.0046 32.0 35.9 413 18-553 89-521 (526)
57 PF08389 Xpo1: Exportin 1-like 66.4 22 0.00048 31.8 7.2 43 509-551 106-148 (148)
58 PF12717 Cnd1: non-SMC mitotic 64.1 1.3E+02 0.0028 28.2 13.3 106 504-621 41-157 (178)
59 PF08064 UME: UME (NUC010) dom 63.9 68 0.0015 27.2 9.1 91 528-624 10-106 (107)
60 smart00802 UME Domain in UVSB 63.2 81 0.0017 26.9 9.2 91 527-623 9-105 (107)
61 KOG2753 Uncharacterized conser 63.1 1.9E+02 0.0041 29.9 14.6 77 524-603 102-179 (378)
62 PF12717 Cnd1: non-SMC mitotic 62.5 1.4E+02 0.003 28.0 13.0 88 211-314 3-93 (178)
63 KOG0168 Putative ubiquitin fus 59.9 3.3E+02 0.0072 32.0 15.5 33 681-716 333-365 (1051)
64 PF13646 HEAT_2: HEAT repeats; 59.5 21 0.00046 28.6 5.1 57 8-70 31-87 (88)
65 PF08167 RIX1: rRNA processing 57.2 1.6E+02 0.0035 27.2 11.2 104 142-271 38-146 (165)
66 PRK09687 putative lyase; Provi 56.6 2.3E+02 0.0051 28.8 14.7 124 431-596 155-278 (280)
67 KOG1059 Vesicle coat complex A 56.1 78 0.0017 36.0 9.9 65 504-574 160-226 (877)
68 PF02985 HEAT: HEAT repeat; I 53.4 31 0.00068 21.6 4.0 21 451-471 11-31 (31)
69 COG5064 SRP1 Karyopherin (impo 52.5 49 0.0011 34.0 7.1 91 455-556 172-272 (526)
70 COG5215 KAP95 Karyopherin (imp 49.8 4.2E+02 0.009 29.7 40.2 370 212-630 344-735 (858)
71 COG5101 CRM1 Importin beta-rel 49.1 3.1E+02 0.0067 31.0 12.7 74 480-559 190-264 (1053)
72 COG5064 SRP1 Karyopherin (impo 46.0 2.3E+02 0.005 29.4 10.6 135 544-712 132-269 (526)
73 PF10363 DUF2435: Protein of u 45.2 1.1E+02 0.0024 25.2 7.0 71 531-605 5-77 (92)
74 KOG4653 Uncharacterized conser 44.8 5.7E+02 0.012 30.2 14.5 104 513-628 748-857 (982)
75 cd05134 RasGAP_RASA3 RASA3 (or 44.2 3.8E+02 0.0083 27.7 12.3 17 609-625 92-108 (310)
76 PF13251 DUF4042: Domain of un 42.8 2.5E+02 0.0053 26.6 9.8 88 538-629 49-156 (182)
77 PF00514 Arm: Armadillo/beta-c 42.7 44 0.00096 22.4 3.7 27 530-556 13-41 (41)
78 cd05394 RasGAP_RASA2 RASA2 (or 41.5 4.1E+02 0.0089 27.5 11.9 32 525-557 1-33 (313)
79 KOG0166 Karyopherin (importin) 38.4 2.9E+02 0.0064 30.6 10.8 131 456-601 127-267 (514)
80 COG5181 HSH155 U2 snRNP splice 36.4 6.9E+02 0.015 28.4 21.3 53 377-444 596-651 (975)
81 KOG0213 Splicing factor 3b, su 35.7 7.7E+02 0.017 28.7 31.4 182 410-603 726-915 (1172)
82 PRK10236 hypothetical protein; 34.7 75 0.0016 31.1 5.1 60 7-77 20-85 (237)
83 cd07064 AlkD_like_1 A new stru 34.7 1.5E+02 0.0033 28.6 7.5 62 16-87 20-83 (208)
84 KOG2011 Sister chromatid cohes 34.4 9.4E+02 0.02 29.4 15.4 216 325-557 112-356 (1048)
85 KOG1240 Protein kinase contain 33.5 1E+03 0.022 29.5 19.9 298 23-390 438-751 (1431)
86 cd00020 ARM Armadillo/beta-cat 33.3 2.1E+02 0.0045 23.9 7.5 91 18-118 17-118 (120)
87 PF14500 MMS19_N: Dos2-interac 33.1 4.2E+02 0.009 26.7 10.5 100 525-632 38-137 (262)
88 PF10441 Urb2: Urb2/Npa2 famil 32.3 4.8E+02 0.01 25.4 15.3 48 567-616 152-200 (223)
89 PF09184 PPP4R2: PPP4R2; Inte 32.2 3.4E+02 0.0073 27.8 9.7 105 6-117 2-109 (288)
90 PF09384 UTP15_C: UTP15 C term 31.1 2.1E+02 0.0045 26.0 7.3 44 521-564 70-113 (148)
91 KOG0567 HEAT repeat-containing 29.3 2.2E+02 0.0047 28.5 7.3 85 455-562 171-256 (289)
92 smart00802 UME Domain in UVSB 29.2 3.6E+02 0.0078 22.9 8.3 67 147-226 7-84 (107)
93 KOG1967 DNA repair/transcripti 28.9 1.3E+02 0.0028 35.4 6.4 97 522-620 809-915 (1030)
94 PF01603 B56: Protein phosphat 27.2 4.8E+02 0.01 28.3 10.5 127 213-356 192-323 (409)
95 PF12333 Ipi1_N: Rix1 complex 27.1 2.3E+02 0.005 23.8 6.3 51 526-576 8-60 (102)
96 KOG1240 Protein kinase contain 27.1 1.3E+03 0.028 28.7 14.4 142 84-269 570-726 (1431)
97 PF10274 ParcG: Parkin co-regu 27.0 4.1E+02 0.009 25.1 8.5 76 232-311 29-107 (183)
98 KOG2160 Armadillo/beta-catenin 25.3 8.1E+02 0.017 25.7 12.2 93 19-123 94-199 (342)
99 PF10441 Urb2: Urb2/Npa2 famil 25.1 3.7E+02 0.008 26.2 8.4 88 254-341 3-95 (223)
100 PF12460 MMS19_C: RNAPII trans 24.6 9.2E+02 0.02 26.1 30.1 349 243-623 1-374 (415)
101 KOG1242 Protein containing ada 23.7 1.1E+03 0.024 26.7 30.6 171 414-605 309-488 (569)
102 cd03568 VHS_STAM VHS domain fa 21.1 6.2E+02 0.013 22.8 10.5 41 522-562 30-72 (144)
103 PF08158 NUC130_3NT: NUC130/3N 20.5 3.4E+02 0.0075 19.7 5.2 34 85-118 12-46 (52)
104 PF10274 ParcG: Parkin co-regu 20.4 6.3E+02 0.014 23.9 8.3 88 527-618 36-128 (183)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-73 Score=604.88 Aligned_cols=679 Identities=19% Similarity=0.291 Sum_probs=520.4
Q ss_pred CCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCC
Q 005008 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (719)
Q Consensus 1 ~~~~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~ 80 (719)
|+.+.+++|+++|..||++++++.++.+++||++.|+|+.||.++++||+.++.+ ++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~-----evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSS-----EVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchh-----HHHHHhHHHHHHHHHhhhcc
Confidence 6777799999999999998899999999999999999999999999999988764 88999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCC----CchhHHHHHHHh
Q 005008 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT 154 (719)
Q Consensus 81 l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~----~~~~~~~L~~L~ 154 (719)
+|++++..|+.+++..+.+++.|++.|.||+|.++|.+.+++. .||+++.+++.+++...+. ...+..+|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999998999999999999999999986 5999999999999864321 124689999999
Q ss_pred hhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCc
Q 005008 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (719)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~ 234 (719)
.+|||....+ ++..+|..++.++......+..++..++....+...+.-.-..+..+++|+.+|+++. ..+.
T Consensus 156 ~~p~e~q~~~-----l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHVT-----LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG 227 (982)
T ss_pred cCcHhhhhcc-----chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence 9999996543 7888999999999999999999988888765432100000135789999999999964 2332
Q ss_pred chhcccchHHHHHHhcCC--CCh---HHHHHHHH------------HHHhh-----cCCChhHHHHHhhhh-hHHHchh-
Q 005008 235 GSLAAHPLLNFVFNSLQV--QSS---FDVAIEVL------------VELVG-----RHEGLPQALLCRVPF-LKELLLL- 290 (719)
Q Consensus 235 ~~~~~~~ll~~~~~~l~~--~~~---~~~a~~~l------------~eil~-----~~~~~~~~l~~~~~~-l~~~~~~- 290 (719)
.....++..++..+.. +.. ++.+++.. +..+. .+..-...+++-+.+ +++....
T Consensus 228 --~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 --MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred --ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2233445555554441 111 11111111 11111 111112233333333 2332110
Q ss_pred hhhhcCc--hhHHhHHHHHHHHHHHhchHHHHhCC------hhHHHHHHHHHhhccCCCCCch----hhhhhHHHHHHHH
Q 005008 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEAS------PEALALADALLSCVAFPSEDWE----IADSTLQFWSTLA 358 (719)
Q Consensus 291 ~a~~~~d--~e~~~~l~~l~~~~~e~~~~~l~~~~------~~~~~ll~~ll~~~~~p~~d~~----v~~~~~~FW~~l~ 358 (719)
+...+.| +|....++++++..+|++.+.++++. ..+.++++.|+.|++.|| -|+ ++..++.|||+|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG-~ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPG-QYPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCC-CccHHHHHhHHHHHHHHHHH
Confidence 2344556 67889999999999999999987642 247899999999999998 354 4568999999999
Q ss_pred HHHhccchhhhhhhhhhHHhhH-HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchH--
Q 005008 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-- 435 (719)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~-- 435 (719)
|++..+..+.. +.....|+ |+|.+|++++++|+.+|.++.+..|..|++|.|++||+|++|+++++|.++|+..
T Consensus 385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~ 461 (982)
T KOG2022|consen 385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD 461 (982)
T ss_pred HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99865533221 23345565 9999999999999999999877789999999999999999999999999999642
Q ss_pred HHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 005008 436 FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG 514 (719)
Q Consensus 436 ~l~~~~~~~~~~~~-~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig 514 (719)
++...+.+...+.. .+.+|+..|+|+|++.++++....+++ +.++.++...++.+....+ ..+..| ++.+||
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~ql~~T-ss~~ig 534 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQLLST-SSDLIG 534 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hhHHHH-HHHHHH
Confidence 23333333333322 345699999999999999999876554 4566655554432211000 135555 579999
Q ss_pred hhHHHHHhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHH
Q 005008 515 SYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVG 593 (719)
Q Consensus 515 ~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~e 593 (719)
.|+.|++.||.+|.+.++.+++|+++++....|-..+++||++|+.+|. | +.+.+. .+++.+.....+..++.+++.
T Consensus 535 s~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 535 SLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred HHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 9999999999999999999999999999888889999999999999985 5 555555 455556667778899999999
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCC---
Q 005008 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN--- 670 (719)
Q Consensus 594 ai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~--- 670 (719)
+||+|++..-+|++ ++++.++++|++..++.++...-. .+... ++.++ .+-+++++|.++..+.+..
T Consensus 613 sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l~~~~-~l~~iS~LftSL~~~~~~~d~d 682 (982)
T KOG2022|consen 613 SIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGID-----DQENH---LRIAF-QLNTISALFTSLINKKDIIDTD 682 (982)
T ss_pred HHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---HHHHH-HHHHHHHHHhccCCCCcccccc
Confidence 99999999988887 899999999999999998665432 22111 22222 4666789999998765311
Q ss_pred --CCC-----CchHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhcC
Q 005008 671 --PAG-----DDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (719)
Q Consensus 671 --~~~-----~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~g 718 (719)
..+ .-|++.++++++|++++++. +|.++.+|+|..|...+++++++|
T Consensus 683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~ 736 (982)
T KOG2022|consen 683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLL 736 (982)
T ss_pred chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhcccccc
Confidence 111 13789999999999999999 799999999999999999998875
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-73 Score=580.83 Aligned_cols=550 Identities=25% Similarity=0.392 Sum_probs=483.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhcCCCH
Q 005008 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (719)
Q Consensus 26 ~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~ 105 (719)
.+|+.||++||+|+++|++|.++|+.. .+.+..+|||||+++||+++|+++|+.....+|++++++++....++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-----~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-----CDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999999876 367999999999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhc
Q 005008 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (719)
Q Consensus 106 ~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~ 185 (719)
.+++||+.++|+++++++.|.+++.+++..+++.. .....+|++|+++|||..+.+. .....||+++++.+...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~~---~~~~~lLeiL~VlPEE~~~~~~---~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNKH---PAVPILLEILKVLPEETRDIRL---TVGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcCC---ccHHHHHHHHHhCcHhhcchhh---hhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999998742 2378999999999999976543 26889999999999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhccc-chHHHHHHhcCCCChHHHHHHHHH
Q 005008 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQSSFDVAIEVLV 264 (719)
Q Consensus 186 ~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~l~~~~~~~~a~~~l~ 264 (719)
.+.++.++..+++.+..+ .+....++++|+.||.+.+ .+|.+.+... |++.++|..+.++.+++.|++|++
T Consensus 151 ~~~~L~~l~~lLe~~~l~-----~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLK-----SSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCCC-----hhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 999999999999986532 2567899999999999986 5788876544 999999999999999999999999
Q ss_pred HHhhcCC------ChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhcc
Q 005008 265 ELVGRHE------GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (719)
Q Consensus 265 eil~~~~------~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~ 338 (719)
.++.... .+...++..+.-|...+. .+...+|.|...++||+|+++||+|...+..+|++++..++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 9987442 244455554444444432 477789999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHh
Q 005008 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (719)
Q Consensus 339 ~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~ 418 (719)
|| |++|.+.+|.|||.+.+.++..++ ......|+|+|.+|+..+..+++||++. ++..|+.++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~------~~~~~~frpy~~rLvs~l~~h~qlp~~~---~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDD------DEALGIFRPYFLRLVSLLKRHVQLPPDQ---FDLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhcccc------HHHHHHhHHHHHHHHHHHHHHccCCCcc---ccCccchhHHHHHHH
Confidence 98 789999999999999998865543 3667899999999999999999999964 344577899999999
Q ss_pred HhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhh
Q 005008 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (719)
Q Consensus 419 ~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~ 498 (719)
.++|++.|+..++|.+.++.+++.++.+ ++.+|+.+||+||++++++..++.++++. +|.+++++..+|...+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~~i-~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEENTI-MPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCccccch-HHHHHHHHhCCccchh---
Confidence 9999999999999999999999998775 45789999999999999999999877654 7888888888887654
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 005008 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (719)
Q Consensus 499 ~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l 578 (719)
+||++ +.++|+|++|+..||+++.++++|+..++...+++.+|+.+++++|..|+..+. .+.+.+..+...+
T Consensus 444 -----~~~ts-~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTS-ILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 68887 599999999999999999999999999999888999999999999999999874 4888888888777
Q ss_pred HhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHH
Q 005008 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (719)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l 623 (719)
.....+.+... +.+|++.++..+|.++. +..++.++.|.+..+
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k~-~~~~~el~~~~l~~l 558 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHKA-KIALEELCEPQLRNL 558 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhhh-hHHHHHHhhHHHhcc
Confidence 66566677777 99999999999999998 789999999987643
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-50 Score=422.51 Aligned_cols=667 Identities=16% Similarity=0.142 Sum_probs=483.2
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 7 IKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 7 ~~v~~av~~ly~~-~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
++++|||.+...+ .|+..|+||-+|+++++.||.||++|.+++.... +++.+||||.|||..+++..+++.+...
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t----s~d~vkf~clqtL~e~vrekyne~nl~e 78 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINET----SNDLVKFYCLQTLIELVREKYNEANLNE 78 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc----ccchhhhhhHHHHHHHHHHhhccCCHHH
Confidence 5799999998765 6899999999999999999999999999998764 3669999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--c----CCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 005008 86 KDALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~--~----~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~ 157 (719)
...+|.+++.|+... . .+|.+|+||+++.|+.|++..+ .|++++.|++..++-++ ...+.+..+++|-.+.
T Consensus 79 lqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 79 LQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Confidence 999999999999742 2 3578999999999999999887 59999999999997642 2346899999999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHh-chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcch
Q 005008 158 EEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (719)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~ 236 (719)
.|+.|.+.+++.-...+-+.+++.|+. +.+++.+++.+++....+. -+..+...+|+|+.+|+.| ++.+.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVSW-----IdInL 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVSW-----IDINL 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhhh-----hhhhh
Confidence 999987776532111233446778877 5799999999988775421 1235677899999988888 56778
Q ss_pred hcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHH--HHH---hhhhhHHHchhhhhhcCchhHHhHHHHHHHHH
Q 005008 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQA--LLC---RVPFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (719)
Q Consensus 237 ~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~--l~~---~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~ 311 (719)
+++.++++++|..++.++++.+|++|+.+++++.++-... ++. +...+... .++.+.+|.|+...++++++.+
T Consensus 229 IaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~--~s~dq~~d~df~e~vskLitg~ 306 (980)
T KOG2021|consen 229 IANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGY--HSADQMDDLDFWESVSKLITGF 306 (980)
T ss_pred hhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh--hccccccCchHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999864332 121 22222221 2355678899999999999999
Q ss_pred HHhchHHHHh----CC--------hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhh
Q 005008 312 GQAAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF 379 (719)
Q Consensus 312 ~e~~~~~l~~----~~--------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~ 379 (719)
|-+......+ .. ......+.+|+++..+. +.+++.-+++||+.+...+-+. +......
T Consensus 307 gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl--------~~ls~~q 376 (980)
T KOG2021|consen 307 GVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKL--------KALSSPQ 376 (980)
T ss_pred ceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhc--------ccccchh
Confidence 9887655533 11 13567889999999984 5678899999999977655222 1234445
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCC-C-CCCCCCchHHHHHhHhhHHHHHHHHhcCchHHH---HHHHHHhhcCCCCCCCh
Q 005008 380 FSVFSALLDALLLRAQVDESSFND-D-GMVDLPDGLVQFRMNLVELLVDICQLLRSATFI---QKVFFGSWGSANVPIPW 454 (719)
Q Consensus 380 ~~~~~~Lv~~l~~k~~~p~~~~~~-~-~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l---~~~~~~~~~~~~~~~~W 454 (719)
+-++.+++.++++|+.|++.-+++ + .++||++.|.++|+++. .+++....+.++.++ .+.+......+ ...+|
T Consensus 377 k~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~ns-~e~sw 454 (980)
T KOG2021|consen 377 KVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMNS-KEESW 454 (980)
T ss_pred hccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcchH
Confidence 667888899999999999875432 2 33466788999999997 566776777776433 33343332222 34679
Q ss_pred hHHHHHHHHHHHhhhhcccCCccc---chh------HHHHHH--HHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC
Q 005008 455 KEVETKLFALNVVSEVVLQEGQAF---DFS------VIMQLV--AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF 523 (719)
Q Consensus 455 ~~~Ea~L~~l~~i~e~~~~~~~~~---~l~------~i~~ll--~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~ 523 (719)
+++|+++|.++.+||+.+.+.-.+ ++. .+..++ .+++.|+|+.. ++.+ +++|.||..||...
T Consensus 455 qevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lV----qLlf---mE~ivRY~kff~~e 527 (980)
T KOG2021|consen 455 QEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELV----QLLF---MELIVRYNKFFSTE 527 (980)
T ss_pred HHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHH----HHHH---HHHHHHHHHHHhcc
Confidence 999999999999999987431100 111 222332 34678888642 3444 79999999999999
Q ss_pred ccchHHHHHHHH--HhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHh----------cCCChhhHH
Q 005008 524 QTNARPLLLFLA--AGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK----------RHLPLEDEE 589 (719)
Q Consensus 524 p~~L~~vl~~l~--~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~----------~~l~~~~~~ 589 (719)
+++.+.++++++ +|++|. .|+.+|++.|.++.+.-++.+. |+..+++..+...|+. .....+++.
T Consensus 528 sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddql 606 (980)
T KOG2021|consen 528 SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQL 606 (980)
T ss_pred hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcCCCcCccccccccccccc
Confidence 999999999999 888885 4999999999999999999986 5556667777766621 123467899
Q ss_pred HHHHHHHHHHc--cCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCC
Q 005008 590 EVVGAISLILG--SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (719)
Q Consensus 590 ~l~eai~~vi~--~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~ 667 (719)
.++|++|.+|. ..|.|+. ..++..+++|++.+..-......-.+....|+...+... .+--++++-+......
T Consensus 607 yIfEtiGviI~l~n~paE~q-aay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~----~lmaig~lakgf~~rl 681 (980)
T KOG2021|consen 607 YIFETIGVIITLNNSPAELQ-AAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHH----ILMAIGTLAKGFHIRL 681 (980)
T ss_pred eeeecceEEEeCCCCCHHHH-HHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHH----HHHHHHHHhhcccccC
Confidence 99999999996 4777775 789999999998876654443321111112322211111 1111233322222211
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhccccHHHHHHH-HHHHHHHHhcC
Q 005008 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAAC-RALSLAIQSSG 718 (719)
Q Consensus 668 ~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c-~~~~~~~~~~g 718 (719)
. ...+..+..++.++..++-.++.. + +-.+.++... ..+.+++-++|
T Consensus 682 v--t~~qvg~~~vf~~~ldvil~~ls~-f-~k~E~iRsavrft~hRmI~~lg 729 (980)
T KOG2021|consen 682 V--TENQVGNMVVFSNILDVILVTLSF-F-NKFENIRSAVRFTFHRMIPILG 729 (980)
T ss_pred c--chhcccHHHHHHHHHHHHHHHHhh-c-cccchhHHHHHHHHHHHHHhcc
Confidence 0 122334567777766666666652 4 4445555544 45566666665
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-43 Score=361.81 Aligned_cols=592 Identities=15% Similarity=0.204 Sum_probs=440.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
.+-+.+.|.++| .++...++||++.|.+||..|+||+-++++|+.++. ++.+|.|.+.|..-|+++|.-+|+++
T Consensus 13 iallDkVVttfy-qg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~-----pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFY-QGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKL-----PQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccC-----cchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 455778888999 567778999999999999999999999999998765 49999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 005008 86 KDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~ 157 (719)
+.++|+.+++.+..-+. ..+.+.+||-.+|..++.+-+ .||++|++++...+. +-..++.-+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 99999999998876542 237899999999999999876 699999999997764 3446788899999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchh
Q 005008 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (719)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (719)
||+.+...-. ++..+...++..|....+.+++++.++++.+.+ +++..+.|+.+..++.| +|.+.+
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~w-----iPl~yI 229 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLEW-----IPLDYI 229 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHhh-----CchhHH
Confidence 9998754322 455566667788888999999999999998653 45666666655555544 455677
Q ss_pred cccchHHHHHHhcC-CCChHHHHHHHHHHHhhcCC-----ChhHH---HHHhhhh-------------hHHHchhhhhhc
Q 005008 238 AAHPLLNFVFNSLQ-VQSSFDVAIEVLVELVGRHE-----GLPQA---LLCRVPF-------------LKELLLLPALTD 295 (719)
Q Consensus 238 ~~~~ll~~~~~~l~-~~~~~~~a~~~l~eil~~~~-----~~~~~---l~~~~~~-------------l~~~~~~~a~~~ 295 (719)
..+.++.++.+.+. .|+.+.++.+|++|++..++ ...+. ++-++.. +.+.|. ....
T Consensus 230 feTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~~~~ 307 (1053)
T COG5101 230 FETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--GMDK 307 (1053)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--ccCh
Confidence 78889999886665 68889999999999998552 11111 1111110 111111 1123
Q ss_pred CchhHHhHHHHHHHHHHHhchHHHHhCC--hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhcc---------
Q 005008 296 GDEKVIGGLACLMSEIGQAAPSLIVEAS--PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL--------- 364 (719)
Q Consensus 296 ~d~e~~~~l~~l~~~~~e~~~~~l~~~~--~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~--------- 364 (719)
.+.+++++++.+++++-+.|...+.... ...+.-...|+.++... +.++...++++|..|.-++++.
T Consensus 308 neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~tem 385 (1053)
T COG5101 308 NEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPATEM 385 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 3557899999999999999998886532 23456678899998884 6899999999999987767531
Q ss_pred ch---------------hhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCch---------HHHHHhHh
Q 005008 365 DA---------------SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDG---------LVQFRMNL 420 (719)
Q Consensus 365 ~~---------------~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~---------f~~~R~~~ 420 (719)
+. +..+..+-+...|+.++.+|.-+++.+|.-|++.+.-+. |+.+- -.++-+.+
T Consensus 386 ~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVen--degEivRefvketDtI~lYksm 463 (1053)
T COG5101 386 SPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVEN--DEGEIVREFVKETDTIELYKSM 463 (1053)
T ss_pred CcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEEC--CCcHHHHHHhccccHhHHHHHH
Confidence 00 111223456778999999999999999999988542111 11121 22333567
Q ss_pred hHHHHHHHHhcCch--H-HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCc-ccchhHHHHHHHHhccCchh
Q 005008 421 VELLVDICQLLRSA--T-FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ-AFDFSVIMQLVAVLSASRSE 496 (719)
Q Consensus 421 ~d~l~~~~~il~~~--~-~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~-~~~l~~i~~ll~~l~~~~~~ 496 (719)
.+++.+..++.-.+ . ++..+.-++. +..++|+.+...+|++|+|+....++.+ .+ +..++.-+..+......
T Consensus 464 RevLvyLthL~v~Dte~~mi~Klarq~d---g~EWsw~nlNtLcWAIGSISGamsE~~EkrF-~VnviKdLL~LcemKrg 539 (1053)
T COG5101 464 REVLVYLTHLIVDDTEKYMIGKLARQLD---GKEWSWNNLNTLCWAIGSISGAMSEVNEKRF-FVNVIKDLLALCEMKRG 539 (1053)
T ss_pred hhHHHHHhhhhhhhHHHHHHHHHHHHhc---CCccchhhHhHHHHHHhcccchhhhHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 77888887764333 1 3333333332 3578999999999999999998886543 22 33455544455432221
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCc---hHHHH
Q 005008 497 ELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEIL 571 (719)
Q Consensus 497 ~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p~---~~~~l 571 (719)
..+ .+++.+.+|.++|+|.+|++.|..||.+|+..+++.|+. ..++..||..|.++.++|+.+.+..+ ..+.+
T Consensus 540 Kdn--KAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI 617 (1053)
T COG5101 540 KDN--KAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFI 617 (1053)
T ss_pred CCc--chhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHH
Confidence 112 268888899999999999999999999999999999985 45999999999999999998875321 23455
Q ss_pred HHHHHHHH--hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 005008 572 MWIGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN 632 (719)
Q Consensus 572 ~~~~~~l~--~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~ 632 (719)
..+...+. .+.+.+......|||+|.+|+..|........+..+++-....|.++..++..
T Consensus 618 ~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~ 680 (1053)
T COG5101 618 VYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADE 680 (1053)
T ss_pred HHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhh
Confidence 66666654 56778888999999999999999987665667778888888888888777654
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-38 Score=329.90 Aligned_cols=519 Identities=17% Similarity=0.166 Sum_probs=381.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (719)
Q Consensus 5 ~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~ 84 (719)
...++.+.++.-. +||++.|+.++.-|++|+.-|+.-.+...+|...++ .+..+|-.|...||+.++.+|...+.+
T Consensus 11 ~l~ql~~lLk~s~-Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~---~d~~~Rs~aGLlLKNnvr~~~~~~~~~ 86 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQ-SPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKS---EDVPTRSLAGLLLKNNVRGHYNSIPSE 86 (885)
T ss_pred HHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhcccchhceeeEEEecccc---cchhHHHHhhhhHhccccccccCCChH
Confidence 4556666666643 789999999999999999999999999999987764 577899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhcccc
Q 005008 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (719)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~ 162 (719)
....+|..++..+. +.++.||+.....++.++-... .||+.++.+.+.+.+. +.++++-.+.-|..++|+...
T Consensus 87 ~~~yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 87 VLDYIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred HHHHHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHH
Confidence 99999999988774 3456788888887887776654 7999999999999764 345677788888888886532
Q ss_pred ccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccch
Q 005008 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (719)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~l 242 (719)
. +..+. ..+-+.-..|..++++.+ +.+.++..+++|++.+|-.- +. .+
T Consensus 162 ~------lds~~---~~rpl~~mipkfl~f~~h------------~spkiRs~A~~cvNq~i~~~-----~q------al 209 (885)
T KOG2023|consen 162 F------LDSDV---LTRPLNIMIPKFLQFFKH------------PSPKIRSHAVGCVNQFIIIQ-----TQ------AL 209 (885)
T ss_pred H------Hhhhc---ccCchHHhHHHHHHHHhC------------CChhHHHHHHhhhhheeecC-----cH------HH
Confidence 1 11110 012233346666776654 23568889999998876531 11 11
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhC
Q 005008 243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (719)
Q Consensus 243 l~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~ 322 (719)
. ..+-.+.+.++..+ .++|+++.+++|+.|+-+.|..+..++.
T Consensus 210 ~-----------------------------------~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~p- 252 (885)
T KOG2023|consen 210 Y-----------------------------------VHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVP- 252 (885)
T ss_pred H-----------------------------------HHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhccc-
Confidence 1 11111111122112 5778889999999999999999988885
Q ss_pred ChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCC
Q 005008 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (719)
Q Consensus 323 ~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~ 402 (719)
|...++++||..+..+ |++|+-.++|||..++|. +-......|++.+++++++.+|+|.+++..
T Consensus 253 --hl~~IveyML~~tqd~--dE~VALEACEFwla~aeq------------pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 253 --HLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQ------------PICKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred --chHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcC------------cCcHHHHHHHHHHHHHHHHccCccccccHH
Confidence 5678899999999986 788999999999999884 244678899999999999999999654210
Q ss_pred ----C-----------------------------------CCCCCCCchHHHH--HhHhhHHHHHHHHhcCchHHHHHHH
Q 005008 403 ----D-----------------------------------DGMVDLPDGLVQF--RMNLVELLVDICQLLRSATFIQKVF 441 (719)
Q Consensus 403 ----~-----------------------------------~~~~d~~d~f~~~--R~~~~d~l~~~~~il~~~~~l~~~~ 441 (719)
+ +++.||+|.|.++ |+--+..+.-...+.|.+ ++..++
T Consensus 317 LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~ 395 (885)
T KOG2023|consen 317 LLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILL 395 (885)
T ss_pred HhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHH
Confidence 0 0001222334443 443333333334556654 666666
Q ss_pred HHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 005008 442 FGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS 521 (719)
Q Consensus 442 ~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~ 521 (719)
.-+... ..+..|-..||+++++|+|||++....-++ +|.++.++..+.++..+. ||..| ||+++||+.|+.
T Consensus 396 PlLk~~-L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~~L~DKkpl------VRsIT-CWTLsRys~wv~ 466 (885)
T KOG2023|consen 396 PLLKEH-LSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLSLLDDKKPL------VRSIT-CWTLSRYSKWVV 466 (885)
T ss_pred HHHHHH-cCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHHHhccCccc------eeeee-eeeHhhhhhhHh
Confidence 644331 235679999999999999999998765443 677777666666655542 56655 899999999998
Q ss_pred hCc--cchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 005008 522 AFQ--TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597 (719)
Q Consensus 522 ~~p--~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ 597 (719)
..+ +|+.++|.-+++.+-| .+||.+||.||..+-++...+|+ |++..+|.++..++..+ ..+....+|+|||+
T Consensus 467 ~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kY--Q~KNLlILYDAIgt 543 (885)
T KOG2023|consen 467 QDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKY--QKKNLLILYDAIGT 543 (885)
T ss_pred cCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHH--hhcceehHHHHHHH
Confidence 643 6999999999988876 56999999999999999999987 55555566666666544 45568899999999
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 005008 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGD 630 (719)
Q Consensus 598 vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~ 630 (719)
++..+...--++.|++.++.|++++|+.+-+..
T Consensus 544 lAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D 576 (885)
T KOG2023|consen 544 LADSVGHALNKPAYIQILMPPLIEKWELLSDSD 576 (885)
T ss_pred HHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc
Confidence 999887665557899999999999999976543
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=318.80 Aligned_cols=577 Identities=16% Similarity=0.191 Sum_probs=409.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
+.++.+.++.|. +||+..|++|++-|+..-+++..-.....++.... ++++|.|||..+|+.+.+.|+.++++.
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~-----~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILATSA-----DPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 466999999987 78889999999999966555445555556665543 569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccc
Q 005008 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~ 163 (719)
+..||.+||..+.+ ...+.||+|+|.++|.++.... .||+.++.++++.++. ++...+..+.+|..+|+-+++.
T Consensus 77 ~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc
Confidence 99999999999875 4557899999999999998764 5999999999999775 5667899999999999988642
Q ss_pred cccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchH
Q 005008 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (719)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll 243 (719)
+..+...+..++.++++..+ ..++..+++++.+.+.+. +.+. ...
T Consensus 153 ------------------~~~~~~~l~~lf~q~~~d~s--------~~vr~~a~rA~~a~~~~~-----~~~~----~~~ 197 (1075)
T KOG2171|consen 153 ------------------LQPHLDDLLRLFSQTMTDPS--------SPVRVAAVRALGAFAEYL-----ENNK----SEV 197 (1075)
T ss_pred ------------------cchhHHHHHHHHHHhccCCc--------chHHHHHHHHHHHHHHHh-----ccch----HHH
Confidence 12345678889999998653 238999999999998862 1000 000
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCC
Q 005008 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (719)
Q Consensus 244 ~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~ 323 (719)
+.+..++|.++...+. .++.+|.+.....-..|.++.+..++++.+
T Consensus 198 ----------------------------~~~~~llP~~l~vl~~----~i~~~d~~~a~~~l~~l~El~e~~pk~l~~-- 243 (1075)
T KOG2171|consen 198 ----------------------------DKFRDLLPSLLNVLQE----VIQDGDDDAAKSALEALIELLESEPKLLRP-- 243 (1075)
T ss_pred ----------------------------HHHHHHhHHHHHHhHh----hhhccchHHHHHHHHHHHHHHhhchHHHHH--
Confidence 1123445555543332 456777777888899999999999988874
Q ss_pred hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhc-cCCC-CC
Q 005008 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ-VDES-SF 401 (719)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~-~p~~-~~ 401 (719)
++..++++.+...+.-.-|..+...+++|...+.+.. +.+.....++..+|+..++..|. ...| +|
T Consensus 244 -~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----------p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 244 -HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----------PAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred -HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----------HHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 6778899999998886556778899999988888753 34455566677788888877665 2222 22
Q ss_pred CCCCCCCCCchHHHHHhHhhHHHHHH-HHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccch
Q 005008 402 NDDGMVDLPDGLVQFRMNLVELLVDI-CQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (719)
Q Consensus 402 ~~~~~~d~~d~f~~~R~~~~d~l~~~-~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l 480 (719)
.++++ .|+|+ .+--+.++.-..|. ..-||++..+..+++.+... .++.+|..+.|+|.+|++++||+.+.... .+
T Consensus 312 ~~~d~-~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~-l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l 387 (1075)
T KOG2171|consen 312 SNEDD-LDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAM-LQSTEWKERHAALLALSVIAEGCSDVMIG-NL 387 (1075)
T ss_pred ccccc-ccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHcccHHHHHH-HH
Confidence 22222 22233 22223333333443 34488887777777765332 25678999999999999999999864332 27
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-----CccchHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 005008 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-----FQTNARPLLLFLAAGISEAVSSNACASALRKIC 555 (719)
Q Consensus 481 ~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~-----~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc 555 (719)
+.|++++....++|+|+ ||+++ |..||+++.-|.. |++.+++.|-+++..-.+++|+.+||.|+.+|.
T Consensus 388 ~~Il~~Vl~~l~Dphpr------Vr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPR------VRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHhhcCCCCHH------HHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 88999988888999974 78875 8999999998864 466777777777777777889999999999999
Q ss_pred HHhhcccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 005008 556 EDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHS 634 (719)
Q Consensus 556 ~~c~~~l~~p~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~ 634 (719)
++|.+....| |++.|++ ....|. .+-+...++.++.+||+|+.+.. ..+....+-++.-|.+++++....+
T Consensus 461 E~~~~~~l~p-YLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA~AA~------~~F~pY~d~~Mp~L~~~L~n~~~~d 532 (1075)
T KOG2171|consen 461 EECDKSILEP-YLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVADAAQ------EKFIPYFDRLMPLLKNFLQNADDKD 532 (1075)
T ss_pred HhCcHHHHHH-HHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHh------hhhHhHHHHHHHHHHHHHhCCCchh
Confidence 9999888766 7777776 444332 23367899999999999998753 3344455555556666666655332
Q ss_pred C---CCCchhHHHHHHHHHHhHhhh-------hhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 005008 635 L---IHNPATYTQILSSATRGLYRM-------GTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH 696 (719)
Q Consensus 635 ~---~~~~~~~~~~~~~~~~~l~~l-------~~~f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~ 696 (719)
. +....++...+..|+ +-+++ ..+.-.++. +.....+|...++...|..+.++++..|
T Consensus 533 ~r~LrgktmEcisli~~AV-Gke~F~~~a~eliqll~~~~~---~~~~~dd~~~sy~~~~warmc~ilg~~F 600 (1075)
T KOG2171|consen 533 LRELRGKTMECLSLIARAV-GKEKFLPLAEELIQLLLELQG---SDQDDDDPLRSYMIAFWARMCRILGDDF 600 (1075)
T ss_pred hHHHHhhHHHHHHHHHHHh-hhhhhhHhHHHHHHHHHhhcc---cchhhccccHHHHHHHHHHHHHHhchhh
Confidence 2 222222223332222 11111 111111111 1124568888999999999999998534
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-25 Score=236.34 Aligned_cols=508 Identities=14% Similarity=0.122 Sum_probs=342.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCh--HHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhh-----------cccCCCChhh
Q 005008 19 DTESCNRVAANQWLVQFQQTD--AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (719)
Q Consensus 19 ~~~~~~~~~A~~~L~~fq~s~--~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~-----------~~~~~l~~~~ 85 (719)
+||+..|++|+++|.++|..+ ..-....+.|...+ .+...|.-|+.+||+-+. .+|.+++.+.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 788889999999999999875 34445556665554 356999999999999875 3499999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccc
Q 005008 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~ 165 (719)
+.++|+.++..|..-...-+....|+..++|.+-+....||+++..+.+.....++. ...+..|+.+..++|++.
T Consensus 88 reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~---- 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDID---- 162 (859)
T ss_pred HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCC----
Confidence 999999999998632111123444444444444444447999999999998764322 356889999999999873
Q ss_pred cccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHH
Q 005008 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245 (719)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~ 245 (719)
+ +.+.+....++.-+.+.+.... ++..++..+++|+-.-+.|..- ++..+ ....-+++.
T Consensus 163 ------p-------evl~~~sN~iLtaIv~gmrk~e------~s~~vRLaa~~aL~nsLef~~~-nF~~E-~ern~iMqv 221 (859)
T KOG1241|consen 163 ------P-------EVLEQQSNDILTAIVQGMRKEE------TSAAVRLAALNALYNSLEFTKA-NFNNE-MERNYIMQV 221 (859)
T ss_pred ------H-------HHHHHHHhHHHHHHHhhccccC------CchhHHHHHHHHHHHHHHHHHH-hhccH-hhhceeeee
Confidence 1 2466678888888887776543 3457899999999988887521 22221 234557777
Q ss_pred HHHhcCCC--ChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCC
Q 005008 246 VFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (719)
Q Consensus 246 ~~~~l~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~ 323 (719)
++++-+.+ ++..+|..||+.|.+.|.++++.-...
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~------------------------------------------- 258 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ------------------------------------------- 258 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 77776644 567889999999887654333221110
Q ss_pred hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccc---hh-hhhhhh-hhHHhhHHHHHHHHHHHHHHhcc-C
Q 005008 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD---AS-IAKNKK-HVEDMFFSVFSALLDALLLRAQV-D 397 (719)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~---~~-~~~~~~-~~~~~~~~~~~~Lv~~l~~k~~~-p 397 (719)
+++.+-+.-+.- .+++|+..++|||.+++++-.++. .+ ..+..+ ......+.-+.-++++|++.+.- +
T Consensus 259 ----alfaitl~amks--~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 259 ----ALFAITLAAMKS--DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred ----HHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 111111111111 256899999999999887532211 00 001111 22333455667788899988865 4
Q ss_pred CCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcc
Q 005008 398 ESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477 (719)
Q Consensus 398 ~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~ 477 (719)
++...|+|.. -+..|-+|+=.....|++ +.+++..=+.+. ..+++|+.+||+.+++|++-++-.+..-
T Consensus 333 e~~d~DdWnp---------~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~-i~~pdwr~reaavmAFGSIl~gp~~~~L- 400 (859)
T KOG1241|consen 333 EDDDDDDWNP---------AKAAGVCLMLFAQCVGDD-IVPHVLPFIEEN-IQNPDWRNREAAVMAFGSILEGPEPDKL- 400 (859)
T ss_pred CCcccccCcH---------HHHHHHHHHHHHHHhccc-chhhhHHHHHHh-cCCcchhhhhHHHHHHHhhhcCCchhhh-
Confidence 4433334432 345677777777777765 556555433221 2567899999999999999987654322
Q ss_pred cchhHHHHHHHHh---ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---CccchHHHHHHHHHhcCc-CchHHHHHHH
Q 005008 478 FDFSVIMQLVAVL---SASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNACASA 550 (719)
Q Consensus 478 ~~l~~i~~ll~~l---~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~---~p~~L~~vl~~l~~~l~~-~~v~~~Aa~a 550 (719)
.+.+.+.++.+ -.+|.. .++.++ -|++||.++++.. |.+++.+.++.++.||.+ |++...+|.|
T Consensus 401 --t~iV~qalp~ii~lm~D~sl------~VkdTa-AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA 471 (859)
T KOG1241|consen 401 --TPIVIQALPSIINLMSDPSL------WVKDTA-AWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWA 471 (859)
T ss_pred --hHHHhhhhHHHHHHhcCchh------hhcchH-HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence 23444433332 345553 256555 5999999998864 457999999999999997 9999999999
Q ss_pred HHHHHHHhhcccCCC--------chHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 005008 551 LRKICEDASALIDEP--------SNLEILMWIGEALEK-RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYE 621 (719)
Q Consensus 551 l~~lc~~c~~~l~~p--------~~~~~l~~~~~~l~~-~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~ 621 (719)
|..|.+.|..-...+ +|.+++..+...-.. ..-...-|...|++++.+|...|.+- ...+.++..-++.
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v--y~~v~~~~l~il~ 549 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV--YPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHH
Confidence 999999997654332 333444444332111 11234569999999999999988773 6788999999999
Q ss_pred HHHhhhc
Q 005008 622 AIGKLID 628 (719)
Q Consensus 622 ~l~~~~~ 628 (719)
+|.+.++
T Consensus 550 kl~q~i~ 556 (859)
T KOG1241|consen 550 KLDQTIS 556 (859)
T ss_pred HHHHHHH
Confidence 9999998
No 8
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.5e-24 Score=243.05 Aligned_cols=589 Identities=18% Similarity=0.175 Sum_probs=379.8
Q ss_pred hHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCC
Q 005008 4 DLQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (719)
Q Consensus 4 ~~~~~v~~av~~ly~~-~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~ 82 (719)
+...++.+|+..-+++ ++.+.|.+|+++|.+||..+++|..|..+|..++ +.+++|||.+.|.+-|+++|+.+|
T Consensus 7 ~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~-----~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 7 KLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLST-----NPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred hHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccC-----CchhheeeHHHHHHHHHHhcccCC
Confidence 4566777777775555 7888999999999999999999999999998774 349999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHh
Q 005008 83 SAAKDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (719)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~ 154 (719)
.+.+.++|+.+++.+...+. ..+.+++||+..+..++.+.. .||++++++.+.... +...++..+.+++
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~ 158 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILL 158 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHH
Confidence 99999999999997765332 236899999999999999976 599999999998876 3456889999999
Q ss_pred hhhhccccccccccCCChHHHHHHHH-HHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccC
Q 005008 155 VLPEEVIDSQASDCNISSAHRSQYGQ-ELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (719)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~-~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (719)
.|.||+.+..... + ..+|..+.+ .+......+.+++..+..... .. +..+++..+..++.+ +|
T Consensus 159 lLsEdvf~~ss~~--~-~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~-------~~-~~~atl~tl~~fl~w-----ip 222 (1041)
T KOG2020|consen 159 LLSEEVFDFSSSE--L-TQQKIIILKNLLENEFQQIFTLCSYIKEKAN-------SE-LLSATLETLLRFLEW-----IP 222 (1041)
T ss_pred HHHHHHhcccchH--H-HhhhHHHHHHHhhHHHHHHHHHHHHHHhhhh-------hH-HHHHHHHHHHHHhhc-----cc
Confidence 9999998765321 1 223333333 333345566666666554432 12 444454444443332 23
Q ss_pred cchhcccchHHHHH-HhcCCCChHHHHHHHHHHHhhcCCCh--------hHHHH------HhhhhhHHHchhhhhhcCch
Q 005008 234 QGSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHEGL--------PQALL------CRVPFLKELLLLPALTDGDE 298 (719)
Q Consensus 234 ~~~~~~~~ll~~~~-~~l~~~~~~~~a~~~l~eil~~~~~~--------~~~l~------~~~~~l~~~~~~~a~~~~d~ 298 (719)
.+.+..+..+..++ ..++.++.+..|++|+.++++..... .+... +....+.+.+. .....|.
T Consensus 223 ~~~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~dq 300 (1041)
T KOG2020|consen 223 LGYIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDEDQ 300 (1041)
T ss_pred HHHHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHhHH
Confidence 34544444455544 44556788999999999999875321 11111 11111222211 1123344
Q ss_pred -hHHhHHHHHHHHHHHhchHHHHhC----ChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhh-----
Q 005008 299 -KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASI----- 368 (719)
Q Consensus 299 -e~~~~l~~l~~~~~e~~~~~l~~~----~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~----- 368 (719)
.+.++++.+++.+++.+...+... +.....+..+++..+-+| -++...+++.|..+..+++.. +.+
T Consensus 301 ~~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~---se~~~~~ld~W~~lv~~l~~~-~~~ll~~s 376 (1041)
T KOG2020|consen 301 DSFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIEP---SEIFKICLDYWNKLVADLYYN-KPPLLQLS 376 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHhhhcc-cccccccc
Confidence 678999999999999999999762 223445555555555554 456667999999988776542 000
Q ss_pred --------hhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCC--CCCCCC-----CCchHHHHHhHhhHHHHHHHHhcCc
Q 005008 369 --------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN--DDGMVD-----LPDGLVQFRMNLVELLVDICQLLRS 433 (719)
Q Consensus 369 --------~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~--~~~~~d-----~~d~f~~~R~~~~d~l~~~~~il~~ 433 (719)
..+.+.....|..++.++--..+.+|.-|+.... +++... -..+|..+-..+.+++.....+-+.
T Consensus 377 ~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~ 456 (1041)
T KOG2020|consen 377 TTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVV 456 (1041)
T ss_pred cccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhh
Confidence 0011233778889999999888999998877442 111000 0123333333444554444443222
Q ss_pred hH--H-HHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCc-ccchhH-HHHHHHHhccCchhhhhhHHHHHHHH
Q 005008 434 AT--F-IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ-AFDFSV-IMQLVAVLSASRSEELKGFMHIVYRS 508 (719)
Q Consensus 434 ~~--~-l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~-~~~l~~-i~~ll~~l~~~~~~~~~~~~~l~~~t 508 (719)
+. + ...+..++. +..++|..+.--++++++++....++.. .+ +.. +..++ .+.+....+.+ .+++...
T Consensus 457 ~t~~~~~~kl~~~l~---~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~-~~~v~~d~l-~l~E~~~~kdn--~avi~~N 529 (1041)
T KOG2020|consen 457 DTEKIMTEKLAIQLD---GDEWSLHNLNRLCWAIGSISGRMLEDMEKKF-FVAVIRDLL-NLCERKRGKDN--KAVIASN 529 (1041)
T ss_pred hhhhhhhHhHHHHhh---HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHH-HHHHHHHHH-HHHHHhhcCCc--hhHHHHH
Confidence 11 1 122112221 1346799999999999988886654321 01 111 22222 22221111111 1466667
Q ss_pred HHHHHHhhHHHHHhCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhccc--CCCchH-HHHHHHHHHHH--hc
Q 005008 509 LADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI--DEPSNL-EILMWIGEALE--KR 581 (719)
Q Consensus 509 ~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l--~~p~~~-~~l~~~~~~l~--~~ 581 (719)
++..+|.|..|+..|..+|.++...+++.++. ..++..||.+|.++...|..+. ..+... +....+...+. ..
T Consensus 530 i~~vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~ 609 (1041)
T KOG2020|consen 530 IMYVVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE 609 (1041)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc
Confidence 89999999999999999999999999998874 5689999999999999999852 211111 11112222111 23
Q ss_pred CCChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 005008 582 HLPLEDEEEVVGAISLILGS-VSNKELKNNLLARLLSSSYEAIGKLIDGD 630 (719)
Q Consensus 582 ~l~~~~~~~l~eai~~vi~~-~p~~~~~~~~l~~l~~p~~~~l~~~~~~~ 630 (719)
.+.+..+...++++|.++.+ .+++.. ..+...++.-.-..+.+++-++
T Consensus 610 ~l~~~q~~~~~~al~~~V~~~~~~~~~-~~~~~~~~vl~~~~~~nii~~~ 658 (1041)
T KOG2020|consen 610 DLQPQQRHTFYEALGLMVSAEIDPAKA-ERLQSKLMVLPNRAWINIILQA 658 (1041)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCHhhH-HHHHhcccccchhhhcchhhcC
Confidence 45667889999999966654 444443 5666666666666666655444
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.8e-18 Score=189.44 Aligned_cols=604 Identities=15% Similarity=0.135 Sum_probs=355.9
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCC-
Q 005008 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL- 81 (719)
Q Consensus 3 ~~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l- 81 (719)
|+.++ +.+++.+-. .+|+..|+.|++.|.+++|.|....-+.++...+. .+..||.-||.-||+||.+.|..-
T Consensus 1 md~~~-l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~----~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQS-LLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDG----VPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred CChHH-HHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHhcCCccC
Confidence 44544 555555544 56789999999999999999999999999998775 367899999999999999999854
Q ss_pred --------ChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c-cCCChHHHHHHHhhhccCCCchhHHHHH
Q 005008 82 --------QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLE 151 (719)
Q Consensus 82 --------~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~-~-~W~~~i~~li~~l~~~~~~~~~~~~~L~ 151 (719)
+++++..+|+.++..+. .+|..+|.+|..++-.+...- + .||+.++.+-..++++ +.+.....|.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv---~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl 149 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIV---QVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ--DANHVYGALL 149 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc--chhhHHHHHH
Confidence 78999999999999886 368899999999997777654 4 6999999999999875 3345566666
Q ss_pred HHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccc
Q 005008 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (719)
Q Consensus 152 ~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~ 231 (719)
+|..|.--.. . ...++|.-+...+....|.+++...+.+...+. +...+...++|.|.+-+.+ +
T Consensus 150 ~l~qL~k~ye-~------k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~ 213 (1010)
T KOG1991|consen 150 CLYQLFKTYE-W------KKDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----E 213 (1010)
T ss_pred HHHHHHHHHh-h------ccccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----h
Confidence 6666554221 1 234566667777777899999999998877532 3456788999999999988 5
Q ss_pred cCcchhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCC-----h-------------hHHHHHhhhhhHHHchhhhh
Q 005008 232 ISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG-----L-------------PQALLCRVPFLKELLLLPAL 293 (719)
Q Consensus 232 ~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~-----~-------------~~~l~~~~~~l~~~~~~~a~ 293 (719)
+|... .+++.+...++.+..++.+.-+ + .+..+..+..+.++|.....
T Consensus 214 LP~~L--------------~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~ 279 (1010)
T KOG1991|consen 214 LPLEL--------------SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSL 279 (1010)
T ss_pred CCHHh--------------hCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccc
Confidence 66654 4556666777777777765411 0 01111112223334332111
Q ss_pred hc-CchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCC-CCchhhhhhHHHHHHHHHHHhccchhhhhh
Q 005008 294 TD-GDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPS-EDWEIADSTLQFWSTLASYILGLDASIAKN 371 (719)
Q Consensus 294 ~~-~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~-~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~ 371 (719)
.. +..++...+++-| ...+. ..++..+-.... -+ ....|-..++.| .+...+
T Consensus 280 ~~~~y~~Fa~~f~~n~-------~~~il------e~~lk~l~~~~~-~~yls~rvl~~~l~f----l~~~Vs-------- 333 (1010)
T KOG1991|consen 280 VVPEYKEFAQMFLKNF-------AQGIL------EVFLKILEQWRQ-QLYLSDRVLYYLLNF----LEQCVS-------- 333 (1010)
T ss_pred cchhhHHHHHHHHHHH-------HHHHH------HHHHHHHHHHHh-cccCCHHHHHHHHHH----HHHhcc--------
Confidence 11 1222222222211 11111 111111111111 00 011233334444 221111
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHH-Hh-------------HhhHHHHHHHHhcCchH--
Q 005008 372 KKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQF-RM-------------NLVELLVDICQLLRSAT-- 435 (719)
Q Consensus 372 ~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~-R~-------------~~~d~l~~~~~il~~~~-- 435 (719)
....+...+|++.-++...+--+..+.|+..+.|+. |-.+| |+ ...+++..++.-=|.+.
T Consensus 334 ~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~----DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~ 409 (1010)
T KOG1991|consen 334 HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE----DPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLP 409 (1010)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc----CHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhh
Confidence 136778889999777765544333333322223432 22233 21 22344444444333331
Q ss_pred ----HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHH-HHH--hccCchhhhhhHHHHHHHH
Q 005008 436 ----FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL-VAV--LSASRSEELKGFMHIVYRS 508 (719)
Q Consensus 436 ----~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~l-l~~--l~~~~~~~~~~~~~l~~~t 508 (719)
|+..++.+...++....+-++.|.||+.++++++.+.+... ....++. +.. +|....+- + .+|.++
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~---~~~~mE~flv~hVfP~f~s~~--g--~Lrara 482 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP---YKSQMEYFLVNHVFPEFQSPY--G--YLRARA 482 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc---hHHHHHHHHHHHhhHhhcCch--h--HHHHHH
Confidence 22333333222222445799999999999999988875432 2334432 211 23322221 1 367775
Q ss_pred HHHHHHhhHHHHHhCccchHHHHHHHHHhcC-cCc--hHHHHHHHHHHHHHHhhcc---cCCCchHHHHHHHHHHHHhcC
Q 005008 509 LADVIGSYSKWISAFQTNARPLLLFLAAGIS-EAV--SSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRH 582 (719)
Q Consensus 509 ~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~-~~~--v~~~Aa~al~~lc~~c~~~---l~~p~~~~~l~~~~~~l~~~~ 582 (719)
||++++|++-=-.+|..+..++....++|. +++ |+.-||-|++.|.+.|... +. | +.+.+++-.-.+. ..
T Consensus 483 -c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~-~-hvp~~mq~lL~L~-ne 558 (1010)
T KOG1991|consen 483 -CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS-A-HVPPIMQELLKLS-NE 558 (1010)
T ss_pred -HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh-h-hhhHHHHHHHHHH-Hh
Confidence 899999995333467889999999999998 444 8999999999999999854 21 2 4443332211111 12
Q ss_pred CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHh-Hhhhhhhhc
Q 005008 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRG-LYRMGTVFS 661 (719)
Q Consensus 583 l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~f~ 661 (719)
...++...+++. ++...+.+ . .++--.+++-+.+...++++.....+...+.. +.++.| |.-+.++..
T Consensus 559 ~End~Lt~vme~---iV~~fseE-l-sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk------~iaA~GiL~Ti~Til~ 627 (1010)
T KOG1991|consen 559 VENDDLTNVMEK---IVCKFSEE-L-SPFAVELCQNLAETFLKVLQTSEDEDESDDDK------AIAASGILRTISTILL 627 (1010)
T ss_pred cchhHHHHHHHH---HHHHHHHh-h-chhHHHHHHHHHHHHHHHHhccCCCCccchHH------HHHHHHHHHHHHHHHH
Confidence 244445555554 45555444 2 45555778888888888888632211111110 112222 222455555
Q ss_pred ccccCCCCCCCCCch-HHHHH-HHHHHHHHHHHHhhhccccHHHHHHHHHHH
Q 005008 662 HLPVPLPTNPAGDDP-IFALL-RVFWPMLEKLFRSEHMENGNLSTAACRALS 711 (719)
Q Consensus 662 ~l~~~~~~~~~~~~p-~~~~~-~~~~p~l~~i~~~~~~~~~~vie~~c~~~~ 711 (719)
++.. || ++..+ ..+.|++..++.+ .-.++-|.+|.+.-
T Consensus 628 s~e~---------~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 628 SLEN---------HPEVLKQLEPIVLPVIGFILKN---DITDFYEELLEIVS 667 (1010)
T ss_pred HHhc---------cHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHh
Confidence 4432 55 33333 4456666666653 33467777776543
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.90 E-value=3.7e-19 Score=182.78 Aligned_cols=522 Identities=13% Similarity=0.096 Sum_probs=316.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHH--HHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhh-----------
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~a--W~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~----------- 75 (719)
+.+..+.-.-+||+..|..|++.|.++|+.+-. -.+..+.|...+ +..+.|..|+.+||+-+.
T Consensus 6 f~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 6 FRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred HHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 444444411268888999999999999987643 333444454443 467999999999999886
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhhccCCChHHHHHHHhhhccCCCchhHHHHHHH
Q 005008 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPP--QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (719)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~--~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~~~~~~~~~~~~L~~L 153 (719)
.+|-.++.|.++++|...+..|.+. .|+ ...-+|..++|.+-+....||+++.++.......+ ..+.....|.++
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s~--epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eq-p~~~k~~sl~~~ 158 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKSP--EPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQ-PVSGKCESLGIC 158 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccC-chHhHHHHHHHH
Confidence 3499999999999999999988632 222 13344444444444444479999999999886543 223556677888
Q ss_pred hhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccC
Q 005008 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (719)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (719)
...+|-.. + +.+.+....++--+...-..+ + +...++..+|+|+-.-+-+... ++-
T Consensus 159 gy~ces~~----------P-------e~li~~sN~il~aiv~ga~k~---e---t~~avRLaaL~aL~dsl~fv~~-nf~ 214 (858)
T COG5215 159 GYHCESEA----------P-------EDLIQMSNVILFAIVMGALKN---E---TTSAVRLAALKALMDSLMFVQG-NFC 214 (858)
T ss_pred HHHhhccC----------H-------HHHHHHhhHHHHHHHHhhccc---C---chHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 88877442 1 234444444444443333322 1 3467899999999864333210 121
Q ss_pred cchhcccchHHHHHHhcCC--CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHH
Q 005008 234 QGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (719)
Q Consensus 234 ~~~~~~~~ll~~~~~~l~~--~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~ 311 (719)
.+ .....+++.+++.-+. .++.-+|.-|++.|+..+.++++..+++
T Consensus 215 ~E-~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~------------------------------- 262 (858)
T COG5215 215 YE-EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN------------------------------- 262 (858)
T ss_pred ch-hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 11 2334466666666553 3456677777777665443333322211
Q ss_pred HHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccc--hhhhhhhh-hhHHhhHHHHHHHHH
Q 005008 312 GQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD--ASIAKNKK-HVEDMFFSVFSALLD 388 (719)
Q Consensus 312 ~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~--~~~~~~~~-~~~~~~~~~~~~Lv~ 388 (719)
.+..+.-+.+..| +++|...++|||..++++-.+.+ ....++.| +.....+.-...+++
T Consensus 263 ----------------aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP 324 (858)
T COG5215 263 ----------------ALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLP 324 (858)
T ss_pred ----------------HHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHH
Confidence 2222333344444 57899999999998887531111 00000001 111222233444556
Q ss_pred HHHHHhcc-CCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh
Q 005008 389 ALLLRAQV-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVV 467 (719)
Q Consensus 389 ~l~~k~~~-p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i 467 (719)
.+++-+.- .+|-..|+|+. -...+-+|+-...+.|+ .++..+..-. ++...+.+|..+||+..++|++
T Consensus 325 ~lL~LL~~q~ed~~~DdWn~---------smaA~sCLqlfaq~~gd-~i~~pVl~Fv-Eqni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 325 ELLSLLEKQGEDYYGDDWNP---------SMAASSCLQLFAQLKGD-KIMRPVLGFV-EQNIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHhcCCCccccccch---------hhhHHHHHHHHHHHhhh-HhHHHHHHHH-HHhccCchhhhHHHHHHHhhhh
Confidence 66665443 44433344542 23445566555555554 3444443321 1122567899999999999999
Q ss_pred hhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--Ccc-chHHHHHHHHHhcCc-Cch
Q 005008 468 SEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE-AVS 543 (719)
Q Consensus 468 ~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~--~p~-~L~~vl~~l~~~l~~-~~v 543 (719)
-++-.+..- .+.+.+.++.+.+...+..- .+..+|+ |++|+.++++.. +|+ +|+..++..+.|+.| |..
T Consensus 394 m~gp~~~~l---T~~V~qalp~i~n~m~D~~l---~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~ 466 (858)
T COG5215 394 MHGPCEDCL---TKIVPQALPGIENEMSDSCL---WVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFR 466 (858)
T ss_pred hcCccHHHH---HhhHHhhhHHHHHhccccee---ehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchH
Confidence 887654322 23455566555432221111 2556664 999999999986 464 899999999999886 888
Q ss_pred HHHHHHHHHHHHHHhhccc------CCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 005008 544 SNACASALRKICEDASALI------DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (719)
Q Consensus 544 ~~~Aa~al~~lc~~c~~~l------~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~ 617 (719)
...++.++.+|.+.-++.. ..++|+.++..+...-....-....|..+++++|.+|.-.|..- .+.+-.+.+
T Consensus 467 ~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V--~~~~a~~~~ 544 (858)
T COG5215 467 SINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV--SDILAGFYD 544 (858)
T ss_pred HhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH--HHHHHHHHH
Confidence 9999999999986654322 11334444444443211122245679999999999998877653 577888999
Q ss_pred HHHHHHHhhhcccC
Q 005008 618 SSYEAIGKLIDGDN 631 (719)
Q Consensus 618 p~~~~l~~~~~~~~ 631 (719)
-+..+|.++++-..
T Consensus 545 ~~~~kl~~~isv~~ 558 (858)
T COG5215 545 YTSKKLDECISVLG 558 (858)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998877543
No 11
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.68 E-value=3.3e-16 Score=144.88 Aligned_cols=146 Identities=27% Similarity=0.398 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHH
Q 005008 104 PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (719)
Q Consensus 104 ~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~ 181 (719)
|++|++|+|.+++.++.+.+ .||++++++++.+++ ++.+...+|++|+.++||+.+..+. .+...+|..+.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~--~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRS--SLSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCC--HSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHH
Confidence 57899999999999999985 699999999999877 3567889999999999999863222 3678899999999
Q ss_pred HHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCChHHHHHH
Q 005008 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (719)
Q Consensus 182 l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~ 261 (719)
+..+.+.|++++.++++...+. ....+...+|+|+.+|+.+ ++.+.+.++++++.+|+.|+++++++.|+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~~-----~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWISW-----IPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTTT-----S-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHHh-----CCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999886431 1257889999999999997 577777788899999999999999999999
Q ss_pred HH
Q 005008 262 VL 263 (719)
Q Consensus 262 ~l 263 (719)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 12
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1e-11 Score=134.08 Aligned_cols=536 Identities=13% Similarity=0.101 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCC----
Q 005008 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (719)
Q Consensus 5 ~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~---- 80 (719)
.++++.+.+..-. .|||+.|+-|++.|++.+..+.-=-....|+..+. .+.++|.-||..+|+-|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~----~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ----QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccC----cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 5666777776643 67889999999999999876443334556666554 36799999999999999999974
Q ss_pred ---CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c-cCCChHHHHHHHhhhccCCCchhHHHHHHHhh
Q 005008 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (719)
Q Consensus 81 ---l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~-~-~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~ 155 (719)
+.+++++.+|..++..+. +.+..|..+|+.+++.++-+- + .||+.++++++.++++ +-+.....|..-..
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl---~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~tahs 152 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLML---SSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVTAHS 152 (960)
T ss_pred ccccchhHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHHHHH
Confidence 456788999998888665 356789999999999999764 4 5999999999999863 32222222222111
Q ss_pred hhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcc
Q 005008 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (719)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~ 235 (719)
-+-..|. ...+++--.+++..+...+.....++.+.++...... ++ .. .++.|.+.
T Consensus 153 ---iFkr~R~--efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~----~~---~l~~lf~v--------- 208 (960)
T KOG1992|consen 153 ---IFKRYRP--EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---ND----AA---ALNILFGV--------- 208 (960)
T ss_pred ---HHHhcCc--ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cc----hh---HHHHHHHH---------
Confidence 1111110 0112222333344444445555555555444322110 01 11 44556552
Q ss_pred hhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhH-HHHHhhhhhHHH--chhhhhhcCchh------HHhHHHH
Q 005008 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ-ALLCRVPFLKEL--LLLPALTDGDEK------VIGGLAC 306 (719)
Q Consensus 236 ~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~-~l~~~~~~l~~~--~~~~a~~~~d~e------~~~~l~~ 306 (719)
. -|+.-+|..|+-.++ +++++ .+-.++-.+... +.+..+.+++++ .-..+|.
T Consensus 209 l----ll~~klfysLn~QDi---------------PEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 209 L----LLICKLFYSLNFQDI---------------PEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred H----HHHHHHHHhhhcccc---------------hHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHH
Confidence 1 144455555553222 11111 111111111110 111122222211 2246677
Q ss_pred HHHHHHHhchHHHHhCChh-HHHHHHHHHhhccCCCCCch-hhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHH-
Q 005008 307 LMSEIGQAAPSLIVEASPE-ALALADALLSCVAFPSEDWE-IADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF- 383 (719)
Q Consensus 307 l~~~~~e~~~~~l~~~~~~-~~~ll~~ll~~~~~p~~d~~-v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~- 383 (719)
+++-..+.|-.-+..--++ +.....++...+.+| .|+ .+.-++.|.....+. ..|..+|
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~--kyD~Lvs~Al~FLt~V~~r----------------~~y~~~F~ 331 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDT--KYDYLVSKALQFLTSVSRR----------------PHYAELFE 331 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHhh----------------hhhHhhhc
Confidence 7776666665444321112 234556666666665 454 445677886654442 1222222
Q ss_pred -HHHHHHHHHHhccCCCCCCCCCCCCC-CchHHH-------------HHhHhhHHHHHHHHhcCch--HHHHHHHHHhhc
Q 005008 384 -SALLDALLLRAQVDESSFNDDGMVDL-PDGLVQ-------------FRMNLVELLVDICQLLRSA--TFIQKVFFGSWG 446 (719)
Q Consensus 384 -~~Lv~~l~~k~~~p~~~~~~~~~~d~-~d~f~~-------------~R~~~~d~l~~~~~il~~~--~~l~~~~~~~~~ 446 (719)
.+.+..+..++..|.-..- +.|.|- +|+-.+ -|+.+.|+++..+..-... .++..-.++...
T Consensus 332 ~~~vl~~i~e~VvlpN~~lR-~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~ 410 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLILR-EEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLD 410 (960)
T ss_pred chHHHHHHHHhhcccccccc-hhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3455666777777643221 000000 111122 2344556776666554222 123322333222
Q ss_pred -C-CCCCCChhHHHHHHHHHHHhhhh-------cccCCcccchhHHH--HHHHHhcc---CchhhhhhHHHHHHHHHHHH
Q 005008 447 -S-ANVPIPWKEVETKLFALNVVSEV-------VLQEGQAFDFSVIM--QLVAVLSA---SRSEELKGFMHIVYRSLADV 512 (719)
Q Consensus 447 -~-~~~~~~W~~~Ea~L~~l~~i~e~-------~~~~~~~~~l~~i~--~ll~~l~~---~~~~~~~~~~~l~~~t~~~~ 512 (719)
. .+++.+|...+.++|.+.+++-. +...++-.++...+ ++++.|.+ .++| .+++.+ +.
T Consensus 411 ~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~p------ilka~a-IK- 482 (960)
T KOG1992|consen 411 QYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFP------ILKADA-IK- 482 (960)
T ss_pred HhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcccccc------chhhcc-cc-
Confidence 1 24677899999999999998843 22222211122111 12233322 2221 133322 22
Q ss_pred HHhhHHHHHhC--ccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhc---ccCC-----CchHHHHHHHHHHHHh
Q 005008 513 IGSYSKWISAF--QTNARPLLLFLAAGISEA--VSSNACASALRKICEDASA---LIDE-----PSNLEILMWIGEALEK 580 (719)
Q Consensus 513 ig~y~~~~~~~--p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~---~l~~-----p~~~~~l~~~~~~l~~ 580 (719)
|.--|.++ |+++...++-+.+++..+ .|-..||.++.++-.-|.. .+.+ |+....+.++.+.+..
T Consensus 483 ---y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~ 559 (960)
T KOG1992|consen 483 ---YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL 559 (960)
T ss_pred ---eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC
Confidence 33334444 678999999999999864 3778899999888755554 2322 2233344555554432
Q ss_pred cCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccC
Q 005008 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDN 631 (719)
Q Consensus 581 ~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~ 631 (719)
+ ...+-+.++++|-++++..+.. .....++++.+|.+++....
T Consensus 560 p--~~~EneylmKaImRii~i~~~~------i~p~~~~~l~~Lteiv~~v~ 602 (960)
T KOG1992|consen 560 P--GKAENEYLMKAIMRIISILQSA------IIPHAPELLRQLTEIVEEVS 602 (960)
T ss_pred C--cccccHHHHHHHHHHHHhCHHh------hhhhhhHHHHHHHHHHHHHh
Confidence 2 2256789999999999987554 33455666666666666554
No 13
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.3e-10 Score=119.59 Aligned_cols=599 Identities=13% Similarity=0.054 Sum_probs=293.7
Q ss_pred CCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCC-----ChhhHHHHHHHH
Q 005008 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (719)
Q Consensus 19 ~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l-----~~~~~~~Lr~~L 93 (719)
+.|+..|+.|+..|.+++|.|.....+..++..+.. +.++|.-||.-+++||.+.|+.. +++.+...|+.+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~----~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEG----DLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccC----CchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 678889999999999999999999999999987753 57999999999999999999973 345666666666
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHhhhc---cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccC
Q 005008 94 LVAAKR-FSSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (719)
Q Consensus 94 l~~l~~-~~~~~~~v~~kL~~ala~l~~~~~---~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~ 169 (719)
++.+.. +-++|...|+.+...+..++-.-. -|+ ..+-....+.++ +...+...|..+..+.. .-+.+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl~elfk----ayRwk-- 160 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCLEELFK----AYRWK-- 160 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHHHHHHH----HHhhh--
Confidence 665543 335666666667655554443221 266 556666666553 34455666666554332 22221
Q ss_pred CChHHHHHHHHHHHh-chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHH
Q 005008 170 ISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFN 248 (719)
Q Consensus 170 l~~~~r~~~~~~l~~-~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~ 248 (719)
.. .+++....+.. -.|.+.++=..+...+ +. ...++...+|+.+++-+-+ ++|.....
T Consensus 161 ~n--deq~di~~li~alfpile~~g~nl~s~~-ny----~s~e~l~LILk~fKsvcy~----~LP~~lsa---------- 219 (970)
T COG5656 161 YN--DEQVDILMLITALFPILEKVGGNLESQG-NY----GSVETLMLILKSFKSVCYY----SLPDFLSA---------- 219 (970)
T ss_pred cc--chHhhHHHHHHHhhHHHHHHhhccccCC-ch----hHHHHHHHHHHHHHHHHHh----hCCHHHcc----------
Confidence 22 22233333333 3455554444433322 21 1346677889999888776 45554322
Q ss_pred hcCCCChHHHHHHHHHHHhhcCC---------------Chh---HHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHH
Q 005008 249 SLQVQSSFDVAIEVLVELVGRHE---------------GLP---QALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (719)
Q Consensus 249 ~l~~~~~~~~a~~~l~eil~~~~---------------~~~---~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~ 310 (719)
++.+..++.....++++.- ..+ +.-+..+..+..++......-....+...++..+..
T Consensus 220 ----~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~ 295 (970)
T COG5656 220 ----IETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPM 295 (970)
T ss_pred ----chhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 2222233333333333321 000 111111112222221111111111112222222222
Q ss_pred HHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHH
Q 005008 311 IGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDAL 390 (719)
Q Consensus 311 ~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l 390 (719)
+.+.+.+.+. .-.. | ..=.+...+.|...|.+.-. + ..+.+...+|++.-++...
T Consensus 296 il~tffkqie--------------~wgq--g-qLWlsd~~LYfi~~Fve~cv--~------~d~tw~l~ePhlq~ii~~v 350 (970)
T COG5656 296 ILATFFKQIE--------------EWGQ--G-QLWLSDIELYFIDFFVELCV--D------ADQTWRLMEPHLQYIISGV 350 (970)
T ss_pred HHHHHHHHHH--------------Hhhc--C-CeecchHHHHHHHHHHHHHh--h------hHhhHhhhccHHHHHHHhh
Confidence 2222222221 1111 1 11134445555555555321 1 1256778889986655554
Q ss_pred HHHhccCCCCCCCCCCCCCCchHHHHH---------hHhh--HHHHHHHHhcCchHHHHHHH----HHhhcC---CCCCC
Q 005008 391 LLRAQVDESSFNDDGMVDLPDGLVQFR---------MNLV--ELLVDICQLLRSATFIQKVF----FGSWGS---ANVPI 452 (719)
Q Consensus 391 ~~k~~~p~~~~~~~~~~d~~d~f~~~R---------~~~~--d~l~~~~~il~~~~~l~~~~----~~~~~~---~~~~~ 452 (719)
+--+-.+.++..+.|+. |.++|-.-. -|++ +++.-+ ..=+.+..++-++ ..+... +..-.
T Consensus 351 IfPllc~see~eElfEn-Dp~eyirry~df~d~g~spdlaal~fl~~~-~sKrke~TfqgiLsf~~sil~qsaa~psn~d 428 (970)
T COG5656 351 IFPLLCLSEEEEELFEN-DPDEYIRRYYDFFDNGLSPDLAALFFLIIS-KSKRKEETFQGILSFLLSILGQSAATPSNID 428 (970)
T ss_pred hhhhcCCChhhHHHHhc-CHHHHHHHhcchhcCCCChhHHHHHHHHHH-hcccchhhhhhHHHHHHHHHhcccCCCCccc
Confidence 44333333322222322 223332111 1222 111111 1112222232222 222111 11123
Q ss_pred ChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHH-HH--hccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHH
Q 005008 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLV-AV--LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP 529 (719)
Q Consensus 453 ~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll-~~--l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~ 529 (719)
.-++.|.||+.+.++..-+.+. ++ +..+++.+ .. +|....+ .+| ++.+ +|.++++|++-++. +..+..
T Consensus 429 narq~egalr~lasi~s~itk~-sp--~an~me~fiv~hv~P~f~s~--ygf--L~Sr-ace~is~~eeDfkd-~~ill~ 499 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKM-SP--AANVMEYFIVNHVIPAFRSN--YGF--LKSR-ACEFISTIEEDFKD-NGILLE 499 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccC-ch--HHHHHHHHHHHHhhHhhcCc--ccc--hHHH-HHHHHHHHHHhccc-chHHHH
Confidence 5789999999999999955543 32 45666632 21 2322221 122 4455 48999999887765 445666
Q ss_pred HHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHH-HHccCCchH
Q 005008 530 LLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL-ILGSVSNKE 606 (719)
Q Consensus 530 vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~-vi~~~p~~~ 606 (719)
+++....++.+.. |+-.||.|+.-|..+-..+.....+.+..++-.-.| +.....+....+++++.. ....+.+-
T Consensus 500 aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL-Sn~feiD~LS~vMe~fVe~fseELspf- 577 (970)
T COG5656 500 AYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL-SNTFEIDPLSMVMESFVEYFSEELSPF- 577 (970)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh-cccccchHHHHHHHHHHHHhHHhhchh-
Confidence 6777777776532 789999999988855443221111333322211111 223344445555555322 21122111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhh-hhhhhcccccCCCCCCCCCchHHH-HHHHH
Q 005008 607 LKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR-MGTVFSHLPVPLPTNPAGDDPIFA-LLRVF 684 (719)
Q Consensus 607 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~f~~l~~~~~~~~~~~~p~~~-~~~~~ 684 (719)
+ ++....+.+-++.-.+.++.+.+......+ +. +.++.|+-+ +.++.-+++. .+. ++. .-+..
T Consensus 578 a-~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD--DK----qmaasGiL~T~~smiLSlen-------~p~-vLk~le~sl 642 (970)
T COG5656 578 A-PELAGSLVRQFLKIAQSLLENSSDTSSVVD--DK----QMAASGILRTIESMILSLEN-------RPL-VLKYLEVSL 642 (970)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCcccccccc--HH----HHHHHHHHHHHHHHHHhccc-------chH-HHHHHHHHH
Confidence 0 222333333333333334443322111111 11 234444444 4555555443 122 343 34778
Q ss_pred HHHHHHHHHhhhccccHHHHHHHHHHH
Q 005008 685 WPMLEKLFRSEHMENGNLSTAACRALS 711 (719)
Q Consensus 685 ~p~l~~i~~~~~~~~~~vie~~c~~~~ 711 (719)
.|+++-|+.+ .-.++...+|+++.
T Consensus 643 ypvi~Filkn---~i~dfy~Ea~dild 666 (970)
T COG5656 643 YPVISFILKN---EISDFYQEALDILD 666 (970)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHh
Confidence 8999998864 44566666666654
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.43 E-value=1.1e-08 Score=112.34 Aligned_cols=595 Identities=14% Similarity=0.100 Sum_probs=301.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCC-------
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL------- 81 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l------- 81 (719)
+...+.+.. ++|+..|.+|+..|.++..+++--.....+..+.. .+...|.+|+..|++-|.++|...
T Consensus 6 ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 6 IIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD----ASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc----cCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 444455544 78899999999999999998873333333443332 357899999999999999999854
Q ss_pred ---ChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c-cCCChHHHHHHHhhhccCCCchhHHHHHHHhhh
Q 005008 82 ---QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (719)
Q Consensus 82 ---~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~-~-~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l 156 (719)
.++.+..+|+.|++.+. ..++.+++-.+.+++.++--. | .||+.++-+..+++++ +.++....+++|..+
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~--n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG--NENSIHGAMRVLAEL 155 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc--chhhhhhHHHHHHHH
Confidence 44678888999988775 456778888888888887543 4 5999999999988763 455667777777766
Q ss_pred hhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcch
Q 005008 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (719)
Q Consensus 157 ~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~ 236 (719)
-.|+.+.. +....+.++.-...+...... .....+..+. . +
T Consensus 156 ~~ev~~ee-----------------~~~~~~~~l~~m~~~f~~~~~-----~s~~~~~~aa---~--~------------ 196 (1005)
T KOG2274|consen 156 SDEVDVEE-----------------MFFVGPVSLAEMYRIFALTIV-----YSIITRLGAA---R--G------------ 196 (1005)
T ss_pred HHHHHHHH-----------------Hhcccccchhhhhhhhhhccc-----cchhHHHHhh---h--h------------
Confidence 66653110 000111111111100000000 0001111110 0 0
Q ss_pred hcccchHHHHHHhcCC-CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhc-CchhHHhHHHHHHHHHHHh
Q 005008 237 LAAHPLLNFVFNSLQV-QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTD-GDEKVIGGLACLMSEIGQA 314 (719)
Q Consensus 237 ~~~~~ll~~~~~~l~~-~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~-~d~e~~~~l~~l~~~~~e~ 314 (719)
+++..++..+.+ .+...+... .++..+++..+....... .... +|.-....+.+.++.++++
T Consensus 197 ----~lf~sc~~li~~~~e~~~~~~~----------~~~s~~l~~~~~~l~h~l--~~~~g~~~~~~~eilk~~t~l~~n 260 (1005)
T KOG2274|consen 197 ----KLFTSCLTLITNVEEVWAEHVK----------VFLSQILNQFMDILEHPL--QRNDGSDFSLRMEILKCLTQLVEN 260 (1005)
T ss_pred ----HHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhh--cccccchHHHHHHHHHHHHHHHHh
Confidence 111111111110 000000000 112222222222111111 1111 2233445667788888888
Q ss_pred chHHHHhCCh-h---HHHHHHHHHh-----hccCCCCCchh-------h-------hhhHHHHHHHHHHHhccchhhhhh
Q 005008 315 APSLIVEASP-E---ALALADALLS-----CVAFPSEDWEI-------A-------DSTLQFWSTLASYILGLDASIAKN 371 (719)
Q Consensus 315 ~~~~l~~~~~-~---~~~ll~~ll~-----~~~~p~~d~~v-------~-------~~~~~FW~~l~e~l~~~~~~~~~~ 371 (719)
++.++..-.. . ....+..++. -..+-+.+++. . -..++|-..+..... .
T Consensus 261 fp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~-~------- 332 (1005)
T KOG2274|consen 261 FPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRF-L------- 332 (1005)
T ss_pred hHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHH-H-------
Confidence 8777643110 0 1111111111 11111111111 1 134667666554321 1
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHhccCCC----------CCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHH
Q 005008 372 KKHVEDMFFSVFSALLDALLLRAQVDES----------SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVF 441 (719)
Q Consensus 372 ~~~~~~~~~~~~~~Lv~~l~~k~~~p~~----------~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~ 441 (719)
....+..+..++..++.-++.++. .+. |+.+ +. ..-|..+.|.+..+..-.|... +..++
T Consensus 333 ----~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV--~dEd--~~-~~~~~~~rd~~~~v~~~f~~~~-i~~i~ 402 (1005)
T KOG2274|consen 333 ----SKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFV--ADED--DG-YTARISVRDLLLEVITTFGNEG-INPIQ 402 (1005)
T ss_pred ----HHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhh--ccCC--CC-chhhhhHHHHHHHHHHhccchh-hhHHH
Confidence 111111222333333333333322 221 2111 11 4457778888888877777652 22222
Q ss_pred HH----hhc-----CCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHH-HHhccCchhhhhhHHHHHHHHHHH
Q 005008 442 FG----SWG-----SANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLV-AVLSASRSEELKGFMHIVYRSLAD 511 (719)
Q Consensus 442 ~~----~~~-----~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll-~~l~~~~~~~~~~~~~l~~~t~~~ 511 (719)
+. +.. ..+.+.-|-..|+++++..++..+..- .+. +..+...+ ..+..+..|. +..+ +++
T Consensus 403 ~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~-dd~--l~~l~~~~~~~l~~~e~P~------Ll~R-a~~ 472 (1005)
T KOG2274|consen 403 DAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDAN-DDK--LIELTIMIDNGLVYQESPF------LLLR-AFL 472 (1005)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcch-HHH--HHHHHHHHHhhcccccCHH------HHHH-HHH
Confidence 21 111 012334599999999999988732211 111 22333333 2334333332 3333 469
Q ss_pred HHHhhHHHHHhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHH
Q 005008 512 VIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEV 591 (719)
Q Consensus 512 ~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l 591 (719)
+++.|++=+-.+|+++...++..+.+++-......+..|.+.+|--|+.+...| ..|.++...-.+. +..+.+..--+
T Consensus 473 ~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~-~~p~ild~L~qla-s~~s~evl~ll 550 (1005)
T KOG2274|consen 473 TISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS-LQPMILDGLLQLA-SKSSDEVLVLL 550 (1005)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc-cchHHHHHHHHHc-ccccHHHHHHH
Confidence 999888877778999999999999888753333444444555555566665433 5555555443332 23356778899
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhH-HHHH------------------------
Q 005008 592 VGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY-TQIL------------------------ 646 (719)
Q Consensus 592 ~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~-~~~~------------------------ 646 (719)
+|+++.++.--|.. ...++..+.|..-.+-......+. .-....+. .+++
T Consensus 551 mE~Ls~vv~~dpef---~as~~skI~P~~i~lF~k~s~DP~--V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~ 625 (1005)
T KOG2274|consen 551 MEALSSVVKLDPEF---AASMESKICPLTINLFLKYSEDPQ--VASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLN 625 (1005)
T ss_pred HHHHHHHhccChhh---hhhhhcchhHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCc
Confidence 99999998765433 223444444444333332222110 00000000 0000
Q ss_pred ------HHHHHhHhhhhhhhcccccCCCCCCCCCchHH-HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Q 005008 647 ------SSATRGLYRMGTVFSHLPVPLPTNPAGDDPIF-ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (719)
Q Consensus 647 ------~~~~~~l~~l~~~f~~l~~~~~~~~~~~~p~~-~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~ 715 (719)
..+.-+++-|+++.|. .+.|.- .+...+.|.+-++.- +..|.+.++..-.|+|.-+.
T Consensus 626 ~~~~~~~l~~~aidvLttvvr~----------tp~pL~~~l~~~~FpaVak~tl--HsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 626 ADKAPAGLCAIAIDVLTTVLRN----------TPSPLPNLLICYAFPAVAKITL--HSDDHETLQNATECLRALIS 689 (1005)
T ss_pred ccccCchhhHHHHHHHHHHHhc----------CCCCccHHHHHHHhHHhHhhee--ecCChHHHHhHHHHHHHHHh
Confidence 0111123333333332 233332 444778888888873 78999999999999987653
No 15
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=8e-07 Score=94.62 Aligned_cols=298 Identities=14% Similarity=0.135 Sum_probs=196.4
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCC
Q 005008 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (719)
Q Consensus 3 ~~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~ 82 (719)
|+..++++..-..||.+.|+..|.+|++-|.+|..||+.-+-|..||..++.| ..+..|+.+|-..+. +-..+|
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~p-----Ys~mlAst~L~Klvs-~~t~lp 74 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYP-----YSQMLASTCLMKLVS-RKTPLP 74 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCc-----hHHHHHHHHHHHHHc-CCCCCc
Confidence 55889999999999999999999999999999999999999999999988654 778888888875555 445899
Q ss_pred hhhHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhc--------cCCChHHHHHHHhhhccCCCchhHHHHHHH
Q 005008 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAV--------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (719)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~--------~W~~~i~~li~~l~~~~~~~~~~~~~L~~L 153 (719)
-+++..||+.+++++..-. .-+++|...||+.+|.+...-+ ...++|.++...++.+ +.....+.+.+|
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~iL 152 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQIL 152 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHHHHHH
Confidence 9999999999999997522 1247899999999988876532 1235677777766653 356788999999
Q ss_pred hhhhhccccccccccCCChHHHHHHHHHHHh-chhHHHHHHHHHhhcccCCCCC-----cchhhhHHHHHHHHH-HHHHc
Q 005008 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVP-----VQLHDRNRKILRCLL-SWVRA 226 (719)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~vl~~l~~~l~~~~~~~~~-----~~~~~l~~~~l~c~~-sWi~~ 226 (719)
..|..|+...+.. .+..+.+++...++. ..-+|+.+-.+.+....+-+.. .-...+...+++|+. -+|.-
T Consensus 153 sqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 153 SQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 9999999654432 344444444444444 2345555544444443211110 011234455666664 12221
Q ss_pred c--------cccccCcc---hhcccchHHHHHHhcCC--CChHHHHHHHHHHHhhcCC---------ChhHHHHHhhhhh
Q 005008 227 G--------CFTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE---------GLPQALLCRVPFL 284 (719)
Q Consensus 227 ~--------~~~~~~~~---~~~~~~ll~~~~~~l~~--~~~~~~a~~~l~eil~~~~---------~~~~~l~~~~~~l 284 (719)
. |...+|.+ .+..+..+++.|+..+. +++.+.|++|++.+.+-.+ .+.+.+..++..+
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRI 309 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1 00012222 12345577888887773 5778999999998876433 2445566555442
Q ss_pred HHHchhhhhhcCchhHHhHHHHHHHHHHHhc
Q 005008 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAA 315 (719)
Q Consensus 285 ~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~ 315 (719)
.+ + ...-.|.+..+.+||++.-+-.+|
T Consensus 310 l~---n-p~~LsD~~nyHeFCRllaRlktNY 336 (1082)
T KOG1410|consen 310 LE---N-PQGLSDPANYHEFCRLLARLKTNY 336 (1082)
T ss_pred Hh---C-CcCCCCcchHHHHHHHHHHHHhhh
Confidence 22 1 222335666778888887664444
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=5.3e-05 Score=82.89 Aligned_cols=172 Identities=17% Similarity=0.130 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccC-----CCCh
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQS 83 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~-----~l~~ 83 (719)
|.+.++... ++|+..++.|++.|.+..+.|........+..+.+ .+..+|..|+.-+|+-|.+.|. ++|+
T Consensus 2 vvq~Lq~At-s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t----~dv~vRWmAviyfKNgIdryWR~~~~~sl~~ 76 (978)
T KOG1993|consen 2 VVQVLQQAT-SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKT----NDVSVRWMAVIYFKNGIDRYWRRNTKMSLPP 76 (978)
T ss_pred HHHHHHHhc-CCCcccchhHHHHHHhhccCCcHHHHHHHHHhccc----cceeeeeehhhhHhcchhHHhhcCCcccCCH
Confidence 455666654 78888999999999999999999988888876553 4689999999999999998886 5899
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hc-cCCChHHHHHHHhhhccCCCc--hhHHHHHHHhhhhhc
Q 005008 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDN--GNMAVLEMLTVLPEE 159 (719)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~-~~-~W~~~i~~li~~l~~~~~~~~--~~~~~L~~L~~l~EE 159 (719)
|.+..||..++.++. +.++.+..|.++.+|.+|.- +| .||+.+++++..+++..+.++ ...-+|-.|-.+--+
T Consensus 77 EEK~~iR~~Ll~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 77 EEKDFIRCNLLLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 999999999988774 44567888888888888854 44 699999999999987532222 111122222222222
Q ss_pred cccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhh
Q 005008 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSD 198 (719)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~ 198 (719)
+++ .|-.+-++.+..-++.+++++.-.+-
T Consensus 154 Lat----------~RL~a~rk~F~el~~~I~~~l~~~l~ 182 (978)
T KOG1993|consen 154 LAT----------KRLLADRKAFYELAPEILTILAPILW 182 (978)
T ss_pred HHH----------hHHhhhhHHHHHHhHHHHHHHHHHHh
Confidence 322 22223334555567777776655443
No 17
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.87 E-value=5.8e-09 Score=84.19 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=61.8
Q ss_pred HHHHHHHHhcC-hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccC--------CCChhhHHHHHHHHHHHHH
Q 005008 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (719)
Q Consensus 28 A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~--------~l~~~~~~~Lr~~Ll~~l~ 98 (719)
|+++|++|+++ |++|..+..++.+.. .+.++|+||+.+|+++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 899999999996653 3679999999999999999999 9999999999999999874
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.095 Score=60.99 Aligned_cols=302 Identities=16% Similarity=0.141 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCC--CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHH
Q 005008 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKEL 287 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~--~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~ 287 (719)
++++.+.-+.+..-.+. .+|. ....+++.+|++..+ +..++.|.-.|..+...-..-.+.-+.. +...
T Consensus 94 ~~vr~k~~dviAeia~~----~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~---l~~l 163 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARN----DLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD---LLRL 163 (1075)
T ss_pred hHHHHHHHHHHHHHHHh----cccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH---HHHH
Confidence 45666666666655553 2333 466799999999984 5678888877765544221101111111 1111
Q ss_pred chhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCC---hhHHHHHHHHHhhccC--CCCCchhhhhhHHHHHHHHHHHh
Q 005008 288 LLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAF--PSEDWEIADSTLQFWSTLASYIL 362 (719)
Q Consensus 288 ~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~ll~~~~~--p~~d~~v~~~~~~FW~~l~e~l~ 362 (719)
+. +.+.+.+.-....-.+.+.++++... .+. ..+..++.-|+..+.- +..|.+.+..+|+-...|.+.
T Consensus 164 f~-q~~~d~s~~vr~~a~rA~~a~~~~~~----~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~-- 236 (1075)
T KOG2171|consen 164 FS-QTMTDPSSPVRVAAVRALGAFAEYLE----NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES-- 236 (1075)
T ss_pred HH-HhccCCcchHHHHHHHHHHHHHHHhc----cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh--
Confidence 11 13333222232233455555544432 111 1345555543333211 112555677777765555542
Q ss_pred ccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHh----cCch-HHH
Q 005008 363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQL----LRSA-TFI 437 (719)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~i----l~~~-~~l 437 (719)
.-..++|++.+++...+.-+.=.+ --+..|+.+-+++..+... .... .+.
T Consensus 237 ------------~pk~l~~~l~~ii~~~l~Ia~n~~-------------l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 237 ------------EPKLLRPHLSQIIQFSLEIAKNKE-------------LENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred ------------chHHHHHHHHHHHHHHHHHhhccc-------------ccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 235678999999888766543111 0134566555554443322 1000 123
Q ss_pred HHHHHHhhc---CCCCCCChhHH------------HHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHH
Q 005008 438 QKVFFGSWG---SANVPIPWKEV------------ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFM 502 (719)
Q Consensus 438 ~~~~~~~~~---~~~~~~~W~~~------------Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~ 502 (719)
..++..+.. .......|-+- -++.-++-.+|-.+. ++.. +|.+++.+......+... .|+.
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~--g~~v-~p~~~~~l~~~l~S~~w~-~R~A 367 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG--GKQV-LPPLFEALEAMLQSTEWK-ERHA 367 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC--hhhe-hHHHHHHHHHHhcCCCHH-HHHH
Confidence 333332211 00111235421 122233333333333 2222 677888887776655543 1212
Q ss_pred HHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhccc
Q 005008 503 HIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALI 562 (719)
Q Consensus 503 ~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l 562 (719)
+++. +..+|.=|.-.- -..|+++++.++.++.|| +|+.+|+.|+-.+..+-...+
T Consensus 368 aL~A---ls~i~EGc~~~m--~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 368 ALLA---LSVIAEGCSDVM--IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHH---HHHHHcccHHHH--HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 2221 234443332111 237899999999999985 599999999999887665444
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.14 Score=58.13 Aligned_cols=127 Identities=17% Similarity=0.054 Sum_probs=93.5
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCC--
Q 005008 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY-- 80 (719)
Q Consensus 3 ~~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~-- 80 (719)
|+....|+++-.+ .+++|..++.|++-|++..+.++.-.....+..... .+...|.-|+.-+|+-|.+.|.+
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~----~~m~lR~~a~i~fkn~I~~~W~~~~ 74 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAF----NSMSLRWAALIQFKNYIDKHWREEN 74 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccc----cchhHHHHHHHHHHhhHHHHhhhhc
Confidence 3345555554443 267788899999999999998884444444443332 46799999999999999999986
Q ss_pred ---CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hc-cCCChHHHHHHHhhh
Q 005008 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQN 138 (719)
Q Consensus 81 ---l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~-~~-~W~~~i~~li~~l~~ 138 (719)
+.+++...+|..++..+.+. +....-|.+.+++.+|.- ++ .||..++|+++.+++
T Consensus 75 ~~~i~p~e~v~IR~~l~~lii~s---~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~ 134 (947)
T COG5657 75 GNSILPDENVLIRDELFSLIISS---SNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE 134 (947)
T ss_pred ccCCCCccchHHHHHHHHHHHcc---cchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc
Confidence 55566669999999988753 233333777788888754 34 699999999999987
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.16 Score=56.48 Aligned_cols=519 Identities=14% Similarity=0.144 Sum_probs=239.3
Q ss_pred HHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhh
Q 005008 44 IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGP-PQLLTQICLALSALILRA 122 (719)
Q Consensus 44 ~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~-~~v~~kL~~ala~l~~~~ 122 (719)
++......+. +..+|+-|..-|.+-+...-..+. ++.=|+.+++..-.-.++| ..|+.+-..+|..+.--+
T Consensus 177 Iv~gmrk~e~-----s~~vRLaa~~aL~nsLef~~~nF~---~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 177 IVQGMRKEET-----SAAVRLAALNALYNSLEFTKANFN---NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHhhccccCC-----chhHHHHHHHHHHHHHHHHHHhhc---cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 4455554443 348999998888876642211111 2333555555443222333 356666666666554332
Q ss_pred cc-CCC-----hHHHHHHHhhhccCCCchhHHHHHHHhhhhhcccc-----ccccccCCChHHHHHHHHHHHhchhHHHH
Q 005008 123 VE-HGK-----PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID-----SQASDCNISSAHRSQYGQELLSHTPMVVE 191 (719)
Q Consensus 123 ~~-W~~-----~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~-----~~~~~~~l~~~~r~~~~~~l~~~~~~vl~ 191 (719)
+. -+. .+.--+..+.+. +...-.-..||=+.++||=.| .......+++....-.+..+..-.|-+++
T Consensus 249 Y~~m~~yM~~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 21 111 222223333332 111123345555544443222 00011113332222333444334455555
Q ss_pred HHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCC--hHHHHHHHHHHHhhc
Q 005008 192 FLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGR 269 (719)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~--~~~~a~~~l~eil~~ 269 (719)
.|.+.=....+ +.=+...++=.|+.-.-+.. .+.+. .+.++.+=+.+.+|+ -+++|+-.+..++..
T Consensus 327 ~L~kqde~~d~-----DdWnp~kAAg~CL~l~A~~~------~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 327 LLTKQDEDDDD-----DDWNPAKAAGVCLMLFAQCV------GDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HHHhCCCCccc-----ccCcHHHHHHHHHHHHHHHh------cccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 54432111111 01123344445554444421 12222 256677767888886 468888888887765
Q ss_pred CCC-----hhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCc
Q 005008 270 HEG-----LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDW 344 (719)
Q Consensus 270 ~~~-----~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~ 344 (719)
... ++...++.+..+.. .+.+.-.| .-+.-|-.+++..+..+.+ ..+....+..++.-... +.
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~---D~sl~Vkd-----TaAwtlgrI~d~l~e~~~n-~~~l~~~l~~l~~gL~D---eP 462 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMS---DPSLWVKD-----TAAWTLGRIADFLPEAIIN-QELLQSKLSALLEGLND---EP 462 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhc---Cchhhhcc-----hHHHHHHHHHhhchhhccc-HhhhhHHHHHHHHHhhh---Cc
Confidence 431 11222222221110 01111111 1122222233333322221 12334455555554332 23
Q ss_pred hhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHH
Q 005008 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELL 424 (719)
Q Consensus 345 ~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l 424 (719)
.++.-+.-=.+.|.|..+..... +.......|+|..++..|++-...++.. -...|...-+.|
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s-----~~qt~~~t~~y~~ii~~Ll~~tdr~dgn------------qsNLR~AAYeAL 525 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVS-----NGQTDPATPFYEAIIGSLLKVTDRADGN------------QSNLRSAAYEAL 525 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccC-----CCCCCccchhHHHHHHHHHhhccccccc------------hhhHHHHHHHHH
Confidence 46665554445577776543211 0111233488888888887654333211 012343322333
Q ss_pred HHH--------HHhcCc-hH-HHHHHHHHhhcCC---CCCCChhHHHHHHH-HHHHhhhhcccCCcccchhHHHHHHHHh
Q 005008 425 VDI--------CQLLRS-AT-FIQKVFFGSWGSA---NVPIPWKEVETKLF-ALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (719)
Q Consensus 425 ~~~--------~~il~~-~~-~l~~~~~~~~~~~---~~~~~W~~~Ea~L~-~l~~i~e~~~~~~~~~~l~~i~~ll~~l 490 (719)
.++ |.++-. .. ++..+-+.+.++. ......+++++-|. +|++|-..+..+-.+. .+.|+.++.++
T Consensus 526 mElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~-~d~iM~lflri 604 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV-SDQIMGLFLRI 604 (859)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH-HHHHHHHHHHH
Confidence 322 222111 01 1111111111110 01234667777653 4555554444322211 46688877666
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccchHHHHHHHHHhcCcC-c--hHHHHHHHHHHHHHHhhcccCCCc
Q 005008 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLAAGISEA-V--SSNACASALRKICEDASALIDEPS 566 (719)
Q Consensus 491 ~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L~~vl~~l~~~l~~~-~--v~~~Aa~al~~lc~~c~~~l~~p~ 566 (719)
.+.+... ++...++.-||...+-+... ..|++...+|+..+|.+- + |...|.--.-.+|+.-...+. |+
T Consensus 605 ~~s~~s~------~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~-py 677 (859)
T KOG1241|consen 605 FESKRSA------VVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL-PY 677 (859)
T ss_pred HcCCccc------cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh-hH
Confidence 5443211 22333445555555555443 468899999999999653 2 556666667778877777764 54
Q ss_pred hHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhh
Q 005008 567 NLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLI 627 (719)
Q Consensus 567 ~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~ 627 (719)
.-.....+.+.|.++.+..+.+-.++...|-|+-++. ..++.++.-++.-+++.-
T Consensus 678 ~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg------~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 678 CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG------ADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHH
Confidence 4444445666776766666666666777777766653 334445555555555554
No 21
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.33 E-value=0.0023 Score=67.60 Aligned_cols=202 Identities=12% Similarity=0.148 Sum_probs=101.8
Q ss_pred HHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhh--HHHHHHHHHH-HHHHhccCCCCCCC
Q 005008 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLDA-LLLRAQVDESSFND 403 (719)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~--~~~~~~Lv~~-l~~k~~~p~~~~~~ 403 (719)
....++|......+. ...++..++.|...+.+.. .....| +|++.+++.. ++-.|.+-+++. +
T Consensus 140 ~~vw~lL~~~~~~~~-~D~lv~~al~FL~~v~~~~------------~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~-E 205 (370)
T PF08506_consen 140 QAVWNLLTKISQQPK-YDILVSKALQFLSSVAESP------------HHKNLFENKPHLQQIIEKVIFPNLCLREEDE-E 205 (370)
T ss_dssp HHHHHHHTC--SSGG-GHHHHHHHHHHHHHHHTSH------------HHHTTT-SHHHHHHHHHHTHHHHHS--HHHH-H
T ss_pred HHHHHHHHHhhhccc-ccHHHHHHHHHHHHHHcch------------hHHHHhCCHHHHHHHHHHhccCccCCCHHHH-H
Confidence 344555666555442 2235667888855543321 222233 6788777764 344566543311 0
Q ss_pred CCCC---------CCCchHHHHHhHhhHHHHHHHHhcCch------HHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhh
Q 005008 404 DGMV---------DLPDGLVQFRMNLVELLVDICQLLRSA------TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVS 468 (719)
Q Consensus 404 ~~~~---------d~~d~f~~~R~~~~d~l~~~~~il~~~------~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~ 468 (719)
-|++ -|..|+..-|+...|+++..+.--+.. .+++.++++..+ +++.+|+..++++|.+++++
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~--~~~~~w~~KD~Al~Li~ala 283 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYAS--NPSNNWRSKDGALYLIGALA 283 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh--CCcccHHHHHHHHHHHHHHH
Confidence 0100 112345556777888888777653332 122333332222 24568999999999999998
Q ss_pred hhcccCCc---cc-chhHHHHHH-----HHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcC
Q 005008 469 EVVLQEGQ---AF-DFSVIMQLV-----AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (719)
Q Consensus 469 e~~~~~~~---~~-~l~~i~~ll-----~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~ 539 (719)
........ .. .+..+.+++ +.|..... .+ +++++.+|+.+..+-.-+ .++.+..+++.++..|.
T Consensus 284 ~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~-~~----piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 284 SKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVN-SH----PILKADAIKFLYTFRNQL--PKEQLLQIFPLLVNHLQ 356 (370)
T ss_dssp BSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS--S-----HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTT
T ss_pred hhhccccCCcccccccccHHHHHHHHhHHHhcccCC-CC----cchHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhC
Confidence 65431110 00 112233332 22221111 11 234444578777666543 25789999999999999
Q ss_pred cCc--hHHHHHHHH
Q 005008 540 EAV--SSNACASAL 551 (719)
Q Consensus 540 ~~~--v~~~Aa~al 551 (719)
++. |..-||.|+
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 876 667777664
No 22
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.91 Score=49.77 Aligned_cols=218 Identities=10% Similarity=0.120 Sum_probs=127.7
Q ss_pred HhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhH
Q 005008 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKE 456 (719)
Q Consensus 377 ~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~ 456 (719)
..+.|++..+++.++.+.- | . ..+-++--.+..+.+++|...-|...++..++..+.. ..||.
T Consensus 208 ~~~EPyiv~~lp~il~~~~-------d---~--~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~kWrt 270 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG-------D---K--INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AKWRT 270 (569)
T ss_pred CCCCchHHhhHHHHHHHhh-------c---c--chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hhhhh
Confidence 4456777788887776641 0 0 0111222234445667776666666677777666543 26999
Q ss_pred HHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHH
Q 005008 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAA 536 (719)
Q Consensus 457 ~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~ 536 (719)
..+++..++++++..+.-=+. .++.++..+.....+.++. ++.+. ..++-+|++.+. ||+ +.+.++-++.
T Consensus 271 K~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~e------vr~a~-~~~l~~~~svid-N~d-I~~~ip~Lld 340 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPE------VRKAG-IETLLKFGSVID-NPD-IQKIIPTLLD 340 (569)
T ss_pred HHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHH------HHHHH-HHHHHHHHHhhc-cHH-HHHHHHHHHH
Confidence 999999999999977632111 1344444444444455542 55554 599999999774 566 8999999999
Q ss_pred hcCcCch-HHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 005008 537 GISEAVS-SNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR 614 (719)
Q Consensus 537 ~l~~~~v-~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~ 614 (719)
++.||.- ...+..++.. .-=-+-+.++-++.+.-+.. .+.. -+...+.....-++....-+++.+ -+..
T Consensus 341 ~l~dp~~~~~e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~e--Rst~~kr~t~~IidNm~~LveDp~----~lap 411 (569)
T KOG1242|consen 341 ALADPSCYTPECLDSLGA---TTFVAEVDAPSLALMVPILKRGLAE--RSTSIKRKTAIIIDNMCKLVEDPK----DLAP 411 (569)
T ss_pred HhcCcccchHHHHHhhcc---eeeeeeecchhHHHHHHHHHHHHhh--ccchhhhhHHHHHHHHHHhhcCHH----HHhh
Confidence 9999973 3443333321 11111122335555554443 2221 123334555556666666564443 2456
Q ss_pred HHHHHHHHHHhhhccc
Q 005008 615 LLSSSYEAIGKLIDGD 630 (719)
Q Consensus 615 l~~p~~~~l~~~~~~~ 630 (719)
++.-++..++..+...
T Consensus 412 fl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 412 FLPSLLPGLKENLDDA 427 (569)
T ss_pred hHHHHhhHHHHHhcCC
Confidence 6667777777776654
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.05 E-value=3.5 Score=46.46 Aligned_cols=426 Identities=16% Similarity=0.139 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHH
Q 005008 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~s-~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~ 96 (719)
.++|...|+-+.=++..+-.. ++...++..-+..+=. +.+..+|-.|..++-+-. .++....+-..+...
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLN--SPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHH
Confidence 356778888888888888664 5545554444433211 235578888888887532 455566666666555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhcc-CCC-hHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHH
Q 005008 97 AKRFSSGPPQLLTQICLALSALILRAVE-HGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (719)
Q Consensus 97 l~~~~~~~~~v~~kL~~ala~l~~~~~~-W~~-~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~ 174 (719)
+. ..++.||++-+.++..++...+. -+. +++.+...+... ++......+.++..+ ... +..
T Consensus 123 l~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i--~~~----------~~~ 185 (526)
T PF01602_consen 123 LS---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI--KCN----------DDS 185 (526)
T ss_dssp HH---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH--HCT----------HHH
T ss_pred hc---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH--ccC----------cch
Confidence 54 45679999999999988877552 122 566666666442 333344555555544 110 000
Q ss_pred HHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCC--
Q 005008 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV-- 252 (719)
Q Consensus 175 r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~-- 252 (719)
.....+.++..+.+.+.. +++-+...+++++..+.... ........+++.+...+.+
T Consensus 186 -------~~~~~~~~~~~L~~~l~~--------~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 186 -------YKSLIPKLIRILCQLLSD--------PDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp -------HTTHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhHHHHHHHhhhcccc--------cchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccc
Confidence 001233344444444322 12345566677766544321 1110003455655555542
Q ss_pred CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHH
Q 005008 253 QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADA 332 (719)
Q Consensus 253 ~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ 332 (719)
+.+.-.|+.++..+-... .+.+.+.+.+ .. .+.+.|.+..--..+.+..++..+.+.+. + ...
T Consensus 245 ~~V~~e~~~~i~~l~~~~-~~~~~~~~~L----~~----lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~-------~~~ 307 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSP-ELLQKAINPL----IK----LLSSSDPNVRYIALDSLSQLAQSNPPAVF-N-------QSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHSSSH-HHHHHHHHHH----HH----HHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T-------HHH
T ss_pred cHHHHHHHHHHHHhhcch-HHHHhhHHHH----HH----HhhcccchhehhHHHHHHHhhcccchhhh-h-------hhh
Confidence 222333333333222211 1112222211 11 23344544332333445555555533332 1 112
Q ss_pred HHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCch
Q 005008 333 LLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDG 412 (719)
Q Consensus 333 ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~ 412 (719)
.+.+... +.|..+...+++--+.+.+.- + ... +++.+...+. +. .
T Consensus 308 ~~~~l~~-~~d~~Ir~~~l~lL~~l~~~~------------n----~~~----Il~eL~~~l~-~~-------------~ 352 (526)
T PF01602_consen 308 ILFFLLY-DDDPSIRKKALDLLYKLANES------------N----VKE----ILDELLKYLS-EL-------------S 352 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH--HH------------H----HHH----HHHHHHHHHH-HC--------------
T ss_pred hhheecC-CCChhHHHHHHHHHhhccccc------------c----hhh----HHHHHHHHHH-hc-------------c
Confidence 2223232 125567777777655544321 1 112 3333333331 00 0
Q ss_pred HHHHHhHhhHHHHHHHHhcCc--hHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHh
Q 005008 413 LVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (719)
Q Consensus 413 f~~~R~~~~d~l~~~~~il~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l 490 (719)
..++|.++...+..++..... +.++..++.-+.. ....-.+.+...+..+....+.. . -..+..++..+
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-----~~~~~~~~~~~~i~~ll~~~~~~-~---~~~l~~L~~~l 423 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-----SGDYVSNEIINVIRDLLSNNPEL-R---EKILKKLIELL 423 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-----TGGGCHCHHHHHHHHHHHHSTTT-H---HHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-----ccccccchHHHHHHHHhhcChhh-h---HHHHHHHHHHH
Confidence 123777777777777665433 2466666654432 11233445566666665443221 1 12233444445
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhh
Q 005008 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDAS 559 (719)
Q Consensus 491 ~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~ 559 (719)
.+...+. ++. +++|++|.|++.+.. .+..+.++..+...+.. +.++...-.++.++-...+
T Consensus 424 ~~~~~~~------~~~-~~~wilGEy~~~~~~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 424 EDISSPE------ALA-AAIWILGEYGELIEN-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TSSSSHH------HHH-HHHHHHHHHCHHHTT-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHHH------HHH-HHHhhhcccCCcccc-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 5544332 344 457999999998876 12555666666655543 5588888888988886655
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.86 E-value=4.9 Score=46.45 Aligned_cols=136 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-Cc------
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQ------ 524 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~-~p------ 524 (719)
.+=-.+|+-.|..++++..-++.-.++ ++.+...+..-..+|..+ +-+- ++.+.++|.+.+.. +|
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~-~~~Ls~~v~~aV~d~fyK------isaE-AL~v~~~lvkvirpl~~~~~~d~ 562 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPH-LSALSPPVVAAVGDPFYK------ISAE-ALLVCQQLVKVIRPLQPPSSFDA 562 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccc-hhhhhhHHHHHhcCchHh------hhHH-HHHHHHHHHHHhcccCCCccCCC
Confidence 446678998888888877655443322 333333333333444432 3333 36788888888754 22
Q ss_pred -cchHHHHHHHHHhcC----cCchHHHHHHHHHHHHHHhhcccCCCchHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 005008 525 -TNARPLLLFLAAGIS----EAVSSNACASALRKICEDASALIDEPSNLEI-LMWIGEALEKRHLPLEDEEEVVGAISLI 598 (719)
Q Consensus 525 -~~L~~vl~~l~~~l~----~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~-l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (719)
.+..+++...++.+. |.+|+.+|-.++..+...-+..+.. .++. |.-+.+.+. ..-.|...+.|...|
T Consensus 563 ~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~--eL~~~L~il~eRl~----nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 563 SPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN--ELPRTLPILLERLG----NEITRLTAVKALTLI 636 (1233)
T ss_pred ChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHh----chhHHHHHHHHHHHH
Confidence 466666666666664 3568888888877766555544432 2222 223333322 123577777777777
Q ss_pred Hcc
Q 005008 599 LGS 601 (719)
Q Consensus 599 i~~ 601 (719)
+.+
T Consensus 637 a~S 639 (1233)
T KOG1824|consen 637 AMS 639 (1233)
T ss_pred Hhc
Confidence 644
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.48 Score=56.86 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=99.6
Q ss_pred hhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch------HHHHHHHHHhhcC
Q 005008 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA------TFIQKVFFGSWGS 447 (719)
Q Consensus 374 ~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~------~~l~~~~~~~~~~ 447 (719)
+..+...|++.+|++.|.+ -+|+++. .+.+.+.+++..+-.+ .++..++..+..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyR-Y~yDP~~------------------~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYR-YQYDPDK------------------KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhh-hccCCcH------------------HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 4467789999999998853 4666651 3445566666654322 3677777765532
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHH--HHHHHHhhHHHHH--hC
Q 005008 448 ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRS--LADVIGSYSKWIS--AF 523 (719)
Q Consensus 448 ~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t--~~~~ig~y~~~~~--~~ 523 (719)
.++..||-+||++.++.-+-.+=+.++-...+|.+...+...-++-+.. +|-++ ++..+++.+-=+. .|
T Consensus 1048 -lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs------VR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1048 -LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES------VREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred -ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhcccCC
Confidence 2567799999999999988766432211001333333333333333321 22211 2344444432221 23
Q ss_pred ----ccchHHHHHHHH-HhcCc--CchHHHHHHHHHHHHHHhhcccC
Q 005008 524 ----QTNARPLLLFLA-AGISE--AVSSNACASALRKICEDASALID 563 (719)
Q Consensus 524 ----p~~L~~vl~~l~-~~l~~--~~v~~~Aa~al~~lc~~c~~~l~ 563 (719)
.+.+..+|+|++ .|+.+ +++++.+-..+.++.+..++.+.
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 358889999998 44443 56899999999999999998875
No 26
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.87 E-value=1.1 Score=46.73 Aligned_cols=170 Identities=8% Similarity=0.136 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhc------CCCChHHH-HHHHHHHHhhcCC----ChhHHHHH
Q 005008 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFDV-AIEVLVELVGRHE----GLPQALLC 279 (719)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l------~~~~~~~~-a~~~l~eil~~~~----~~~~~l~~ 279 (719)
.++..+|+-+..|++.. +........+++.+++.+ ..|+.++. +..++..++.+.. +....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~-----~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKA-----EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT------S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 46788889999999853 211122334444444422 24555543 6677777776543 33444554
Q ss_pred hhhh-hHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCC-hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHH
Q 005008 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS-PEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (719)
Q Consensus 280 ~~~~-l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~-~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (719)
.+.. ..+.+. .--++-+|...++-+++-.+.+.+...+..-| +.+..+++.++....|+ +++|++.++..-..+
T Consensus 117 ~vf~~Tl~MI~--~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMIN--KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHS--STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHH
Confidence 4443 122211 11133467888999999999999988887754 46788899999999997 789999999988888
Q ss_pred HHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhc
Q 005008 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (719)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~ 395 (719)
.+.+...+ .+.....++.+|..++..++.-+.
T Consensus 193 l~~~~~~~------~~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 193 LNNVSKTN------PEFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHHH-S------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77764312 134556677778777776666553
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.64 E-value=18 Score=42.14 Aligned_cols=506 Identities=15% Similarity=0.118 Sum_probs=233.3
Q ss_pred chhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhh
Q 005008 59 DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (719)
Q Consensus 59 ~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~ 138 (719)
+-..||+|..-|-+.++++--.|..+.-..+-.-|++.+. ..+.-|.+--.-+++-++-+.. .+-+..+++.+.+
T Consensus 18 DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~---D~ngEVQnlAVKClg~lvsKvk--e~~le~~ve~L~~ 92 (1233)
T KOG1824|consen 18 DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE---DKNGEVQNLAVKCLGPLVSKVK--EDQLETIVENLCS 92 (1233)
T ss_pred CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHhhch--HHHHHHHHHHHhh
Confidence 4589999999999999999888888777666667777764 3344466555556666664432 2334444444432
Q ss_pred c--cC-CCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHH
Q 005008 139 L--QS-QDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRK 215 (719)
Q Consensus 139 ~--~~-~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~ 215 (719)
. ++ .+..--..+.+.+++.+ +..+... .++.. .++.+...+.+.+.... +...++-.
T Consensus 93 ~~~s~keq~rdissi~Lktvi~n-l~P~~~~--~la~t-----------V~~~~t~~l~~~i~~qe------~~sai~~e 152 (1233)
T KOG1824|consen 93 NMLSGKEQLRDISSIGLKTVIAN-LPPSSSS--FLAAT-----------VCKRITPKLKQAISKQE------DVSAIKCE 152 (1233)
T ss_pred hhccchhhhccHHHHHHHHHHhc-CCCcccc--ccccH-----------HHHHHHHHHHHHhhhcc------cchhhHHH
Confidence 1 00 01011112222222222 1100000 01111 13333334443333221 22345666
Q ss_pred HHHHHHHHH-HcccccccCcchhcccchHHHHHHhcCCCC--hHHHHHHHHHHHhhcCC-ChhHHHHHhhhhhHHHchhh
Q 005008 216 ILRCLLSWV-RAGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELLLLP 291 (719)
Q Consensus 216 ~l~c~~sWi-~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~--~~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~~~~~~ 291 (719)
+++-+.-.+ ++| ++-++ ....++..+...+..+. ++-.|+-++..+..... .+...+...++. .+.+
T Consensus 153 ~lDil~d~lsr~g---~ll~~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~---~L~~- 223 (1233)
T KOG1824|consen 153 VLDILADVLSRFG---TLLPN--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLK---GLSN- 223 (1233)
T ss_pred HHHHHHHHHHhhc---ccCcc--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCC-
Confidence 666666554 333 11111 11224444445555543 46678888877776543 222223222211 1111
Q ss_pred hhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCC-CCCchhhhhhHHHHHHHHHHHhccchhhhh
Q 005008 292 ALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFP-SEDWEIADSTLQFWSTLASYILGLDASIAK 370 (719)
Q Consensus 292 a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p-~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~ 370 (719)
...+...+-+.+.+.+++-..=.-+- .+....+.++..++..- ..|++..+.+++-...|...
T Consensus 224 ---~~q~~~~rt~Iq~l~~i~r~ag~r~~---~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---------- 287 (1233)
T KOG1824|consen 224 ---RTQMSATRTYIQCLAAICRQAGHRFG---SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---------- 287 (1233)
T ss_pred ---CCchHHHHHHHHHHHHHHHHhcchhh---cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh----------
Confidence 11122233333444433322211111 13345556666666221 12556777666654444432
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCC-----------C-CCCC-------CCchHHHHHhHhhHH--------
Q 005008 371 NKKHVEDMFFSVFSALLDALLLRAQVDESSFND-----------D-GMVD-------LPDGLVQFRMNLVEL-------- 423 (719)
Q Consensus 371 ~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~-----------~-~~~d-------~~d~f~~~R~~~~d~-------- 423 (719)
......|+...+++.++.+..|+++-.++ + +|+| |+|-==..|+..+.+
T Consensus 288 ----cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 288 ----CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred ----ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 12335678888899999999997651110 0 1111 111111235544443
Q ss_pred ---HHHHHHhcCchHHHH-----------HHHH---Hhhc----------C------CC-CCCChhHHHHHHHHHHHhhh
Q 005008 424 ---LVDICQLLRSATFIQ-----------KVFF---GSWG----------S------AN-VPIPWKEVETKLFALNVVSE 469 (719)
Q Consensus 424 ---l~~~~~il~~~~~l~-----------~~~~---~~~~----------~------~~-~~~~W~~~Ea~L~~l~~i~e 469 (719)
+-+.|.-+|+. .+. .+|. .+.. . .+ ++.-|--.+...+.+.++++
T Consensus 364 ~E~L~~~~q~l~p~-lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ 442 (1233)
T KOG1824|consen 364 LEMLPDFYQTLGPA-LISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK 442 (1233)
T ss_pred HHHHHHHHHHhCHH-HHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence 34444445543 111 1111 1110 0 00 11227677777888888888
Q ss_pred hcccCCccc---chhHHHHHHHHhcc----Cchhhhh-------hH--HHHHHHHHHHHHHhhHHHHHhC-cc----chH
Q 005008 470 VVLQEGQAF---DFSVIMQLVAVLSA----SRSEELK-------GF--MHIVYRSLADVIGSYSKWISAF-QT----NAR 528 (719)
Q Consensus 470 ~~~~~~~~~---~l~~i~~ll~~l~~----~~~~~~~-------~~--~~l~~~t~~~~ig~y~~~~~~~-p~----~L~ 528 (719)
.+++..-.. .+..+..++..+|. |-....+ .+ -.... +..++....-+..| |+ +++
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~k---i~~L~fl~~~L~s~~p~~fhp~~~ 519 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLK---IDALVFLYSALISHPPEVFHPHLS 519 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHH---HHHHHHHHHHHhcCChhhcccchh
Confidence 776321110 01122222222221 0000000 00 00111 23344444444444 33 566
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHHHhhc--ccCC------CchHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005008 529 PLLLFLAAGISEAVSSNACASALRKICEDASA--LIDE------PSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLIL 599 (719)
Q Consensus 529 ~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~--~l~~------p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (719)
...+.+..++.+|- -.-++.|+.-.|+-|+. .+.. +++...+ ....+.|.....+.+.+++.+.++|.++
T Consensus 520 ~Ls~~v~~aV~d~f-yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i 598 (1233)
T KOG1824|consen 520 ALSPPVVAAVGDPF-YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQII 598 (1233)
T ss_pred hhhhHHHHHhcCch-HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 77777778888863 22334455554444442 1111 1133223 2333344455667889999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHh
Q 005008 600 GSVSNKELKNNLLARLLSSSYEAIGK 625 (719)
Q Consensus 600 ~~~p~~~~~~~~l~~l~~p~~~~l~~ 625 (719)
..+.+- . ..-+...+.-+..++++
T Consensus 599 ~~fgD~-l-~~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 599 ANFGDF-L-GNELPRTLPILLERLGN 622 (1233)
T ss_pred HHHhhh-h-hhhhHHHHHHHHHHHhc
Confidence 987632 1 33344455555555544
No 28
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=15 Score=41.28 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhcccc
Q 005008 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (719)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~-~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~ 162 (719)
+-...|-+-++.++. ..-++||.|-...|--++++++ .-..+++-+.+.+... ++....+.. .+++|=...
T Consensus 140 dLARDLa~Dv~tLL~---sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAAV---~VICELArK 211 (877)
T KOG1059|consen 140 DLARDLADDVFTLLN---SSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAAV---SVICELARK 211 (877)
T ss_pred hhhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHHH---HHHHHHHhh
Confidence 344555556666653 2347899999888888888875 2334455555555432 332223333 334442211
Q ss_pred ccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccch
Q 005008 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (719)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~l 242 (719)
+ + +....-+|..+.+++..-+ .=+....++-|.+-..+.++ +. -.|
T Consensus 212 n-------P--------knyL~LAP~ffkllttSsN-----------NWmLIKiiKLF~aLtplEPR--Lg------KKL 257 (877)
T KOG1059|consen 212 N-------P--------QNYLQLAPLFYKLLVTSSN-----------NWVLIKLLKLFAALTPLEPR--LG------KKL 257 (877)
T ss_pred C-------C--------cccccccHHHHHHHhccCC-----------CeehHHHHHHHhhccccCch--hh------hhh
Confidence 1 1 1122335666666653211 12567788888877665432 11 124
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhhcCC-----ChhHHHHHhhhh-hHHHchhhhhhcCchhHHhHHHHH-HHHHHHhc
Q 005008 243 LNFVFNSLQVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPF-LKELLLLPALTDGDEKVIGGLACL-MSEIGQAA 315 (719)
Q Consensus 243 l~~~~~~l~~~~~~~~a~~~l~eil~~~~-----~~~~~l~~~~~~-l~~~~~~~a~~~~d~e~~~~l~~l-~~~~~e~~ 315 (719)
++.+.+.+.+-.....--||+..++...+ +-...+ .-+.+ ++. .+.+.| ...+.++-+ +..++..
T Consensus 258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi-qLCvqKLr~-----fiedsD-qNLKYlgLlam~KI~kt- 329 (877)
T KOG1059|consen 258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI-QLCVQKLRI-----FIEDSD-QNLKYLGLLAMSKILKT- 329 (877)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH-HHHHHHHhh-----hhhcCC-ccHHHHHHHHHHHHhhh-
Confidence 44444444433222333456666655421 111111 11111 221 222333 233333322 2223333
Q ss_pred hHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHH
Q 005008 316 PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (719)
Q Consensus 316 ~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e 359 (719)
||..+++--+++++|...- |..|...+++..|.+..
T Consensus 330 ------Hp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 330 ------HPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVS 365 (877)
T ss_pred ------CHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhh
Confidence 3334566678999999874 77888888887665543
No 29
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.38 E-value=0.11 Score=33.07 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=24.2
Q ss_pred HHHHHHHhcCcC--chHHHHHHHHHHHHHHh
Q 005008 530 LLLFLAAGISEA--VSSNACASALRKICEDA 558 (719)
Q Consensus 530 vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c 558 (719)
+++.+++.+.|| +|+.+|+.+|..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 478888999985 59999999999999866
No 30
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.32 E-value=15 Score=40.47 Aligned_cols=224 Identities=11% Similarity=0.065 Sum_probs=127.3
Q ss_pred HHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 005008 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM 406 (719)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~ 406 (719)
..++.-+.-+.... +.+|..-|+.|-..++..- +.+ .....+.-+-..|++.+. .|.
T Consensus 687 ~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~---pey------i~~rEWMRIcfeLvd~Lk------------s~n 743 (975)
T COG5181 687 SGILPSLTPILRNK--HQKVVANTIALVGTICMNS---PEY------IGVREWMRICFELVDSLK------------SWN 743 (975)
T ss_pred hhccccccHhhhhh--hHHHhhhHHHHHHHHHhcC---ccc------CCHHHHHHHHHHHHHHHH------------Hhh
Confidence 44444444444443 4677778887766655421 111 011112222334444441 232
Q ss_pred CCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHH
Q 005008 407 VDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL 486 (719)
Q Consensus 407 ~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~l 486 (719)
++.|+..-+++-.+..++|+.+.|..+++++.. ++-+.+=..-.+++-+||.+.. ...++.+
T Consensus 744 -------KeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkv-----qeRq~RvctsvaI~iVae~cgp------fsVlP~l 805 (975)
T COG5181 744 -------KEIRRNATETFGCISRAIGPQDVLDILLNNLKV-----QERQQRVCTSVAISIVAEYCGP------FSVLPTL 805 (975)
T ss_pred -------HHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchH-----HHHHhhhhhhhhhhhhHhhcCc------hhhHHHH
Confidence 456888888999999999998888888887643 2344444456788888887753 2233333
Q ss_pred HHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh----CccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhc
Q 005008 487 VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA----FQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASA 560 (719)
Q Consensus 487 l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~----~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~ 560 (719)
+... ..|.. -++.. ++.++|.+|+. .-+|...+.+.+-.+|.| |..+..|+.-++.+.-.|..
T Consensus 806 m~dY---~TPe~-----nVQnG---vLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 806 MSDY---ETPEA-----NVQNG---VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred Hhcc---cCchh-----HHHHh---HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 3221 11211 12222 22333333332 246888888888899986 45688999999999988886
Q ss_pred ccCCCchHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHccCCchH
Q 005008 561 LIDEPSNLEILMWIGEALEKRH--LPLEDEEEVVGAISLILGSVSNKE 606 (719)
Q Consensus 561 ~l~~p~~~~~l~~~~~~l~~~~--l~~~~~~~l~eai~~vi~~~p~~~ 606 (719)
.- ..+....+..-+-... -.+..+..+-||+-.+...+.+.-
T Consensus 875 tg----~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~ 918 (975)
T COG5181 875 TG----DEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGA 918 (975)
T ss_pred cc----cHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 42 5555444433221111 134566677777777776665543
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.09 E-value=0.51 Score=39.42 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccC
Q 005008 524 QTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALID 563 (719)
Q Consensus 524 p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~ 563 (719)
.+|++.+++.++.++.|+ +|+..||.||.++++.++..+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l 63 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL 63 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999985 5999999999999999987653
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.84 E-value=2.2 Score=42.10 Aligned_cols=139 Identities=16% Similarity=0.105 Sum_probs=81.9
Q ss_pred CCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHH----Hhcc-CchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc
Q 005008 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLSA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (719)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~----~l~~-~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p 524 (719)
.+.+|.....+|--+..+..+-..... .+.++..+. .+.. ....+. .+... +|.+++.++.-++.+-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~---~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~~-A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF---PPDFVECLRQLLDAIIKQLSDLRS----KVSKT-ACQLLSDLARQLGSHF 88 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-HH-------HHHH-HHHHHHHHHHHHGGGG
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc---HHHHHHHHHHhHHHHHHHHhhhHH----HHHHH-HHHHHHHHHHHHhHhH
Confidence 457899999999999998775521111 233333332 2221 111121 24444 5799999999888773
Q ss_pred -cchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 525 -TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 525 -~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
.++..+++.++..+.++. ++..|..++..+|+.|... +.. +....... ...-.+..|....+.+..++..
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~---~~~~l~~~-~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI---LLEILSQG-LKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHH-TT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH---HHHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 367888888998888754 7899999999999988711 112 12222111 1122466899999999999999
Q ss_pred CC
Q 005008 602 VS 603 (719)
Q Consensus 602 ~p 603 (719)
.+
T Consensus 162 ~~ 163 (228)
T PF12348_consen 162 WG 163 (228)
T ss_dssp --
T ss_pred cc
Confidence 88
No 33
>PRK09687 putative lyase; Provisional
Probab=92.49 E-value=14 Score=37.75 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=112.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHH
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~ 88 (719)
+...+..|. ++|...|..|...|.++ .+++++..+..++.+++ ..+|.+|+..|-.. .. +...
T Consensus 25 ~~~L~~~L~-d~d~~vR~~A~~aL~~~-~~~~~~~~l~~ll~~~d------~~vR~~A~~aLg~l-g~-----~~~~--- 87 (280)
T PRK09687 25 DDELFRLLD-DHNSLKRISSIRVLQLR-GGQDVFRLAIELCSSKN------PIERDIGADILSQL-GM-----AKRC--- 87 (280)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhc-CcchHHHHHHHHHhCCC------HHHHHHHHHHHHhc-CC-----Cccc---
Confidence 445555554 78888999999999765 47899999999887654 49999999999752 11 1100
Q ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhhccC-CChHHHHHHHhhhcc--------------CCCchhHHHHH
Q 005008 89 LLNALLVAAKRF--SSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLE 151 (719)
Q Consensus 89 Lr~~Ll~~l~~~--~~~~~~v~~kL~~ala~l~~~~~~W-~~~i~~li~~l~~~~--------------~~~~~~~~~L~ 151 (719)
+...+..|... ......|+...+.+|+.+......| +..+..+...+.... +++.....++.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 11122222211 2344678888888887664333333 344444433332210 01222333333
Q ss_pred HHhhhhhccccccccccCCChHHHHHHHHHHHh---chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccc
Q 005008 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC 228 (719)
Q Consensus 152 ~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~ 228 (719)
.|. +. ...-|..-...|.. ..+.+...|...+... +..++..+...+.. .+
T Consensus 167 ~L~-------d~-------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~--------~~~VR~~A~~aLg~---~~- 220 (280)
T PRK09687 167 LLK-------DP-------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQDK--------NEEIRIEAIIGLAL---RK- 220 (280)
T ss_pred Hhc-------CC-------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--------ChHHHHHHHHHHHc---cC-
Confidence 332 10 12334444444443 2556667777666432 24566666655543 11
Q ss_pred ccccCcchhcccchHHHHHHhcCCCChHHHHHHHHHHHh
Q 005008 229 FTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELV 267 (719)
Q Consensus 229 ~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil 267 (719)
...-++.+.+.|.++..+..+++++.++=
T Consensus 221 ----------~~~av~~Li~~L~~~~~~~~a~~ALg~ig 249 (280)
T PRK09687 221 ----------DKRVLSVLIKELKKGTVGDLIIEAAGELG 249 (280)
T ss_pred ----------ChhHHHHHHHHHcCCchHHHHHHHHHhcC
Confidence 12356667777777776666666665543
No 34
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.17 E-value=0.7 Score=38.61 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccchHHHHHHHH
Q 005008 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLA 535 (719)
Q Consensus 457 ~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L~~vl~~l~ 535 (719)
+-++|.+|.+++-++...-... ++.|++.+.....++..+ +|+.+ |+.+...+...... -.++..+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~r------VRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSR------VRYYA-CEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999998887653322 556666555555555543 78875 79999998877542 237788999999
Q ss_pred HhcCcCc--hHHHHHHHHHH
Q 005008 536 AGISEAV--SSNACASALRK 553 (719)
Q Consensus 536 ~~l~~~~--v~~~Aa~al~~ 553 (719)
+.+.||+ |+..| ..+-+
T Consensus 75 kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 75 KLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHcCCchhHHHHH-HHHHH
Confidence 9998865 55554 44443
No 35
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=90.45 E-value=36 Score=38.64 Aligned_cols=307 Identities=10% Similarity=0.093 Sum_probs=160.3
Q ss_pred cchHHHHHHhcCCC--ChHHHHHHHHHHHh---hcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHh
Q 005008 240 HPLLNFVFNSLQVQ--SSFDVAIEVLVELV---GRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (719)
Q Consensus 240 ~~ll~~~~~~l~~~--~~~~~a~~~l~eil---~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~ 314 (719)
.+++..++..|+++ ..+..|++.+..+. ..+.+ +.++..+ ...+. +.+.+++.|..-.+-..+.++...
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e--e~~m~~l---GvvLy-EylgeeypEvLgsILgAikaI~nv 871 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE--EKLMGHL---GVVLY-EYLGEEYPEVLGSILGAIKAIVNV 871 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH--HHHHHHh---hHHHH-HhcCcccHHHHHHHHHHHHHHHHh
Confidence 34566666666654 45666777664432 22221 1122211 11111 245566766543333333222211
Q ss_pred chHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 005008 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (719)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~ 394 (719)
+ -+..-.+.+..++.-|.-+.... ++.|.+-++.+-..+++.- .+ . ..-..+--+-..|++.|..
T Consensus 872 i--gm~km~pPi~dllPrltPILknr--heKVqen~IdLvg~Iadrg--pE-~------v~aREWMRIcfeLlelLka-- 936 (1172)
T KOG0213|consen 872 I--GMTKMTPPIKDLLPRLTPILKNR--HEKVQENCIDLVGTIADRG--PE-Y------VSAREWMRICFELLELLKA-- 936 (1172)
T ss_pred c--cccccCCChhhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcC--cc-c------CCHHHHHHHHHHHHHHHHH--
Confidence 1 00000112445555555555553 5678888888766666531 11 1 0011122223344444411
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccC
Q 005008 395 QVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (719)
Q Consensus 395 ~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~ 474 (719)
| -++.|+..-++|-++...+|+.++|..+++++.. ++-|.+=..-.+++-++|.|..
T Consensus 937 ----------h-------kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkv-----qeRq~RvcTtvaIaIVaE~c~p- 993 (1172)
T KOG0213|consen 937 ----------H-------KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKV-----QERQNRVCTTVAIAIVAETCGP- 993 (1172)
T ss_pred ----------H-------HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchH-----HHHHhchhhhhhhhhhhhhcCc-
Confidence 1 1456888888999999999998888888887643 2233444456778888888753
Q ss_pred CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-CccchHHHHHHHHHhcCcCc--hHHHHHHHH
Q 005008 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAAGISEAV--SSNACASAL 551 (719)
Q Consensus 475 ~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~-~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al 551 (719)
+..++.++...- -|.. -++..++..++-+-+|+.. ..+|+..+++.+-.+|.|.+ .+..|+.++
T Consensus 994 -----FtVLPalmneYr-tPe~-------nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I 1060 (1172)
T KOG0213|consen 994 -----FTVLPALMNEYR-TPEA-------NVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVI 1060 (1172)
T ss_pred -----hhhhHHHHhhcc-Cchh-------HHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHH
Confidence 233343332211 1111 1222222333323333332 25799999999999998744 588999999
Q ss_pred HHHHHHhhcccCCCchHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHccCCchHH
Q 005008 552 RKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNKEL 607 (719)
Q Consensus 552 ~~lc~~c~~~l~~p~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~~p~~~~ 607 (719)
+.+.-.|... ...+.+..+...+-. ....+.....+.|++-.+-.++.+...
T Consensus 1061 ~Hl~Lg~~g~----g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~ 1114 (1172)
T KOG0213|consen 1061 KHLALGVPGT----GCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAM 1114 (1172)
T ss_pred HHHhcCCCCc----CcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHH
Confidence 9998776643 255555554432211 122445566677777666666666544
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.40 E-value=0.38 Score=35.31 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~ 515 (719)
|+-+++++++|+.+++........+ ++.++..+..+..++.+ .||..+ ++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~------~VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDD------SVRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSH------HHHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCH------HHHHHH-HHHHhc
Confidence 7889999999999887666443322 45666655555565554 266664 799986
No 37
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=44 Score=39.30 Aligned_cols=464 Identities=14% Similarity=0.114 Sum_probs=225.9
Q ss_pred hHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCCh--HHHHHHHHHHHhhcCC-----------ChhHHHH
Q 005008 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSS--FDVAIEVLVELVGRHE-----------GLPQALL 278 (719)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~~--~~~a~~~l~eil~~~~-----------~~~~~l~ 278 (719)
++..--.|++.-|.. ..|. ....+++.+-..|++++. .-.+.-|+-+++..++ ..++..+
T Consensus 105 iRvql~~~l~~Ii~~----D~p~---~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~f 177 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKA----DYPE---QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELF 177 (1010)
T ss_pred HHHHHHHHHHHHHhc----CCcc---cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 455555666665553 3342 235577777788887764 3467888888887653 1345667
Q ss_pred HhhhhhHHHchhhhhhcCch---hHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhh--------
Q 005008 279 CRVPFLKELLLLPALTDGDE---KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIA-------- 347 (719)
Q Consensus 279 ~~~~~l~~~~~~~a~~~~d~---e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~-------- 347 (719)
|.++++...+. ..++. +..+-++++|-++.-.-.+.-..+++.+..-+++.+....-|+. .++.
T Consensus 178 P~il~~~~~ll----~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP-~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 178 PDILQIFNGLL----SQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVP-VEVLSLDPEDRS 252 (1010)
T ss_pred HHHHHHHHhhc----cccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCC-hhcccCChhhcc
Confidence 77666554433 22233 34567788887666655555455556677888888998888852 1111
Q ss_pred --------hhhHHHHHHHHHHHhccchhhhhhhhhhHHh-hHHHHHHHHHHHHHHhc-cCCCCCCCCCCCCCCchHHHHH
Q 005008 348 --------DSTLQFWSTLASYILGLDASIAKNKKHVEDM-FFSVFSALLDALLLRAQ-VDESSFNDDGMVDLPDGLVQFR 417 (719)
Q Consensus 348 --------~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~-~~~~~~~Lv~~l~~k~~-~p~~~~~~~~~~d~~d~f~~~R 417 (719)
.=++.+-+.+.+...+. ....++.....+. .+.++..+++++++... |-.. .|-.+.-.
T Consensus 253 ~~~wwK~KKWa~~~L~Rlf~Ryg~~-~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~----~yls~rvl------ 321 (1010)
T KOG1991|consen 253 SWPWWKCKKWALHILNRLFERYGSP-SLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQ----LYLSDRVL------ 321 (1010)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCHHHH------
Confidence 12444444444433111 1100000111122 23444555555555442 2221 12111100
Q ss_pred hHhhHHHHH------HHHhcCchH--HHH-HHHHHhhcCCCCCCChh-------------------HHHHHHHHHHHhhh
Q 005008 418 MNLVELLVD------ICQLLRSAT--FIQ-KVFFGSWGSANVPIPWK-------------------EVETKLFALNVVSE 469 (719)
Q Consensus 418 ~~~~d~l~~------~~~il~~~~--~l~-~~~~~~~~~~~~~~~W~-------------------~~Ea~L~~l~~i~e 469 (719)
+.+.+.+.. .+..+++-. ++. .+|..+.-+.+...-|+ -.=|++.++..++.
T Consensus 322 ~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~ 401 (1010)
T KOG1991|consen 322 YYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVS 401 (1010)
T ss_pred HHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHH
Confidence 112222222 233344321 111 12221110000001122 12355555554433
Q ss_pred hcccCCcccchhHHHHHHHHhc----cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-c--cch-HHHHHHHHHhcCcC
Q 005008 470 VVLQEGQAFDFSVIMQLVAVLS----ASRSEELKGFMHIVYRSLADVIGSYSKWISAF-Q--TNA-RPLLLFLAAGISEA 541 (719)
Q Consensus 470 ~~~~~~~~~~l~~i~~ll~~l~----~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p--~~L-~~vl~~l~~~l~~~ 541 (719)
+.+.+. ++.+++.+..+. ..+.+..+ ....-.+++++|+.++.+... | ..+ .-+++.++..++.|
T Consensus 402 ---KR~ke~-l~k~l~F~~~Il~~~~~~~~~~~~---~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~ 474 (1010)
T KOG1991|consen 402 ---KRGKET-LPKILSFIVDILTRYKEASPPNKN---PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP 474 (1010)
T ss_pred ---hcchhh-hhhHHHHHHHHHHhhcccCCCccC---hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc
Confidence 221111 566665543332 22111111 123344689999999988664 2 222 24556667777777
Q ss_pred c--hHHHHHHHHHHHHHHhhcccCCCc-hHHHHHHHHHHHH-hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 005008 542 V--SSNACASALRKICEDASALIDEPS-NLEILMWIGEALE-KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (719)
Q Consensus 542 ~--v~~~Aa~al~~lc~~c~~~l~~p~-~~~~l~~~~~~l~-~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~ 617 (719)
. ++++||.-+..+|+. .+..+. ...++...+.++. ...+ ..+....-|+-..|+..+.. ..++...+.
T Consensus 475 ~g~Lrarac~vl~~~~~~---df~d~~~l~~ale~t~~~l~~d~~l--PV~VeAalALq~fI~~~~~~---~e~~~~hvp 546 (1010)
T KOG1991|consen 475 YGYLRARACWVLSQFSSI---DFKDPNNLSEALELTHNCLLNDNEL--PVRVEAALALQSFISNQEQA---DEKVSAHVP 546 (1010)
T ss_pred hhHHHHHHHHHHHHHHhc---cCCChHHHHHHHHHHHHHhccCCcC--chhhHHHHHHHHHHhcchhh---hhhHhhhhh
Confidence 5 799999999999842 221111 2233333344443 2223 35777777888888876543 356888999
Q ss_pred HHHHHHHhhhcccCCCCCCCCc-----hhHHHHHHHHHHhHhh-hhhh-hcccccCCCCCCCCCchHHHHHHHHHHHHHH
Q 005008 618 SSYEAIGKLIDGDNNHSLIHNP-----ATYTQILSSATRGLYR-MGTV-FSHLPVPLPTNPAGDDPIFALLRVFWPMLEK 690 (719)
Q Consensus 618 p~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~-l~~~-f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~ 690 (719)
|+++.+-.+........- +.. ....+.++..+.++-. |+.. .+.++...+..+.++ --.-..-.+..++.+
T Consensus 547 ~~mq~lL~L~ne~End~L-t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~d-dk~iaA~GiL~Ti~T 624 (1010)
T KOG1991|consen 547 PIMQELLKLSNEVENDDL-TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDD-DKAIAASGILRTIST 624 (1010)
T ss_pred HHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccch-HHHHHHHHHHHHHHH
Confidence 999998888776543210 000 0011112111111111 3332 333333222112222 222333456667777
Q ss_pred HHHhhhccccHHHHH---HH-HHHHHHHHh
Q 005008 691 LFRSEHMENGNLSTA---AC-RALSLAIQS 716 (719)
Q Consensus 691 i~~~~~~~~~~vie~---~c-~~~~~~~~~ 716 (719)
++.. ..+.++|.+. +| .+..+++..
T Consensus 625 il~s-~e~~p~vl~~le~~~l~vi~~iL~~ 653 (1010)
T KOG1991|consen 625 ILLS-LENHPEVLKQLEPIVLPVIGFILKN 653 (1010)
T ss_pred HHHH-HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 7774 7777777544 44 455555443
No 38
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=3.9 Score=44.65 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=89.4
Q ss_pred CchHHHHHHHHHHHHHHh---hcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 005008 541 AVSSNACASALRKICEDA---SALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (719)
Q Consensus 541 ~~v~~~Aa~al~~lc~~c---~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~ 617 (719)
|.++-.||.|+.+|+..- .+..+.....++|..+.. .-..+.++..+=|+|.|+.--|.-+. .-.-...+.
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~-----s~~~~v~eQavWALgNIagds~~~Rd-~vl~~g~l~ 197 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS-----SPSADVREQAVWALGNIAGDSPDCRD-YVLSCGALD 197 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc-----CCcHHHHHHHHHHHhccccCChHHHH-HHHhhcchH
Confidence 778999999999999533 233333346677666653 22456799999999999988776643 233345566
Q ss_pred HHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 005008 618 SSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM 697 (719)
Q Consensus 618 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~ 697 (719)
|++..+..-.. ...++.+... |+.+.+.- .++|....++.+.|+|..++. .
T Consensus 198 pLl~~l~~~~~--------------~~~lRn~tW~---LsNlcrgk---------~P~P~~~~v~~iLp~L~~ll~---~ 248 (514)
T KOG0166|consen 198 PLLRLLNKSDK--------------LSMLRNATWT---LSNLCRGK---------NPSPPFDVVAPILPALLRLLH---S 248 (514)
T ss_pred HHHHHhccccc--------------hHHHHHHHHH---HHHHHcCC---------CCCCcHHHHHHHHHHHHHHHh---c
Confidence 66654433111 0111112221 34555542 257788899999999999885 4
Q ss_pred cccHHHHHHHHHHHHH
Q 005008 698 ENGNLSTAACRALSLA 713 (719)
Q Consensus 698 ~~~~vie~~c~~~~~~ 713 (719)
.|.+|...+|-.+.+.
T Consensus 249 ~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 249 TDEEVLTDACWALSYL 264 (514)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999777653
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.35 E-value=0.58 Score=40.46 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCccc----chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccch
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAF----DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA 527 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~----~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L 527 (719)
.+|..++.++++++.++...++..... .++.+.+++ +++.+ .++..+ ++++++++......++.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~~~~------~v~~~a-~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL----KSEDE------EVVKAA-LWALRNLAAGPEDNKLIV 87 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH----hCCCH------HHHHHH-HHHHHHHccCcHHHHHHH
Confidence 359999999999999987643211100 023333332 23332 255554 689988876543322222
Q ss_pred H--HHHHHHHHhcCc--CchHHHHHHHHHHHHH
Q 005008 528 R--PLLLFLAAGISE--AVSSNACASALRKICE 556 (719)
Q Consensus 528 ~--~vl~~l~~~l~~--~~v~~~Aa~al~~lc~ 556 (719)
. .+++.+++.+.+ .+++..|+.+|.++|+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 1 256666666665 3589999999999874
No 40
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=89.09 E-value=0.55 Score=34.43 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhHHHHHhC-ccchHHHHHHHHHhcCcC--chHHHHHHHHHHH
Q 005008 504 IVYRSLADVIGSYSKWISAF-QTNARPLLLFLAAGISEA--VSSNACASALRKI 554 (719)
Q Consensus 504 l~~~t~~~~ig~y~~~~~~~-p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~l 554 (719)
+|..+ ++.||+.+.-.... ..+++.+++.++..+.|+ .|+..|+.||.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56654 69999754321111 237889999999999874 4999999998754
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.99 E-value=5.2 Score=44.71 Aligned_cols=137 Identities=11% Similarity=0.037 Sum_probs=80.0
Q ss_pred ChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccch--HHH
Q 005008 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--RPL 530 (719)
Q Consensus 453 ~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L--~~v 530 (719)
+=..++.++.+|..+-+......- .+.+...+.....||.+. |+.- +++.|+++.+--..-.+.+ ..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~------Vr~l-~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPK------VRRL-ALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHH------HHHH-HHHHHHHHhcCCHHHHHHhcCccH
Confidence 456678888888887775543221 456666666666777753 4544 3688888753110000111 356
Q ss_pred HHHHHHhcCcCc--hHHHHHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 005008 531 LLFLAAGISEAV--SSNACASALRKICEDASA--LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (719)
Q Consensus 531 l~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~--~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~ 604 (719)
++.++.++.+++ |+..|+.++.+++..-.. .+..+.....|..+. . .-+...|.++++.+..+.+.-+.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~---~--~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLM---S--QSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHH---h--ccCHHHHHHHHHHHHHHHhcCHH
Confidence 777888888875 889999999999842110 111111112222221 1 11445799999999998766533
No 42
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.86 E-value=4.8 Score=39.61 Aligned_cols=171 Identities=18% Similarity=0.114 Sum_probs=83.4
Q ss_pred hHHHHHhHHHHHHhhcc-cCCCChhhHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhcc-CCChHHHHHHH--
Q 005008 61 EVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKR-FSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYS-- 135 (719)
Q Consensus 61 ~~~ffaA~tL~~ki~~~-~~~l~~~~~~~Lr~~Ll~~l~~-~~~~~~~v~~kL~~ala~l~~~~~~-W~~~i~~li~~-- 135 (719)
+.|.=|.+.|+.-++.+ -...++.....+| .++..+.. .......|...-|.+++.++.+... ....+..++..
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 55666777777777765 1223344445555 22233332 2122245888888899999887653 32233333332
Q ss_pred --hhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHH-HHHHHHHhhcccCCCCCcchhhh
Q 005008 136 --LQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV-VEFLMQQSDKRFDGGVPVQLHDR 212 (719)
Q Consensus 136 --l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v-l~~l~~~l~~~~~~~~~~~~~~l 212 (719)
+... ...........|..+.+-+. ..+.+ +.++.....+ .+..+
T Consensus 101 ~~~~~~--~~~i~~~a~~~L~~i~~~~~-----------------------~~~~~~~~~l~~~~~~--------Kn~~v 147 (228)
T PF12348_consen 101 KKLGDS--KKFIREAANNALDAIIESCS-----------------------YSPKILLEILSQGLKS--------KNPQV 147 (228)
T ss_dssp HGGG-----HHHHHHHHHHHHHHHTTS------------------------H--HHHHHHHHHHTT---------S-HHH
T ss_pred HHHccc--cHHHHHHHHHHHHHHHHHCC-----------------------cHHHHHHHHHHHHHhC--------CCHHH
Confidence 2221 11112233333333333221 01334 5555554443 23568
Q ss_pred HHHHHHHHHHHHHcccccccC--cchhcc----cchHHHHHHhcCCC--ChHHHHHHHHHHHhhcC
Q 005008 213 NRKILRCLLSWVRAGCFTEIS--QGSLAA----HPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (719)
Q Consensus 213 ~~~~l~c~~sWi~~~~~~~~~--~~~~~~----~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~ 270 (719)
+..+++++..++.- .+ ...+.. ..+.+.+...+.|+ ++++.|-+++..+....
T Consensus 148 R~~~~~~l~~~l~~-----~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 148 REECAEWLAIILEK-----WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHTT----------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 88999999988874 23 222222 34667777777754 67888888887776543
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=86.27 E-value=76 Score=37.25 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHHHhc-ChH-HHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHH
Q 005008 18 HDTESCNRVAANQWLVQFQQ-TDA-AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLV 95 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~-s~~-aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~ 95 (719)
.++|.+.|+-.--||..+-+ .|+ +-..+..+...-.. .++.+|-.|..||-. |+ .++..+.+-..+..
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d---~Np~IRaLALRtLs~-Ir------~~~i~e~l~~~lkk 147 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTN---SSPVVRALAVRTMMC-IR------VSSVLEYTLEPLRR 147 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHc-CC------cHHHHHHHHHHHHH
Confidence 46677888888889988766 555 65556666644332 356788777777753 11 11222333333322
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhcc---CCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhc
Q 005008 96 AAKRFSSGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (719)
Q Consensus 96 ~l~~~~~~~~~v~~kL~~ala~l~~~~~~---W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE 159 (719)
.+ ...+++||++-+.+++.++-..+. =.++++.+...+... ++......+..|..+.++
T Consensus 148 ~L---~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 148 AV---ADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred Hh---cCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHh
Confidence 22 346689999999999888765442 224566777766532 344455556656555543
No 44
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.70 E-value=10 Score=35.32 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=60.5
Q ss_pred HHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc-cCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc
Q 005008 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (719)
Q Consensus 45 ~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~-~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~ 123 (719)
...+|.+++ ...|+.|...++.-+..+ |+-+-......++. ++..+.+ ..++.++.-.|.+++.++.+..
T Consensus 30 i~~LL~s~~------~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~-Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSKS------AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA-LLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCCC------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 446776543 388999999999999986 87775555444444 6677754 4567788888899999998888
Q ss_pred cCCChHHHHHH
Q 005008 124 EHGKPIEKLFY 134 (719)
Q Consensus 124 ~W~~~i~~li~ 134 (719)
+||++.+++..
T Consensus 101 ~~p~l~Rei~t 111 (165)
T PF08167_consen 101 GKPTLTREIAT 111 (165)
T ss_pred CCCchHHHHhh
Confidence 99998877643
No 45
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.94 E-value=98 Score=33.83 Aligned_cols=196 Identities=16% Similarity=0.183 Sum_probs=101.9
Q ss_pred hhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHH
Q 005008 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (719)
Q Consensus 145 ~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi 224 (719)
.+.++++++..+.|.+.. .+..+++-|..++.....|+ +++....-.++++..-|
T Consensus 46 lMk~iMRvl~~~~e~~~p----------------------~~~~il~~L~~il~~v~kNP---snP~FnHylFEsi~~li 100 (435)
T PF03378_consen 46 LMKCIMRVLSVLQEDILP----------------------IAVEILQHLTAILKEVSKNP---SNPRFNHYLFESIGALI 100 (435)
T ss_dssp HHHHHHHHHHHSTTTTGG----------------------GHHHHHHHHHHHHHHHHTS------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH----------------------HHHHHHHHHHHHHHHHHhCC---CCcchhhhHHHHHHHHH
Confidence 467888888887777642 12333333333333222221 23456677788888889
Q ss_pred HcccccccCcchh--cccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCC--Ch---hHHHHHhhhhhHHHchhhhhhc
Q 005008 225 RAGCFTEISQGSL--AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE--GL---PQALLCRVPFLKELLLLPALTD 295 (719)
Q Consensus 225 ~~~~~~~~~~~~~--~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~--~~---~~~l~~~~~~l~~~~~~~a~~~ 295 (719)
++.|. -+.+.+ ....+++.+-..|+++ +-..-+...+.-+++.++ .+ ...+++-++ ...+ .
T Consensus 101 r~~~~--~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll-------~p~l-W 170 (435)
T PF03378_consen 101 RFVCE--ADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL-------SPAL-W 170 (435)
T ss_dssp HHS-G--GGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT-------SGGG-G
T ss_pred HhccC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc-------Ccch-h
Confidence 88642 122211 1344556555666644 556667777777776554 22 222333222 1111 1
Q ss_pred CchhHHhHHHHHHHHHHHhchHHHHhCC--hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhh
Q 005008 296 GDEKVIGGLACLMSEIGQAAPSLIVEAS--PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (719)
Q Consensus 296 ~d~e~~~~l~~l~~~~~e~~~~~l~~~~--~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~ 373 (719)
+....+-++.|++.++.+.....+..+. +.++..++-|+. ... -....|+....+.+.+ +
T Consensus 171 e~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~---sk~----~D~~gF~LL~~iv~~~---p-------- 232 (435)
T PF03378_consen 171 ERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIA---SKA----NDHYGFDLLESIVENL---P-------- 232 (435)
T ss_dssp GSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT----TT----CHHHHHHHHHHHHHHS------------
T ss_pred ccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHC---CCC----cchHHHHHHHHHHHHC---C--------
Confidence 1223468889999999888888775432 234555555444 321 1133555433343332 1
Q ss_pred hhHHhhHHHHHHHHHHHHHHhc
Q 005008 374 HVEDMFFSVFSALLDALLLRAQ 395 (719)
Q Consensus 374 ~~~~~~~~~~~~Lv~~l~~k~~ 395 (719)
.+.+.|++..++..++.|++
T Consensus 233 --~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 233 --PEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp --HHHHGGGHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHh
Confidence 23456777788888888876
No 46
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.85 E-value=49 Score=40.86 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=55.6
Q ss_pred chhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCChhHHHHHhhhhhH
Q 005008 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (719)
Q Consensus 208 ~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~ 285 (719)
+..+++..|++|+..-+.. ++..+.+...-..+-.-+.|. .++++|+|.+...+-.++++....+..+.
T Consensus 828 ~~ialRtkAlKclS~ive~------Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~--- 898 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEA------DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQII--- 898 (1692)
T ss_pred chHHHHHHHHHHHHHHHhc------ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHH---
Confidence 3468999999999987764 444333333334444444443 46888988887766655554433333221
Q ss_pred HHchhhhhhcCchhHHhHHHHHHHHHHHhch
Q 005008 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAAP 316 (719)
Q Consensus 286 ~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~ 316 (719)
++ +.+...-+.+...|++.+++++++
T Consensus 899 er-----IlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 899 ER-----ILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hh-----cCCCchhHHHHHHHHHHHHHHhCC
Confidence 12 222233456677777777777654
No 47
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=74.28 E-value=1.3e+02 Score=32.98 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHH
Q 005008 544 SNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (719)
Q Consensus 544 ~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l 623 (719)
-.+..+.+..+.++.+..+.....+..++.+++.+...+..... -++=+..++..+|.+.. .+++..+..-++.||
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~---gF~LL~~iv~~~p~~~l-~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY---GFDLLESIVENLPPEAL-EPYLKQIFTLLLTRL 251 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH---HHHHHHHHHHHS-HHHH-GGGHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH---HHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHH
Confidence 36667788888888988876555777788877777655443333 34556667888888754 678889999999988
Q ss_pred Hh
Q 005008 624 GK 625 (719)
Q Consensus 624 ~~ 625 (719)
++
T Consensus 252 q~ 253 (435)
T PF03378_consen 252 QS 253 (435)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.01 E-value=1.8e+02 Score=33.76 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=21.8
Q ss_pred HHHHHhhccCCCCCchhhhhhHHHHHHHHH
Q 005008 330 ADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (719)
Q Consensus 330 l~~ll~~~~~p~~d~~v~~~~~~FW~~l~e 359 (719)
=..++.|..+| |..+...|+|.-|.+..
T Consensus 352 r~tIleCL~Dp--D~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 352 RSTILECLKDP--DVSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHhcCC--cHHHHHHHHHHHHHHhc
Confidence 34688999998 77888889988777654
No 49
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.68 E-value=1.8e+02 Score=33.70 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=36.9
Q ss_pred HHHHhcCCCC--hHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchH
Q 005008 245 FVFNSLQVQS--SFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPS 317 (719)
Q Consensus 245 ~~~~~l~~~~--~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~ 317 (719)
.+.++|.+++ +...|+|....++.... +..+...++. .+..-|+|+...++.-.++++|.|.+
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~N--v~~mv~eLl~--------fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNESN--VRVMVKELLE--------FLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHHHHHHHHH--------HHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 4556777654 45667777777765432 2223332222 22233667777777778888888754
No 50
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=73.23 E-value=3.1e+02 Score=36.21 Aligned_cols=227 Identities=19% Similarity=0.136 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCh-HH----------HHHHHHhhcCCCCCCCcchhHHHHHhHHHHHH
Q 005008 6 QIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTD-AA----------WEIATSILTSDRQSFLTDFEVEFFAAQILKRK 73 (719)
Q Consensus 6 ~~~v~~av~~ly~~-~~~~~~~~A~~~L~~fq~s~-~a----------W~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~k 73 (719)
..+|..+|..|-+. ++++.|++|-..|..|-+.. +. -.....+|.++ +..+|--|+.+|.+.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg------~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG------TLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC------CHHHHHHHHHHHHHH
Confidence 67788999998643 25778888999999987654 32 23344555443 347787888777654
Q ss_pred hhcccCCCChhhHHH-HHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh--c-cC------CChHHHHHHHhhhc
Q 005008 74 IQNEGYYLQSAAKDA-LLN----ALLVAAKRFSSGPPQLLTQICLALSALILRA--V-EH------GKPIEKLFYSLQNL 139 (719)
Q Consensus 74 i~~~~~~l~~~~~~~-Lr~----~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~--~-~W------~~~i~~li~~l~~~ 139 (719)
-.+ ++.+.. ++. -|+..|. .|+...+..-+.+|-.++... . .| +..|+.++..++++
T Consensus 86 S~~------e~nk~~Iv~~GaIppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 86 CKE------EDLRVKVLLGGCIPPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred hcC------HHHHHHHHHcCChHHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 321 111111 111 2233332 455445555555666665432 1 13 46778888887663
Q ss_pred cCCCch--hHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHh-chhHHHHHHHHHhhcccCCCCCcchhhhHHHH
Q 005008 140 QSQDNG--NMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKI 216 (719)
Q Consensus 140 ~~~~~~--~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~ 216 (719)
.. .+. .....-.|..|+-.- +.+...+ +.. ..+.+++++ .+. +..++..+
T Consensus 157 sk-~d~~L~~~Av~AL~nLs~~~-----------en~~~~I---IeaGaVp~LV~LL----sS~--------d~~lQ~eA 209 (2102)
T PLN03200 157 NK-QDKVVEGLLTGALRNLCGST-----------DGFWSAT---LEAGGVDILVKLL----SSG--------NSDAQANA 209 (2102)
T ss_pred ch-hhHHHHHHHHHHHHHHhcCc-----------cchHHHH---HHcCCHHHHHHHH----cCC--------CHHHHHHH
Confidence 21 111 112223333333211 1111111 111 345555554 321 13445555
Q ss_pred HHHHHHHHHcccccccCcchhcccchHHHHHHhcCC---CChHHHHHHHHHHHhhcCCChhHHH
Q 005008 217 LRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQAL 277 (719)
Q Consensus 217 l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~---~~~~~~a~~~l~eil~~~~~~~~~l 277 (719)
..++..=.... .-+...+.....++.+.+.|.+ +.+++.|+.+|..+.+.+.+..+.+
T Consensus 210 a~aLa~Lass~---ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~I 270 (2102)
T PLN03200 210 ASLLARLMMAF---ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAI 270 (2102)
T ss_pred HHHHHHHHcCC---hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 54443322210 1122334456678888888863 3568999999999988765444433
No 51
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=73.23 E-value=1.2e+02 Score=33.63 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hcChHHHHHHH----HhhcCCCCCCCcchhHHHHHhHHHHHHhhcccC
Q 005008 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQF-QQTDAAWEIAT----SILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY 79 (719)
Q Consensus 5 ~~~~v~~av~~ly~~~~~~~~~~A~~~L~~f-q~s~~aW~~~~----~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~ 79 (719)
..+++.++++.|..++....|=.|-+.|.++ ++.|+-...|. .|.... +-.+-.||-.||-..
T Consensus 300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~------Nr~IstyAITtLLKT------ 367 (898)
T COG5240 300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDE------NRTISTYAITTLLKT------ 367 (898)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcc------cccchHHHHHHHHHc------
Confidence 4566777788877777777888888888886 66777655554 344332 336777887777432
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCCChHHHHHHHhh
Q 005008 80 YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQ 137 (719)
Q Consensus 80 ~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~-~W~~~i~~li~~l~ 137 (719)
=.++....|-+.+-..+...+.|-+.| ...++-.|.+.++ .|...+..+.+.+.
T Consensus 368 -Gt~e~idrLv~~I~sfvhD~SD~FKiI---~ida~rsLsl~Fp~k~~s~l~FL~~~L~ 422 (898)
T COG5240 368 -GTEETIDRLVNLIPSFVHDMSDGFKII---AIDALRSLSLLFPSKKLSYLDFLGSSLL 422 (898)
T ss_pred -CchhhHHHHHHHHHHHHHhhccCceEE---eHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 234444454444444444333343332 2233344444445 46555555555543
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.26 E-value=1.1e+02 Score=35.49 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=67.9
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchH--HHHHHHHHhcCc---CchHHHHHHHHHHH
Q 005008 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR--PLLLFLAAGISE---AVSSNACASALRKI 554 (719)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~--~vl~~l~~~l~~---~~v~~~Aa~al~~l 554 (719)
+..++..+..|.+|.+.. .++.- +|+.+.-+++-+.+.-..+- .+++.|+..|.. =+|+..+-.|+.+|
T Consensus 209 v~slvp~Lv~LL~~E~n~-----DIMl~-AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i 282 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNF-----DIMLL-ACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI 282 (1051)
T ss_pred HHHHHHHHHHHHhccccH-----HHHHH-HHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 445666666677776642 13333 36777766665544333332 366666666654 24889999999999
Q ss_pred HHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchH
Q 005008 555 CEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (719)
Q Consensus 555 c~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~ 606 (719)
.++-++-.+...-+.+.+..++-+ +...|...+.-++..-..+++|+
T Consensus 283 SR~H~~AiL~AG~l~a~LsylDFF-----Si~aQR~AlaiaaN~Cksi~sd~ 329 (1051)
T KOG0168|consen 283 SRRHPKAILQAGALSAVLSYLDFF-----SIHAQRVALAIAANCCKSIRSDE 329 (1051)
T ss_pred HhhccHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcc
Confidence 987766554333333333333222 23346666666666667777776
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.21 E-value=1.9e+02 Score=32.86 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhhhhcccCCccc-chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccchHHHHHHH
Q 005008 457 VETKLFALNVVSEVVLQEGQAF-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFL 534 (719)
Q Consensus 457 ~Ea~L~~l~~i~e~~~~~~~~~-~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L~~vl~~l 534 (719)
+=.+|=.++.+++++...-+.. .-..+..++..=..++.+. ||+++ .-++|.++.+...| --++...++++
T Consensus 636 iI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~pe------VRQS~-FALLGDltk~c~~~v~p~~~~fl~~l 708 (885)
T KOG2023|consen 636 IIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPE------VRQSA-FALLGDLTKACFEHVIPNLADFLPIL 708 (885)
T ss_pred EEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChH------HHHHH-HHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4456777888888887543322 0123666554444555542 67765 69999999877554 22456666666
Q ss_pred HHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHH
Q 005008 535 AAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLL 612 (719)
Q Consensus 535 ~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l 612 (719)
...+... .+...|+.|+-.+|.+-..... |+.-+.+..+...+.....+..-.+..-=.||++--.-|.+ . ...+
T Consensus 709 g~Nl~~~~isv~nNA~WAiGeia~k~g~~~~-~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~-v-Ap~l 785 (885)
T KOG2023|consen 709 GANLNPENISVCNNAIWAIGEIALKMGLKMK-QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEE-V-APHL 785 (885)
T ss_pred hhcCChhhchHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHh-c-chhH
Confidence 5444321 3789999999999988887754 44445555665544333333333333333455554444443 3 5789
Q ss_pred HHHHHHHHHHHHhhhccc
Q 005008 613 ARLLSSSYEAIGKLIDGD 630 (719)
Q Consensus 613 ~~l~~p~~~~l~~~~~~~ 630 (719)
+.++.|-...+.++-++.
T Consensus 786 ~~f~~pWc~sl~~i~Dne 803 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNE 803 (885)
T ss_pred HHHHHHHHHHhcccccch
Confidence 999999999888876654
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.09 E-value=1.6e+02 Score=30.74 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=80.9
Q ss_pred CCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchH-
Q 005008 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR- 528 (719)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~- 528 (719)
.+.+-++.|.++.-|.-..|.++.-.+-..+.-+..++. ..+++... +|..+ .++||... .+||..-.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~------lR~~A-a~Vigt~~---qNNP~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAE------LRELA-ARVIGTAV---QNNPKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHH------HHHHH-HHHHHHHH---hcCHHHHHH
Confidence 456799999999999999998864322111112333444 44555432 66665 59999664 57774222
Q ss_pred ----HHHHHHHHhcCc--Cc-hHHHHHHHHHHHHHHhhcccCCCchH--HHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005008 529 ----PLLLFLAAGISE--AV-SSNACASALRKICEDASALIDEPSNL--EILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (719)
Q Consensus 529 ----~vl~~l~~~l~~--~~-v~~~Aa~al~~lc~~c~~~l~~p~~~--~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (719)
..++.|+..+.. |. ++..|-.|+..+.+.-..-.. .++ +-+..+...+.++..+...+.+++.=++.++
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~--~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD--EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH--HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 133444444442 32 456655555555432221100 011 1123333444454456778889999999999
Q ss_pred ccCCchH
Q 005008 600 GSVSNKE 606 (719)
Q Consensus 600 ~~~p~~~ 606 (719)
+..+.++
T Consensus 240 ~~~~s~~ 246 (342)
T KOG2160|consen 240 QEDKSDE 246 (342)
T ss_pred Hhhhhhh
Confidence 9877665
No 55
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=67.78 E-value=34 Score=27.35 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHH
Q 005008 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKR 72 (719)
Q Consensus 10 ~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ 72 (719)
..+++.+-+++|+..|..|-..|.++. ++++-.....++.++ +..+|..|+..|..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHHH
Confidence 345556646888999999999998663 678888888888543 45999999999984
No 56
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=67.36 E-value=2.1e+02 Score=31.96 Aligned_cols=413 Identities=14% Similarity=0.121 Sum_probs=201.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcChHHHH----HHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHH
Q 005008 18 HDTESCNRVAANQWLVQFQQTDAAWE----IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNAL 93 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~s~~aW~----~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~L 93 (719)
.++|+..|.-|-..|-.+. +++-.. ....+|.+++ +.||==|+..+..-.+.+.+.++.+ +-+.+
T Consensus 89 ~~~n~~~~~lAL~~l~~i~-~~~~~~~l~~~v~~ll~~~~------~~VRk~A~~~l~~i~~~~p~~~~~~----~~~~l 157 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR-TPEMAEPLIPDVIKLLSDPS------PYVRKKAALALLKIYRKDPDLVEDE----LIPKL 157 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHHHHHCHCCHHGG----HHHHH
T ss_pred cCCCHHHHHHHHhhhhhhc-ccchhhHHHHHHHHHhcCCc------hHHHHHHHHHHHHHhccCHHHHHHH----HHHHH
Confidence 3788889999999999887 454333 3556666543 4999999999988777644433322 33444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhc--cCCCchhHHHHHHHhhhhhccccccccccC
Q 005008 94 LVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNL--QSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (719)
Q Consensus 94 l~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~--~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~ 169 (719)
.+.+ ...++.|+.-.+.++..+ +.. .....++.++..+.+. ..++-....++++|..+.-
T Consensus 158 ~~lL---~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~----------- 221 (526)
T PF01602_consen 158 KQLL---SDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP----------- 221 (526)
T ss_dssp HHHT---THSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS-----------
T ss_pred hhhc---cCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc-----------
Confidence 4444 234466766666666655 222 1126667777665421 1122233445555543221
Q ss_pred CChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHh
Q 005008 170 ISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNS 249 (719)
Q Consensus 170 l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~ 249 (719)
........ ..+++.+...+++. ..++...+.+++..+-.. .......++.+...
T Consensus 222 ~~~~~~~~---------~~~i~~l~~~l~s~--------~~~V~~e~~~~i~~l~~~---------~~~~~~~~~~L~~l 275 (526)
T PF01602_consen 222 MEPEDADK---------NRIIEPLLNLLQSS--------SPSVVYEAIRLIIKLSPS---------PELLQKAINPLIKL 275 (526)
T ss_dssp SSHHHHHH---------HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSSS---------HHHHHHHHHHHHHH
T ss_pred CChhhhhH---------HHHHHHHHHHhhcc--------ccHHHHHHHHHHHHhhcc---------hHHHHhhHHHHHHH
Confidence 11111100 34445455444432 235665666666544321 11223455556666
Q ss_pred cCCC--ChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhh-cCchhHHhHHHHHHHHHHHhchHHHHhCChhH
Q 005008 250 LQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALT-DGDEKVIGGLACLMSEIGQAAPSLIVEASPEA 326 (719)
Q Consensus 250 l~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~-~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~ 326 (719)
+.++ .++-.+++++..+...+.+..... ...+ ..+. ++|......-..++..++.. ..+
T Consensus 276 L~s~~~nvr~~~L~~L~~l~~~~~~~v~~~-------~~~~--~~l~~~~d~~Ir~~~l~lL~~l~~~---------~n~ 337 (526)
T PF01602_consen 276 LSSSDPNVRYIALDSLSQLAQSNPPAVFNQ-------SLIL--FFLLYDDDPSIRKKALDLLYKLANE---------SNV 337 (526)
T ss_dssp HTSSSHHHHHHHHHHHHHHCCHCHHHHGTH-------HHHH--HHHHCSSSHHHHHHHHHHHHHH--H---------HHH
T ss_pred hhcccchhehhHHHHHHHhhcccchhhhhh-------hhhh--heecCCCChhHHHHHHHHHhhcccc---------cch
Confidence 6643 357778888888887652111110 0011 1233 55555544444555554432 234
Q ss_pred HHHHHHHHhhc-cCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 005008 327 LALADALLSCV-AFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDG 405 (719)
Q Consensus 327 ~~ll~~ll~~~-~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~ 405 (719)
..+++-|+.+. ..+ |.++....+.--..+++ .+.+.....++.+++-+....+..
T Consensus 338 ~~Il~eL~~~l~~~~--d~~~~~~~i~~I~~la~------------------~~~~~~~~~v~~l~~ll~~~~~~~---- 393 (526)
T PF01602_consen 338 KEILDELLKYLSELS--DPDFRRELIKAIGDLAE------------------KFPPDAEWYVDTLLKLLEISGDYV---- 393 (526)
T ss_dssp HHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH------------------HHGSSHHHHHHHHHHHHHCTGGGC----
T ss_pred hhHHHHHHHHHHhcc--chhhhhhHHHHHHHHHh------------------ccCchHHHHHHHHHHhhhhccccc----
Confidence 44555555555 332 33333322222111111 111222223333333333221100
Q ss_pred CCCCCchHHHHHhHhhHHHHHHHHhcCc--hHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHH
Q 005008 406 MVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVI 483 (719)
Q Consensus 406 ~~d~~d~f~~~R~~~~d~l~~~~~il~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i 483 (719)
+.++...+.+...--.. ...+..++..+.. ..+=+-+-+++|++|-.++.+...+. .+.+
T Consensus 394 -----------~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~----~~~~~~~~~~~wilGEy~~~~~~~~~---~~~~ 455 (526)
T PF01602_consen 394 -----------SNEIINVIRDLLSNNPELREKILKKLIELLED----ISSPEALAAAIWILGEYGELIENTES---APDI 455 (526)
T ss_dssp -----------HCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS----SSSHHHHHHHHHHHHHHCHHHTTTTH---HHHH
T ss_pred -----------cchHHHHHHHHhhcChhhhHHHHHHHHHHHHH----hhHHHHHHHHHhhhcccCCccccccc---HHHH
Confidence 22222333333222111 1245555554432 12234578889999888887764111 3455
Q ss_pred HHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc--cchHHHHHHHHHhcC----cCchHHHHHHHHHH
Q 005008 484 MQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ--TNARPLLLFLAAGIS----EAVSSNACASALRK 553 (719)
Q Consensus 484 ~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p--~~L~~vl~~l~~~l~----~~~v~~~Aa~al~~ 553 (719)
+..+........+. ++ +.++......+..+| +.-+.+++++.+... +++|+.+|..-++-
T Consensus 456 ~~~l~~~~~~~~~~------vk----~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 456 LRSLIENFIEESPE------VK----LQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp HHHHHHHHTTSHHH------HH----HHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccHH------HH----HHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 55543333222221 33 245666667667777 445688888876665 46799998765543
No 57
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.42 E-value=22 Score=31.84 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHHhhHHHHHhCccchHHHHHHHHHhcCcCchHHHHHHHH
Q 005008 509 LADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (719)
Q Consensus 509 ~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al 551 (719)
++.++++|..|+....-.-.+.++.+++.+++|.++..|+..|
T Consensus 106 ~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 106 ALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 4799999999886432222347888888889999998888754
No 58
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=64.15 E-value=1.3e+02 Score=28.24 Aligned_cols=106 Identities=9% Similarity=0.066 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhHHHHHhCccch-HHHHHHHHHhcCc--CchHHHHHHHHHHHHHH-hhcccCCCchHHHHHHHHHHHH
Q 005008 504 IVYRSLADVIGSYSKWISAFQTNA-RPLLLFLAAGISE--AVSSNACASALRKICED-ASALIDEPSNLEILMWIGEALE 579 (719)
Q Consensus 504 l~~~t~~~~ig~y~~~~~~~p~~L-~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~-c~~~l~~p~~~~~l~~~~~~l~ 579 (719)
+|+++ +.++..+. ..+.--. +..+..++..+.| |+++..|...|..+... .+.. ..+.|..+...+.
T Consensus 41 VR~~a-l~~Ls~Li---~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~-----i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 41 VRKTA-LLVLSHLI---LEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI-----IYNNFPELISSLN 111 (178)
T ss_pred HHHHH-HHHHHHHH---HcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH-----HHHHHHHHHHHHh
Confidence 66654 56776553 2222111 2233555566666 46999999999988766 3322 3334444444443
Q ss_pred hc-------CCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 005008 580 KR-------HLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYE 621 (719)
Q Consensus 580 ~~-------~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~ 621 (719)
.. ..+.+.+..+++-+ ++.++.++.+...++++++-+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~I~~fl---l~~i~~d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 112 NCYEHPVYGPLSREKRKKIYKFL---LDFIDKDKQKESLVEKLCQRFLN 157 (178)
T ss_pred CccccccccccCHHHHHHHHHHH---HHHcCcHHHHHHHHHHHHHHHHH
Confidence 21 24445566666554 44454344334555555555443
No 59
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=63.93 E-value=68 Score=27.25 Aligned_cols=91 Identities=11% Similarity=0.117 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCc---C---chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 528 RPLLLFLAAGISE---A---VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 528 ~~vl~~l~~~l~~---~---~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
-.+++.+-..+++ . .-+.+|-+++..+.+-|++.+. ...+.+..+.+.-.. .++-+...+++-...+..
T Consensus 10 Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~--~~~pQI~a~L~sal~---~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 10 LGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS--SARPQIMACLQSALE---IPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhC---ChhhHHHHHHHHHHHHHH
Confidence 3444455444544 1 2578899999999998888874 277777766654221 225688889999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 005008 602 VSNKELKNNLLARLLSSSYEAIG 624 (719)
Q Consensus 602 ~p~~~~~~~~l~~l~~p~~~~l~ 624 (719)
+++++. ...+.++...+++.|.
T Consensus 85 L~~~~l-~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 85 LDEEDL-GPLLDQIFAILLPLWD 106 (107)
T ss_pred CCHHHH-HHHHHHHHHHHHHhcc
Confidence 998875 5667776666665543
No 60
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=63.20 E-value=81 Score=26.86 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCcCc------hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 005008 527 ARPLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (719)
Q Consensus 527 L~~vl~~l~~~l~~~~------v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (719)
+-.+++.+-..++|++ -+.+|-+|+..+.+-|++++. .+.+.+..+.+.-. -.++=+...+++-...+.
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL---~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSAL---EIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHH
Confidence 4456666666666643 378899999999999998874 37777776655311 134468889999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH
Q 005008 601 SVSNKELKNNLLARLLSSSYEAI 623 (719)
Q Consensus 601 ~~p~~~~~~~~l~~l~~p~~~~l 623 (719)
.+++++. ...+++.+.-+++.|
T Consensus 84 ~L~~~~l-~~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEEL-GPLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHH-HHHHHHHHHHHHHhc
Confidence 9998775 566766666666554
No 61
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=63.15 E-value=1.9e+02 Score=29.87 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=57.7
Q ss_pred ccchHHHHHHHHHhcCcCc-hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 005008 524 QTNARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (719)
Q Consensus 524 p~~L~~vl~~l~~~l~~~~-v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (719)
|...-.+|.-|+.++.+|. ++-.--.++..+|.+|+.... ..+.|-++-.-+...+.+.+++..++.++..++..-
T Consensus 102 ~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~ 178 (378)
T KOG2753|consen 102 ASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDN 178 (378)
T ss_pred cccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 3455678888889998877 888888999999999996532 334444554445566788899999999999998654
Q ss_pred C
Q 005008 603 S 603 (719)
Q Consensus 603 p 603 (719)
.
T Consensus 179 k 179 (378)
T KOG2753|consen 179 K 179 (378)
T ss_pred c
Confidence 3
No 62
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=62.46 E-value=1.4e+02 Score=28.03 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCC-ChhHHHHHhhhhhHHH
Q 005008 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE-GLPQALLCRVPFLKEL 287 (719)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~~ 287 (719)
.++..++-++.-...- .|. ...+.++.++..|.|+ .++..|+-++..++.+.. +....++..++.
T Consensus 3 ~vR~n~i~~l~DL~~r-----~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~---- 70 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIR-----YPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK---- 70 (178)
T ss_pred HHHHHHHHHHHHHHHh-----CcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH----
Confidence 4677778887766431 121 1357888999999976 468899999999988654 222223232222
Q ss_pred chhhhhhcCchhHHhHHHHHHHHHHHh
Q 005008 288 LLLPALTDGDEKVIGGLACLMSEIGQA 314 (719)
Q Consensus 288 ~~~~a~~~~d~e~~~~l~~l~~~~~e~ 314 (719)
.+.++|.+....-...|.++...
T Consensus 71 ----~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 ----LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred ----HHcCCCHHHHHHHHHHHHHHHHh
Confidence 44466666544444556666555
No 63
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.88 E-value=3.3e+02 Score=31.97 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh
Q 005008 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (719)
Q Consensus 681 ~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~ 716 (719)
+-...|+|..++.. .|..+||-+|.|+-+++-.
T Consensus 333 v~ealPlL~~lLs~---~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 333 VMEALPLLTPLLSY---QDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHh
Confidence 34567999999974 7889999999999888754
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.45 E-value=21 Score=28.57 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHH
Q 005008 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (719)
Q Consensus 8 ~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL 70 (719)
++...+..+..++|+..|.+|-..|.++. +++++.....++.+++ +..+|.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD-----DEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S-----SHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC-----cHHHHHHHHhhc
Confidence 34444555556889999999999999886 6899999999998764 236688777765
No 65
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=57.20 E-value=1.6e+02 Score=27.20 Aligned_cols=104 Identities=18% Similarity=0.082 Sum_probs=70.9
Q ss_pred CCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHH
Q 005008 142 QDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLL 221 (719)
Q Consensus 142 ~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~ 221 (719)
++......+.+++.+.++.+. +.+.++....+..+.+.++... +..+...++.++.
T Consensus 38 ~~~~rw~G~~Ll~~~~~~~~~-----------------e~l~~~~~~W~~~Ll~~L~~~~-------~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 38 SAYSRWAGLCLLKVTVEQCSW-----------------EILLSHGSQWLRALLSILEKPD-------PPSVLEAAIITLT 93 (165)
T ss_pred ChhhHHHHHHHHHHHHHHhhH-----------------HHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHH
Confidence 355678999999999988631 3355667777888888887632 2456778888888
Q ss_pred HHHHcccccccCc---ch--hcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCC
Q 005008 222 SWVRAGCFTEISQ---GS--LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE 271 (719)
Q Consensus 222 sWi~~~~~~~~~~---~~--~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~ 271 (719)
.-+.+.. +.|. +. .....+++.+++.++++...+.+++++.+++..++
T Consensus 94 ~l~~~~~--~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 94 RLFDLIR--GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHhc--CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 7665532 2232 11 12344666777777667788899999999998775
No 66
>PRK09687 putative lyase; Provisional
Probab=56.58 E-value=2.3e+02 Score=28.83 Aligned_cols=124 Identities=11% Similarity=0.002 Sum_probs=73.4
Q ss_pred cCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 005008 431 LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (719)
Q Consensus 431 l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~ 510 (719)
+|.+..+..+...+ ...+|.-...+.++|+.+.. ++ +.+...+.....++.. .||..+ .
T Consensus 155 ~~~~~ai~~L~~~L-----~d~~~~VR~~A~~aLg~~~~-----~~----~~~~~~L~~~L~D~~~------~VR~~A-~ 213 (280)
T PRK09687 155 INDEAAIPLLINLL-----KDPNGDVRNWAAFALNSNKY-----DN----PDIREAFVAMLQDKNE------EIRIEA-I 213 (280)
T ss_pred cCCHHHHHHHHHHh-----cCCCHHHHHHHHHHHhcCCC-----CC----HHHHHHHHHHhcCCCh------HHHHHH-H
Confidence 45555566555543 23567777788888888722 11 2333333333355543 255554 5
Q ss_pred HHHHhhHHHHHhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHH
Q 005008 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEE 590 (719)
Q Consensus 511 ~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (719)
+.+|++. + +.+++.|++.+.++.++..|+.|+..|-. |..++.|..+... ..+...+..
T Consensus 214 ~aLg~~~-----~----~~av~~Li~~L~~~~~~~~a~~ALg~ig~--------~~a~p~L~~l~~~----~~d~~v~~~ 272 (280)
T PRK09687 214 IGLALRK-----D----KRVLSVLIKELKKGTVGDLIIEAAGELGD--------KTLLPVLDTLLYK----FDDNEIITK 272 (280)
T ss_pred HHHHccC-----C----hhHHHHHHHHHcCCchHHHHHHHHHhcCC--------HhHHHHHHHHHhh----CCChhHHHH
Confidence 8888753 2 36777888888888888888877776643 3356666666542 225556666
Q ss_pred HHHHHH
Q 005008 591 VVGAIS 596 (719)
Q Consensus 591 l~eai~ 596 (719)
.++++.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 666653
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.08 E-value=78 Score=36.03 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHH
Q 005008 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWI 574 (719)
Q Consensus 504 l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~ 574 (719)
+|..++ -++ -.-|-..|+-|.++++-|.+.|.||+ |+++|..-|..+++..++.... ..|.|..+
T Consensus 160 vRKkAI-l~l---ykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--LAP~ffkl 226 (877)
T KOG1059|consen 160 VRKKAI-LLL---YKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--LAPLFYKL 226 (877)
T ss_pred HHHHHH-HHH---HHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--ccHHHHHH
Confidence 566543 222 24445679999999999999999854 8888777666666666654431 44444443
No 68
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=53.44 E-value=31 Score=21.60 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHHHHhhhhc
Q 005008 451 PIPWKEVETKLFALNVVSEVV 471 (719)
Q Consensus 451 ~~~W~~~Ea~L~~l~~i~e~~ 471 (719)
..+|.-++++.++++.+++.+
T Consensus 11 D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp -SSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhhC
Confidence 467999999999999998753
No 69
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=52.50 E-value=49 Score=33.97 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhhhhcccCCccc----chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc----cc
Q 005008 455 KEVETKLFALNVVSEVVLQEGQAF----DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ----TN 526 (719)
Q Consensus 455 ~~~Ea~L~~l~~i~e~~~~~~~~~----~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p----~~ 526 (719)
.-.|-++|+|+.|+.-...-.+.. .+.-++.++. .+.++. .+++. +.|+++.+++ .++| +.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~--ss~~~i------smlRn-~TWtLSNlcR--GknP~P~w~~ 240 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL--SSAIHI------SMLRN-ATWTLSNLCR--GKNPPPDWSN 240 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH--hccchH------HHHHH-hHHHHHHhhC--CCCCCCchHH
Confidence 346889999999985322100000 0222333332 233322 13343 3599999887 4454 25
Q ss_pred hHHHHHHHHHhc--CcCchHHHHHHHHHHHHH
Q 005008 527 ARPLLLFLAAGI--SEAVSSNACASALRKICE 556 (719)
Q Consensus 527 L~~vl~~l~~~l--~~~~v~~~Aa~al~~lc~ 556 (719)
+..+++.+.+-+ .||++-.-|+.|+..+.+
T Consensus 241 isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 241 ISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 777888877655 468899999999999974
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=49.78 E-value=4.2e+02 Score=29.71 Aligned_cols=370 Identities=12% Similarity=0.122 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCC--hHHHHHHHHHHHhhcCC-ChhHHHHHhhhhhHHHc
Q 005008 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELL 288 (719)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~--~~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~~~ 288 (719)
.-..+=.|++-+-+.. +.....|.+..+=+.+.+++ -+++|+-++-.++.... .....+.++.+ +.+
T Consensus 344 ~smaA~sCLqlfaq~~-------gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qal---p~i 413 (858)
T COG5215 344 PSMAASSCLQLFAQLK-------GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQAL---PGI 413 (858)
T ss_pred hhhhHHHHHHHHHHHh-------hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhh---HHH
Confidence 3445667777766642 12234567777777788775 47888888888776542 12222333221 111
Q ss_pred hhhhhhcCchh--HHhHHHHHHHHHHHhchHHHHhCChhHH-HHHHHHHhhccCCCCCchhhhhhHHHHH--HHHHHHhc
Q 005008 289 LLPALTDGDEK--VIGGLACLMSEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWS--TLASYILG 363 (719)
Q Consensus 289 ~~~a~~~~d~e--~~~~l~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~--~l~e~l~~ 363 (719)
.+ .. . |.- .-..-+.-|-.++++....| +.-+|.. ..-..+..++.+|- ++-- .-|. .|.+++-.
T Consensus 414 ~n-~m-~-D~~l~vk~ttAwc~g~iad~va~~i-~p~~Hl~~~vsa~liGl~D~p~----~~~n--csw~~~nlv~h~a~ 483 (858)
T COG5215 414 EN-EM-S-DSCLWVKSTTAWCFGAIADHVAMII-SPCGHLVLEVSASLIGLMDCPF----RSIN--CSWRKENLVDHIAK 483 (858)
T ss_pred HH-hc-c-cceeehhhHHHHHHHHHHHHHHHhc-CccccccHHHHHHHhhhhccch----HHhh--hHHHHHhHHHhhhh
Confidence 11 00 1 110 00111122333333333222 2112221 11223444566651 1111 2243 35565521
Q ss_pred cchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHH------HH-hHhhHHHHHHHHhcCch--
Q 005008 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ------FR-MNLVELLVDICQLLRSA-- 434 (719)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~------~R-~~~~d~l~~~~~il~~~-- 434 (719)
-. ........++|..+++.+++-...-.+++. ---..|.. |- ..+.|++...|..+-..
T Consensus 484 a~-------~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n-----~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~ 551 (858)
T COG5215 484 AV-------REVESFLAKFYLAILNALVKGTELALNESN-----LRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLD 551 (858)
T ss_pred hh-------ccccchhHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 11 123456678899999988775433222110 00001110 00 12334444433332111
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHH-HHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 005008 435 TFIQKVFFGSWGSANVPIPWKEVETK-LFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (719)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~W~~~Ea~-L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~i 513 (719)
.+++...+.+... ....-+++-+- +-.|.+|....+++-+.. -+.++.++.++.+...+.. .|.. + ...|
T Consensus 552 ~~isv~~q~l~~e--D~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~-~~~d-V----~~aI 622 (858)
T COG5215 552 ECISVLGQILATE--DQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTT-AFGD-V----YTAI 622 (858)
T ss_pred HHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCch-hhhH-H----HHHH
Confidence 1222222211110 01123333332 334455555444432212 3568887766544332210 0111 2 3445
Q ss_pred HhhHHHHHhC-ccchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHH
Q 005008 514 GSYSKWISAF-QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEE 589 (719)
Q Consensus 514 g~y~~~~~~~-p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~ 589 (719)
|.++.-+... .+|+++..+|+.+.|+..+ |...|.--+-.+...-...+. + +-+.+. .+.+.+.+.....+-+-
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~-~-y~d~~ms~LvQ~lss~~~~R~lKP 700 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN-I-YADVLMSSLVQCLSSEATHRDLKP 700 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH-H-HHHHHHHHHHHHhcChhhccccch
Confidence 5555544433 4689999999999997543 556666666677766665553 3 445544 34444544444433333
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccc
Q 005008 590 EVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGD 630 (719)
Q Consensus 590 ~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~ 630 (719)
.++...|-|+.++ ...++.+++-++.-+++.-+..
T Consensus 701 aiLSvFgDIAlai------ga~F~~YL~~im~L~qqas~~~ 735 (858)
T COG5215 701 AILSVFGDIALAI------GANFESYLDMIMMLFQQASELD 735 (858)
T ss_pred HHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHhccC
Confidence 4444444444443 2234455555555555554443
No 71
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=49.14 E-value=3.1e+02 Score=31.03 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=52.7
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCc-CchHHHHHHHHHHHHHHh
Q 005008 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE-AVSSNACASALRKICEDA 558 (719)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~-~~v~~~Aa~al~~lc~~c 558 (719)
.++|++++.++.+..... .+..+| +..+-+|++|+.-.--|...++..++..+.. |+.+...-..+..+.+--
T Consensus 190 F~qIF~lc~qiLE~~~~~-----SLi~AT-Lesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~ 263 (1053)
T COG5101 190 FPQIFGLCKQILEYSRDE-----SLIEAT-LESLLRFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLG 263 (1053)
T ss_pred HHHHHHHHHHHHHhcCCh-----HHHHHH-HHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhc
Confidence 578999888776543322 366666 6899999999977666788899999877765 776666666666666543
Q ss_pred h
Q 005008 559 S 559 (719)
Q Consensus 559 ~ 559 (719)
+
T Consensus 264 ~ 264 (1053)
T COG5101 264 R 264 (1053)
T ss_pred c
Confidence 3
No 72
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=46.04 E-value=2.3e+02 Score=29.35 Aligned_cols=135 Identities=17% Similarity=0.179 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 005008 544 SNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSY 620 (719)
Q Consensus 544 ~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~ 620 (719)
+-.||.|+.++++.... ..+.....|.|.++.. ....+.++..+=++|.|+.-.+..+. ...=-..+.|++
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~-----s~~~~V~eQavWALGNiAGDS~~~RD-~vL~~galeplL 205 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS-----STEDDVREQAVWALGNIAGDSEGCRD-YVLQCGALEPLL 205 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc-----CchHHHHHHHHHHhccccCCchhHHH-HHHhcCchHHHH
Confidence 44889999999854432 2222345666666643 22456799999999999877655432 122224566666
Q ss_pred HHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhcccc
Q 005008 621 EAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENG 700 (719)
Q Consensus 621 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~ 700 (719)
.-+.. . ..+ ..++..+... |+.+-|.- .+.|--..+.+..|+|..++ |..|+
T Consensus 206 ~ll~s----s-----~~~----ismlRn~TWt---LSNlcRGk---------nP~P~w~~isqalpiL~KLi---ys~D~ 257 (526)
T COG5064 206 GLLLS----S-----AIH----ISMLRNATWT---LSNLCRGK---------NPPPDWSNISQALPILAKLI---YSRDP 257 (526)
T ss_pred HHHHh----c-----cch----HHHHHHhHHH---HHHhhCCC---------CCCCchHHHHHHHHHHHHHH---hhcCH
Confidence 55442 1 000 0111111111 23332321 23344467888899998877 46899
Q ss_pred HHHHHHHHHHHH
Q 005008 701 NLSTAACRALSL 712 (719)
Q Consensus 701 ~vie~~c~~~~~ 712 (719)
+|+-.+|=.+.+
T Consensus 258 evlvDA~WAiSY 269 (526)
T COG5064 258 EVLVDACWAISY 269 (526)
T ss_pred HHHHHHHHHHHH
Confidence 998888865543
No 73
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=45.23 E-value=1.1e+02 Score=25.21 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=47.7
Q ss_pred HHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 005008 531 LLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (719)
Q Consensus 531 l~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (719)
++-.+..+++|. ++.+|-..++++.++.. . .....+.++.+...... .-+....+..+.|++.++...|.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~-~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--E-PVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--c-chhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHChHH
Confidence 444556667765 78999999999998776 1 11245555555443222 125567899999999999988764
No 74
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.83 E-value=5.7e+02 Score=30.22 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=69.6
Q ss_pred HHhhHHHHHhC--c--cchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChh
Q 005008 513 IGSYSKWISAF--Q--TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLE 586 (719)
Q Consensus 513 ig~y~~~~~~~--p--~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~ 586 (719)
+....+|++.+ . .+...++..++..+.|.+ +--.|-+++..+|+--.+. .++.+...|..- +.....+
T Consensus 748 L~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-----il~dL~e~Y~s~-k~k~~~d 821 (982)
T KOG4653|consen 748 LQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-----ILPDLSEEYLSE-KKKLQTD 821 (982)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-----hHHHHHHHHHhc-ccCCCcc
Confidence 34456888743 2 256789999999998744 6788888888998863332 566677777652 3344467
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 005008 587 DEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (719)
Q Consensus 587 ~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (719)
.+.++=|+++.++.+.++ ......+++++..-..+.
T Consensus 822 ~~lkVGEai~k~~qa~Ge------l~~~y~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 822 YRLKVGEAILKVAQALGE------LVFKYKAVLINTFLSGVR 857 (982)
T ss_pred ceehHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhcC
Confidence 899999999999998744 334444555555444444
No 75
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=44.17 E-value=3.8e+02 Score=27.71 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005008 609 NNLLARLLSSSYEAIGK 625 (719)
Q Consensus 609 ~~~l~~l~~p~~~~l~~ 625 (719)
..||...++|++.++-.
T Consensus 92 ~~YL~~tL~pvI~~i~~ 108 (310)
T cd05134 92 MHYLQVTLKPIIDEICQ 108 (310)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 47899999999988755
No 76
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=42.82 E-value=2.5e+02 Score=26.57 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=53.9
Q ss_pred cCcC--chHHHHHHHHHHHHHHhhcccCC------C--chH-------HHHHHHHHHHH---hcCCChhhHHHHHHHHHH
Q 005008 538 ISEA--VSSNACASALRKICEDASALIDE------P--SNL-------EILMWIGEALE---KRHLPLEDEEEVVGAISL 597 (719)
Q Consensus 538 l~~~--~v~~~Aa~al~~lc~~c~~~l~~------p--~~~-------~~l~~~~~~l~---~~~l~~~~~~~l~eai~~ 597 (719)
+.|| +++.+|+.++..+-+.++..+.. + .+. ..+..++..|. ...-.......++++++.
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3454 58899988888877665543311 0 111 23445555443 122234467799999999
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 005008 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (719)
Q Consensus 598 vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~ 629 (719)
++++.|-++... .++.+++..+...+..
T Consensus 129 Lv~~tPY~rL~~----~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 129 LVQATPYHRLPP----GLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHccCChhhcCH----hHHHHHHHHHHHHHhc
Confidence 999999987643 4555555555555554
No 77
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=42.73 E-value=44 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=20.1
Q ss_pred HHHHHHHhcCc--CchHHHHHHHHHHHHH
Q 005008 530 LLLFLAAGISE--AVSSNACASALRKICE 556 (719)
Q Consensus 530 vl~~l~~~l~~--~~v~~~Aa~al~~lc~ 556 (719)
+++.|+.-+.+ ++++..|+.|+.++|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45556666665 4589999999999973
No 78
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=41.48 E-value=4.1e+02 Score=27.53 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHhcC-cCchHHHHHHHHHHHHHH
Q 005008 525 TNARPLLLFLAAGIS-EAVSSNACASALRKICED 557 (719)
Q Consensus 525 ~~L~~vl~~l~~~l~-~~~v~~~Aa~al~~lc~~ 557 (719)
+|..+..+.|+++.. .| +...++..+..+|.+
T Consensus 1 ~~Y~~l~~ll~~s~~~~p-~~~s~~~~l~e~~~~ 33 (313)
T cd05394 1 EYYSSLRSLLLKSPDVQP-ISASAAYILGEVCRD 33 (313)
T ss_pred CchHHHHHHHHhCcccCC-CcccHHHHHHHHHhh
Confidence 356677778887763 34 446666777777765
No 79
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.38 E-value=2.9e+02 Score=30.62 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCcc---ch--HHH
Q 005008 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT---NA--RPL 530 (719)
Q Consensus 456 ~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~---~L--~~v 530 (719)
++|| -++|..|+.+-.+......-...+.++..+...|+. .++..+ .|.+|..+. +.|. +. ..+
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------~v~eQa-vWALgNIag---ds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------DVREQA-VWALGNIAG---DSPDCRDYVLSCGA 195 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------HHHHHH-HHHHhcccc---CChHHHHHHHhhcc
Confidence 5665 588888887654322211000111223344455553 256665 488887653 2232 11 134
Q ss_pred HHHHHHhcCcCc---hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHHHcc
Q 005008 531 LLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALE--KRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 531 l~~l~~~l~~~~---v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~--~~~l~~~~~~~l~eai~~vi~~ 601 (719)
|.-++..+..+. .-+.+..++.+||+.... .| .++.+..+...+. -...+.+......-+++++...
T Consensus 196 l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P---~P-~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP---SP-PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHcCCCC---CC-cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 444444444432 568899999999976541 22 3333333322221 1233566666677777777644
No 80
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=36.44 E-value=6.9e+02 Score=28.39 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=34.5
Q ss_pred HhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhc---CchHHHHHHHHHh
Q 005008 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLL---RSATFIQKVFFGS 444 (719)
Q Consensus 377 ~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il---~~~~~l~~~~~~~ 444 (719)
-..+|++..++..++++++-|+.. .|...+|++-....++ |....+..+...+
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p~---------------vR~~aadl~~sl~~vlk~c~e~~~l~klg~iL 651 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPPD---------------VRIRAADLMGSLAKVLKACGETKELAKLGNIL 651 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCcc---------------HHHHHHHHHHHHHHHHHhcchHHHHHHHhHHH
Confidence 345899999999999999876541 2666777766666554 4444455444433
No 81
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=35.73 E-value=7.7e+02 Score=28.75 Aligned_cols=182 Identities=16% Similarity=0.142 Sum_probs=95.6
Q ss_pred CchHHHHHhHhhHHHHHHHHhcCchH---HH-HHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHH
Q 005008 410 PDGLVQFRMNLVELLVDICQLLRSAT---FI-QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ 485 (719)
Q Consensus 410 ~d~f~~~R~~~~d~l~~~~~il~~~~---~l-~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ 485 (719)
.|+-+.||+-+.++...+...+|... -+ ..++..+.-+- +.++ .+.-..|-+++.+...+.....++ ++.|.+
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Af-qeqt-t~d~vml~gfg~V~~~lg~r~kpy-lpqi~s 802 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAF-QEQT-TEDSVMLLGFGTVVNALGGRVKPY-LPQICS 802 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH-Hhcc-cchhhhhhhHHHHHHHHhhccccc-hHHHHH
Confidence 45557899999999999988887532 11 22222221100 0000 011245777888777665433333 556655
Q ss_pred HHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCcc--chHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcc
Q 005008 486 LVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT--NARPLLLFLAAGISE--AVSSNACASALRKICEDASAL 561 (719)
Q Consensus 486 ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~--~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~ 561 (719)
-+.-..+++++. +|..+ ..++|+.+.-++...+ .+..+=..|.+.+.. |++-..--.|++.|+..-+-.
T Consensus 803 tiL~rLnnksa~------vRqqa-adlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 803 TILWRLNNKSAK------VRQQA-ADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHhcCCChh------HHHHH-HHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 444445555542 56665 5999999998876533 344444444577764 777666666666666554321
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCC
Q 005008 562 IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (719)
Q Consensus 562 l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p 603 (719)
-..|+.-++|-.+..-|.+. ..+.++.-+.-+|.|...-|
T Consensus 876 km~pPi~dllPrltPILknr--heKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNR--HEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred ccCCChhhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcCc
Confidence 11132333222222211111 23345555666666665433
No 82
>PRK10236 hypothetical protein; Provisional
Probab=34.74 E-value=75 Score=31.06 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH---HHhc---ChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc
Q 005008 7 IKVAQAVHVLNHDTESCNRVAANQWLV---QFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (719)
Q Consensus 7 ~~v~~av~~ly~~~~~~~~~~A~~~L~---~fq~---s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~ 77 (719)
+++...+..|-.+.|... +..+-|. .+++ .+.-..--|+++. .+.|+||+.++.+.++..
T Consensus 20 edL~~Lv~~Lt~d~dG~~--R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia---------~elq~fGgnt~~n~lRG~ 85 (237)
T PRK10236 20 EQLANFARLLTHNEKGKT--RLSSVLMRNELFKSMEGHPEQHRRNWQLIA---------GELQHFGGDSIANKLRGH 85 (237)
T ss_pred HHHHHHHHHHhcCCCCCE--eehhhhcccHHHHhhcccchhHHHHHHHHH---------HHHHHhcchHHHHHHhcC
Confidence 567777777765554322 2333333 4555 3332222233442 289999999999888754
No 83
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=34.69 E-value=1.5e+02 Score=28.60 Aligned_cols=62 Identities=13% Similarity=0.275 Sum_probs=47.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcC--hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHH
Q 005008 16 LNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (719)
Q Consensus 16 ly~~~~~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~ 87 (719)
+++-+.|..|+-|..++.+.+.. ++-|.++..|.+++- -|.|++|...|..+.. .+++++..
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~------~E~r~~al~~l~~~~~----~~~~~~~~ 83 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQPE------REYQYVAIDLLRKYKK----FLTPEDLP 83 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchH------HHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 56677899999999999888765 678999999997653 3899999988876543 24555433
No 84
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.38 E-value=9.4e+02 Score=29.39 Aligned_cols=216 Identities=17% Similarity=0.155 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhhccCCC--C-----CchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccC
Q 005008 325 EALALADALLSCVAFPS--E-----DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVD 397 (719)
Q Consensus 325 ~~~~ll~~ll~~~~~p~--~-----d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p 397 (719)
..++++++++.|+|.-| . +-+.+++++.--..+-+. +..+++.......+..|+..|..++..++.+++|.
T Consensus 112 al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~--es~DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~ 189 (1048)
T KOG2011|consen 112 ALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDER--ESGDYPLTSKGPEWKNFRENFCEFLPTLVSQCQYG 189 (1048)
T ss_pred HHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhh--hhccCcCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35789999999999865 1 112233443322222220 00111110012346788999999999999999984
Q ss_pred CCCCCCC-------CC-CCCCchHHHHHhHhhHHHHH----HHHh---cCchHHHHHHHHHhhcCCCCCCChh-HHHHHH
Q 005008 398 ESSFNDD-------GM-VDLPDGLVQFRMNLVELLVD----ICQL---LRSATFIQKVFFGSWGSANVPIPWK-EVETKL 461 (719)
Q Consensus 398 ~~~~~~~-------~~-~d~~d~f~~~R~~~~d~l~~----~~~i---l~~~~~l~~~~~~~~~~~~~~~~W~-~~Ea~L 461 (719)
.--+++. |- .-..-..+.||+-..=+.+. .+.+ ++.. ....-.++-...+....=+ .+|..+
T Consensus 190 s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~--~~~tskQleaEr~k~r~~rarle~Ll 267 (1048)
T KOG2011|consen 190 SCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSH--NDKTSKQLEAERNKSRGNRARLESLL 267 (1048)
T ss_pred CccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhcccccchHHHHHHH
Confidence 4322110 00 00113345666543211111 1111 1100 0000001100000111111 567655
Q ss_pred HHHHHhhhhcccCCcccchhHHHH-HHHHhccCch-hhhhhHHHHHHHHHHHHHHhhHHHHHhCccch--HHHHHHHHHh
Q 005008 462 FALNVVSEVVLQEGQAFDFSVIMQ-LVAVLSASRS-EELKGFMHIVYRSLADVIGSYSKWISAFQTNA--RPLLLFLAAG 537 (719)
Q Consensus 462 ~~l~~i~e~~~~~~~~~~l~~i~~-ll~~l~~~~~-~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L--~~vl~~l~~~ 537 (719)
--..-..+...+ +..++. ++..+.-|-. +-.+ .+| +.+|-..+.|+..-|+++ ..-|.|+--.
T Consensus 268 ~~r~etqe~~d~------i~~mi~~if~sVFVHRYRDV~~---~IR----aiCiqeLgiWi~~yP~~Fl~dsYLKYiGWt 334 (1048)
T KOG2011|consen 268 MLRKETQEQQDE------IESMINDIFDSVFVHRYRDVDP---DIR----AICIQELGIWIKSYPEIFLSDSYLKYIGWT 334 (1048)
T ss_pred HHHHHHHHHHHH------HHHHHHHHhhheeeeecccCch---HHH----HHHHHHHHHHHHhccHHHhcchHHHHhcce
Confidence 555555444431 122222 2222221111 0001 244 257777889999999865 4678888888
Q ss_pred cCcC--chHHHHHHHHHHHHHH
Q 005008 538 ISEA--VSSNACASALRKICED 557 (719)
Q Consensus 538 l~~~--~v~~~Aa~al~~lc~~ 557 (719)
|+|. +|+..+-+|+.+|-+.
T Consensus 335 LsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 335 LSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred eecCccHHHHHHHHHHHHHHhc
Confidence 9885 4899999999998765
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.53 E-value=1e+03 Score=29.54 Aligned_cols=298 Identities=14% Similarity=0.135 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHhc--ChH-----HHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHH
Q 005008 23 CNRVAANQWLVQFQQ--TDA-----AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLV 95 (719)
Q Consensus 23 ~~~~~A~~~L~~fq~--s~~-----aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~ 95 (719)
+.|.+|-+-|+.+-+ +.+ --.+...|+..+ ...||--|..||..-+. --..+|+.+..-.-+.|+-
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds------~a~Vra~Al~Tlt~~L~-~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS------EADVRATALETLTELLA-LVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc------hHHHHHHHHHHHHHHHh-hccCCCcccchhhHhhhhh
Confidence 457788888888755 222 245566666544 34899999999986654 3456788888888889988
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhhcc--CCCchhHHHHHHHhhhhhccccccccccCCC
Q 005008 96 AAKRFSSG--PPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQ--SQDNGNMAVLEMLTVLPEEVIDSQASDCNIS 171 (719)
Q Consensus 96 ~l~~~~~~--~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~~~--~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~ 171 (719)
+|..+... +..||--.+..||.||...+.. ..+...+.... .+++. + ..||+- .
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF----le~~q~~~~~g~~n~~ns-e-------t~~~~~----------~ 568 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF----LELTQELRQAGMLNDPNS-E-------TAPEQN----------Y 568 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHHHHH----HHHHHHHHhcccccCccc-c-------cccccc----------c
Confidence 88876543 3567777777888888764321 11111111100 01100 0 122221 2
Q ss_pred hHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHH-cccccccCcchhcccchHHHHHHhc
Q 005008 172 SAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR-AGCFTEISQGSLAAHPLLNFVFNSL 250 (719)
Q Consensus 172 ~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~-~~~~~~~~~~~~~~~~ll~~~~~~l 250 (719)
+..++++++.+ ++++.- .+.. +..-++...++.+.--.. || . .-.+.-++..+...|
T Consensus 569 ~~~~~~L~~~V----~~~v~s---Llsd--------~~~~Vkr~Lle~i~~LC~FFG------k-~ksND~iLshLiTfL 626 (1431)
T KOG1240|consen 569 NTELQALHHTV----EQMVSS---LLSD--------SPPIVKRALLESIIPLCVFFG------K-EKSNDVILSHLITFL 626 (1431)
T ss_pred chHHHHHHHHH----HHHHHH---HHcC--------CchHHHHHHHHHHHHHHHHhh------h-cccccchHHHHHHHh
Confidence 23344444333 222221 1221 112344444544332211 11 1 113456788888888
Q ss_pred CCC--ChHHHHHHHHHHHhh--cCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhH
Q 005008 251 QVQ--SSFDVAIEVLVELVG--RHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEA 326 (719)
Q Consensus 251 ~~~--~~~~~a~~~l~eil~--~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~ 326 (719)
++. .++.+-.|.+.-+-- ..+..-+.++|-+ + .++.+.++-++...-.-+..+.+... + + -..+
T Consensus 627 NDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl-------~-Q~ltD~EE~Viv~aL~~ls~Lik~~l--l-~-K~~v 694 (1431)
T KOG1240|consen 627 NDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL-------Q-QGLTDGEEAVIVSALGSLSILIKLGL--L-R-KPAV 694 (1431)
T ss_pred cCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHH-------H-HhccCcchhhHHHHHHHHHHHHHhcc--c-c-hHHH
Confidence 864 355554444432110 1122334444421 1 24545444333322233333322210 0 0 1256
Q ss_pred HHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHH
Q 005008 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDAL 390 (719)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l 390 (719)
.++++..+-+..|| +.=|...++.|.+...+.+...|.+ -...+..+|++.+.+-.+
T Consensus 695 ~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~~~~ls~advy-----c~l~P~irpfl~~~v~~i 751 (1431)
T KOG1240|consen 695 KDILQDVLPLLCHP--NLWIRRAVLGIIAAIARQLSAADVY-----CKLMPLIRPFLERPVIQI 751 (1431)
T ss_pred HHHHHhhhhheeCc--hHHHHHHHHHHHHHHHhhhhhhhhe-----EEeehhhHHhhhccHhhh
Confidence 78889999999999 4458888888888777665333221 134466777777665433
No 86
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=33.31 E-value=2.1e+02 Score=23.94 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-h---------HHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHH
Q 005008 18 HDTESCNRVAANQWLVQFQQT-D---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~s-~---------~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~ 87 (719)
.++++..|..|-..|..+-.. + +++.....+|..+ +..++..++.+|.+-..... +....
T Consensus 17 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~~~v~~~a~~~L~~l~~~~~----~~~~~ 86 (120)
T cd00020 17 SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE------DEEVVKAALWALRNLAAGPE----DNKLI 86 (120)
T ss_pred HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC------CHHHHHHHHHHHHHHccCcH----HHHHH
Confidence 355666777777777766543 2 4566666677653 34888888888887654321 11112
Q ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 005008 88 ALLNALLVAAKRFS-SGPPQLLTQICLALSAL 118 (719)
Q Consensus 88 ~Lr~~Ll~~l~~~~-~~~~~v~~kL~~ala~l 118 (719)
..+..++..+.+.- .+...++...+.+|..+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22222344333322 23456777776666654
No 87
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=33.15 E-value=4.2e+02 Score=26.73 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCc
Q 005008 525 TNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (719)
Q Consensus 525 ~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~ 604 (719)
+-...+++|+.+.+.|......|..++..+. .++..- ......++..+.+...-......+|..+++-+-.+++.-
T Consensus 38 ~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~-- 113 (262)
T PF14500_consen 38 QEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFS-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH-- 113 (262)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCC-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--
Confidence 3456777888888888766666688888887 344321 111223333333322223445667888888888887663
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 005008 605 KELKNNLLARLLSSSYEAIGKLIDGDNN 632 (719)
Q Consensus 605 ~~~~~~~l~~l~~p~~~~l~~~~~~~~~ 632 (719)
...+..+-+.++..+-+++++..+
T Consensus 114 ----~~~l~~~~~~fv~~~i~~~~gEkD 137 (262)
T PF14500_consen 114 ----REALQSMGDDFVYGFIQLIDGEKD 137 (262)
T ss_pred ----HHHHHhchhHHHHHHHHHhccCCC
Confidence 233455556666666666666543
No 88
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=32.35 E-value=4.8e+02 Score=25.40 Aligned_cols=48 Identities=25% Similarity=0.191 Sum_probs=32.4
Q ss_pred hHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 005008 567 NLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLL 616 (719)
Q Consensus 567 ~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~ 616 (719)
+.+.|+.-| .....+.++.+.+..+..|+=.|++.++..+. ..+...+
T Consensus 152 h~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~--~~l~a~L 200 (223)
T PF10441_consen 152 HAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHEL--QQLNASL 200 (223)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHc
Confidence 444444333 33346678999999999999999999987763 4444433
No 89
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=32.19 E-value=3.4e+02 Score=27.80 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCh---HHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCC
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD---AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~---~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~ 82 (719)
.+.|.++++.+-.-...........+|...-++. ..|.+...|+..--. .+--.||- ..-..++. ......
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~----~v~~e~~~-~~p~~~~~-~~~~~~ 75 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLE----KVIDEFFE-SAPEESGP-QNPNVE 75 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH----HHHHHHHh-cCccccCC-CCCCcc
Confidence 3567888888765444456678888988887764 368877777743210 11112220 00001111 122344
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 005008 83 SAAKDALLNALLVAAKRFSSGPPQLLTQICLALSA 117 (719)
Q Consensus 83 ~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~ 117 (719)
...+..++..++.++..|.. +++.+.+||..|..
T Consensus 76 ~~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~ 109 (288)
T PF09184_consen 76 PEDYEEMKERILELLDSFDE-PPFTIQRLCELLLD 109 (288)
T ss_pred hhhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhC
Confidence 56788899999999988865 89999999987643
No 90
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=31.10 E-value=2.1e+02 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.7
Q ss_pred HhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCC
Q 005008 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDE 564 (719)
Q Consensus 521 ~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~ 564 (719)
.++...|.++|.|+.+.+.+|+.......+...+.+-+...+..
T Consensus 70 ~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~~ 113 (148)
T PF09384_consen 70 GRDEESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIGQ 113 (148)
T ss_pred hCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 34577899999999999999998777777777777767666643
No 91
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=29.33 E-value=2.2e+02 Score=28.53 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHH
Q 005008 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFL 534 (719)
Q Consensus 455 ~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l 534 (719)
-+.+.++|.++.++. + ..|..++.++..... +.+..+..++|++- +|.-++..-..+
T Consensus 171 ~~Ry~amF~LRn~g~------E----eaI~al~~~l~~~Sa--------lfrhEvAfVfGQl~-----s~~ai~~L~k~L 227 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT------E----EAINALIDGLADDSA--------LFRHEVAFVFGQLQ-----SPAAIPSLIKVL 227 (289)
T ss_pred HHHHhhhhHhhccCc------H----HHHHHHHHhcccchH--------HHHHHHHHHHhhcc-----chhhhHHHHHHH
Confidence 345578898887753 1 334555555544322 33344568888774 466566655555
Q ss_pred HHhcCcCchHHHHHHHHHHHH-HHhhccc
Q 005008 535 AAGISEAVSSNACASALRKIC-EDASALI 562 (719)
Q Consensus 535 ~~~l~~~~v~~~Aa~al~~lc-~~c~~~l 562 (719)
...-.+|-|+.-||.||..+. ++|...|
T Consensus 228 ~d~~E~pMVRhEaAeALGaIa~e~~~~vL 256 (289)
T KOG0567|consen 228 LDETEHPMVRHEAAEALGAIADEDCVEVL 256 (289)
T ss_pred HhhhcchHHHHHHHHHHHhhcCHHHHHHH
Confidence 565566889999999999998 4566544
No 92
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=29.24 E-value=3.6e+02 Score=22.94 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhhccccccccccCCChHHHHHHHHHH---H--------hchhHHHHHHHHHhhcccCCCCCcchhhhHHH
Q 005008 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL---L--------SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRK 215 (719)
Q Consensus 147 ~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l---~--------~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~ 215 (719)
+-+|.+++.+.+.+.|.+.. .+-.+|.+....+ . ...|+++..|...+.. ++++..
T Consensus 7 ~~~LGil~~f~~~l~d~~g~---~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~----------~eL~~~ 73 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGK---KPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI----------PELRSL 73 (107)
T ss_pred HHHHHHHHHHHHHHcCcccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------hhHHHH
Confidence 34666777777777654311 1222222222211 1 1235555555555532 458888
Q ss_pred HHHHHHHHHHc
Q 005008 216 ILRCLLSWVRA 226 (719)
Q Consensus 216 ~l~c~~sWi~~ 226 (719)
+++|+...+..
T Consensus 74 al~~W~~~i~~ 84 (107)
T smart00802 74 ALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHh
Confidence 88887777774
No 93
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=28.91 E-value=1.3e+02 Score=35.43 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=58.8
Q ss_pred hCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHH--HHH------HHHHHHHh--cCCChhhHHHH
Q 005008 522 AFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLE--ILM------WIGEALEK--RHLPLEDEEEV 591 (719)
Q Consensus 522 ~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~--~l~------~~~~~l~~--~~l~~~~~~~l 591 (719)
.||+-.+-+. -++..+.+|++..+|+++|.-+..||...+.-..+.. +|. ++...+.+ ...+...+...
T Consensus 809 ~~~~s~~ia~-klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~y 887 (1030)
T KOG1967|consen 809 NHPESSEIAE-KLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNY 887 (1030)
T ss_pred CCcccchHHH-HHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHH
Confidence 3565544444 3557778899999999999999888765442111111 121 11222211 12355678999
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 005008 592 VGAISLILGSVSNKELKNNLLARLLSSSY 620 (719)
Q Consensus 592 ~eai~~vi~~~p~~~~~~~~l~~l~~p~~ 620 (719)
.+++++|+..+|.+-. .+-+..++.-++
T Consensus 888 l~~LshVl~~vP~~vl-lp~~~~LlPLLL 915 (1030)
T KOG1967|consen 888 LEALSHVLTNVPKQVL-LPQFPMLLPLLL 915 (1030)
T ss_pred HHHHHHHHhcCCHHhh-ccchhhHHHHHH
Confidence 9999999999998644 333444444433
No 94
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=27.23 E-value=4.8e+02 Score=28.27 Aligned_cols=127 Identities=13% Similarity=0.228 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCC---hHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHch
Q 005008 213 NRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLL 289 (719)
Q Consensus 213 ~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~---~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~ 289 (719)
...+|+.+.+-+.- + ..|.......-+...++.....+. -+..-..|+...+.+.+.+...++.+++..-+.
T Consensus 192 I~elLeil~sii~g--f-~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~-- 266 (409)
T PF01603_consen 192 IAELLEILGSIING--F-AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPK-- 266 (409)
T ss_dssp HHHHHHHHHHHHTT-----SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-S--
T ss_pred HHHHHHHHHHHHhc--c-CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCC--
Confidence 45677777777751 1 233322111112233333333332 245667788888887776666555555432221
Q ss_pred hhhhhcCchh--HHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHH
Q 005008 290 LPALTDGDEK--VIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWST 356 (719)
Q Consensus 290 ~~a~~~~d~e--~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~ 356 (719)
.+...+ +...+..++..+...-.. .-...++..+-.|.+-+ +..|++.++.||..
T Consensus 267 ----t~s~Kev~FL~el~~il~~~~~~~f~------~i~~~lf~~la~ci~S~--h~qVAErAl~~w~n 323 (409)
T PF01603_consen 267 ----TNSQKEVLFLNELEEILEVLPPEEFQ------KIMVPLFKRLAKCISSP--HFQVAERALYFWNN 323 (409)
T ss_dssp ----S-HHHHHHHHHHHHHHHTT--HHHHH------HHHHHHHHHHHHHHTSS--SHHHHHHHHGGGGS
T ss_pred ----CCchhHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHCC
Confidence 111111 111111111111100000 12346777788887775 68999999999986
No 95
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=27.08 E-value=2.3e+02 Score=23.78 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 005008 526 NARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGE 576 (719)
Q Consensus 526 ~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~ 576 (719)
+.+.++-|+..+|.| |+++.-|-.-+.-+-+.|+..+...++...|.....
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ 60 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLD 60 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHH
Confidence 566778888899987 789999988888888989887432233344444443
No 96
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=27.06 E-value=1.3e+03 Score=28.71 Aligned_cols=142 Identities=12% Similarity=0.107 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhhc--cCCC-hHHHHHHHhhhccCCCchhHHHHHHHhhhhhc
Q 005008 84 AAKDALLNALLVAAKRFSSGP-PQLLTQICLALSALILRAV--EHGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (719)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~-~~v~~kL~~ala~l~~~~~--~W~~-~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE 159 (719)
.....|...+=++...+..++ +.|++-|-..++.|-.-+. .-.+ .+.+++..++..
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk-------------------- 629 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK-------------------- 629 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc--------------------
Confidence 345666666655555555555 4788888888776654433 1112 233334333321
Q ss_pred cccccccccCCChHHHHHHHHHHHh---------chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccccc
Q 005008 160 VIDSQASDCNISSAHRSQYGQELLS---------HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (719)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~---------~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~ 230 (719)
+..-|..+.+.+.. ..+.++-++.+.++.. .+.+...||+|+..-++.|-
T Consensus 630 -----------Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~--------EE~Viv~aL~~ls~Lik~~l-- 688 (1431)
T KOG1240|consen 630 -----------DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDG--------EEAVIVSALGSLSILIKLGL-- 688 (1431)
T ss_pred -----------cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCc--------chhhHHHHHHHHHHHHHhcc--
Confidence 22334444444431 1344566677766642 25688899999999999762
Q ss_pred ccCcchhcccchHHHHHHhcCCCC--hHHHHHHHHHHHhhc
Q 005008 231 EISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGR 269 (719)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~l~~~~--~~~~a~~~l~eil~~ 269 (719)
+.. .....+++.++-.|-.|. ++.+++..+.++..+
T Consensus 689 -l~K--~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 -LRK--PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred -cch--HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 211 122345555555555565 466777777776654
No 97
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.96 E-value=4.1e+02 Score=25.07 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=46.6
Q ss_pred cCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhc-CCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHH
Q 005008 232 ISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGR-HEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (719)
Q Consensus 232 ~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~-~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~ 308 (719)
.+++.+..+++++.+|+.|..- .-.-.|...+.+++.. .. +.+++-+-++...+- .|+.+.|.++.....+++
T Consensus 29 ~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~---~kilPvlPqLI~plk-~AL~tr~~~V~~~~L~~L 104 (183)
T PF10274_consen 29 VDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGG---EKILPVLPQLIIPLK-RALNTRDPEVFCATLKAL 104 (183)
T ss_pred cChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence 4566677789999999998742 2344677888888877 32 233333333333332 377788887765555554
Q ss_pred HHH
Q 005008 309 SEI 311 (719)
Q Consensus 309 ~~~ 311 (719)
..+
T Consensus 105 q~L 107 (183)
T PF10274_consen 105 QQL 107 (183)
T ss_pred HHH
Confidence 444
No 98
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.30 E-value=8.1e+02 Score=25.70 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHHhcC---------hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHH
Q 005008 19 DTESCNRVAANQWLVQFQQT---------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL 89 (719)
Q Consensus 19 ~~~~~~~~~A~~~L~~fq~s---------~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~L 89 (719)
..+.+.+..|-.-|+.+-.+ -.+|..+...|.+.+ .++|-.||.++-+-+++. |..+-..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~------~~lR~~Aa~Vigt~~qNN----P~~Qe~v~ 163 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSD------AELRELAARVIGTAVQNN----PKSQEQVI 163 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCc------HHHHHHHHHHHHHHHhcC----HHHHHHHH
Confidence 44667777777777665432 346888888776654 599999999999988863 33222222
Q ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc
Q 005008 90 ----LNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (719)
Q Consensus 90 ----r~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~ 123 (719)
...|+..+. ..++-.+++|.--|++.+.....
T Consensus 164 E~~~L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 164 ELGALSKLLKILS--SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HcccHHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc
Confidence 333444443 24667799999889988887643
No 99
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=25.13 E-value=3.7e+02 Score=26.24 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHhhcCCC-h----hHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHH
Q 005008 254 SSFDVAIEVLVELVGRHEG-L----PQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALA 328 (719)
Q Consensus 254 ~~~~~a~~~l~eil~~~~~-~----~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ 328 (719)
..+..+++++..++.+.+. + ++.+++-+..+..............+....+|+++..+.-.|...+......+..
T Consensus 3 ~~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~ 82 (223)
T PF10441_consen 3 KSILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLS 82 (223)
T ss_pred hHHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHH
Confidence 3455677888888877642 2 2333332222221110001123345678889999999988888888766556778
Q ss_pred HHHHHHhhccCCC
Q 005008 329 LADALLSCVAFPS 341 (719)
Q Consensus 329 ll~~ll~~~~~p~ 341 (719)
.++.||.+...|+
T Consensus 83 ~l~~LL~~l~~~~ 95 (223)
T PF10441_consen 83 VLQRLLRCLFSPN 95 (223)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888877654
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.59 E-value=9.2e+02 Score=26.10 Aligned_cols=349 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCh-----HHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchH
Q 005008 243 LNFVFNSLQVQSS-----FDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPS 317 (719)
Q Consensus 243 l~~~~~~l~~~~~-----~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~ 317 (719)
++.++..|.+.+. +..+.+++.++-..+. +.+.+.++++...... ...+.+.+.+..++..+..+.+....
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~---~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIV---CQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHHHHhccc
Q ss_pred HH-HhCChhHHH--HHHHHHhhccCCCCCchhh--hhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHH
Q 005008 318 LI-VEASPEALA--LADALLSCVAFPSEDWEIA--DSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLL 392 (719)
Q Consensus 318 ~l-~~~~~~~~~--ll~~ll~~~~~p~~d~~v~--~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~ 392 (719)
.. ..+...... ++..++...-... +.+-. ...++--..+...+. +.-..+.-..+..++....+
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~-~~~~~~~~~~L~~~~~l~~~iv---------~~l~~~~q~~~~~~~~~lf~- 145 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQAS-DQSSDLDDRVLELLSRLINLIV---------RSLSPEKQQEILDELYSLFL- 145 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhc-ccccccchHHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHHc-
Q ss_pred HhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch---HHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhh
Q 005008 393 RAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSE 469 (719)
Q Consensus 393 k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~---~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e 469 (719)
.+........+.......-++.+. ++..+..-++.+ .....+++.+........++...-+++-+++++.-
T Consensus 146 -----~~~~~~~~~~~~~~~~~~~~~~~~-l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 146 -----SPKSFSPFQPSSSTISEQQSRLVI-LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVN 219 (415)
T ss_pred -----cccccCCCCccccccccccccHHH-HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHc
Q ss_pred hcccCCcccchhHHHHHHHHhc--cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcCchHHHH
Q 005008 470 VVLQEGQAFDFSVIMQLVAVLS--ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNAC 547 (719)
Q Consensus 470 ~~~~~~~~~~l~~i~~ll~~l~--~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~~A 547 (719)
-.+.++. +..++..+..-. ..+.. .+..++.-.+--.-..+.++...-...++.++..+.++++...|
T Consensus 220 K~~~~~~---l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~a 289 (415)
T PF12460_consen 220 KWPDDDD---LDEFLDSLLQSISSSEDSE-------LRPQALEILIWITKALVMRGHPLATELLDKLLELLSSPELGQQA 289 (415)
T ss_pred CCCChhh---HHHHHHHHHhhhcccCCcc-------hhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHH
Q ss_pred HHHHHHHHHHhhcccCCCchHHH--------HHHHHHHHH--hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 005008 548 ASALRKICEDASALIDEPSNLEI--------LMWIGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (719)
Q Consensus 548 a~al~~lc~~c~~~l~~p~~~~~--------l~~~~~~l~--~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~ 617 (719)
|++|.-+..+....+....+... +..+...+. ....+.+.+...+.|++.++..+|..-. ...+..++.
T Consensus 290 A~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl-~~~l~~LlP 368 (415)
T PF12460_consen 290 AKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVL-LPELPTLLP 368 (415)
T ss_pred HHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHH-HHHHHHHHH
Q ss_pred HHHHHH
Q 005008 618 SSYEAI 623 (719)
Q Consensus 618 p~~~~l 623 (719)
-+++.|
T Consensus 369 LLlqsL 374 (415)
T PF12460_consen 369 LLLQSL 374 (415)
T ss_pred HHHHHh
No 101
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=23.71 E-value=1.1e+03 Score=26.67 Aligned_cols=171 Identities=16% Similarity=0.127 Sum_probs=97.0
Q ss_pred HHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHH--hhhhcccCCcccchhHHHHHHHHhc
Q 005008 414 VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNV--VSEVVLQEGQAFDFSVIMQLVAVLS 491 (719)
Q Consensus 414 ~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~--i~e~~~~~~~~~~l~~i~~ll~~l~ 491 (719)
.+-|+....++...+.++..+. |+..+..+..+- + .+=...+.|+..+++ +...+.+ +. +..|+.++.+-.
T Consensus 309 ~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l-~-dp~~~~~e~~~~L~~ttFV~~V~~---ps-LalmvpiL~R~l 381 (569)
T KOG1242|consen 309 PEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDAL-A-DPSCYTPECLDSLGATTFVAEVDA---PS-LALMVPILKRGL 381 (569)
T ss_pred HHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHh-c-CcccchHHHHHhhcceeeeeeecc---hh-HHHHHHHHHHHH
Confidence 4457777788888888887664 444444333211 1 122356778888875 3333432 11 566776664433
Q ss_pred -cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhc----Cc--CchHHHHHHHHHHHHHHhhcccCC
Q 005008 492 -ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI----SE--AVSSNACASALRKICEDASALIDE 564 (719)
Q Consensus 492 -~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l----~~--~~v~~~Aa~al~~lc~~c~~~l~~ 564 (719)
.-... ..+.| ...++..+.... +|.-+.+-++-|+.++ .+ |+++.-|++|+..+-++-+..--
T Consensus 382 ~eRst~-------~kr~t-~~IidNm~~Lve-Dp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f- 451 (569)
T KOG1242|consen 382 AERSTS-------IKRKT-AIIIDNMCKLVE-DPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF- 451 (569)
T ss_pred hhccch-------hhhhH-HHHHHHHHHhhc-CHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-
Confidence 22221 23344 478888887553 4555555555555444 33 78999999999888777665421
Q ss_pred CchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 005008 565 PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (719)
Q Consensus 565 p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (719)
+...+-+.... ......-++....++++.++..+..+
T Consensus 452 ~d~~p~l~e~~----~~~k~~~~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 452 DDLIPELSETL----TSEKSLVDRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred cccccHHHHhh----ccchhhhhhHHHhhhHHHHHhcccch
Confidence 22223233222 11223345777778888888776554
No 102
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.07 E-value=6.2e+02 Score=22.81 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=28.5
Q ss_pred hCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhccc
Q 005008 522 AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (719)
Q Consensus 522 ~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l 562 (719)
..+..-..++..|-+.+.+ |.++..|-..+..+.+.|+..+
T Consensus 30 ~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 30 SDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 3344445666666666665 5688888888888889998754
No 103
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=20.52 E-value=3.4e+02 Score=19.67 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 005008 85 AKDALLNALLVAAKRFSS-GPPQLLTQICLALSAL 118 (719)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~-~~~~v~~kL~~ala~l 118 (719)
+....-+.|.+.|..+.. -++.+|.++|.+|..+
T Consensus 12 ~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 12 ETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 334445556666665433 3577888888887654
No 104
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.37 E-value=6.3e+02 Score=23.87 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHH-hhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 005008 527 ARPLLLFLAAGISEAV--SSNACASALRKICED-ASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (719)
Q Consensus 527 L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~-c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (719)
..+.|+.++.|++..+ .+--|-.++..+.+. .+..+. | .++.|. -+..+|. .-+.+.....++++-.++...
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-P-vlPqLI~plk~AL~--tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-P-VLPQLIIPLKRALN--TRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-H-HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhh
Confidence 3578888999998633 566777788888877 444443 2 555544 3334443 235666777777777774332
Q ss_pred Cc-hHHHHHHHHHHHHH
Q 005008 603 SN-KELKNNLLARLLSS 618 (719)
Q Consensus 603 p~-~~~~~~~l~~l~~p 618 (719)
+. -++...++.+++.+
T Consensus 112 ~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPV 128 (183)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 21 11224556555544
Done!