Query 005008
Match_columns 719
No_of_seqs 186 out of 1010
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:35:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 1.6E-73 5.3E-78 675.8 61.8 653 6-718 5-733 (980)
2 4hat_C Exportin-1; heat repeat 100.0 1.8E-70 6.2E-75 649.3 51.5 630 6-694 15-699 (1023)
3 3gjx_A Exportin-1; transport, 100.0 3.1E-70 1.1E-74 642.5 45.5 660 6-714 27-757 (1073)
4 2x19_B Importin-13; nuclear tr 100.0 5.2E-65 1.8E-69 614.4 63.9 664 5-718 22-717 (963)
5 2x1g_F Cadmus; transport prote 100.0 2.6E-66 9E-71 625.5 51.0 669 6-718 6-725 (971)
6 3m1i_C Exportin-1; heat repeat 100.0 1E-55 3.6E-60 535.2 54.2 659 6-706 15-748 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 1.3E-53 4.3E-58 518.6 55.4 659 6-707 10-796 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 3.5E-32 1.2E-36 326.6 53.2 607 3-711 1-670 (960)
9 4fdd_A Transportin-1; heat rep 100.0 2.5E-31 8.4E-36 316.1 49.1 517 4-628 10-540 (852)
10 2bpt_A Importin beta-1 subunit 100.0 2E-27 7E-32 283.1 49.9 522 3-627 1-554 (861)
11 1qgr_A Protein (importin beta 100.0 1.5E-24 5E-29 258.9 48.5 514 9-628 3-563 (876)
12 1ibr_B P95, importin beta-1 su 99.9 1.7E-23 5.9E-28 230.5 32.2 431 9-539 3-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.5 1.5E-10 5.1E-15 142.8 39.9 590 6-718 5-682 (1230)
14 1u6g_C TIP120 protein, CAND1; 99.2 2.7E-08 9.3E-13 122.6 40.3 552 59-718 19-601 (1230)
15 1b3u_A Protein (protein phosph 99.0 3.2E-06 1.1E-10 95.2 41.6 508 5-605 8-553 (588)
16 1b3u_A Protein (protein phosph 99.0 2.3E-07 8E-12 104.6 31.7 479 9-599 88-586 (588)
17 4fdd_A Transportin-1; heat rep 99.0 1.6E-05 5.3E-10 94.0 45.9 511 9-605 216-789 (852)
18 1qgr_A Protein (importin beta 98.9 7.4E-05 2.5E-09 88.4 51.2 632 21-718 143-830 (876)
19 2bpt_A Importin beta-1 subunit 98.9 0.0001 3.4E-09 87.1 49.8 388 186-628 367-788 (861)
20 1ibr_B P95, importin beta-1 su 98.0 0.0096 3.3E-07 64.1 32.6 111 451-572 339-453 (462)
21 2vgl_B AP-2 complex subunit be 97.9 0.015 5.1E-07 65.2 33.1 460 16-598 57-530 (591)
22 2qk1_A Protein STU2; STU2P, XM 97.9 0.00057 1.9E-08 67.4 17.9 166 451-629 27-202 (249)
23 2qk2_A LP04448P; mini spindles 97.6 0.0013 4.3E-08 64.6 16.3 156 451-623 26-185 (242)
24 1w63_A Adapter-related protein 97.3 0.35 1.2E-05 54.2 35.7 431 59-600 120-577 (618)
25 2jdq_A Importin alpha-1 subuni 97.1 0.014 4.7E-07 62.7 18.4 335 210-601 34-391 (450)
26 4b8j_A Importin subunit alpha- 96.9 0.16 5.5E-06 55.7 25.2 306 243-605 76-405 (528)
27 1wa5_B Importin alpha subunit; 96.7 0.06 2E-06 59.3 19.6 334 210-603 101-460 (530)
28 4b8j_A Importin subunit alpha- 96.5 0.25 8.5E-06 54.2 22.2 333 210-603 88-446 (528)
29 2z6g_A B-catenin; FULL-length, 96.5 1.9 6.6E-05 49.6 32.8 288 8-352 116-421 (780)
30 3tpo_A Importin subunit alpha- 96.3 0.26 8.8E-06 54.2 20.9 334 210-601 90-450 (529)
31 1wa5_B Importin alpha subunit; 96.1 0.19 6.5E-06 55.2 18.6 355 125-560 85-461 (530)
32 3ul1_B Importin subunit alpha- 95.8 0.16 5.4E-06 55.6 16.5 329 210-601 71-431 (510)
33 2qk1_A Protein STU2; STU2P, XM 95.5 0.17 5.9E-06 49.4 13.6 150 453-615 74-234 (249)
34 2jdq_A Importin alpha-1 subuni 95.3 3.5 0.00012 43.5 26.0 297 12-359 69-390 (450)
35 2vgl_B AP-2 complex subunit be 95.0 5.7 0.00019 44.0 33.9 356 187-605 120-498 (591)
36 2qk2_A LP04448P; mini spindles 94.6 0.61 2.1E-05 45.0 14.6 147 452-615 69-219 (242)
37 2x1g_F Cadmus; transport prote 94.3 11 0.00039 44.4 28.4 357 212-627 480-885 (971)
38 2z6g_A B-catenin; FULL-length, 93.0 16 0.00055 41.9 31.8 248 18-314 160-429 (780)
39 4hxt_A De novo protein OR329; 92.9 6.6 0.00023 37.3 19.8 220 9-270 4-243 (252)
40 1oyz_A Hypothetical protein YI 92.6 8.2 0.00028 37.7 21.1 211 9-266 25-248 (280)
41 1w9c_A CRM1 protein, exportin 92.4 5.2 0.00018 39.9 16.8 168 211-394 44-224 (321)
42 4db8_A Armadillo-repeat protei 91.2 3.8 0.00013 39.2 14.7 227 39-309 11-247 (252)
43 4db6_A Armadillo repeat protei 90.7 0.57 1.9E-05 43.9 7.8 140 451-602 23-169 (210)
44 2x19_B Importin-13; nuclear tr 90.6 31 0.0011 40.4 35.6 161 454-628 699-874 (963)
45 2vgl_A Adaptor protein complex 89.7 28 0.00096 38.6 35.5 85 504-595 496-584 (621)
46 1wa5_C Importin alpha RE-expor 89.0 41 0.0014 39.4 42.7 160 454-629 375-559 (960)
47 1xqr_A HSPBP1 protein; armadil 88.8 2 6.9E-05 42.9 10.3 139 452-602 94-240 (296)
48 4db6_A Armadillo repeat protei 88.4 9.1 0.00031 35.3 14.4 189 38-267 10-208 (210)
49 4hxt_A De novo protein OR329; 88.1 18 0.0006 34.2 18.7 224 45-313 7-241 (252)
50 1w63_A Adapter-related protein 87.4 39 0.0013 37.3 33.5 104 18-137 117-229 (618)
51 4hat_C Exportin-1; heat repeat 87.0 7.2 0.00025 46.2 15.2 170 211-394 726-908 (1023)
52 2of3_A ZYG-9; multifunctional 86.8 17 0.00058 35.3 15.2 135 343-520 100-238 (266)
53 2iw3_A Elongation factor 3A; a 86.5 11 0.00036 44.1 15.8 189 378-599 88-323 (986)
54 3ul1_B Importin subunit alpha- 86.5 38 0.0013 36.3 24.5 290 9-351 59-379 (510)
55 4db8_A Armadillo-repeat protei 86.5 3.5 0.00012 39.5 10.5 138 452-601 66-210 (252)
56 3gjx_A Exportin-1; transport, 85.9 63 0.0022 38.2 26.1 168 211-394 752-932 (1073)
57 2iw3_A Elongation factor 3A; a 84.1 9.5 0.00033 44.5 13.9 209 454-716 109-325 (986)
58 1xqr_A HSPBP1 protein; armadil 84.1 32 0.0011 34.0 16.3 91 510-604 61-158 (296)
59 1oyz_A Hypothetical protein YI 83.4 34 0.0011 33.1 16.5 145 416-598 39-186 (280)
60 3ltj_A Alpharep-4; protein eng 79.1 37 0.0013 30.7 15.7 134 416-598 30-165 (201)
61 3ltm_A Alpha-REP4; protein eng 78.0 41 0.0014 30.7 15.7 135 415-598 34-170 (211)
62 3now_A UNC-45 protein, SD10334 77.1 1.1E+02 0.0037 35.0 32.8 446 59-601 217-738 (810)
63 3ibv_A Exportin-T; karyopherin 75.4 1.3E+02 0.0045 35.2 26.0 84 540-631 714-797 (980)
64 1jdh_A Beta-catenin; beta-cate 74.9 91 0.0031 33.1 30.8 257 41-353 18-289 (529)
65 2z6h_A Catenin beta-1, beta-ca 74.7 1.1E+02 0.0037 33.8 36.0 260 39-353 13-286 (644)
66 3tpo_A Importin subunit alpha- 72.9 1.1E+02 0.0036 32.9 26.1 293 9-351 78-398 (529)
67 2db0_A 253AA long hypothetical 72.6 21 0.00072 32.4 9.2 125 454-601 121-247 (253)
68 3m1i_C Exportin-1; heat repeat 68.4 34 0.0012 40.7 13.2 94 295-395 815-909 (1049)
69 3ltm_A Alpha-REP4; protein eng 68.0 71 0.0024 29.0 19.5 177 9-223 21-201 (211)
70 1te4_A Conserved protein MTH18 59.3 15 0.00052 30.9 5.9 75 452-553 54-130 (131)
71 3u0r_A Apoptosis inhibitor 5; 53.8 93 0.0032 32.8 11.4 45 510-557 49-95 (507)
72 2vgl_A Adaptor protein complex 52.8 2.6E+02 0.009 30.6 37.3 109 18-137 121-234 (621)
73 1jdh_A Beta-catenin; beta-cate 46.4 2.8E+02 0.0096 29.1 23.4 250 15-313 24-295 (529)
74 4ffb_C Protein STU2; tubulin f 44.6 1.3E+02 0.0046 28.8 10.9 138 450-602 19-170 (278)
75 2of3_A ZYG-9; multifunctional 43.3 2.3E+02 0.0079 27.2 20.0 167 60-270 60-238 (266)
76 3ltj_A Alpharep-4; protein eng 40.6 2E+02 0.0067 25.6 19.8 175 9-221 16-194 (201)
77 3nmw_A APC variant protein; AR 39.4 96 0.0033 31.4 9.0 145 452-605 183-339 (354)
78 3now_A UNC-45 protein, SD10334 39.1 4.8E+02 0.016 29.6 25.3 331 243-601 54-409 (810)
79 3nmw_A APC variant protein; AR 34.0 1E+02 0.0035 31.1 8.2 137 454-600 46-200 (354)
80 2z6h_A Catenin beta-1, beta-ca 32.1 5.3E+02 0.018 28.1 28.0 218 9-270 58-294 (644)
81 3l6x_A Catenin delta-1; cateni 30.4 2.7E+02 0.0094 30.2 11.2 87 529-622 90-182 (584)
82 3nmz_A APC variant protein; pr 29.6 1.4E+02 0.0047 31.5 8.5 143 452-603 299-453 (458)
83 3a6p_A Exportin-5; exportin-5, 27.3 5.1E+02 0.018 31.0 14.0 53 504-557 223-277 (1204)
84 3l6x_A Catenin delta-1; cateni 24.4 4.2E+02 0.015 28.7 11.4 71 526-601 45-120 (584)
85 1te4_A Conserved protein MTH18 23.9 1.6E+02 0.0054 24.3 6.5 51 15-72 49-99 (131)
86 1xm9_A Plakophilin 1; armadill 23.6 2E+02 0.0068 30.0 8.6 104 510-623 23-136 (457)
87 3oc3_A Helicase MOT1, MOT1; re 22.5 4.4E+02 0.015 28.6 10.3 84 454-555 242-327 (800)
88 3tjz_B Coatomer subunit gamma; 22.4 3E+02 0.01 27.7 9.1 67 480-556 137-205 (355)
89 3tjz_B Coatomer subunit gamma; 22.0 94 0.0032 31.5 5.2 92 452-561 80-173 (355)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.6e-73 Score=675.77 Aligned_cols=653 Identities=14% Similarity=0.156 Sum_probs=503.9
Q ss_pred HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008 6 QIKVAQAVHV-LNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (719)
Q Consensus 6 ~~~v~~av~~-ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~ 84 (719)
.++|.+||.. ++.++|++.|++|++||++||++|+||++|..+|..+.. .+.++|||||+||++||+ .+|++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~---~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTK---YKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTT---SCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHHH----hCChh
Confidence 5679999965 444558999999999999999999999999999987532 257999999999999999 79999
Q ss_pred ----hHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCC-chhHHHHHHHhh
Q 005008 85 ----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQD-NGNMAVLEMLTV 155 (719)
Q Consensus 85 ----~~~~Lr~~Ll~~l~~~~--~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~-~~~~~~L~~L~~ 155 (719)
++..||+.|++++.+.. .++++|+||||.+++.++.+.+ .||++++++++.++++ ++ .....+|++|..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQSEFSNFYLKVLLS 155 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence 99999999999998854 4678999999999999999975 6999999999999764 22 245667777777
Q ss_pred hhhccccccccccCCCh---HHHHHHHHHHHhc-----hhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcc
Q 005008 156 LPEEVIDSQASDCNISS---AHRSQYGQELLSH-----TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAG 227 (719)
Q Consensus 156 l~EE~~~~~~~~~~l~~---~~r~~~~~~l~~~-----~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~ 227 (719)
|+||+.+.+ +. .+. .|++.+++.+..+ .+.++.++.++... +...+...+|+|+.+|+.|
T Consensus 156 i~EEv~~~~-~~--~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~L~~l~s~i~w- 223 (980)
T 3ibv_A 156 IGDEIADSL-VL--KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLCLQVYAQWVSW- 223 (980)
T ss_dssp HHHHHCCCC-SC--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTTT-
T ss_pred hHHHHHhcc-cc--cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHhh-
Confidence 779998653 11 232 4555667777776 55555566555432 1246789999999999997
Q ss_pred cccccCcchhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHH--HHHhhhhhHHHchhhhhh-cCchhHHhHH
Q 005008 228 CFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQA--LLCRVPFLKELLLLPALT-DGDEKVIGGL 304 (719)
Q Consensus 228 ~~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~--l~~~~~~l~~~~~~~a~~-~~d~e~~~~l 304 (719)
+|.+.+.++++++.+|+.|.+++++++|++||+++++++++..+. ++. .+.+.+.+.. ... ++|.|+.+++
T Consensus 224 ----i~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~-~l~L~~~~~~-l~~~~~D~d~~~~l 297 (980)
T 3ibv_A 224 ----ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLN-ILNLNLFFSK-SQEQSTDPNFDEHV 297 (980)
T ss_dssp ----SCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHCC------CCHHHHHHH
T ss_pred ----cCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHH-HHhHHHHHHH-HhcccccHHHHHHH
Confidence 577788889999999999999999999999999999998763221 222 2455665532 222 6888999999
Q ss_pred HHHHHHHHHhchHHHHhCC------------hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhh
Q 005008 305 ACLMSEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNK 372 (719)
Q Consensus 305 ~~l~~~~~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~ 372 (719)
|++++++|+.+... .+.+ +++..+++++|.|++|| +++|+..||+||+.+.+.+...+. .
T Consensus 298 a~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~-----~ 369 (980)
T 3ibv_A 298 AKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESS-----S 369 (980)
T ss_dssp HHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccc-----c
Confidence 99999999999998 6655 45678999999999997 679999999999998875421110 1
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHh----hcC
Q 005008 373 KHVEDMFFSVFSALLDALLLRAQVDESSFND-DGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS----WGS 447 (719)
Q Consensus 373 ~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~-~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~----~~~ 447 (719)
......++|++.+|++++++||+||++..++ ++|.||+++|.+||++++ ++.|++.++|++.++..+++.+ .+.
T Consensus 370 ~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~ 448 (980)
T 3ibv_A 370 KELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTA 448 (980)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 2345788999999999999999999885433 234577889999999999 8999999999988777444322 111
Q ss_pred --CCCCCChhHHHHHHHHHHHhhhhcccC------CcccchhHHHHHHHHhc-----cCchhhhhhHHHHHHHHHHHHHH
Q 005008 448 --ANVPIPWKEVETKLFALNVVSEVVLQE------GQAFDFSVIMQLVAVLS-----ASRSEELKGFMHIVYRSLADVIG 514 (719)
Q Consensus 448 --~~~~~~W~~~Ea~L~~l~~i~e~~~~~------~~~~~l~~i~~ll~~l~-----~~~~~~~~~~~~l~~~t~~~~ig 514 (719)
...+.+|+++||+||+++++||+++.. ++.. +|.+++++..+. +++|+ .+++++ |+++|
T Consensus 449 l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~-lp~l~~ll~~ll~s~i~~~~hp------~V~~~~-~~~l~ 520 (980)
T 3ibv_A 449 ATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKS-PTVLSQILALVTTSQVCRHPHP------LVQLLY-MEILV 520 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCC-BCHHHHHHHHHHHSSTTTCCCH------HHHHHH-HHHHH
T ss_pred hcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccch-hHHHHHHHHHHHhCCCCCCCCH------HHHHHH-HHHHH
Confidence 112356999999999999999998742 1122 678888777663 35554 266665 89999
Q ss_pred hhHHHHHhCccchHHHHHHHHH--hcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCC-------
Q 005008 515 SYSKWISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHL------- 583 (719)
Q Consensus 515 ~y~~~~~~~p~~L~~vl~~l~~--~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l------- 583 (719)
||++||..||++++++|++++. |+++| +|+.+||+||++||++|+.++. |+..+++..+...+.....
T Consensus 521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~~~~~il~~l~~lL~~~~~~~~~~~~ 599 (980)
T 3ibv_A 521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-NYTESSLAMLGDLLNISVSPVTDMDA 599 (980)
T ss_dssp HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-SSHHHHHHHTTGGGCCCCCCCCC--C
T ss_pred HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHhhcCcCCCCCcccc
Confidence 9999999999999999999999 99875 5999999999999999999985 5444444444333331111
Q ss_pred ------------ChhhHHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHH
Q 005008 584 ------------PLEDEEEVVGAISLILGSV--SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSA 649 (719)
Q Consensus 584 ------------~~~~~~~l~eai~~vi~~~--p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (719)
..+++..++||+|.+++.. |.++. ..+++.+++|++++++++++....++ + ... .+...
T Consensus 600 ~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~-~~~l~~ll~pl~~~l~~~l~~~~~~~---~--~~~-~i~~~ 672 (980)
T 3ibv_A 600 PVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQ-ALYCDSLINALIGKANAALSSDLSAL---E--NII-SVYCS 672 (980)
T ss_dssp SSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHHHHHHHTTSCC-----C--HHH-HHHHH
T ss_pred cccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhcccCc---c--HHH-HHHHH
Confidence 1347999999999999875 45554 89999999999999999998654321 1 111 22223
Q ss_pred HHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhcC
Q 005008 650 TRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (719)
Q Consensus 650 ~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~g 718 (719)
+..+..++..|+... ...+|+..+++++|+++..+++ +|+++..|.|++|++++++++++|
T Consensus 673 i~al~~lakgf~~~~-------~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg 733 (980)
T 3ibv_A 673 LMAIGNFAKGFPARG-------SEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVG 733 (980)
T ss_dssp HHHHHHHHHTSCSCC--------CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHhccCCccc-------CCCCcHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHcc
Confidence 334455556665431 2357899999999999999999 599999999999999999999987
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.8e-70 Score=649.30 Aligned_cols=630 Identities=15% Similarity=0.176 Sum_probs=491.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
.+.++++|.++|+++ ++.|++|++||++||++|++|.+|..+|..+. +.++|||||++|++||+++|+.+|+++
T Consensus 15 v~~Le~av~~ly~p~-~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~-----~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 15 IALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFST-----NPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHcCccHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 467999999999654 45999999999999999999999999997543 459999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 005008 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~ 157 (719)
+..||+.|++++.++..+ ++.|++|||.+++.++.+.+ .||++++++++.+++ ++...+.+|++|+.|+
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~ 165 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 999999999999876533 47899999999999999985 699999999999975 3456899999999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchh
Q 005008 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (719)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (719)
||+.+.... .++..||..+++.|..+++.|++++.++++... ..++...+|+|+.+|+.| +|.+.+
T Consensus 166 EEV~~~~~~--~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~W-----I~i~~i 231 (1023)
T 4hat_C 166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLHW-----IPYRYI 231 (1023)
T ss_dssp HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTTT-----SCTHHH
T ss_pred HHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHh-----CCHHHh
Confidence 999753222 267889999999999999999999999998642 246788899999999998 677778
Q ss_pred cccchHHHHH-HhcCCCChHHHHHHHHHHHhhcC--CC---hhH---HHHHhhh------------hhHHHchhhhhhcC
Q 005008 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRH--EG---LPQ---ALLCRVP------------FLKELLLLPALTDG 296 (719)
Q Consensus 238 ~~~~ll~~~~-~~l~~~~~~~~a~~~l~eil~~~--~~---~~~---~l~~~~~------------~l~~~~~~~a~~~~ 296 (719)
.++++++.+| ..|.+++++++|++||++++++. .+ +.+ .++..++ .+.+.+. ...++
T Consensus 232 ~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~~~~ 309 (1023)
T 4hat_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1023)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HTCTT
T ss_pred cchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--ccccc
Confidence 8899999999 99999999999999999999843 12 322 2333322 2333332 12345
Q ss_pred chhHHhHHHHHHHHHHHhchHHHHhCCh---hHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhh
Q 005008 297 DEKVIGGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (719)
Q Consensus 297 d~e~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~ 373 (719)
|.++++++|++|+++|++|...+.+++. -...++++|+.++.++ |+++.++||+||+.|++.++.. +
T Consensus 310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e--------~ 379 (1023)
T 4hat_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P 379 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence 7889999999999999999998876532 2344577999999996 7899999999999999988642 2
Q ss_pred hhHHhhHHHHHHHHHHHHHHhccCCCC-----CCCCC------CCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHH
Q 005008 374 HVEDMFFSVFSALLDALLLRAQVDESS-----FNDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF 442 (719)
Q Consensus 374 ~~~~~~~~~~~~Lv~~l~~k~~~p~~~-----~~~~~------~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~ 442 (719)
.....|+|+|.+|+.++++||+||++. ..++| |.|+.+.|+.|| |+|.+++.+.|+ .++..+++
T Consensus 380 ~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~ 454 (1023)
T 4hat_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMIS 454 (1023)
T ss_dssp TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHH
Confidence 356789999999999999999999842 11234 556667788888 899999998876 46666666
Q ss_pred HhhcC-CCCCCChhHHHHHHHHHHHhhhhcccC-CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHH
Q 005008 443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWI 520 (719)
Q Consensus 443 ~~~~~-~~~~~~W~~~Ea~L~~l~~i~e~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~ 520 (719)
.+... .+.+.+|+.+||++||+|+|++++.++ .+.+ ++.+++.+..++++.....+. .+++.|+|+++|||++|+
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~-l~~vi~~Ll~l~~~~~~~d~k--~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLCVKKRGKDNK--AVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHhhhccccCcch--HHHHHHHHHHHHHHHHHH
Confidence 54321 113468999999999999999998754 2223 567777666677542111111 234445689999999999
Q ss_pred HhCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCC------CchHHHHHHHHHHHHhcCCChhhHHHHH
Q 005008 521 SAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVV 592 (719)
Q Consensus 521 ~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~------p~~~~~l~~~~~~l~~~~l~~~~~~~l~ 592 (719)
..||++|+++++++++++++ |+++.+||.||++||++|+.++.. +++++.++..+.... ..++.+.+..+|
T Consensus 532 ~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~ly 610 (1023)
T 4hat_C 532 KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHTFY 610 (1023)
T ss_dssp HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 99999999999999999964 579999999999999999988742 126666555444322 367889999999
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHH--HHHHHHHHhHhhhhhhhcccccCCCCC
Q 005008 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLPTN 670 (719)
Q Consensus 593 eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~f~~l~~~~~~~ 670 (719)
+|+|.+|+++|+++.+..+++.|+.|+.+.|+++.++... +|..+. +.++.....+++++.+.+.
T Consensus 611 eai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~-----~~~~~~d~~~~~~l~~il~~~~~v~~~-------- 677 (1023)
T 4hat_C 611 KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTA-----NPTLLLDSETVKIIANIIKTNVAVCTS-------- 677 (1023)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----CTTGGGCHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhc-----CchhhcCHHHHHHHHHHHHHHHHHHHH--------
Confidence 9999999999988866899999999999999999875421 222111 1112223333444444333
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHh
Q 005008 671 PAGDDPIFALLRVFWPMLEKLFRS 694 (719)
Q Consensus 671 ~~~~~p~~~~~~~~~p~l~~i~~~ 694 (719)
-.+|..+.++.+||.+-.+.+.
T Consensus 678 --lg~~f~~~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 678 --MGADFYPQLGHIYYNMLQLYRA 699 (1023)
T ss_dssp --HGGGGHHHHHHHHHHHHHHHHH
T ss_pred --hcHHHHHHHHHHHHHHHHHHHH
Confidence 2367888899999988887763
No 3
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3.1e-70 Score=642.55 Aligned_cols=660 Identities=13% Similarity=0.190 Sum_probs=504.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
.+.++++|.++|+ |++++|++|++||++||++|++|.+|..+|..+. +.++|||||++|+++|+++|+.+|+++
T Consensus 27 v~~Le~lv~~ly~-p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~-----~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 27 INLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQ-----NMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHHHHTTTC-SSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CC-----SHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 4679999999994 5788999999999999999999999999997653 569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 005008 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~ 157 (719)
+..||+.|++++.++..+ ++.+++|||.+++.++.+.+ .||++++++++.+++ ++...+.+|++|+.|+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 999999999999876543 37788999999999999975 699999999998875 3457889999999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchh
Q 005008 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (719)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (719)
||+.+.++. .++..||.++++.|...++.+++++.++++... ...+...+|+|+.+|+.| +|.+.+
T Consensus 178 EEV~d~~~~--~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-------~~~lv~~~L~~L~~~~sW-----I~i~~i 243 (1073)
T 3gjx_A 178 EEVFDFSSG--QITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-------NAPLVHATLETLLRFLNW-----IPLGYI 243 (1073)
T ss_dssp HHHTTSHHH--HBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTTT-----SCTHHH
T ss_pred HHHHhcccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHHh-----cCHHHh
Confidence 999765332 267889999999999999999999999997642 245667777787777777 466777
Q ss_pred cccchHHHH-HHhcCCCChHHHHHHHHHHHhhcCC-Ch---hHHHHHhhhh-----------hHHHchhhhhhcCchhHH
Q 005008 238 AAHPLLNFV-FNSLQVQSSFDVAIEVLVELVGRHE-GL---PQALLCRVPF-----------LKELLLLPALTDGDEKVI 301 (719)
Q Consensus 238 ~~~~ll~~~-~~~l~~~~~~~~a~~~l~eil~~~~-~~---~~~l~~~~~~-----------l~~~~~~~a~~~~d~e~~ 301 (719)
.++++++.+ |..|++++++++|++||++|+++.. ++ +..++..++. +.+.+. ...++|.+++
T Consensus 244 ~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~--~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS--NGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH--TCCTTHHHHH
T ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHh--ccchhhHHHH
Confidence 889999988 7999999999999999999999742 22 2234444432 122211 1245677899
Q ss_pred hHHHHHHHHHHHhchHHHHhCCh---hHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchh----h------
Q 005008 302 GGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS----I------ 368 (719)
Q Consensus 302 ~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~----~------ 368 (719)
+++|++|+++|++|...+.++|+ .....+++++.|+++| |+++.++||+||+.|.++++...+. .
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~ 399 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGS 399 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999988754 3567788999999997 8999999999999999998743210 0
Q ss_pred -hhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHh---------hHHHHHHHHhcCchHHHH
Q 005008 369 -AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNL---------VELLVDICQLLRSATFIQ 438 (719)
Q Consensus 369 -~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~---------~d~l~~~~~il~~~~~l~ 438 (719)
.++.+.....|+|+|.+|+.+++.||.||++.+.. ++|+.|.|++||++. +|++.+++. ++.+.++.
T Consensus 400 ~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~--e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~-l~~~~~~~ 476 (1073)
T 3gjx_A 400 QHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV--ENDQGEVVREFMKDTDSINLYKNMRETLVYLTH-LDYVDTEI 476 (1073)
T ss_dssp CCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE--ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH-HCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCcccccc--CcccchHHHHHHhhcchHHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 00123456789999999999999999999985431 234455566666544 444444433 45555666
Q ss_pred HHHHHhhcC-CCCCCChhHHHHHHHHHHHhhhhcccC-CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhh
Q 005008 439 KVFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (719)
Q Consensus 439 ~~~~~~~~~-~~~~~~W~~~Ea~L~~l~~i~e~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y 516 (719)
.+++.+... .+..++|+.+||++|++|+|++.+.++ ++.+ ++.+++.+..+|++++...+. +++++++|+++|+|
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~-Lp~vi~~Ll~L~e~~~~kd~k--~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF-LVTVIKDLLGLCEQKRGKDNK--AIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHHHHSCSHHHH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch-HHHHHHHHhcccccccccchh--HHHHHHHHHHHhhh
Confidence 666654321 123578999999999999999877642 3334 788888888899877533222 46677778999999
Q ss_pred HHHHHhCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCC------chHHHHHHHHHHHHhcCCChhhH
Q 005008 517 SKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEP------SNLEILMWIGEALEKRHLPLEDE 588 (719)
Q Consensus 517 ~~~~~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p------~~~~~l~~~~~~l~~~~l~~~~~ 588 (719)
++|+..||+||.++++++++++++ |+|+.+||.||.+||++|+++++.. ++++.++..+... ...++.++.
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~-~~~l~~~~~ 632 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTI-ICDLQPQQV 632 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHH-HTTCCHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH-HHhcCHHHH
Confidence 999999999999999999999985 6799999999999999999988541 2555555444332 457889999
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhHHHHHHHHHHhHhhhhhhhcccccCC
Q 005008 589 EEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (719)
Q Consensus 589 ~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~ 667 (719)
..+|+|+|.+++++|++..+..+++.++.|.+++|+++.++...+ +...++. .+++++.++++....-
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~-----------~i~~l~~il~~n~~v~ 701 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPE-----------TVKQLGSILKTNVRAC 701 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChH-----------HHHHHHHHHhhhHHHH
Confidence 999999999999999988668999999999999999999754321 1111221 1445566666432100
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhcccc-------------HHHHHHHHHHHHHH
Q 005008 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHMENG-------------NLSTAACRALSLAI 714 (719)
Q Consensus 668 ~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~-------------~vie~~c~~~~~~~ 714 (719)
.+-.+|..+.+..+||-+-.+.+. +.+.. ....+.||++|+.+
T Consensus 702 ---~~~g~~f~~~~~~i~~~~l~~y~~-~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~ei 757 (1073)
T 3gjx_A 702 ---KAVGHPFVIQLGRIYLDMLNVYKC-LSENISAAIQANGEMVTKQPLIRSMRTVKRET 757 (1073)
T ss_dssp ---HHHCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHH
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhhccHHHHHHHHHHHHH
Confidence 123588999999999977766652 32211 14558889999766
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=5.2e-65 Score=614.43 Aligned_cols=664 Identities=21% Similarity=0.349 Sum_probs=520.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (719)
Q Consensus 5 ~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~ 84 (719)
..++|.++++++|.++|++.|++|++||++||++|++|.+|..||..+ .+.++|||||++|+++|+++|+.+|++
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD-----KVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 477899999998888899999999999999999999999999999753 356999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccC---CCchhHHHHHHHhhhhhc
Q 005008 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS---QDNGNMAVLEMLTVLPEE 159 (719)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~---~~~~~~~~L~~L~~l~EE 159 (719)
++..+|+.|++++..+.++++.|++|+|.+++.++.+.+ .||+++++++..+++..+ ++...+.++++|+.++||
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 999999999999988765689999999999999999865 699999999998865110 233678999999999999
Q ss_pred cccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcc
Q 005008 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (719)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~ 239 (719)
+.+.+ .+..+|..+++.+....+.|+.++.++++...+ ...+...+++|+.+|+..+ .+ ....
T Consensus 177 ~~~~~-----~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~~~~~~~l~~l~~wi~~~----~~--~~~~ 239 (963)
T 2x19_B 177 FQTSR-----LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PSCVRQKVLKCFSSWVQLE----VP--LQDC 239 (963)
T ss_dssp HTTCC-----C---------CCSGGGHHHHHHHHHHHHSCTTC------CHHHHHHHHHHHHHHHTSS----CC--GGGT
T ss_pred Hhccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHHHHcCC----CC--cccc
Confidence 86532 355677777778888999999999999975421 1247889999999999853 22 2245
Q ss_pred cchHHHHHHhcCCCChHHHHHHHHHHHhhcCC-----ChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHh
Q 005008 240 HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (719)
Q Consensus 240 ~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~-----~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~ 314 (719)
+++++.+|+.+.+++.++.|++|+.+++..+. +.+..+++.++.+.+.+. .+..++|.+..+++|++|+.+|+.
T Consensus 240 ~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 240 EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLR-QAVQNGDMETSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHH-HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998653 133456666665544432 244567788999999999999999
Q ss_pred chHHHHhC---ChhHHHHHHHHHhhccCCC---CCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHH
Q 005008 315 APSLIVEA---SPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLD 388 (719)
Q Consensus 315 ~~~~l~~~---~~~~~~ll~~ll~~~~~p~---~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~ 388 (719)
+...+..+ ++++..++++|+.++.+|| .|++++..+++||+.+.+.+...+.+. .+.....++|++.++++
T Consensus 319 ~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 319 HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK---QAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHH
Confidence 99888753 3567899999999999863 356789999999999998664443211 23567788999999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHh---hcCCCCCCChhHHHHHHHHHH
Q 005008 389 ALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS---WGSANVPIPWKEVETKLFALN 465 (719)
Q Consensus 389 ~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~---~~~~~~~~~W~~~Ea~L~~l~ 465 (719)
+++.+|.||+++..++|+.||+++|++||++++|++.+++.+.|.+ ++..+++.+ ......+.+|+.+||++|+++
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~ 474 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ 474 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 9999999998743234665667889999999999999999998854 454444332 111113468999999999999
Q ss_pred HhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcCchHH
Q 005008 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSN 545 (719)
Q Consensus 466 ~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~v~~ 545 (719)
++++++.++.... ++.+++.+..+++ +++ .++.+ +|+++|+|++|+..||+++++++++++.+|++|.|+.
T Consensus 475 ~i~~~~~~~~~~~-l~~l~~~l~~l~~-~~~------~vr~~-~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~ 545 (963)
T 2x19_B 475 SIAETIDVNYSDV-VPGLIGLIPRISI-SNV------QLADT-VMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSV 545 (963)
T ss_dssp HHTTSCCSSCCSH-HHHHHHHGGGSCC-CSH------HHHHH-HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHH
T ss_pred HHHhhcCchhhHH-HHHHHHHHHhCCC-CcH------HHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHH
Confidence 9999987654322 4556555444443 232 25665 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHH
Q 005008 546 ACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIG 624 (719)
Q Consensus 546 ~Aa~al~~lc~~c~~~l~~p~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~ 624 (719)
+||.||.+||++|+..+. | +.+.++. +...+.++.++.+.+..+++++|.++.++|.++ ...+++.+++|+.+.|+
T Consensus 546 ~A~~al~~l~~~~~~~l~-p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~-~~~~~~~l~~~l~~~l~ 622 (963)
T 2x19_B 546 SSVSTLKKICRECKYDLP-P-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE-ILKNLHSLISPYIQQLE 622 (963)
T ss_dssp HHHHHHHHHHHHTGGGCT-T-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999885 5 5555544 444444445678899999999999999998444 47899999999999999
Q ss_pred hhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCC------------CCCCchHHHHHHHHHHHHHHHH
Q 005008 625 KLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN------------PAGDDPIFALLRVFWPMLEKLF 692 (719)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~------------~~~~~p~~~~~~~~~p~l~~i~ 692 (719)
++.++.. ++... ......+++|+.+++.+....... +..++|+..+++.+||++..++
T Consensus 623 ~~~~~~~------~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 692 (963)
T 2x19_B 623 KLAEEIP------NPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL 692 (963)
T ss_dssp HHHSSCS------CHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC------CHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 9865331 11111 223456788888888876432110 1246889999999999999999
Q ss_pred HhhhccccHHHHHHHHHHHHHHHhcC
Q 005008 693 RSEHMENGNLSTAACRALSLAIQSSG 718 (719)
Q Consensus 693 ~~~~~~~~~vie~~c~~~~~~~~~~g 718 (719)
+. |..+.+++|.+|+++++++.++|
T Consensus 693 ~~-~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 693 SK-WLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHSS
T ss_pred Hh-ccCchHHHHHHHHHHHHHHHhhc
Confidence 94 99999999999999999999887
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-66 Score=625.54 Aligned_cols=669 Identities=16% Similarity=0.286 Sum_probs=502.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
.++|.++++++| +||++.|++|++||++||++|++|.+|.+||..+. +.++|||||++|++||+++|+.+|+++
T Consensus 6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~-----~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGK-----SQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTS-----CHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 567999999988 57888999999999999999999999999997643 569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCCChHHHHHHHhhhccC----CCchhHHHHHHHhhhhhcc
Q 005008 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLTVLPEEV 160 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~-~W~~~i~~li~~l~~~~~----~~~~~~~~L~~L~~l~EE~ 160 (719)
+..+|+.|++++.....+++.|++|||.+++.++.+.+ .||+++++++..++++.. ++...+.++++|+.+|||+
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHH
Confidence 99999999999988766789999999999999999987 899999999999875210 1246789999999999998
Q ss_pred ccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhccc
Q 005008 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH 240 (719)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~ 240 (719)
...+ +..+|..+++.+....+.++.++.++++...+++......++...+++|+.+|+.++ .+|.+ ..+
T Consensus 160 ~~~~------~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~---~ip~~--~~~ 228 (971)
T 2x1g_F 160 QVIH------TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI---GYTIE--GCV 228 (971)
T ss_dssp HHCC------CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS---CCCGG--GHH
T ss_pred hccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC---CcCcc--ccc
Confidence 6321 445778888999999999999999998764321100001268899999999999952 24555 567
Q ss_pred chHHHHHHhc------------------CCCChHHHHHHHHHHHhhcCC-----ChhHHHHHhhhhhHHHchhhhhhcCc
Q 005008 241 PLLNFVFNSL------------------QVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPALTDGD 297 (719)
Q Consensus 241 ~ll~~~~~~l------------------~~~~~~~~a~~~l~eil~~~~-----~~~~~l~~~~~~l~~~~~~~a~~~~d 297 (719)
++++.+|+ | .+++.+++|++|+.++++.++ +++..+++.++.+.+.+. .+..++|
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d 306 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-KTEWKRE 306 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-HHHSSSS
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-HHHhccc
Confidence 89999988 6 467789999999999998643 245567777777665443 2445556
Q ss_pred h---hHHhHHHHHHHHHHHhchHHHH----h----CChhHHHHHHHHHhhccCCC---CCchhhhhhHHHHHHHHHHHhc
Q 005008 298 E---KVIGGLACLMSEIGQAAPSLIV----E----ASPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILG 363 (719)
Q Consensus 298 ~---e~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~p~---~d~~v~~~~~~FW~~l~e~l~~ 363 (719)
. +....+|++|+.+|+.+...+. + +++++..+++.|+.++.+|| .|++++..+++||+.+.+...+
T Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~ 386 (971)
T 2x1g_F 307 NDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFA 386 (971)
T ss_dssp CSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHh
Confidence 4 8899999999999999998886 3 23467889999999998853 3678999999999999985533
Q ss_pred cchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHH
Q 005008 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG 443 (719)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~ 443 (719)
++.+. +.+.....++|+|.+++++++.|+.||+++..++||.+|+++|.+||+.++|++.+++.++|. .++..++..
T Consensus 387 ~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~ 463 (971)
T 2x1g_F 387 MSNDE--QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAM 463 (971)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHH
T ss_pred ccccc--chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 32110 013456788999999999999999999886545677777889999999999999999999884 455555443
Q ss_pred hhc----CCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhcc-CchhhhhhHHHHHHHHHHHHHHhhHH
Q 005008 444 SWG----SANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA-SRSEELKGFMHIVYRSLADVIGSYSK 518 (719)
Q Consensus 444 ~~~----~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~-~~~~~~~~~~~l~~~t~~~~ig~y~~ 518 (719)
+.. ....+.+|+.+||++|+++++++++..+.... ++.+++++..++. ++++ .++.+ +|+++|+|++
T Consensus 464 l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~-l~~l~~~l~~l~~~d~~~------~vr~~-a~~~l~~~~~ 535 (971)
T 2x1g_F 464 LDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQ-IPRLMRVLAEIPYEKLNV------KLLGT-ALETMGSYCN 535 (971)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CH-HHHHHHHHHHSCTTTSCH------HHHHH-HHHHHHHTHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHH-HHHHHHHHHhcCccccCH------HHHHH-HHHHHHHHHH
Confidence 211 00123689999999999999999998654432 6777777777774 2343 25665 4799999999
Q ss_pred HHHhCccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHH
Q 005008 519 WISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISL 597 (719)
Q Consensus 519 ~~~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ 597 (719)
|+..||++++++++++++++ +|.|+.+||.||.+||++|+..+. | +.+.|++ +...+.++.++.+++..+++++|.
T Consensus 536 ~l~~~~~~l~~vl~~l~~~l-~~~v~~~A~~al~~l~~~~~~~l~-p-~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 536 WLMENPAYIPPAINLLVRGL-NSSMSAQATLGLKELCRDCQLQLK-P-YADPLLNACHASLNTGRMKNSDSVRLMFSIGK 612 (971)
T ss_dssp HHC----CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHCHHHHH-H-HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999 599999999999999999999885 5 5655554 445555555788999999999999
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCCCC---CC
Q 005008 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPA---GD 674 (719)
Q Consensus 598 vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~~~---~~ 674 (719)
+++++|.++. ..++..++.|+++.++++.+.... ++.. ....+..+++|+.+++.+....+.+.. ..
T Consensus 613 i~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~~-----~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~ 682 (971)
T 2x1g_F 613 LMSLLRPEEI-PKYLDIIVSPCFEELQAICQADSK-----TPAA----RIRTIFRLNMISTLFSSLNTDVDEQATDQPIV 682 (971)
T ss_dssp HHHTSCTTHH-HHHHHHHHHHHHHHHHHHHTC--------CHHH----HHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHhCCHHHH-HHHHHHHHHHHHHHHHHHHhcCCC-----Chhh----HHHHHHHHHHHHHHHhhcCCCcCcccccccCC
Confidence 9999985554 789999999999999998765421 0001 122344677788888887653211110 16
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhcC
Q 005008 675 DPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (719)
Q Consensus 675 ~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~g 718 (719)
+|+.++.+++||++..+++ .+..+.+|+|++|++++++++++|
T Consensus 683 ~~~~~~~~~i~~~l~~~l~-~~~~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 683 QPVLLVMQRTMPIFKRIAE-MWVEEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp -CCHHHHHTTHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999998 488899999999999999998876
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-55 Score=535.24 Aligned_cols=659 Identities=15% Similarity=0.175 Sum_probs=482.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~ 85 (719)
.+++.++++++| +|+++.|++|+++|++||++|++|.+|..+|..+. +.++|||||++|+++|+++|..+|+++
T Consensus 15 ~~~l~~~l~~~~-~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~-----~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFY-QGSGVQQKQAQEILTKFQDNPDAWQKADQILQFST-----NPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCS-----CHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHh-CCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 567999999999 56677899999999999999999999999997643 569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 005008 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (719)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~ 157 (719)
+..||+.|++++.....+ ++.|++|+|.++|.++.+.. .||++++++++.+++ ++...+..+.+|+.|+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHH
Confidence 999999999999875433 37899999999999999864 699999999999863 3445789999999999
Q ss_pred hccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchh
Q 005008 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (719)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (719)
||+.+.+.. .++..+|..+++.+....+.++.++.++++... ...++..+|+|+.+|+.| +|.+.+
T Consensus 166 eev~~~~~~--~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-------~~~~~~~aL~~l~~~l~w-----i~~~~~ 231 (1049)
T 3m1i_C 166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-------SSSLIVATLESLLRYLHW-----IPYRYI 231 (1049)
T ss_dssp HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTTT-----SCTHHH
T ss_pred HHHHHhcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhh-----CCHHHH
Confidence 999753221 256678888888888899999999999997642 246889999999999987 455555
Q ss_pred cccchHHHHH-HhcCCCChHHHHHHHHHHHhhcCC-C----hhH---HHHHhhhh-h-----------HHHchhhhhhcC
Q 005008 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE-G----LPQ---ALLCRVPF-L-----------KELLLLPALTDG 296 (719)
Q Consensus 238 ~~~~ll~~~~-~~l~~~~~~~~a~~~l~eil~~~~-~----~~~---~l~~~~~~-l-----------~~~~~~~a~~~~ 296 (719)
..+++++.++ ..+.+++++++|++|++++++... + +.. .+++.++. + ...+. ...++
T Consensus 232 ~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~--~~~~~ 309 (1049)
T 3m1i_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1049)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH--HTCTT
T ss_pred hhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc--cCCcc
Confidence 5688999988 455688899999999999998752 1 112 23333333 1 11221 12355
Q ss_pred chhHHhHHHHHHHHHHHhchHHHHhCC---hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhh
Q 005008 297 DEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (719)
Q Consensus 297 d~e~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~ 373 (719)
|.+..+++|++|+++++.+...+...+ +.+..++++++.++.++ |.+++..+++||+.+.++++.. +
T Consensus 310 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~--------~ 379 (1049)
T 3m1i_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P 379 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHS--------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence 777889999999999999998886532 34678899999999996 7889999999999999975320 2
Q ss_pred hhHHhhHHHHHHHHHHHHHHhccCCCCCCCC-CCC------CCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhc
Q 005008 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMV------DLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG 446 (719)
Q Consensus 374 ~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~-~~~------d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~ 446 (719)
.....++|++.+|+++++.||+||+|..+.+ ++. ++++|-..+|+.++|++..++.+.| +.++..+++.+..
T Consensus 380 ~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLAR 458 (1049)
T ss_dssp TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Confidence 4567789999999999999999997643211 110 1112222567789999999987654 4455555554322
Q ss_pred C-CCCCCChhHHHHHHHHHHHhhhhcccC-CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc
Q 005008 447 S-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (719)
Q Consensus 447 ~-~~~~~~W~~~Ea~L~~l~~i~e~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p 524 (719)
. .+.+.+|+.+||++|+++++++++... ++.+ ++.+++.+..++.......+ +++++.++|+++|+|++|+..||
T Consensus 459 ~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~-l~~v~~~l~~l~~~~~~~~~--~~~v~~~~~~~lgry~~~~~~~~ 535 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLTVKKRGKDN--KAVVASDIMYVVGQYPRFLKAHW 535 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHTTSSCSHHH--HHHHHHHHHHHHHHCHHHHHHCH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHhhhccccc--hHHHHHHHHHHHHHHHHHHHhHH
Confidence 1 113568999999999999999987643 1222 56777777777654211001 12455446899999999999999
Q ss_pred cchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccC-------CCchHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 005008 525 TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALID-------EPSNLEILMWIGEALEKRHLPLEDEEEVVGAI 595 (719)
Q Consensus 525 ~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~-------~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai 595 (719)
+++++++++++.+|++ |.|+.+||.||.+||++|+..+. .| +++.+++.+..+. ..++.++...+++|+
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p-~~~~il~~l~~~~-~~~~~~~~~~~~eai 613 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP-FIQTIIRDIQKTT-ADLQPQQVHTFYKAC 613 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC-HHHHHHHTHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc-HHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 9999999999999987 56999999999999999998863 24 5555554443332 246788899999999
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhH---HHHH---HHHHHhHhh------------h
Q 005008 596 SLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATY---TQIL---SSATRGLYR------------M 656 (719)
Q Consensus 596 ~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~-~~~~~~~~~---~~~~---~~~~~~l~~------------l 656 (719)
|.++++.|+.+.+..++..+++|++++|+++++....+ +...++... ...+ ..+++.+.. +
T Consensus 614 ~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~ 693 (1049)
T 3m1i_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNM 693 (1049)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999644458899999999999999987654211 111122111 1111 111111110 0
Q ss_pred hhhhccccc----C--CCCCCCCCchHHHHHHHHHHHHHHHHHhhhccccHHHHHH
Q 005008 657 GTVFSHLPV----P--LPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706 (719)
Q Consensus 657 ~~~f~~l~~----~--~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~ 706 (719)
..+|+.... . ........+|....++.+||.+..++.. |..+.+++|.+
T Consensus 694 l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~-~~~~~~~l~~~ 748 (1049)
T 3m1i_C 694 LQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVET-YISKARNLDDV 748 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH-HHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHH
Confidence 122222100 0 0000124689999999999999999984 77665544443
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.3e-53 Score=518.56 Aligned_cols=659 Identities=15% Similarity=0.131 Sum_probs=478.2
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008 6 QIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (719)
Q Consensus 6 ~~~v~~av~~ly~~-~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~ 84 (719)
.++|.+++.++|++ +|++.|++|+++|++||++|++|..+..+|...+ .+.++||||+++|+++|+++|..++++
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s----~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKT----QVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTT----SCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 45688999999864 4778899999999999999999999999886222 467999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhh
Q 005008 85 AKDALLNALLVAAKRFSS----GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (719)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~----~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~E 158 (719)
++..||+.+++++..... .++.|++|+|.+++.++.+.. .||++++++++.+++ ++...+..|.+|..|+|
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 999999999999886532 468999999999999999875 599999999998865 34567899999999999
Q ss_pred ccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccC---------CCC--CcchhhhHHHHHHHHHHHHHcc
Q 005008 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFD---------GGV--PVQLHDRNRKILRCLLSWVRAG 227 (719)
Q Consensus 159 E~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~---------~~~--~~~~~~l~~~~l~c~~sWi~~~ 227 (719)
|+.+.+. +...+|+.+++.+..+.+.++.++.+++....+ ++. ..+...+...+|+|+.+|+.|
T Consensus 163 ev~~~~~----~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W- 237 (1204)
T 3a6p_A 163 DVVTFQT----LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW- 237 (1204)
T ss_dssp HHHTSCC----SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT-
T ss_pred HHccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc-
Confidence 9876532 456788888899999999999999888765210 000 002245788999999999997
Q ss_pred cccccCcchhccc--chHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhH--HHHHhhhh---hHHHchhhhh-------
Q 005008 228 CFTEISQGSLAAH--PLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPF---LKELLLLPAL------- 293 (719)
Q Consensus 228 ~~~~~~~~~~~~~--~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~--~l~~~~~~---l~~~~~~~a~------- 293 (719)
+|.+.+... .+++.++..+.+++++.+|++||+++++++++... .++. ++. +...+. .+.
T Consensus 238 ----i~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~-~l~~~~l~~l~~-~~~~~~~~~~ 311 (1204)
T 3a6p_A 238 ----VSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMV-LFGDVAMHYILS-AAQTADGGGL 311 (1204)
T ss_dssp ----SCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGG-GGSHHHHHHHHH-HHHTCCCCSC
T ss_pred ----cCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHH-HHhhHHHHHHHH-HhhcCCCCCC
Confidence 455554333 49999999999999999999999999998764211 1111 111 112221 111
Q ss_pred hcCchhHHhHHHHHHHHHHHhchHHHHh-----CChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhh
Q 005008 294 TDGDEKVIGGLACLMSEIGQAAPSLIVE-----ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASI 368 (719)
Q Consensus 294 ~~~d~e~~~~l~~l~~~~~e~~~~~l~~-----~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~ 368 (719)
.++|.++++++|++++++|+.+...+.+ .++++..++++|+.++.|| +.+++..+++||+.+.+... .
T Consensus 312 ~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~-~---- 384 (1204)
T 3a6p_A 312 VEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEI-L---- 384 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTT-T----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhccc-c----
Confidence 3446788999999999999987776653 3456889999999999998 78899999999998776531 1
Q ss_pred hhhhhhhHHhhHHHHHHHHHHH---HHHhccCCCCCC-------CCCC--CCCCchHHHHHhHhhHHHHHHHHhcCch--
Q 005008 369 AKNKKHVEDMFFSVFSALLDAL---LLRAQVDESSFN-------DDGM--VDLPDGLVQFRMNLVELLVDICQLLRSA-- 434 (719)
Q Consensus 369 ~~~~~~~~~~~~~~~~~Lv~~l---~~k~~~p~~~~~-------~~~~--~d~~d~f~~~R~~~~d~l~~~~~il~~~-- 434 (719)
.....+++++.+|++++ +.|++||++... ++.| +|.++.|.+||++++|++++++.+.+..
T Consensus 385 -----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l 459 (1204)
T 3a6p_A 385 -----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSF 459 (1204)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 11245889999999999 889999986431 1111 1222578999999999999999886433
Q ss_pred -HHHHHHHHHhhcC--------------------CCCCCChhHHHHHHHHHHHhhhhccc--CCcccc---hhHHHHHHH
Q 005008 435 -TFIQKVFFGSWGS--------------------ANVPIPWKEVETKLFALNVVSEVVLQ--EGQAFD---FSVIMQLVA 488 (719)
Q Consensus 435 -~~l~~~~~~~~~~--------------------~~~~~~W~~~Ea~L~~l~~i~e~~~~--~~~~~~---l~~i~~ll~ 488 (719)
.+...+.+.+... ...+..|...||..+++.++++++.. +.+... .+.+++.+.
T Consensus 460 ~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll 539 (1204)
T 3a6p_A 460 QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVL 539 (1204)
T ss_dssp HHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 1223333332210 01134599999999999999998832 112111 233444433
Q ss_pred Hh-ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCc--------------CchHHHHHHHHHH
Q 005008 489 VL-SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--------------AVSSNACASALRK 553 (719)
Q Consensus 489 ~l-~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~--------------~~v~~~Aa~al~~ 553 (719)
.+ +++|. ++++. +.++|+|++|+.+||++|+++|++++.++.+ .+++.+||.+|.+
T Consensus 540 ~~~~~~p~--------l~~~~-i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 540 NFDTKDPL--------ILSCV-LTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HCCCSCHH--------HHHHH-HHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCChH--------HHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 33 33443 45554 6999999999999999999999999988865 1589999999999
Q ss_pred HHHHhhcccCCCchHHHHHHHHHH-HHhcC-CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHh-----h
Q 005008 554 ICEDASALIDEPSNLEILMWIGEA-LEKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGK-----L 626 (719)
Q Consensus 554 lc~~c~~~l~~p~~~~~l~~~~~~-l~~~~-l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~-----~ 626 (719)
||++|+..|. | +.+.|.+.+.. +..+. ++.+++..+++|++.+...+|+++.+..+++.+++|++++|++ .
T Consensus 611 L~~~~~~~L~-p-~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~ 688 (1204)
T 3a6p_A 611 MCRDYPQLVL-P-NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRV 688 (1204)
T ss_dssp HHHHCHHHHG-G-GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhHHHH-H-HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHh
Confidence 9999999986 4 77777666554 44566 8899999999999999766677776677899999999999985 2
Q ss_pred hcccC---------CC---CCCCCchhH-HH----HHHHHHHhHhhh---------hhh-hcccccCCCCCCCCCchHHH
Q 005008 627 IDGDN---------NH---SLIHNPATY-TQ----ILSSATRGLYRM---------GTV-FSHLPVPLPTNPAGDDPIFA 679 (719)
Q Consensus 627 ~~~~~---------~~---~~~~~~~~~-~~----~~~~~~~~l~~l---------~~~-f~~l~~~~~~~~~~~~p~~~ 679 (719)
+.... .. ....++... .. .+......++++ +.. |-....+. .++...||+.+
T Consensus 689 ~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~~-~~p~~~~p~~~ 767 (1204)
T 3a6p_A 689 LSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSS-GNPIFRNPCTE 767 (1204)
T ss_dssp HHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECSS-CCEEECCTTHH
T ss_pred hcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCCC-CCccccCchHH
Confidence 22211 00 000111111 01 111222233332 111 22221111 12344689999
Q ss_pred HHHHHHHHHHHHHHhhhc--cccHHHHHHH
Q 005008 680 LLRVFWPMLEKLFRSEHM--ENGNLSTAAC 707 (719)
Q Consensus 680 ~~~~~~p~l~~i~~~~~~--~~~~vie~~c 707 (719)
.+..+||.+-+++.. +. .++++.+.+|
T Consensus 768 ~i~~ilP~ll~Ll~~-~~~l~~p~~~~~l~ 796 (1204)
T 3a6p_A 768 QILKLLDNLLALIRT-HNTLYAPEMLAKMA 796 (1204)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTSHHHHTTSC
T ss_pred HHHHHhHHHHHHHHH-HHHhcCcHhhhhcC
Confidence 999999999999985 55 6789999888
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=3.5e-32 Score=326.64 Aligned_cols=607 Identities=12% Similarity=0.067 Sum_probs=381.5
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccC---
Q 005008 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--- 79 (719)
Q Consensus 3 ~~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~--- 79 (719)
|+..+++.+++.+.. +||++.| |+++|++++++|+.|..+.+++.+.+ .+.++|+|||++||++|+++|.
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~----~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTN----LPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 335678999998865 6777766 99999999999999999999997553 3569999999999999999998
Q ss_pred ---CCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHh
Q 005008 80 ---YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (719)
Q Consensus 80 ---~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~ 154 (719)
.+|++++..||+.|++.+.. .++.|++|+|.+++.++.+.. .||++++++++.++++ ++......|.+|.
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~ 148 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--DMVTNKGVLTVAH 148 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--CTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 89999999999999999875 458899999999999998754 6999999999998764 4567788888888
Q ss_pred hhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHH---hhcccCCCC-CcchhhhHHHHHHHHHHHHHccccc
Q 005008 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ---SDKRFDGGV-PVQLHDRNRKILRCLLSWVRAGCFT 230 (719)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~---l~~~~~~~~-~~~~~~l~~~~l~c~~sWi~~~~~~ 230 (719)
.+++.... . ..+++.+..+...+....+.+++++.+. ++...++.. ......+...+++++.+-..+
T Consensus 149 ~i~~~~~~---~--~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~---- 219 (960)
T 1wa5_C 149 SIFKRWRP---L--FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ---- 219 (960)
T ss_dssp HHHGGGTT---S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHH---h--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 88886521 0 0233445555556666788787877654 432211000 000012233455555442211
Q ss_pred ccCcchhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcC---c-hhHHhHHHH
Q 005008 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDG---D-EKVIGGLAC 306 (719)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~---d-~e~~~~l~~ 306 (719)
.+|... . + .+...+..+..++.... ......-.++ . ....+.+++
T Consensus 220 ~~~~~~-------~---~------~~~~~~~~~~~~l~~~~---------------p~~~~d~d~~~~~~~~~vk~~~~~ 268 (960)
T 1wa5_C 220 DIPEFF-------E---D------NIQVGMGIFHKYLSYSN---------------PLLEDPDETEHASVLIKVKSSIQE 268 (960)
T ss_dssp CCCHHH-------H---H------THHHHHHHHHHHHSCCS---------------CCCC------CCCHHHHHHHHHHH
T ss_pred cchHHH-------H---H------HHHHHHHHHHHHHcCCC---------------CcccCCcccccccHHHHHHHHHHH
Confidence 112110 0 0 01111111111111100 0000000000 0 123457788
Q ss_pred HHHHHHHhchHHHHhCChhHHHHHHHHHhhcc---CCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhH--H
Q 005008 307 LMSEIGQAAPSLIVEASPEALALADALLSCVA---FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFF--S 381 (719)
Q Consensus 307 l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~---~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~--~ 381 (719)
.++.+.+.|...+.. +...+++.++.... ....++++...+++||..+.+. +.....++ |
T Consensus 269 ~l~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~------------~~~~~~~~~~~ 333 (960)
T 1wa5_C 269 LVQLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI------------PKYFEIFNNES 333 (960)
T ss_dssp HHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS------------HHHHGGGCSHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc------------HhHHHHHcCch
Confidence 888888888877743 34455555555443 1112457888999999987652 12234555 9
Q ss_pred HHHHHH-HHHHHHhccCCCCCCCCCCCC---------CCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHH----hhcC
Q 005008 382 VFSALL-DALLLRAQVDESSFNDDGMVD---------LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG----SWGS 447 (719)
Q Consensus 382 ~~~~Lv-~~l~~k~~~p~~~~~~~~~~d---------~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~----~~~~ 447 (719)
++.+++ .+++..|.|++++. +.|+.| |.+++...|+..++++..++...| +.++..++.. +...
T Consensus 334 ~l~~li~~~i~~~m~~~~~d~-e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 334 AMNNITEQIILPNVTLREEDV-ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQY 411 (960)
T ss_dssp HHHHHHHHTHHHHHSCCGGGT-TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhcCCCHHHH-HHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHh
Confidence 999999 78899999976533 233322 134555678888899998888877 3344333322 2110
Q ss_pred -CCCCCChhHHHHHHHHHHHhhhhcc--c-C-C---cccchhH-HHHH-HHHhccCchhhhhhHHHHHHHHHHHHHHhhH
Q 005008 448 -ANVPIPWKEVETKLFALNVVSEVVL--Q-E-G---QAFDFSV-IMQL-VAVLSASRSEELKGFMHIVYRSLADVIGSYS 517 (719)
Q Consensus 448 -~~~~~~W~~~Ea~L~~l~~i~e~~~--~-~-~---~~~~l~~-i~~l-l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~ 517 (719)
.+.+.+|+..||+++++++++++.. . . . ...++.. +.+. ++.+. ++.+.++ .+|+++ |+++|+|+
T Consensus 412 ~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~-~~~~~~p---~vr~~a-~~~lg~~~ 486 (960)
T 1wa5_C 412 MSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT-SNNIPHI---ILRVDA-IKYIYTFR 486 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH-CSSCSCH---HHHHHH-HHHHHHTG
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc-CCCCCCc---eehHHH-HHHHHHHH
Confidence 1134679999999999999987531 1 1 1 0001223 2332 33333 2311111 266664 79999999
Q ss_pred HHHHhCccchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHH-----------hhcccCCCchHHHHHHHHHHHHhcC--
Q 005008 518 KWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED-----------ASALIDEPSNLEILMWIGEALEKRH-- 582 (719)
Q Consensus 518 ~~~~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~-----------c~~~l~~p~~~~~l~~~~~~l~~~~-- 582 (719)
+|+ +|+++.++++.++++|.++. |+.+||.||.+||+. ++..+ .|+..+++..+...+....
T Consensus 487 ~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l-~p~l~~ll~~L~~ll~~~~~~ 563 (960)
T 1wa5_C 487 NQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNLIALILKHGSS 563 (960)
T ss_dssp GGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT-TTTHHHHHHHHHHHHHTTCCC
T ss_pred hhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHh-hhhHHHHHHHHHHHHHhccCC
Confidence 998 68899999999999998854 899999999999973 23445 4644444555555544321
Q ss_pred -CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhc
Q 005008 583 -LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661 (719)
Q Consensus 583 -l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~ 661 (719)
.+..+...++++++.++...+.+ . .+++..++++++..+++..+... ++.. ....+++++.+.+
T Consensus 564 ~~~~~~~e~l~~al~~vv~~~~~~-~-~p~~~~l~~~L~~~l~~~~~~~~------~~~~-------~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 564 PEKLAENEFLMRSIFRVLQTSEDS-I-QPLFPQLLAQFIEIVTIMAKNPS------NPRF-------THYTFESIGAILN 628 (960)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTT-T-GGGHHHHHHHHHHHHHHHTTSCC------CHHH-------HHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHHHhCCC------CcHH-------HHHHHHHHHHHHh
Confidence 11225679999999999988654 3 46788888888888887654321 1111 1224667777766
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccc--cHHHHHHHHHHH
Q 005008 662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMEN--GNLSTAACRALS 711 (719)
Q Consensus 662 ~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~--~~vie~~c~~~~ 711 (719)
. ..+.+...+.+.+||++..++++ ...+ +.+.+.++.+++
T Consensus 629 ~---------~~~~~~~~~~~~~~p~~~~iL~~-~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 629 Y---------TQRQNLPLLVDSMMPTFLTVFSE-DIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp T---------SCGGGHHHHHHHHHHHHHHHHHT-TCTTTHHHHHHHHHHHHH
T ss_pred c---------CCcchHHHHHHHHHHHHHHHHHh-hhHhhHHHHHHHHHHHHH
Confidence 5 12356778889999999999984 4433 224444444443
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.5e-31 Score=316.09 Aligned_cols=517 Identities=14% Similarity=0.151 Sum_probs=365.2
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCCh
Q 005008 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (719)
Q Consensus 4 ~~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~ 83 (719)
+..+++.++++..+ +||++.|++|+++|++++++|+.|.++..++..... .+.++|++|+..||+.|+++|..+++
T Consensus 10 ~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~---~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 10 QGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKS---EDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred hhHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHHccCCCCH
Confidence 45778888888877 679999999999999999999999999999985222 36799999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccc
Q 005008 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (719)
Q Consensus 84 ~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~ 161 (719)
+.+..+|+.+++.+. ..++.||++++.+++.++.+.+ .||+.++.++..+++. ++...+..+..|..+.|+..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhH
Confidence 999999999999864 4567899999999999998754 6999999999999763 34456778888888887763
Q ss_pred cccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccc
Q 005008 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (719)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ 241 (719)
.. + .+ +.+....+.++..+.+.+.. +...++..+++|+..++... +..
T Consensus 161 ~~------~---~~----~~~~~~~~~il~~l~~~l~~--------~~~~vR~~A~~aL~~~~~~~-----~~~------ 208 (852)
T 4fdd_A 161 EI------L---DS----DVLDRPLNIMIPKFLQFFKH--------SSPKIRSHAVACVNQFIISR-----TQA------ 208 (852)
T ss_dssp TH------H---HH----CSSSSCHHHHHHHHTTTTTC--------SSHHHHHHHHHHHHTTTTTT-----CHH------
T ss_pred HH------h---ch----hhhcchHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcc-----cHH------
Confidence 11 0 00 00111234455555555543 23568888888887665421 100
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHh
Q 005008 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (719)
Q Consensus 242 ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~ 321 (719)
+. .....+++.+. ....++|.+.....++.+..+++.+...+..
T Consensus 209 ~~----------------------------~~~~~~l~~l~--------~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 209 LM----------------------------LHIDSFIENLF--------ALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HH----------------------------TSHHHHHHHHH--------HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HH----------------------------HHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 00 00111111111 1234566777788888898888888777654
Q ss_pred CChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCC
Q 005008 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF 401 (719)
Q Consensus 322 ~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~ 401 (719)
+...+++.++.+...+ |.++...+++||..+.+.. ......+|++.++++.++.++.|++++.
T Consensus 253 ---~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 253 ---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ---GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTST------------THHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ---HHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcch------------hHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 4567888999998875 6789999999999987631 1233467889999999999998875311
Q ss_pred ----CC-CCCCCCCchH--HHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccC
Q 005008 402 ----ND-DGMVDLPDGL--VQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (719)
Q Consensus 402 ----~~-~~~~d~~d~f--~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~ 474 (719)
.| ++|++++|.+ ...|+..++++..+....|.. ++..++..+... ..+.+|+.+++++++++++++++.+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~-l~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKEL-LFHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcchHH
Confidence 01 0111111211 234777788888888877753 444444432211 02357999999999999999988643
Q ss_pred CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--CccchHHHHHHHHHhcCc--CchHHHHHHH
Q 005008 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE--AVSSNACASA 550 (719)
Q Consensus 475 ~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~--~p~~L~~vl~~l~~~l~~--~~v~~~Aa~a 550 (719)
-... ++.++..+....+++++ .+|.++ ++++|+|++|+.. +..++..+++.++.++.+ +.++..|+.|
T Consensus 394 ~~~~-l~~~l~~l~~~l~d~~~------~Vr~~a-~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 394 MIPY-LPELIPHLIQCLSDKKA------LVRSIT-CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp HGGG-HHHHHHHHHHHTTCSSH------HHHHHH-HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcCCCCH------HHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2222 56666666666677764 266654 7999999999976 457899999999999975 5699999999
Q ss_pred HHHHHHHhhcccCCCchHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 005008 551 LRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (719)
Q Consensus 551 l~~lc~~c~~~l~~p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (719)
|.++|+.|+..+. | +++.+ ..+...+... +.+....++++++.++..++..-....++..++.++++.++.+.+
T Consensus 466 L~~l~~~~~~~l~-~-~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d 540 (852)
T 4fdd_A 466 FATLEEEACTELV-P-YLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 540 (852)
T ss_dssp HHHHHHHHGGGGG-G-GHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHhhHhhH-h-HHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccc
Confidence 9999999998864 5 44444 4444444433 455667789999999987665433356889999999988766543
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=2e-27 Score=283.09 Aligned_cols=522 Identities=14% Similarity=0.111 Sum_probs=357.7
Q ss_pred chHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC--hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc--
Q 005008 3 MDLQIKVAQAVHVL-NHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-- 77 (719)
Q Consensus 3 ~~~~~~v~~av~~l-y~~~~~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~-- 77 (719)
||. .++.+++..+ + +||++.|++|+++|++++++ |+.|..+.+++.+.+ .+.++|+||+++|+++|+++
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSH
T ss_pred CCH-HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHhhccCcCh
Confidence 344 4699999998 7 78999999999999999986 999999999997643 25699999999999999876
Q ss_pred ---------cCC-CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c--cCCChHHHHHHHhhhccCCCc
Q 005008 78 ---------GYY-LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDN 144 (719)
Q Consensus 78 ---------~~~-l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~-~--~W~~~i~~li~~l~~~~~~~~ 144 (719)
|.. ++++.+..+|+.|++.+. ..++.+|++++.+++.++.+. + .||++++.++..+++.. ++.
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~ 150 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PEN 150 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHH
T ss_pred HHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-CHH
Confidence 465 999999999999999874 456789999999999999875 3 69999999999987631 344
Q ss_pred hhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHH
Q 005008 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (719)
Q Consensus 145 ~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi 224 (719)
.....+.+|..+++++... .. .+....+.++..+.+.+.... +...++..+++|+.+|+
T Consensus 151 ~r~~al~~l~~l~~~~~~~------~~---------~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQ------SQ---------ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTT------SS---------TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCChh------hh---------HHHHHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHH
Confidence 5678899999999987421 10 123456777887777776431 13578999999999998
Q ss_pred HcccccccCcchhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHH
Q 005008 225 RAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGL 304 (719)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l 304 (719)
.+... .+... .....+++.+++ ...+++.+.....
T Consensus 210 ~~~~~-~~~~~-~~~~~ll~~l~~-------------------------------------------~~~~~~~~~r~~a 244 (861)
T 2bpt_A 210 IFIKN-NMERE-GERNYLMQVVCE-------------------------------------------ATQAEDIEVQAAA 244 (861)
T ss_dssp GGCHH-HHTSH-HHHHHHHHHHHH-------------------------------------------HHTCSCHHHHHHH
T ss_pred HHHHH-HccCh-hHHHHHHHHHHH-------------------------------------------HhcCCCHHHHHHH
Confidence 75310 00000 000011111111 2234445555556
Q ss_pred HHHHHHHHHhchHHHHhCChhHH-HHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhh--hhhh-hHHhhH
Q 005008 305 ACLMSEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK--NKKH-VEDMFF 380 (719)
Q Consensus 305 ~~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~--~~~~-~~~~~~ 380 (719)
++.+..+++.+...+.. ++. .++++++.....+ +.++...+++||..+.+........... ..+. .....+
T Consensus 245 ~~~l~~l~~~~~~~~~~---~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 66666666655443321 233 5666666666664 6789999999999988754211100000 0000 112356
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHH
Q 005008 381 SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETK 460 (719)
Q Consensus 381 ~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~ 460 (719)
+++..+++.++.++..++++ + +++++ ..|+...+++..++..+|.. .+..++..+... ..+.+|+.+|++
T Consensus 320 ~~~~~il~~ll~~l~~~~~d---~----~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~-l~~~~~~~r~~a 389 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNED---P----EDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQN-ITADNWRNREAA 389 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC--------CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc---c----ccccC-cHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHH-cCCCChhHHHHH
Confidence 78889999999998876431 1 11222 56778888898888877743 344444332211 124579999999
Q ss_pred HHHHHHhhhhcccC-CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC---ccchHHHHHHHHH
Q 005008 461 LFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAA 536 (719)
Q Consensus 461 L~~l~~i~e~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~---p~~L~~vl~~l~~ 536 (719)
+++++++++++..+ -... ++.++..+.....++++ .+|.+ +++++|+|++++..+ +++++.+++.++.
T Consensus 390 ~~~l~~i~~~~~~~~~~~~-l~~il~~l~~~l~d~~~------~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSL------QVKET-TAWCIGRIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCH------HHHHH-HHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHcCCCcH------HHHHH-HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 99999999876421 1111 34455544444555654 25665 479999999999764 5789999999999
Q ss_pred hcCc-CchHHHHHHHHHHHHHHhh----cccCCCchHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHH
Q 005008 537 GISE-AVSSNACASALRKICEDAS----ALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNN 610 (719)
Q Consensus 537 ~l~~-~~v~~~Aa~al~~lc~~c~----~~l~~p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 610 (719)
++.+ ++++..|+.++..+|+.|+ ..+ .| +.+.+ ..+...+.....+...|..++++++.++...+.+ . ..
T Consensus 462 ~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l-~~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~-~~ 537 (861)
T 2bpt_A 462 GLQDHPKVATNCSWTIINLVEQLAEATPSPI-YN-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-V-AE 537 (861)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHSSSSSCGG-GG-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-G-HH
T ss_pred HhccChHHHHHHHHHHHHHHHhcccccchhh-HH-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-h-HH
Confidence 9987 5689999999999999987 333 34 44444 3444444332223567889999999999998875 3 57
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005008 611 LLARLLSSSYEAIGKLI 627 (719)
Q Consensus 611 ~l~~l~~p~~~~l~~~~ 627 (719)
++..++.+++..|.+.+
T Consensus 538 ~~~~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 538 TSASISTFVMDKLGQTM 554 (861)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999998764
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.95 E-value=1.5e-24 Score=258.89 Aligned_cols=514 Identities=13% Similarity=0.077 Sum_probs=348.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhh-----------
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~----------- 75 (719)
+.+++..++ ++|++.|++|+++|++++++ ++.|..+.++|.+++ .+..+|.+|+.+|++++.
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 778888876 78999999999999999987 899999999997643 246999999999999985
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc---cCCChHHHHHHHhhhccCCCchhHHHHHH
Q 005008 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (719)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~---~W~~~i~~li~~l~~~~~~~~~~~~~L~~ 152 (719)
+.|..++++.+..+|+.+++.+.. .+..+ ++++.+++.++.+.. .||+.++.++..+++...++......++.
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 458999999999999999998743 33456 999999999987752 69999999999987531023456788899
Q ss_pred HhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 005008 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (719)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (719)
|..+++++.. +.+....+.++..+.+.+.... +...++..+++|+..|+.+.
T Consensus 154 l~~l~~~~~~-----------------~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (876)
T 1qgr_A 154 IGYICQDIDP-----------------EQLQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (876)
T ss_dssp HHHHHHHSCH-----------------HHHGGGHHHHHHHHHHHHSTTC------SCHHHHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHhcCH-----------------hhHHhHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9988887521 1144567888888888776531 12468899999999998752
Q ss_pred Ccchh---cccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHH
Q 005008 233 SQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (719)
Q Consensus 233 ~~~~~---~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~ 309 (719)
+.... ....+++.+++ ...++|.+.....++.+.
T Consensus 206 ~~~~~~~~~~~~il~~l~~-------------------------------------------~~~~~~~~vr~~a~~~l~ 242 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCE-------------------------------------------ATQCPDTRVRVAALQNLV 242 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHH-------------------------------------------HTTCSSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH-------------------------------------------HcCCCCHHHHHHHHHHHH
Confidence 11100 00001111111 223444555556667777
Q ss_pred HHHHhchHHHHhCChhHH-HHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccc--hhhh-hhh----hhhHHhhHH
Q 005008 310 EIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD--ASIA-KNK----KHVEDMFFS 381 (719)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~--~~~~-~~~----~~~~~~~~~ 381 (719)
.+++.+...+.. ++. .+++.++.+...+ +.++...+++||..+.+...... .+.. .+. .......++
T Consensus 243 ~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 243 KIMSLYYQYMET---YMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHSGGGCHH---HHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHhHHHHHH---HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 766666544332 233 5677777776664 67899999999999987532110 0000 000 011234466
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHH
Q 005008 382 VFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKL 461 (719)
Q Consensus 382 ~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L 461 (719)
++.++++.++..+...+++ + | ++++ ..|+...+++..+....|.. ++..++..+... ..+.+|+.+++++
T Consensus 318 ~~~~ll~~ll~~l~~~~~d---~---~-~~~~-~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~-l~~~~~~~r~~a~ 387 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDEN---D---D-DDDW-NPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEH-IKNPDWRYRDAAV 387 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSS---C---C-TTCC-CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHHH
T ss_pred HHHHHhHHHHHHhhccccc---c---c-cccc-HHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHH-ccCCChHHHHHHH
Confidence 7788899888888643221 0 1 1122 56777888888887777743 444444433211 1345799999999
Q ss_pred HHHHHhhhhcccC-CcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---CccchHHHHHHHHHh
Q 005008 462 FALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAG 537 (719)
Q Consensus 462 ~~l~~i~e~~~~~-~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~---~p~~L~~vl~~l~~~ 537 (719)
++++.+++++.++ -... ++.++..+.....++++ .+|.+ +++++|+|++++.. ++.+++.+++.++..
T Consensus 388 ~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~------~vr~~-a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSV------VVRDT-AAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSH------HHHHH-HHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCH------HHHHH-HHHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 9999999877522 1111 34455544444455554 25665 47999999999876 567999999999999
Q ss_pred cCc-CchHHHHHHHHHHHHHHhh--------------cccCCCchHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHcc
Q 005008 538 ISE-AVSSNACASALRKICEDAS--------------ALIDEPSNLEILMWIGEALEKRHL-PLEDEEEVVGAISLILGS 601 (719)
Q Consensus 538 l~~-~~v~~~Aa~al~~lc~~c~--------------~~l~~p~~~~~l~~~~~~l~~~~l-~~~~~~~l~eai~~vi~~ 601 (719)
+.+ +.++..|+.+|..+++.|+ ..+ .|++.+++-.+...+..... ....+..++++++.++..
T Consensus 460 l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL-SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS-TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhh-hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 987 4689999999999999987 123 35433333344444332211 234577899999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhc
Q 005008 602 VSNKELKNNLLARLLSSSYEAIGKLID 628 (719)
Q Consensus 602 ~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (719)
.+.+ . ..++..++.+++..+...+.
T Consensus 539 ~~~~-~-~~~~~~l~~~l~~~l~~~~~ 563 (876)
T 1qgr_A 539 SAKD-C-YPAVQKTTLVIMERLQQVLQ 563 (876)
T ss_dssp CCST-T-HHHHHHHHHHHHHHHHHHHT
T ss_pred Cchh-h-HHHHHHHHHHHHHHHHHHHH
Confidence 9875 3 57899999999999988753
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=1.7e-23 Score=230.51 Aligned_cols=431 Identities=13% Similarity=0.076 Sum_probs=298.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc--ChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc---------
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ--TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE--------- 77 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~--s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~--------- 77 (719)
+.+++..++ +||++.|++|+++|+++++ .|+.|....++|.+.+ .+.++|.+|+.+|+++++++
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 778888877 7899999999999999998 4899999999998653 25699999999999999876
Q ss_pred --cCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c--cCCChHHHHHHHhhhccCCCchhHHHHHH
Q 005008 78 --GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (719)
Q Consensus 78 --~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~-~--~W~~~i~~li~~l~~~~~~~~~~~~~L~~ 152 (719)
|..++++.+..+|+.|++.+.. .++.+ ++++.+++.++.+. + .||+.++.++..+++...++......+.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5889999999999999998753 34557 99999999999875 3 69999999999997631034467889999
Q ss_pred HhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 005008 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (719)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (719)
|..+++++.. . . +....+.++..+.+++.... +...++..+++|+.+|+.+.
T Consensus 154 l~~l~~~~~~-~-----~-----------~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (462)
T 1ibr_B 154 IGYICQDIDP-E-----Q-----------LQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (462)
T ss_dssp HHHHHHHSCG-G-----G-----------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHhCCc-h-----h-----------hHhHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9999998631 0 0 22345678888888886531 13578999999999998642
Q ss_pred CcchhcccchHHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHH
Q 005008 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (719)
Q Consensus 233 ~~~~~~~~~ll~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~ 312 (719)
.. ... +.. +...+++.+ . ....+.|.+.....++.+..++
T Consensus 206 ~~-~~~--------------~~~-----------------~~~~l~~~l---~-----~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 206 KA-NFD--------------KES-----------------ERHFIMQVV---C-----EATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp HH-HHT--------------SHH-----------------HHHHHHHHH---H-----HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HH-hhh--------------hhH-----------------HHHHHHHHH---H-----HhcCCCCHHHHHHHHHHHHHHH
Confidence 10 000 000 000011110 1 1234566777788899999998
Q ss_pred HhchHHHHhCChhHH-HHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhh----hhh---hhhHHhhHHHHH
Q 005008 313 QAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA----KNK---KHVEDMFFSVFS 384 (719)
Q Consensus 313 e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~----~~~---~~~~~~~~~~~~ 384 (719)
+.+...+... +. .+++.++.+.... +.++...+++||..+.+.......... ... ......+++++.
T Consensus 246 ~~~~~~~~~~---~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 246 SLYYQYMETY---MGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHCGGGCTTT---TTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 8887655432 23 5666777776664 678999999999999875321100000 000 022334577888
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHH
Q 005008 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (719)
Q Consensus 385 ~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l 464 (719)
.+++.+++.+.-.+++ .+ |+-...|+..++++..++..+|. .++..++..+... ..+.+|+.++++++++
T Consensus 321 ~l~p~l~~~l~~~d~d---~~-----~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~-l~~~~~~~r~aal~~l 390 (462)
T 1ibr_B 321 YLVPILTQTLTKQDEN---DD-----DDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEH-IKNPDWRYRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHTTCCCSS---CC-----TTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred hccHHHHHHHHhcccc---cc-----cccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH-hcCCChHHHHHHHHHH
Confidence 8999888877533211 01 11124588888999999998884 3555555443221 1346799999999999
Q ss_pred HHhhhhcccCC-cccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---CccchHHHHHHHHHhcC
Q 005008 465 NVVSEVVLQEG-QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGIS 539 (719)
Q Consensus 465 ~~i~e~~~~~~-~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~---~p~~L~~vl~~l~~~l~ 539 (719)
+++++++..+. ... ++.++..+.....++++. +|.++ ++++|+|++|+.. ++.+++++++.++.+|.
T Consensus 391 ~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~------Vr~~a-~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 391 GCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVV------VRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999876321 112 466777666666666642 66664 7999999999987 46899999999998774
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.46 E-value=1.5e-10 Score=142.78 Aligned_cols=590 Identities=11% Similarity=0.123 Sum_probs=324.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCh----------HHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhh
Q 005008 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD----------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ 75 (719)
Q Consensus 6 ~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~----------~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~ 75 (719)
..++.+.+..+- ++|+..|.+|.+.|.+.-+.+ ..-......|.+ .+.++|..|+..|.....
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHH
Confidence 355788888875 789999999988888764432 222334444442 245999999999988765
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-c----------CCChHHHHHHHhhhccCCCc
Q 005008 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-E----------HGKPIEKLFYSLQNLQSQDN 144 (719)
Q Consensus 76 ~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~-~----------W~~~i~~li~~l~~~~~~~~ 144 (719)
. ++++....++..|+..+. ..+..||...+.+|+.++-... . |+..++.++..+... .++.
T Consensus 78 ~----~~~~~~~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~ 149 (1230)
T 1u6g_C 78 K----VKEYQVETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVS 149 (1230)
T ss_dssp T----SCHHHHHHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHH
T ss_pred h----CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchH
Confidence 3 566677777777776653 3455788888999998876554 2 888899898888631 1334
Q ss_pred hhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHH
Q 005008 145 GNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (719)
Q Consensus 145 ~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi 224 (719)
.....+++|..+++..+.. +. ...+.++..+...+... ...++..+++|+.+.+
T Consensus 150 ~~~~al~~l~~~~~~~~~~------l~------------~~~~~ll~~l~~~L~~~--------~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGL------LV------------NFHPSILTCLLPQLTSP--------RLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSS------CT------------TTHHHHHHHHGGGGGCS--------SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHhH------HH------------HHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHHH
Confidence 5677788888877765421 22 12355666666666542 2468999999999887
Q ss_pred HcccccccCcchhcccchHHHHHHhcCC---CChHHHHHHHHHHHhhcCCC----hhHHHHHhhhhhHHHchhhhhhcCc
Q 005008 225 RAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEG----LPQALLCRVPFLKELLLLPALTDGD 297 (719)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ll~~~~~~l~~---~~~~~~a~~~l~eil~~~~~----~~~~l~~~~~~l~~~~~~~a~~~~d 297 (719)
... +... ...+++.+++.|.+ +..+..+++++..+.....+ +...+++.++. .+.++|
T Consensus 204 ~~~-----~~~~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~--------~l~d~~ 268 (1230)
T 1u6g_C 204 MSC-----GNIV--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK--------FCNVDD 268 (1230)
T ss_dssp TTC-----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHH--------HHSSCC
T ss_pred Hhc-----CHHH--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HhcCCC
Confidence 642 2222 23456666666542 35677789999888764332 22233332221 333445
Q ss_pred hhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHH-HH-----HH------Hhccc
Q 005008 298 EKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWST-LA-----SY------ILGLD 365 (719)
Q Consensus 298 ~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~-l~-----e~------l~~~~ 365 (719)
.+........+..+++.+...+. +....++..++....+.. ++...+ - +=|.. +. +. .+..+
T Consensus 269 ~~vR~~a~~~l~~l~~~~~~~~~---~~l~~li~~ll~~l~~d~-~~~~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRRCPKEVY---PHVSTIINICLKYLTYDP-NYNYDD-E-DEDENAMDADGGDDDDQGSDDEYSDD 342 (1230)
T ss_dssp TTTHHHHHHHHHHHHHCTTCCCH---HHHHHHHHHHTTCCCCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHChHHHH---HhHHHHHHHHHHHhCCCC-CCCCcc-c-ccccccccccccccchhhcccccccc
Confidence 54444444455444443221110 234566777777665310 110000 0 00000 00 00 00000
Q ss_pred hhh-hhhhh-----------hhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCc
Q 005008 366 ASI-AKNKK-----------HVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS 433 (719)
Q Consensus 366 ~~~-~~~~~-----------~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~ 433 (719)
++. .+-+. .....+.|++.++++.++..+. | . + ...|..+...+..++..+|.
T Consensus 343 ~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~---d---------~-~--~~Vr~~a~~~l~~l~~~~~~ 407 (1230)
T 1u6g_C 343 DDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK---E---------R-E--ENVKADVFHAYLSLLKQTRP 407 (1230)
T ss_dssp --CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS---C---------S-S--SHHHHHHHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC---C---------C-c--hHHHHHHHHHHHHHHHHhcc
Confidence 000 00000 0011345666666665543321 1 0 1 23566666666655554432
Q ss_pred -----------------h----HHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhcc
Q 005008 434 -----------------A----TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA 492 (719)
Q Consensus 434 -----------------~----~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~ 492 (719)
. .++..++..+... ....+|+.+++++.+++.+.+.++..-..+ ++.++..+.....
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~-l~~ll~~l~~~L~ 485 (1230)
T 1u6g_C 408 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ-MKEKSVKTRQCCFNMLTELVNVLPGALTQH-IPVLVPGIIFSLN 485 (1230)
T ss_dssp C------------CCCHHHHHHHHTTHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHTT
T ss_pred ccccccCccccccccchHHHHHHHhhHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHchhhhHHH-HHHHHHHHHHHHc
Confidence 1 1233333332111 134679999999999999998765322222 4566665555444
Q ss_pred CchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-cc----chHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhc-----
Q 005008 493 SRSEELKGFMHIVYRSLADVIGSYSKWISAF-QT----NARPLLLFLAAGISEAV--SSNACASALRKICEDASA----- 560 (719)
Q Consensus 493 ~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~----~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~----- 560 (719)
++.+. . .++ .+.++.+..++..+ |+ |++.+++.++..+.++. ++..|..++..+++.++.
T Consensus 486 d~~~~-~---~v~----~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~ 557 (1230)
T 1u6g_C 486 DKSSS-S---NLK----IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS 557 (1230)
T ss_dssp CSSSC-H---HHH----HHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCCc-c---hHH----HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccc
Confidence 44320 0 133 35566666676643 44 67788888888888754 667788888888887765
Q ss_pred --ccCCCchHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 005008 561 --LIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIH 637 (719)
Q Consensus 561 --~l~~p~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~ 637 (719)
.+ .| +.+.++. +...+....-+.+.|...++++|.++...+..- ..++..+++.+.. .+....
T Consensus 558 ~~~~-~~-~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~--~~~~~~~l~~L~~----~l~~e~------ 623 (1230)
T 1u6g_C 558 SFDA-TP-YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL--GSDLPNTLQIFLE----RLKNEI------ 623 (1230)
T ss_dssp CCCC-HH-HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC--CTHHHHHHHHHHH----HTTSSS------
T ss_pred ccch-HH-HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchh--hhhHHHHHHHHHH----Hhccch------
Confidence 22 12 4444433 333332233355689999999999998876542 2334444443333 322210
Q ss_pred CchhHHHHHHHHHHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhc
Q 005008 638 NPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717 (719)
Q Consensus 638 ~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~ 717 (719)
.. ..+++.+. .+..... +...-.++..+.|.+...+. ..+..+-+.++.++.++++..
T Consensus 624 --~r-----~~~~~al~---~i~~~~~---------~~~~~~~~~~i~~~L~~~l~---~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 624 --TR-----LTTVKALT---LIAGSPL---------KIDLRPVLGEGVPILASFLR---KNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp --HH-----HHHHHHHH---HHTTCSS---------CCCCHHHHHHHHHHHHHHTT---SCCHHHHHHHHHHHHHHHHHC
T ss_pred --hH-----HHHHHHHH---HHHhCcc---------ccchHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHhcc
Confidence 11 11223333 2322111 01123667888887777664 256677888888888888776
Q ss_pred C
Q 005008 718 G 718 (719)
Q Consensus 718 g 718 (719)
|
T Consensus 682 ~ 682 (1230)
T 1u6g_C 682 S 682 (1230)
T ss_dssp C
T ss_pred c
Confidence 5
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.23 E-value=2.7e-08 Score=122.62 Aligned_cols=552 Identities=12% Similarity=0.070 Sum_probs=309.1
Q ss_pred chhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHh
Q 005008 59 DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSL 136 (719)
Q Consensus 59 ~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~--~W~~~i~~li~~l 136 (719)
+..+|+.|...|.+-++.+...+++.....+...|++.+. ..+..+|+.-+.+|+.++-... .++..++.++..+
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l 95 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNM 95 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4589999999999988887767776666666666766653 4557788888888888876544 3555666666666
Q ss_pred hhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHH
Q 005008 137 QNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKI 216 (719)
Q Consensus 137 ~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~ 216 (719)
... ++.........|+.+.+.+..... ... ......+.++..+...+... +...++..+
T Consensus 96 ~d~--~~~vR~~a~~~L~~i~~~l~~~~~-----~~~-------~~~~~~~~llp~L~~~l~~~-------~~~~~~~~a 154 (1230)
T 1u6g_C 96 LSD--KEQLRDISSIGLKTVIGELPPASS-----GSA-------LAANVCKKITGRLTSAIAKQ-------EDVSVQLEA 154 (1230)
T ss_dssp TCS--SSHHHHHHHHHHHHHHHHCC----------CC-------THHHHHHHHHHHHHHHHSCC-------SCHHHHHHH
T ss_pred cCC--cHHHHHHHHHHHHHHHHhCCCccc-----ccc-------hHHHHHHHHHHHHHHHHcCC-------CchHHHHHH
Confidence 442 233345667777777776642100 000 01123566777777776531 124677888
Q ss_pred HHHHHHHHHcccccccCcch-hcccchHHHHHHhcCCCC--hHHHHHHHHHHHhhcCC-ChhHHHHHhhhhhHHHchhhh
Q 005008 217 LRCLLSWVRAGCFTEISQGS-LAAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELLLLPA 292 (719)
Q Consensus 217 l~c~~sWi~~~~~~~~~~~~-~~~~~ll~~~~~~l~~~~--~~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~~~~~~a 292 (719)
+.++..-+... +... .....+++.++..+.+++ ++..|+.++..++.... .+...+++.++. .+.
T Consensus 155 l~~l~~~~~~~-----~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~---~L~--- 223 (1230)
T 1u6g_C 155 LDIMADMLSRQ-----GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS---ELS--- 223 (1230)
T ss_dssp HHHHHHHHHHT-----CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHH---HHH---
T ss_pred HHHHHHHHHHh-----HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---Hhc---
Confidence 88887766531 1111 123567888888888764 68889999998887543 222223333222 111
Q ss_pred hhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhh
Q 005008 293 LTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNK 372 (719)
Q Consensus 293 ~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~ 372 (719)
...+.+.....+..+..+++.....+.. +...+++.++..+..+ +.++.+.++..|..+.+..
T Consensus 224 -~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~----------- 286 (1230)
T 1u6g_C 224 -KNDSMSTTRTYIQCIAAISRQAGHRIGE---YLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRC----------- 286 (1230)
T ss_dssp -HTCSSCSCTTHHHHHHHHHHHSSGGGTT---SCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCT-----------
T ss_pred -cCCchhHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHC-----------
Confidence 1111223345567777776655443322 3456778888887764 5678888888777776632
Q ss_pred hhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHH--HHHHHHHhhcCCCC
Q 005008 373 KHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANV 450 (719)
Q Consensus 373 ~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~--l~~~~~~~~~~~~~ 450 (719)
.+.+.|++.++++.+++.+.++++...+ .+.++.+++.+. + +.+.. ....+. ...
T Consensus 287 ---~~~~~~~l~~li~~ll~~l~~d~~~~~~-~d~~~~~~~~~~----~----------~~~~~~~~~~~~~-----~~~ 343 (1230)
T 1u6g_C 287 ---PKEVYPHVSTIINICLKYLTYDPNYNYD-DEDEDENAMDAD----G----------GDDDDQGSDDEYS-----DDD 343 (1230)
T ss_dssp ---TCCCHHHHHHHHHHHTTCCCCC-------------------------------------------------------
T ss_pred ---hHHHHHhHHHHHHHHHHHhCCCCCCCCc-cccccccccccc----c----------cccchhhcccccc-----ccc
Confidence 1235788999999999999886542100 000000111100 0 00000 000000 012
Q ss_pred CCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--------
Q 005008 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-------- 522 (719)
Q Consensus 451 ~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~-------- 522 (719)
...|.-+++++-++..++...++.-... ++.++..+.....+++.. +|..+ +.+++....-+..
T Consensus 344 d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~~~~~~~~ 415 (1230)
T 1u6g_C 344 DMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREEN------VKADV-FHAYLSLLKQTRPVQSWLCDP 415 (1230)
T ss_dssp -CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSH------HHHHH-HHHHHHHHHHHCCC-------
T ss_pred ccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCCchH------HHHHH-HHHHHHHHHHhccccccccCc
Confidence 3569989999999999987443110101 222333322222333321 44332 3555444332210
Q ss_pred ------------CccchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhh
Q 005008 523 ------------FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLED 587 (719)
Q Consensus 523 ------------~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~ 587 (719)
-..+++.+++.+.+.+.++. ++..++.++..++..|+..+. + +++.++ .+...+.........
T Consensus 416 ~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~-~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 416 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-Q-HIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp -----CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-G-GHHHHHHHHHHHTTCSSSCHHH
T ss_pred cccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-H-HHHHHHHHHHHHHcCCCCcchH
Confidence 02467788888888888754 788899999999999887663 4 554444 444444322112456
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCC
Q 005008 588 EEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (719)
Q Consensus 588 ~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~ 667 (719)
+......++.++...+++.. ..++..++..++..+ ... ++... ..+ +..++.+.+.+....
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~-~~~l~~llp~L~~~l----~d~-------~~~v~----~~a---l~~l~~l~~~~~~~~ 554 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVF-HPHVQALVPPVVACV----GDP-------FYKIT----SEA---LLVTQQLVKVIRPLD 554 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGG-HHHHTTTHHHHHHHH----TCS-------SHHHH----HHH---HHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHhCCHHHH-HhHHHHHHHHHHHHH----ccc-------chHHH----HHH---HHHHHHHHHHhcCcc
Confidence 88888888888887776644 567777777776543 211 11000 112 333334433332211
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhcC
Q 005008 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (719)
Q Consensus 668 ~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~~g 718 (719)
........+++..+.|.+-..+. ....+.++-+.+..++...+...|
T Consensus 555 ---~~~~~~~~~~~~~ll~~ll~~l~-~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 555 ---QPSSFDATPYIKDLFTCTIKRLK-AADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp ---SCCCCCCHHHHHHHHHHHHHHHS-CSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred ---cccccchHHHHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhC
Confidence 11123356778888888777775 245667777888888888877765
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.02 E-value=3.2e-06 Score=95.21 Aligned_cols=508 Identities=11% Similarity=0.006 Sum_probs=274.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--C-hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCC
Q 005008 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQ--T-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (719)
Q Consensus 5 ~~~~v~~av~~ly~~~~~~~~~~A~~~L~~fq~--s-~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l 81 (719)
....+..++..+- ++|+..|..|-+-|..+-. . ...|.-....|..... .+.++|..++..|..-... +
T Consensus 8 ~~~~i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d---~~~~vr~~~~~~L~~~~~~----~ 79 (588)
T 1b3u_A 8 SLYPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIY---DEDEVLLALAEQLGTFTTL----V 79 (588)
T ss_dssp SSHHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCC---CCHHHHHHHHHHHTTCSGG----G
T ss_pred CcCcHHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHhc----c
Confidence 3556888888875 7888999999888876532 2 3456645445532211 2458999999888732221 1
Q ss_pred ChhhHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc---CCChHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 005008 82 QSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (719)
Q Consensus 82 ~~~~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~~---W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~ 157 (719)
.... ....++..+.... .....||.+.+.+|..++-..+. |+..++-+....++. +.........++..+.
T Consensus 80 ~~~~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 80 GGPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCY 154 (588)
T ss_dssp TSGG---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHT
T ss_pred CcHH---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHH
Confidence 1111 1122333333322 34578999999999988865541 333334333333221 2223344555555544
Q ss_pred hccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchh
Q 005008 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (719)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~ 237 (719)
+.+ +... .+.++.++.+.+.. ++..++..+++++..+.... +.+ .
T Consensus 155 ~~~----------~~~~-----------~~~l~~~l~~l~~d--------~~~~VR~~a~~~l~~l~~~~-----~~~-~ 199 (588)
T 1b3u_A 155 PRV----------SSAV-----------KAELRQYFRNLCSD--------DTPMVRRAAASKLGEFAKVL-----ELD-N 199 (588)
T ss_dssp TTS----------CHHH-----------HHHHHHHHHHHHTC--------SCHHHHHHHHHHHHHHHHTS-----CHH-H
T ss_pred Hhc----------CHHH-----------HHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHh-----cHH-h
Confidence 432 2111 23455555555543 23578999999999888742 222 1
Q ss_pred cccchHHHHHHhcCCCC--hHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhc
Q 005008 238 AAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAA 315 (719)
Q Consensus 238 ~~~~ll~~~~~~l~~~~--~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~ 315 (719)
....+++.+...+.+++ .+..|++++..+.....+ +...+.++.+.. ....+++.......++.+..+++..
T Consensus 200 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~----~~~~d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLR----QAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHH----HHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH----HHccCCCHHHHHHHHHHHHHHHHHh
Confidence 23467788888887654 577889998887764331 111122221111 1234555555566666666665543
Q ss_pred hHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhcc------------------chhhhhhhh---h
Q 005008 316 PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGL------------------DASIAKNKK---H 374 (719)
Q Consensus 316 ~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~------------------~~~~~~~~~---~ 374 (719)
.+.. ....+++.++.++..+ +.++...+...+..+.+.+... .+....-+. .
T Consensus 274 ~~~~-----~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~ 346 (588)
T 1b3u_A 274 GPEI-----TKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 346 (588)
T ss_dssp CHHH-----HHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHT
T ss_pred Cccc-----chhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1111 1123455566665554 4566666655555554432100 000000000 0
Q ss_pred hHHhhH------HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCC
Q 005008 375 VEDMFF------SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSA 448 (719)
Q Consensus 375 ~~~~~~------~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~ 448 (719)
....+. .....+++.+...+. | + + .+.|..+...+..+...+|.+.....++..+...
T Consensus 347 ~l~~l~~~~~~~~~~~~l~p~l~~~l~---d---------~-~--~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~- 410 (588)
T 1b3u_A 347 VIMGLSPILGKDNTIEHLLPLFLAQLK---D---------E-C--PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL- 410 (588)
T ss_dssp TGGGGHHHHCHHHHHHHTHHHHHHHHT---C---------S-C--HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhC---C---------C-c--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Confidence 000000 112233333333332 0 0 0 2345555555555555566543223333222110
Q ss_pred CCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchH
Q 005008 449 NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR 528 (719)
Q Consensus 449 ~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~ 528 (719)
....+|+-+.+++-+++.+++.+..+. + .+.++..+.....++.. .+|..+ +..+|....-+..+ .++.
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~------~Vr~~a-~~~l~~l~~~~~~~-~~~~ 479 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEF--F-DEKLNSLCMAWLVDHVY------AIREAA-TSNLKKLVEKFGKE-WAHA 479 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGG--C-CHHHHHHHHHGGGCSSH------HHHHHH-HHHHHHHHHHHCHH-HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHH--H-HHHHHHHHHHHhcCCcH------HHHHHH-HHHHHHHHHHhCch-hHHH
Confidence 034679999999999999998776432 1 35666666555555543 256554 68888888766432 2466
Q ss_pred HHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 005008 529 PLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (719)
Q Consensus 529 ~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (719)
.+++.+...+.++ .++..|+.++..+++.|+... +.+.++.....+.. .-..+.|..++.+++.+...++.+
T Consensus 480 ~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGG-CSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCC-CCCchHHHHHHHHHHHHHHHhchh
Confidence 7777777777665 478999999999999887642 33332222211111 224678999999999999888654
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.01 E-value=2.3e-07 Score=104.57 Aligned_cols=479 Identities=13% Similarity=0.044 Sum_probs=268.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-h--HHHHH----HHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCC
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT-D--AAWEI----ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s-~--~aW~~----~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l 81 (719)
+..++..+..++++..|..|-+.|.++-.. + ..|.. ...+..++ +..+|..|+..+..-.. .+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~------~~~~R~~a~~~l~~~~~----~~ 157 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD------WFTSRTSACGLFSVCYP----RV 157 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCS------SHHHHHHHGGGHHHHTT----TS
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHH----hc
Confidence 444454555566778888998888887542 2 12333 33333322 34788888888876443 24
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhcc---CCChHHHHHHHhhhccCCCchhHHHHHHHhhhhh
Q 005008 82 QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (719)
Q Consensus 82 ~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~---W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~E 158 (719)
++..+..+...+...+ ...++.||...+.+++.++-.... ++..++.+...++.. +.......+..|..+.+
T Consensus 158 ~~~~~~~l~~~l~~l~---~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 158 SSAVKAELRQYFRNLC---SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp CHHHHHHHHHHHHHHH---TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence 5444444444333322 234578999999999988765431 355666666555432 22222344555555554
Q ss_pred ccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhc
Q 005008 159 EVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238 (719)
Q Consensus 159 E~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~ 238 (719)
.+. +.. ..+.++.++...+.. +...++..+.+++...... .+.+ ..
T Consensus 233 ~~~----------~~~----------~~~~~~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~-----~~~~-~~ 278 (588)
T 1b3u_A 233 LLP----------QED----------LEALVMPTLRQAAED--------KSWRVRYMVADKFTELQKA-----VGPE-IT 278 (588)
T ss_dssp HSC----------HHH----------HHHHTHHHHHHHHTC--------SSHHHHHHHHHTHHHHHHH-----HCHH-HH
T ss_pred hCC----------HHH----------HHHHHHHHHHHHccC--------CCHHHHHHHHHHHHHHHHH-----hCcc-cc
Confidence 332 111 123445555555432 2346788888888877653 1221 12
Q ss_pred ccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCCh-h-HHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHh
Q 005008 239 AHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGL-P-QALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (719)
Q Consensus 239 ~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~-~-~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~ 314 (719)
...+++.+.+.+.++ +++..|+.++..+......- . ...++.++. .+. ..+.+.+.......+..+..+++.
T Consensus 279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p---~l~-~~l~d~~~~vR~~a~~~l~~l~~~ 354 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP---CIK-ELVSDANQHVKSALASVIMGLSPI 354 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH---HHH-HHHTCSCHHHHHHHHTTGGGGHHH
T ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH---HHH-HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 345778888888765 46888999998887754321 0 011222211 111 133455555555555555444433
Q ss_pred chHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 005008 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (719)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~ 394 (719)
..... ....+++.++.+...+ +.+|...++..+..+.+.+ ..+ ... ..+++.+...+
T Consensus 355 ~~~~~-----~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~---~~~------~~~-------~~~lp~l~~~~ 411 (588)
T 1b3u_A 355 LGKDN-----TIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVI---GIR------QLS-------QSLLPAIVELA 411 (588)
T ss_dssp HCHHH-----HHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHS---CHH------HHH-------HHHHHHHHHHH
T ss_pred hhHhH-----HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhc---CHH------HHH-------HHHHHHHHHHh
Confidence 22111 1134556666666654 5678777777766665533 110 111 22233332222
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchH----HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhh
Q 005008 395 QVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT----FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEV 470 (719)
Q Consensus 395 ~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~----~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~ 470 (719)
.+ .. ...|....+.+..+...+|.+. ++..+...+ ...+|.-+++++.+++.+++.
T Consensus 412 ---~d---~~---------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-----~d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 412 ---ED---AK---------WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL-----VDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp ---TC---SS---------HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG-----GCSSHHHHHHHHHHHHHHHHH
T ss_pred ---cC---CC---------chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHHH
Confidence 11 01 2357777788888777777642 233333322 235688899999999999987
Q ss_pred cccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcC--chHHHHH
Q 005008 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACA 548 (719)
Q Consensus 471 ~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa 548 (719)
+..+. . ++.++..+..+..++.. .+|.++ +.++|.+++.+... .+++.+++.++..+.++ .|+..|+
T Consensus 472 ~~~~~--~-~~~llp~l~~~~~~~~~------~~R~~a-~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~ 540 (588)
T 1b3u_A 472 FGKEW--A-HATIIPKVLAMSGDPNY------LHRMTT-LFCINVLSEVCGQD-ITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HCHHH--H-HHHTHHHHHHTTTCSCH------HHHHHH-HHHHHHHHHHHHHH-HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred hCchh--H-HHHHHHHHHHHhhCCCH------HHHHHH-HHHHHHHHHhcCHH-HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence 75321 1 34455555455555543 255554 69999999887653 37788999999999874 5999999
Q ss_pred HHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005008 549 SALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (719)
Q Consensus 549 ~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (719)
.++..++...+... ..+.+......+.+ .-+.+.|....++++.+-
T Consensus 541 ~~l~~l~~~~~~~~----~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 541 KSLQKIGPILDNST----LQSEVKPILEKLTQ-DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHGGGSCHHH----HHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhchhh----hHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhh
Confidence 99999987554432 12333333333322 225567777777777653
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.95 E-value=1.6e-05 Score=94.02 Aligned_cols=511 Identities=13% Similarity=0.091 Sum_probs=271.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-Ch--------HHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc--
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ-TD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-- 77 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~-s~--------~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~-- 77 (719)
+...+..+.+++++..|+.|-+-|.++-+ .+ ....++..++... +.++|.-|+..+..-....
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~------~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ------DENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS------SHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC------cHHHHHHHHHHHHHHhcchhH
Confidence 33334343446778888888877776543 22 2355556666543 3478888877666543321
Q ss_pred cCCCChhhHHHHHHHHHHHHHH-------h-cC-----------CCHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhh
Q 005008 78 GYYLQSAAKDALLNALLVAAKR-------F-SS-----------GPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (719)
Q Consensus 78 ~~~l~~~~~~~Lr~~Ll~~l~~-------~-~~-----------~~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~ 138 (719)
|+.++ .....+-..++..+.. . .. ....+++.-+.+|..++...+ +..++.++..+..
T Consensus 290 ~~~~~-~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~~l~~~l~~ 366 (852)
T 4fdd_A 290 KDVLV-RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLPHILPLLKE 366 (852)
T ss_dssp HHHHT-TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 11111 1122233333333210 0 01 123466666677777765543 2344444444322
Q ss_pred c--cCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHH
Q 005008 139 L--QSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKI 216 (719)
Q Consensus 139 ~--~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~ 216 (719)
. +.+.......+..|..+.+-.. +.+....+.++..+...+... ...++..+
T Consensus 367 ~l~~~~~~~R~aa~~alg~i~~~~~------------------~~~~~~l~~~l~~l~~~l~d~--------~~~Vr~~a 420 (852)
T 4fdd_A 367 LLFHHEWVVKESGILVLGAIAEGCM------------------QGMIPYLPELIPHLIQCLSDK--------KALVRSIT 420 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHTTTTTH------------------HHHGGGHHHHHHHHHHHTTCS--------SHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcch------------------HHHHHHHHHHHHHHHHHcCCC--------CHHHHHHH
Confidence 1 1133455677777777766432 112334567777777777542 34677777
Q ss_pred HHHHHH---HHHcccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCC----ChhHHHHHhhhhhHHH
Q 005008 217 LRCLLS---WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE----GLPQALLCRVPFLKEL 287 (719)
Q Consensus 217 l~c~~s---Wi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~----~~~~~l~~~~~~l~~~ 287 (719)
..|+.. |+.-. . ......++++.+++.+.++ .++..|+.++..+..... ++...+++.+..+...
T Consensus 421 ~~~l~~l~~~~~~~-----~-~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 421 CWTLSRYAHWVVSQ-----P-PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHTHHHHHHS-----C-TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-----h-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH
Confidence 777654 44311 1 1112456888888888754 567888888888776432 2334444443332221
Q ss_pred chhhhhhcCchh-HHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhcc-CCCCCchhhhhhHHHHHHHHHHHhccc
Q 005008 288 LLLPALTDGDEK-VIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA-FPSEDWEIADSTLQFWSTLASYILGLD 365 (719)
Q Consensus 288 ~~~~a~~~~d~e-~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~-~p~~d~~v~~~~~~FW~~l~e~l~~~~ 365 (719)
+ ..+... ....+..+....|.... .++....+++.++.... ..+.+.++ ..+++-+..+...+.
T Consensus 495 ~-----~~~~~~~~~~ai~~l~~~~~~~~~-----~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g--- 560 (852)
T 4fdd_A 495 Y-----QHKNLLILYDAIGTLADSVGHHLN-----KPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQ--- 560 (852)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHHGGGGC-----CHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHG---
T ss_pred h-----ChHHHHHHHHHHHHHHHHhhhhhc-----cHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHh---
Confidence 1 011100 12233333333332210 11223344555553211 11113333 345566665555431
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHHHHHHhc--------c--CCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch-
Q 005008 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQ--------V--DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA- 434 (719)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~--------~--p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~- 434 (719)
..+.|++..+++.++..+. . .++.+ +. ++ .++|....+.+..++..+|..
T Consensus 561 -----------~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~-~~---~d----~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 561 -----------SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY-EA---PD----KDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp -----------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS-CC---CC----THHHHHHHHHHHHHHHHHGGGG
T ss_pred -----------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc-CC---Cc----chHHHHHHHHHHHHHHHHhHhH
Confidence 1233333333332222221 1 11111 00 11 236777778888887777754
Q ss_pred -HHH--HHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHH
Q 005008 435 -TFI--QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLAD 511 (719)
Q Consensus 435 -~~l--~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~ 511 (719)
.++ ..++..+... .......-++.+..+++.++..+..+-..+ ++.++..+....+...+ .++.. +++
T Consensus 622 ~~~~~~~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~~~lp~l~~~l~~~~~------~v~~~-a~~ 692 (852)
T 4fdd_A 622 EQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFI------SVCNN-ATW 692 (852)
T ss_dssp HHHHHTCCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHTCCTTSH------HHHHH-HHH
T ss_pred HHHhcCCcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCccch------HHHHH-HHH
Confidence 122 1222222111 123457788999999999998886543322 44455444333333222 25555 479
Q ss_pred HHHhhHHHHHhC-ccchHHHHHHHHHhcCcCc----hHHHHHHHHHHHHHHhhcccCCCchHHHHHH-HHHHHHhcCCCh
Q 005008 512 VIGSYSKWISAF-QTNARPLLLFLAAGISEAV----SSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPL 585 (719)
Q Consensus 512 ~ig~y~~~~~~~-p~~L~~vl~~l~~~l~~~~----v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~-~~~~l~~~~l~~ 585 (719)
.+|.++.-+... ..|+..+++.+++-+.+|+ +...|+.++.+++..|+..+. | +++.++. ....+.. .-+.
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~-~-~l~~~~~~~~~~l~~-~~d~ 769 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA-P-MLQQFIRPWCTSLRN-IRDN 769 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHG-G-GHHHHHHHHHHHHHT-SCSS
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhC-c-cHHHHHHHHHHHhcc-cccc
Confidence 999999888643 4588899999999888763 789999999999999987763 4 5665543 4455542 3356
Q ss_pred hhHHHHHHHHHHHHccCCch
Q 005008 586 EDEEEVVGAISLILGSVSNK 605 (719)
Q Consensus 586 ~~~~~l~eai~~vi~~~p~~ 605 (719)
+++...+.|++.++..-|..
T Consensus 770 ~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 770 EEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHhChHh
Confidence 68999999999999887764
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.94 E-value=7.4e-05 Score=88.37 Aligned_cols=632 Identities=11% Similarity=0.087 Sum_probs=320.9
Q ss_pred CHHHHHHHHHHHHHHhc----------ChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhh-HHHH
Q 005008 21 ESCNRVAANQWLVQFQQ----------TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA-KDAL 89 (719)
Q Consensus 21 ~~~~~~~A~~~L~~fq~----------s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~-~~~L 89 (719)
++..|..|-+.|..+-+ .+.-+......+..++ .+..+|.-|...|..-+.. ++... ....
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~----~~~~vr~~a~~~l~~~~~~----~~~~~~~~~~ 214 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE----PSNNVKLAATNALLNSLEF----TKANFDKESE 214 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTC----SCHHHHHHHHHHHHHHGGG----CHHHHTSHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHHHHHH----HHHHHHhHHH
Confidence 67777777776665532 1334555666665442 1358899999998876542 21110 1122
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhccC-----C-ChHHHHHHHhhhccCCCchhHHHHHHHhhhhhcccc
Q 005008 90 LNALLVAAKRFSS-GPPQLLTQICLALSALILRAVEH-----G-KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (719)
Q Consensus 90 r~~Ll~~l~~~~~-~~~~v~~kL~~ala~l~~~~~~W-----~-~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~ 162 (719)
++.+++.+..... ....++...+.+|..++-..+.. + ..++-++..+... +.......++++..+++...+
T Consensus 215 ~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHh
Confidence 3445555554332 34678888999998888654421 2 4444444444321 223345667777777654210
Q ss_pred c----------cccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 005008 163 S----------QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (719)
Q Consensus 163 ~----------~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (719)
. ...+ ... .. .......+.++..+.+.+....++. ..+...++..+..|+.......
T Consensus 293 ~~~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~ll~~ll~~l~~~~~d~-~~~~~~~r~~a~~~l~~l~~~~----- 359 (876)
T 1qgr_A 293 LAIEASEAAEQGRPP--EHT-SK----FYAKGALQYLVPILTQTLTKQDEND-DDDDWNPCKAAGVCLMLLATCC----- 359 (876)
T ss_dssp HHHHHHHHHHHSSCC--SSC-CC----CHHHHHHHHHHHHHHHHTTCCCSSC-CTTCCCHHHHHHHHHHHHHHHH-----
T ss_pred HhhhhccccccCCCc--cch-hH----HHHHHHHHHHhHHHHHHhhcccccc-cccccHHHHHHHHHHHHHHHHC-----
Confidence 0 0000 000 00 0011122444444444443321100 0012356778888888776532
Q ss_pred CcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCC-ChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHH
Q 005008 233 SQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (719)
Q Consensus 233 ~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~ 309 (719)
+.. ....+++.+.+.+.++ ..+++|+.++..+..... +.....++.+ .+.+. ..+.+.+.......+..+.
T Consensus 360 ~~~--~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~---l~~l~-~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 360 EDD--IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLI-ELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp GGG--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH---HHHHH-HHHTCSSHHHHHHHHHHHH
T ss_pred cHh--hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHH---HHHHH-HHhCCCCHHHHHHHHHHHH
Confidence 211 1345667777777655 467889999888776543 2222222222 22222 2445555566666677777
Q ss_pred HHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHH
Q 005008 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDA 389 (719)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~ 389 (719)
.+++.....+ ...+....+++.++..... +..+...+...-..+.+...+.+....+........+.|++..+++.
T Consensus 434 ~~~~~~~~~~-~~~~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~ 509 (876)
T 1qgr_A 434 RICELLPEAA-INDVYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQK 509 (876)
T ss_dssp HHHHHCGGGT-SSTTTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHH
T ss_pred HHHHhCchhc-ccHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHH
Confidence 7776654322 1223566778888887765 23455544444344444321000000000000112356788888888
Q ss_pred HHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch--HHHHHHHHH----hhc----CCC--CCCC---h
Q 005008 390 LLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFFG----SWG----SAN--VPIP---W 454 (719)
Q Consensus 390 l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~--~~l~~~~~~----~~~----~~~--~~~~---W 454 (719)
++..+.-+.. + . ...|..+-+++..+....|.+ .++..++.. +.. ... ...+ |
T Consensus 510 L~~~l~~~~~--------~-~---~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~ 577 (876)
T 1qgr_A 510 LLETTDRPDG--------H-Q---NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF 577 (876)
T ss_dssp HHHHTTSCSS--------C-S---TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHH
T ss_pred HHHHHhCcCc--------c-h---hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHH
Confidence 8887753321 0 0 224555667777777767653 123333222 111 000 1111 3
Q ss_pred hH-HHHHHHHHHHhhhhcc-cCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccchHHHH
Q 005008 455 KE-VETKLFALNVVSEVVL-QEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLL 531 (719)
Q Consensus 455 ~~-~Ea~L~~l~~i~e~~~-~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L~~vl 531 (719)
.+ .+.++.+++.+...+. .+-.++ ++.++..+..+...+... . .++.. ++.+++.++.-+..+ ..|++.++
T Consensus 578 ~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~-~---~v~~~-a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 578 NDLQSLLCATLQNVLRKVQHQDALQI-SDVVMASLLRMFQSTAGS-G---GVQED-ALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHTT-HHHHHHHHHHHC-----C-C---HHHHH-HHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhHH-HHHHHHHHHHHHHhccCC-C---CccHH-HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 43 3567778888877665 322222 455665544444333210 0 13333 468888888765543 35788888
Q ss_pred HHHHHhcCcC---chHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHH
Q 005008 532 LFLAAGISEA---VSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGSVSNKEL 607 (719)
Q Consensus 532 ~~l~~~l~~~---~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 607 (719)
+.++..+.++ .++..|..++..++..++..+. | +.+.++ .+...+.....+.+.+...+.++|.++...+.+ .
T Consensus 652 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~ 728 (876)
T 1qgr_A 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-P-FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-F 728 (876)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH-H-HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-G
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh-h-hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh-H
Confidence 8888888753 4888999999999999887653 3 444433 344444332235568899999999999877655 2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCch--hHHHHHHHHHHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHH
Q 005008 608 KNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPA--TYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (719)
Q Consensus 608 ~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~ 685 (719)
..++..++.++... ....... .++. .+...++.. .++.++.++..+........+......+++..++
T Consensus 729 -~~~l~~~~~~l~~~----~~~~~~~---~d~~~~~~~~~~r~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 798 (876)
T 1qgr_A 729 -KKYLEVVLNTLQQA----SQAQVDK---SDYDMVDYLNELRES--CLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFIL 798 (876)
T ss_dssp -GGGHHHHHHHHHHH----HTCCCCT---TCHHHHHHHHHHHHH--HHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHH
T ss_pred -HHHHHHHHHHHHHH----HhccCCC---CChHHHHHHHHHHHH--HHHHHHHHHHHHccCcccccchHHHHHHHHHHHH
Confidence 34566666655443 3222110 0110 111111111 1233344444433211000000111234566677
Q ss_pred HHHHHHHHhhhcc-ccHHHHHHHHHHHHHHHhcC
Q 005008 686 PMLEKLFRSEHME-NGNLSTAACRALSLAIQSSG 718 (719)
Q Consensus 686 p~l~~i~~~~~~~-~~~vie~~c~~~~~~~~~~g 718 (719)
+.+..+... .. +..|-..+..++...+..+|
T Consensus 799 ~~l~~~~~~--~~~~~~vr~~a~~~l~~l~~~~~ 830 (876)
T 1qgr_A 799 SFIDHIAGD--EDHTDGVVACAAGLIGDLCTAFG 830 (876)
T ss_dssp HHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhC
Confidence 777665532 22 45666667788877777665
No 19
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.89 E-value=0.0001 Score=87.06 Aligned_cols=388 Identities=13% Similarity=0.093 Sum_probs=216.4
Q ss_pred hhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchh--cccchHHHHHHhcCCCC--hHHHHHH
Q 005008 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL--AAHPLLNFVFNSLQVQS--SFDVAIE 261 (719)
Q Consensus 186 ~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~--~~~~ll~~~~~~l~~~~--~~~~a~~ 261 (719)
.+.++.++.+.+.+. ....+..++.++.+-... .+...+ ....+++.+++.+.++. ++..++.
T Consensus 367 ~~~l~~~l~~~l~~~--------~~~~r~~a~~~l~~i~~~-----~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~ 433 (861)
T 2bpt_A 367 LEPVLEFVEQNITAD--------NWRNREAAVMAFGSIMDG-----PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433 (861)
T ss_dssp HHHHHHHHHHHTTCS--------SHHHHHHHHHHHHHTSSS-----SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--------ChhHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 455666666666532 245678888887654321 111111 12457788888887654 5777777
Q ss_pred HHHHHhhcC------CChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhch----HHHHhCChhHHHHHH
Q 005008 262 VLVELVGRH------EGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAP----SLIVEASPEALALAD 331 (719)
Q Consensus 262 ~l~eil~~~------~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~----~~l~~~~~~~~~ll~ 331 (719)
++..+.... .++...+++.++. .+.++ .......|..+..+++... ..+. +....+++
T Consensus 434 ~l~~l~~~~~~~~~~~~~~~~~l~~l~~--------~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~---~~~~~il~ 501 (861)
T 2bpt_A 434 CIGRIADSVAESIDPQQHLPGVVQACLI--------GLQDH-PKVATNCSWTIINLVEQLAEATPSPIY---NFYPALVD 501 (861)
T ss_dssp HHHHHHHHHGGGSCTTTTHHHHHHHHHH--------HHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG---GGHHHHHH
T ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHH--------HhccC-hHHHHHHHHHHHHHHHhcccccchhhH---HHHHHHHH
Confidence 776665421 2344445443322 22232 4555556666666655432 1111 24567788
Q ss_pred HHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhcc--CCCCCCCCCCCCC
Q 005008 332 ALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQV--DESSFNDDGMVDL 409 (719)
Q Consensus 332 ~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~--p~~~~~~~~~~d~ 409 (719)
.++.+...+..+..+...+++....+.+.. . ....+++.++++.++..+.- +-... --..++
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~---~-----------~~~~~~~~~l~~~l~~~l~~~~~~~~~--i~~~~~ 565 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYA---T-----------DTVAETSASISTFVMDKLGQTMSVDEN--QLTLED 565 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHC---C-----------GGGHHHHHHHHHHHHHHHHHHTTSCGG--GCCHHH
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHc---c-----------hhhHHHHHHHHHHHHHHHHHHHhhhcc--cCChhh
Confidence 888887764323556666666655555532 1 12345566666666665531 11000 000112
Q ss_pred CchHHHHHhHhhHHHHHHHHhcCch--HHHHHHHHHhhcCCCCCCCh-hHHHHHHHHHHHhhhhcccCCcccchhHHHHH
Q 005008 410 PDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFFGSWGSANVPIPW-KEVETKLFALNVVSEVVLQEGQAFDFSVIMQL 486 (719)
Q Consensus 410 ~d~f~~~R~~~~d~l~~~~~il~~~--~~l~~~~~~~~~~~~~~~~W-~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~l 486 (719)
++...+.|..+.+++..++..+|.. .++..++..+...- ...++ .-.|.++.+++.+++....+-..+ ++.++..
T Consensus 566 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~ 643 (861)
T 2bpt_A 566 AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL-EKKDSAFIEDDVFYAISALAASLGKGFEKY-LETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH-HSTTGGGTHHHHHHHHHHHHHHHGGGGHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-ccCCCCcHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHH
Confidence 3556677888888888888888764 13334433321100 11224 667889999999988775432222 3444444
Q ss_pred HHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccchHHHHHHHHHhcCc----CchHHHHHHHHHHHHHHhhcc
Q 005008 487 VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLAAGISE----AVSSNACASALRKICEDASAL 561 (719)
Q Consensus 487 l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L~~vl~~l~~~l~~----~~v~~~Aa~al~~lc~~c~~~ 561 (719)
+....+++.+ .++.. ++.+++..+.-+..+ ..|++.+++.++..+.+ +.++..|..+|..++..++..
T Consensus 644 l~~~l~~~~~------~vr~~-a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 644 LLKALNQVDS------PVSIT-AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp HHHHHHCTTS------HHHHH-HHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhccccH------HHHHH-HHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 3332233332 24554 358888877766543 23678888888888865 458999999999999999887
Q ss_pred cCCCchHHHHHH-HHHHHHhcC-C-C-------hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 005008 562 IDEPSNLEILMW-IGEALEKRH-L-P-------LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (719)
Q Consensus 562 l~~p~~~~~l~~-~~~~l~~~~-l-~-------~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (719)
+. | +++.++. +...+.... . + ...|..++++++.++..+... +..+..++..++..+...+.
T Consensus 717 ~~-~-~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~l~~~~~ 788 (861)
T 2bpt_A 717 FI-P-YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQFIAQVAE 788 (861)
T ss_dssp GH-H-HHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHHHHHHHH
T ss_pred HH-H-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHc
Confidence 64 3 5554443 333322110 0 1 224678888999998877632 13344555666665655543
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.99 E-value=0.0096 Score=64.13 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC--ccchH
Q 005008 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF--QTNAR 528 (719)
Q Consensus 451 ~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~--p~~L~ 528 (719)
..+|..+.++.-+++.+++.+.+ . . ++.++..+.....++..+ +|.+ ++.++|..++-.... ..+++
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~--~-~-~~~~~~~l~~~l~~~~~~------~r~a-al~~l~~l~~~~~~~~~~~~l~ 407 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCED--D-I-VPHVLPFIKEHIKNPDWR------YRDA-AVMAFGCILEGPEPSQLKPLVI 407 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT--T-H-HHHHHHHHHHHTTCSSHH------HHHH-HHHHHHHTSSSSCTTTTCTTTT
T ss_pred cccchHHHHHHHHHHHHHHhccH--H-H-HHHHHHHHHHHhcCCChH------HHHH-HHHHHHHHhcCCcHHHHHHHHH
Confidence 35699999999999999998762 2 2 567777766555555432 5665 479999988633211 24678
Q ss_pred HHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q 005008 529 PLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM 572 (719)
Q Consensus 529 ~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~ 572 (719)
.+++.+++.+.++ .|+..|+.++.++|+.++..+..+.+++.++
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 8999999999874 5999999999999999988662223554443
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.91 E-value=0.015 Score=65.19 Aligned_cols=460 Identities=13% Similarity=0.083 Sum_probs=225.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhc-ChHHHHHH-HHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHH
Q 005008 16 LNHDTESCNRVAANQWLVQFQQ-TDAAWEIA-TSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNAL 93 (719)
Q Consensus 16 ly~~~~~~~~~~A~~~L~~fq~-s~~aW~~~-~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~L 93 (719)
+..++|...|+-+--++..+-+ .++.-.++ ..+...-. +.+..+|-.|..+|-... .++....+-..+
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~---~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l 126 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCE---DPNPLIRALAVRTMGCIR-------VDKITEYLCEPL 126 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSS---SSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHH
Confidence 3445666777777777766644 44442322 22321111 134567777766664321 334444544444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCC--ChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCC
Q 005008 94 LVAAKRFSSGPPQLLTQICLALSALILRAV-EHG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNI 170 (719)
Q Consensus 94 l~~l~~~~~~~~~v~~kL~~ala~l~~~~~-~W~--~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l 170 (719)
...+ ...++.||++-+.++..++...+ .++ .+++.+...+... ++......+..|..+.++-.+... +
T Consensus 127 ~~~L---~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~----~ 197 (591)
T 2vgl_B 127 RKCL---KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNL----L 197 (591)
T ss_dssp HHHS---SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCS----C
T ss_pred HHHc---CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccc----h
Confidence 4443 24568999999999988886544 233 3455555555431 333345556666655554211000 1
Q ss_pred ChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhc
Q 005008 171 SSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL 250 (719)
Q Consensus 171 ~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l 250 (719)
.- .+..+.-+.+.+... ++-.+..+++++.. ++ |.+.-....+++.+...+
T Consensus 198 ~l-------------~~~~~~~Ll~~l~~~--------~~~~q~~il~~l~~---l~-----~~~~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 198 DL-------------NPQNINKLLTALNEC--------TEWGQIFILDCLSN---YN-----PKDDREAQSICERVTPRL 248 (591)
T ss_dssp CC-------------HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHT---SC-----CCSHHHHHHHHHHHTTCS
T ss_pred hc-------------cHHHHHHHHHcCCCC--------CchHHHHHHHHHHH---hC-----CCChHHHHHHHHHHHHHH
Confidence 10 112222222222211 12234455554432 21 111112245677777777
Q ss_pred CC--CChHHHHHHHHHHHhh---cCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChh
Q 005008 251 QV--QSSFDVAIEVLVELVG---RHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE 325 (719)
Q Consensus 251 ~~--~~~~~~a~~~l~eil~---~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~ 325 (719)
++ +.+.-.|+.++..+.. ..++..+.+..++.. .+. .+.+.|.+...-..+.+..++..++..+..+
T Consensus 249 ~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~---~L~--~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~--- 320 (591)
T 2vgl_B 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP---PLV--TLLSGEPEVQYVALRNINLIVQKRPEILKQE--- 320 (591)
T ss_dssp CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHH---HHH--HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTC---
T ss_pred cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HHH--HHhcCCccHHHHHHHHHHHHHHhChHHHHHH---
Confidence 64 4456677777777653 223444444433322 211 1223455543333444555555443332211
Q ss_pred HHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 005008 326 ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDG 405 (719)
Q Consensus 326 ~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~ 405 (719)
+..+ .|... .+..|...+++.++.+.+. + + ... ++..+...+. + .
T Consensus 321 ----~~~~-~~~~~--d~~~Ir~~al~~L~~l~~~----~--------n----v~~----iv~~L~~~l~---~-----~ 365 (591)
T 2vgl_B 321 ----IKVF-FVKYN--DPIYVKLEKLDIMIRLASQ----A--------N----IAQ----VLAELKEYAT---E-----V 365 (591)
T ss_dssp ----TTTT-SCCTT--SCHHHHHHHHHHHHHTCCS----S--------T----HHH----HHHHHHHHTT---S-----S
T ss_pred ----HHhh-eeccC--ChHHHHHHHHHHHHHHCCh----h--------h----HHH----HHHHHHHHHh---c-----C
Confidence 1111 12212 1345667888777665431 0 1 112 2333322221 1 0
Q ss_pred CCCCCchHHHHHhHhhHHHHHHHHhcCc--hHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHH
Q 005008 406 MVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVI 483 (719)
Q Consensus 406 ~~d~~d~f~~~R~~~~d~l~~~~~il~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i 483 (719)
| .+||+.+...+..++.-... ..++..+...+.. ..+|-..|+ +.+++.+....+.... ..+
T Consensus 366 --d-----~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~----~~~~v~~e~-i~~l~~ii~~~p~~~~----~~v 429 (591)
T 2vgl_B 366 --D-----VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT----KVNYVVQEA-IVVIRDIFRKYPNKYE----SII 429 (591)
T ss_dssp --C-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----CCHHHHHHH-HHHHHHHHHHSCSSCC----TTH
T ss_pred --C-----HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc----cchHHHHHH-HHHHHHHHHHCcchHH----HHH
Confidence 0 35787776666666543322 2355555554432 244666665 5577776655443211 123
Q ss_pred HHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcc
Q 005008 484 MQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASAL 561 (719)
Q Consensus 484 ~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~ 561 (719)
..++..+.....+. ++.. ++|++|+|++++.. -+.++..++..+.+ +.++..+..|+.++...++..
T Consensus 430 ~~L~~~l~~~~~~~------~~~~-~~wilGey~~~~~~----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~ 498 (591)
T 2vgl_B 430 ATLCENLDSLDEPD------ARAA-MIWIVGEYAERIDN----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE 498 (591)
T ss_dssp HHHHHTTTTCCSHH------HHHH-HHHHHHTTCTTCTT----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST
T ss_pred HHHHHHHHhccCHH------HHHH-HHHHHHcccccccC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH
Confidence 33334443333321 4444 57999999988754 34566666666654 458999999999998755422
Q ss_pred cCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 005008 562 IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (719)
Q Consensus 562 l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (719)
..+.+..+.+.......+.+.|.+.++..+.+
T Consensus 499 -----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 499 -----TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp -----THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred -----HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 22444444443323334567788777766554
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00057 Score=67.40 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=113.2
Q ss_pred CCChhHHHHHHHHHHH-hhhhcccCCc-ccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHH-hC-c-
Q 005008 451 PIPWKEVETKLFALNV-VSEVVLQEGQ-AFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWIS-AF-Q- 524 (719)
Q Consensus 451 ~~~W~~~Ea~L~~l~~-i~e~~~~~~~-~~~l~~i~~ll~~l~-~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~-~~-p- 524 (719)
+.+|.++-+++-++.. +.+++++-.. ..++..++..+.... .+++. .++.. ++.++|.+++-+. .+ .
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~------~v~~~-A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI------QAVAL-AAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH------HHHHH-HHHHHHHHHHHHCTTTSCH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH------HHHHH-HHHHHHHHHHhcccccccH
Confidence 4689999999999999 9877654220 112356776654444 66664 25554 5799999999986 44 4
Q ss_pred cchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 525 TNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 525 ~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
.|...+++.++..+.++ .|+.+|..|+..||+.|......+ +++.++ .+...+.+. +...|...+..+++++..
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~-~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG-RNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTC-TTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCC-cHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH
Confidence 68999999999999984 589999999999999986533211 244443 455554333 567899999999999988
Q ss_pred CCchHHHHHHHHHHH-HHHHHHHHhhhcc
Q 005008 602 VSNKELKNNLLARLL-SSSYEAIGKLIDG 629 (719)
Q Consensus 602 ~p~~~~~~~~l~~l~-~p~~~~l~~~~~~ 629 (719)
.+.. +..+...+ ..++..+.+++..
T Consensus 177 ~~~~---~~~l~~~l~~~iip~l~~~l~D 202 (249)
T 2qk1_A 177 EKDG---YSTLQRYLKDEVVPIVIQIVND 202 (249)
T ss_dssp CCSC---SHHHHHHHTTTHHHHHHHHHTC
T ss_pred cCCc---chhHHHHHHHHHHHHHHHHhcC
Confidence 7642 01123344 4555555556543
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.63 E-value=0.0013 Score=64.62 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=104.4
Q ss_pred CCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccchH
Q 005008 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNAR 528 (719)
Q Consensus 451 ~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~-~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L~ 528 (719)
+.+|..+.+++.+|..+.++.+.-... .+..++..+.... .++.. .++.. ++.++|.++.-+... ..|+.
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~------~V~~~-a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNV------VLVAM-AGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCH------HHHHH-HHHHHHHHHHHHGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCH------HHHHH-HHHHHHHHHHHHhhhHHHHHH
Confidence 468999999999999999875432111 1456776655544 35553 25555 479999999877543 24788
Q ss_pred HHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchH
Q 005008 529 PLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (719)
Q Consensus 529 ~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~ 606 (719)
.+++.++..+.++. ++.+|+.|+..++..+. ....+-.+...+.. -+...|..++..++.++....++.
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN--KNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999864 89999999999987432 22222233333322 256789999999999998875442
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005008 607 LKNNLLARLLSSSYEAI 623 (719)
Q Consensus 607 ~~~~~l~~l~~p~~~~l 623 (719)
....++..++..+...+
T Consensus 169 ~~~~~l~~l~p~l~~~l 185 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTL 185 (242)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 21345555555554443
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.31 E-value=0.35 Score=54.21 Aligned_cols=431 Identities=13% Similarity=0.072 Sum_probs=203.0
Q ss_pred chhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhcc-CCChHHHHHHHhh
Q 005008 59 DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQ 137 (719)
Q Consensus 59 ~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~-W~~~i~~li~~l~ 137 (719)
+..+|-.|..+|-+-. +++....+-..+...+. ..++.||++-+.++..++...+. =+.+++.+...+.
T Consensus 120 n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~---~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~ 189 (618)
T 1w63_A 120 TQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLK---TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLN 189 (618)
T ss_dssp SSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH---SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTT
T ss_pred CHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhC
Confidence 3466666666665432 22333444444444443 45689999999999888876441 1122222233332
Q ss_pred hccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCC--C-CcchhhhHH
Q 005008 138 NLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGG--V-PVQLHDRNR 214 (719)
Q Consensus 138 ~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~--~-~~~~~~l~~ 214 (719)
.. ++......+..|..+.+.- ++ ....+....+.++..|.+........+ . +.+++-++.
T Consensus 190 D~--d~~V~~~Al~~L~~i~~~~-----------~~----~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 190 EK--NHGVLHTSVVLLTEMCERS-----------PD----MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp CC--CHHHHHHHHHHHHHHCCSH-----------HH----HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred CC--CHhHHHHHHHHHHHHHHhC-----------hH----HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 21 2223344455554433310 11 123445567788888877654321110 0 012334566
Q ss_pred HHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCC--------CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHH
Q 005008 215 KILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--------QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKE 286 (719)
Q Consensus 215 ~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~--------~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~ 286 (719)
.+++++...... .++. ...+++.+.+.+.. ..+.-.|+.++..+ ... ..+...+..
T Consensus 253 ~il~~L~~l~~~------~~~~--~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l---~~~--~~l~~~a~~--- 316 (618)
T 1w63_A 253 RILRLLRILGRN------DDDS--SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI---KSE--SGLRVLAIN--- 316 (618)
T ss_dssp HHHHHHHHHTTT------CHHH--HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS---CCC--HHHHHHHHH---
T ss_pred HHHHHHHHhCCC------CHHH--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc---CCC--HHHHHHHHH---
Confidence 677777654432 1111 12233444333321 11223344444332 211 111111111
Q ss_pred HchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccch
Q 005008 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDA 366 (719)
Q Consensus 287 ~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~ 366 (719)
.+. ..+.+.|.+...-....+..++..++..+. .....++.|...+ |..|...+++-.+.+.+. +
T Consensus 317 ~L~-~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-------~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~----~- 381 (618)
T 1w63_A 317 ILG-RFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-------RHRSTIVDCLKDL--DVSIKRRAMELSFALVNG----N- 381 (618)
T ss_dssp HHH-HHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-------GGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCS----S-
T ss_pred HHH-HHHhCCCCchHHHHHHHHHHHHhhCHHHHH-------HHHHHHHHHccCC--ChhHHHHHHHHHHHHccc----c-
Confidence 111 123344444322223444555555444332 2345667777775 677888888764444321 0
Q ss_pred hhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch--HHHHHHHHHh
Q 005008 367 SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFFGS 444 (719)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~--~~l~~~~~~~ 444 (719)
+ ..+++.+++..+ . + . | .+||..+...+..++.-..++ .++..++..+
T Consensus 382 -------n----v~~iv~eL~~~l----~---~-----~--d-----~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL 431 (618)
T 1w63_A 382 -------N----IRGMMKELLYFL----D---S-----C--E-----PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVL 431 (618)
T ss_dssp -------S----THHHHHHHHHHH----H---H-----C--C-----HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred -------c----HHHHHHHHHHHH----H---h-----C--C-----HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 1 122333333322 1 0 0 0 357887777777777654332 3666666543
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccC-chhhhhhHHHHHHHHHHHHHHhhHHHHHh-
Q 005008 445 WGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVIGSYSKWISA- 522 (719)
Q Consensus 445 ~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~-~~~~~~~~~~l~~~t~~~~ig~y~~~~~~- 522 (719)
.... ++-.-| ++.++..+....++ -. -..+..++..+.++ ... .+... +.|++|.|++.+..
T Consensus 432 ~~~~----~~v~~~-~~~~l~~ii~~~p~-l~---~~~v~~L~~~l~~~~~~~------~~~~~-~~wilGEy~~~i~~~ 495 (618)
T 1w63_A 432 TTAG----SYVRDD-AVPNLIQLITNSVE-MH---AYTVQRLYKAILGDYSQQ------PLVQV-AAWCIGEYGDLLVSG 495 (618)
T ss_dssp HHTG----GGSCSS-HHHHHHHHHHHSCS-TH---HHHHHHHHHHHHHCCSCS------HHHHH-HHHHHHHHHHHHTTC
T ss_pred Hhcc----chhHHH-HHHHHHHHHhcChh-HH---HHHHHHHHHHHhcccccH------HHHHH-HHHHHhhhHHHhccc
Confidence 3211 122222 23344444332221 11 01122233333321 111 13344 47999999998854
Q ss_pred ----------CccchHHHHHHHHHh-cCcCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHH
Q 005008 523 ----------FQTNARPLLLFLAAG-ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEV 591 (719)
Q Consensus 523 ----------~p~~L~~vl~~l~~~-l~~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l 591 (719)
+|..+...+.-++.. ..++.++..+..|+.++...++ ...+.+..+..... ...+.+.|.+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~------~~~~~l~~~L~~~~-~~~d~evrdRA 568 (618)
T 1w63_A 496 QCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFT------CTVNRIKKVVSIYG-SSIDVELQQRA 568 (618)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS------SCHHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc------chHHHHHHHHHHhc-CCCCHHHHHHH
Confidence 334445555555544 3456789999999999987553 23444555544432 34466778887
Q ss_pred HHHHHHHHc
Q 005008 592 VGAISLILG 600 (719)
Q Consensus 592 ~eai~~vi~ 600 (719)
++....+-.
T Consensus 569 ~~y~~ll~~ 577 (618)
T 1w63_A 569 VEYNALFKK 577 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 776655443
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.13 E-value=0.014 Score=62.71 Aligned_cols=335 Identities=11% Similarity=0.008 Sum_probs=172.4
Q ss_pred hhhHHHHHHHHHHHHHcccccccCcchhccc-chHHHHHHhcCCC---ChHHHHHHHHHHHhhcCCChhHHHH-Hhhhhh
Q 005008 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPFL 284 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~l~~~---~~~~~a~~~l~eil~~~~~~~~~l~-~~~~~l 284 (719)
..++..++.++..-+.... +-+....... .+++.+.+.|.++ +++..|+.++..+.....+....+. .++
T Consensus 34 ~~~r~~A~~~L~~l~~~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--- 108 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEP--NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGA--- 108 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSS--SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTH---
T ss_pred HHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC---
Confidence 4678889999988765210 1111223334 7888888888765 4678899999988875433222222 122
Q ss_pred HHHchhhhhhcCchhHHhHHHHHHHHHHHhch---HHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHH
Q 005008 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (719)
Q Consensus 285 ~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l 361 (719)
.+.+. ..+.++|.+....-+..+..++.... ..+.+ ...++.++.+.... .+.++...+...+..+...-
T Consensus 109 i~~L~-~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 109 VPIFI-ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-----CNILPPLLQLFSKQ-NRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-----CCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHhCCC
Confidence 22222 24456677776667777777765432 12221 13455666666542 15677777776666655321
Q ss_pred hccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch-------
Q 005008 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA------- 434 (719)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~------- 434 (719)
+.. ...... ..+++.++..+. + . + .+.|.....++.+++..-...
T Consensus 182 ---~~~------~~~~~~----~~~l~~L~~~l~---~-----~-----~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 233 (450)
T 2jdq_A 182 ---SPP------PEFAKV----SPCLNVLSWLLF---V-----S-----D--TDVLADACWALSYLSDGPNDKIQAVIDA 233 (450)
T ss_dssp ---SSC------CCGGGT----GGGHHHHHHHTT---C-----C-----C--HHHHHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred ---CCC------CCHHHH----HHHHHHHHHHHc---c-----C-----C--HHHHHHHHHHHHHHHCCCcHHHHHHHHc
Confidence 000 000111 223333333332 0 0 1 234555655665554321000
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 005008 435 TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG 514 (719)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig 514 (719)
..+..+...+ ...+|.-.+.++.+++.++.+.........-..++..+..+..++.+ .++.. +++++|
T Consensus 234 ~~i~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~------~vr~~-a~~~L~ 301 (450)
T 2jdq_A 234 GVCRRLVELL-----MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE------SIKKE-ACWTIS 301 (450)
T ss_dssp TTHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH------HHHHH-HHHHHH
T ss_pred CcHHHHHHHH-----CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH------HHHHH-HHHHHH
Confidence 0223333322 24579999999999999987543211000001233333344444443 25555 469999
Q ss_pred hhHHHHHhCcc-ch-HHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhc-c---cCCCchHHHHHHHHHHHHhcCCChh
Q 005008 515 SYSKWISAFQT-NA-RPLLLFLAAGISE--AVSSNACASALRKICEDASA-L---IDEPSNLEILMWIGEALEKRHLPLE 586 (719)
Q Consensus 515 ~y~~~~~~~p~-~L-~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~-~---l~~p~~~~~l~~~~~~l~~~~l~~~ 586 (719)
..+..-..+-+ .+ ..+++.++..+.+ ++++..|+.++.+++..... . +.....++.|..+ +... +.+
T Consensus 302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l---l~~~--~~~ 376 (450)
T 2jdq_A 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL---LTVM--DSK 376 (450)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG---GGSS--CHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH---hcCC--CHH
Confidence 88752111111 11 1445555555544 56999999999999975321 1 1101122333332 2222 556
Q ss_pred hHHHHHHHHHHHHcc
Q 005008 587 DEEEVVGAISLILGS 601 (719)
Q Consensus 587 ~~~~l~eai~~vi~~ 601 (719)
.+...+++++.++..
T Consensus 377 v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 377 IVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888888764
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.93 E-value=0.16 Score=55.73 Aligned_cols=306 Identities=11% Similarity=0.040 Sum_probs=155.7
Q ss_pred HHHHHHhcC--CCChHHHHHHHHHHHhhcCC-ChhHHHH-HhhhhhHHHchhhhhhcCc-hhHHhHHHHHHHHHHHhch-
Q 005008 243 LNFVFNSLQ--VQSSFDVAIEVLVELVGRHE-GLPQALL-CRVPFLKELLLLPALTDGD-EKVIGGLACLMSEIGQAAP- 316 (719)
Q Consensus 243 l~~~~~~l~--~~~~~~~a~~~l~eil~~~~-~~~~~l~-~~~~~l~~~~~~~a~~~~d-~e~~~~l~~l~~~~~e~~~- 316 (719)
++.+++.|. +++....|+.++..+++... +....+. .+++ +.+. ..+.+++ .+.....+..+..++....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v---~~Lv-~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV---PRFV-QFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCH---HHHH-HHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCH---HHHH-HHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 344444554 34567788899999887654 3333322 2222 2221 1334444 5555555666666654321
Q ss_pred --HHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHH--HHHHHHHH
Q 005008 317 --SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFS--ALLDALLL 392 (719)
Q Consensus 317 --~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~--~Lv~~l~~ 392 (719)
..+.+ ...++.|+.+...+ +.++.+.++..+..+... +. . .+..+. ..++.++.
T Consensus 152 ~~~~~~~-----~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~----~~-------~----~~~~i~~~g~l~~Ll~ 209 (528)
T 4b8j_A 152 NTKVVID-----HGAVPIFVKLLGSS--SDDVREQAVWALGNVAGD----SP-------K----CRDLVLANGALLPLLA 209 (528)
T ss_dssp HHHHHHH-----TTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHT----CH-------H----HHHHHHHTTCHHHHHH
T ss_pred HHHHHHh-----CCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCC----Ch-------h----hHHHHHHCCcHHHHHH
Confidence 22221 13566777777765 567888887776666532 10 0 111111 13344444
Q ss_pred HhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCc-h-H----HHHHHHHHhhcCCCCCCChhHHHHHHHHHHH
Q 005008 393 RAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS-A-T----FIQKVFFGSWGSANVPIPWKEVETKLFALNV 466 (719)
Q Consensus 393 k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~-~-~----~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~ 466 (719)
.+.... + ...|+.+..++..++.--.. . . .+..+...+ .+.++.-.+.++.+|+.
T Consensus 210 lL~~~~------------~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-----~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 210 QLNEHT------------K--LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI-----HSNDEEVLTDACWALSY 270 (528)
T ss_dssp TCCTTC------------C--HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT-----TCCCHHHHHHHHHHHHH
T ss_pred HHhcCC------------C--HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHH
Confidence 432110 0 23466666667666543111 1 1 233333322 23568889999999999
Q ss_pred hhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCcc-ch-HHHHHHHHHhcCc---C
Q 005008 467 VSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-NA-RPLLLFLAAGISE---A 541 (719)
Q Consensus 467 i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~-~L-~~vl~~l~~~l~~---~ 541 (719)
+++..........-..++..+..+..++.+ .++.. +++++|..+.--....+ .+ ..+++.++..+.+ +
T Consensus 271 l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~------~v~~~-a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 343 (528)
T 4b8j_A 271 LSDGTNDKIQAVIEAGVCPRLVELLLHPSP------SVLIP-ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 343 (528)
T ss_dssp HTSSCHHHHHHHHHTTCHHHHHHHTTCSCH------HHHHH-HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred HHcCCHHHHHHHHHcCHHHHHHHHHcCCCh------hHHHH-HHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence 986533110000000122223333344433 24444 46888887741111001 01 2345555555554 4
Q ss_pred chHHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 005008 542 VSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (719)
Q Consensus 542 ~v~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (719)
.++..|+.++.+++..... .+.....++.|..+.. .+ +.+.+.....+++.+.....++
T Consensus 344 ~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~---~~--~~~v~~~a~~aL~nl~~~~~~~ 405 (528)
T 4b8j_A 344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ---TA--EFDIKKEAAWAISNATSGGSHD 405 (528)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH---HS--CHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh---cC--CHHHHHHHHHHHHHHHcCCCHH
Confidence 5899999999999853222 1111224555555543 22 5678899999999998774444
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.73 E-value=0.06 Score=59.30 Aligned_cols=334 Identities=10% Similarity=-0.029 Sum_probs=171.8
Q ss_pred hhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC---ChHHHHHHHHHHHhhcCCChhHHHH-HhhhhhH
Q 005008 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPFLK 285 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~---~~~~~a~~~l~eil~~~~~~~~~l~-~~~~~l~ 285 (719)
..++..++.++..-+.... .-+...+.....++.+.+.|.++ ++...|+.+|..+.....+....+. .+.+
T Consensus 101 ~~~~~~A~~~L~~ll~~~~--~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i--- 175 (530)
T 1wa5_B 101 MQEQLSATVKFRQILSREH--RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV--- 175 (530)
T ss_dssp HHHHHHHHHHHHHHTCCSS--SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHhCCCC--CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH---
Confidence 4567778888877654320 11122344567889999999864 4678899999998875433333222 1222
Q ss_pred HHchhhhhhcCchhHHhHHHHHHHHHHHhc---hHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHh
Q 005008 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAA---PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362 (719)
Q Consensus 286 ~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~---~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~ 362 (719)
+.+. ..+.+.+.+.....+..+..++... ...+.. ...++.|+.+...+ +.++...++.....+...-
T Consensus 176 ~~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-----~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~- 246 (530)
T 1wa5_B 176 PLFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-----CNAMEPILGLFNSN--KPSLIRTATWTLSNLCRGK- 246 (530)
T ss_dssp HHHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCS-
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-----cCcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCC-
Confidence 1221 1334556677677777777776432 222222 13456666666653 5667666666555554321
Q ss_pred ccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHH------
Q 005008 363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF------ 436 (719)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~------ 436 (719)
+.. .. ......+++.++..+.-+ + .+.|..+..++.+++.. .+..
T Consensus 247 --~~~------~~----~~~~~~~l~~L~~lL~~~-------------d--~~v~~~a~~~L~~L~~~--~~~~~~~~~~ 297 (530)
T 1wa5_B 247 --KPQ------PD----WSVVSQALPTLAKLIYSM-------------D--TETLVDACWAISYLSDG--PQEAIQAVID 297 (530)
T ss_dssp --SSC------CC----HHHHGGGHHHHHHHTTCC-------------C--HHHHHHHHHHHHHHHSS--CHHHHHHHHH
T ss_pred --CCC------Cc----HHHHHhHHHHHHHHHcCC-------------C--HHHHHHHHHHHHHHhCC--CHHHHHHHHh
Confidence 000 00 112223344444443210 1 24565665566555432 1111
Q ss_pred ---HHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 005008 437 ---IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (719)
Q Consensus 437 ---l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~i 513 (719)
+..+...+ ...+|.-.+.++.+|+.++.+........--..++..+..+..++.+ .++..+ +++|
T Consensus 298 ~~~v~~Lv~lL-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------~vr~~A-~~aL 365 (530)
T 1wa5_B 298 VRIPKRLVELL-----SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE------NIKKEA-CWTI 365 (530)
T ss_dssp TTCHHHHHHGG-----GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH------HHHHHH-HHHH
T ss_pred cCcHHHHHHHH-----CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH------HHHHHH-HHHH
Confidence 22222222 23569999999999999986432111000001133333333444432 255554 6999
Q ss_pred HhhHHHHHhCcc-ch-HHHHHHHHHhcC--cCchHHHHHHHHHHHHHHhhc--c----cCCCchHHHHHHHHHHHHhcCC
Q 005008 514 GSYSKWISAFQT-NA-RPLLLFLAAGIS--EAVSSNACASALRKICEDASA--L----IDEPSNLEILMWIGEALEKRHL 583 (719)
Q Consensus 514 g~y~~~~~~~p~-~L-~~vl~~l~~~l~--~~~v~~~Aa~al~~lc~~c~~--~----l~~p~~~~~l~~~~~~l~~~~l 583 (719)
+.++..-..+-+ ++ ..+++.|+..+. +++++..|+.++.+++..+.. . +.....++.|..+. .. -
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll---~~--~ 440 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL---EI--A 440 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT---TT--C
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH---hC--C
Confidence 988742111100 11 123344444443 456999999999999986542 1 11011223333332 22 2
Q ss_pred ChhhHHHHHHHHHHHHccCC
Q 005008 584 PLEDEEEVVGAISLILGSVS 603 (719)
Q Consensus 584 ~~~~~~~l~eai~~vi~~~p 603 (719)
+.+.+...+.+++.++...+
T Consensus 441 ~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 441 DNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhh
Confidence 56678888888888886543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.45 E-value=0.25 Score=54.19 Aligned_cols=333 Identities=9% Similarity=-0.041 Sum_probs=167.5
Q ss_pred hhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCC---CChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHH
Q 005008 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKE 286 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~---~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~ 286 (719)
..++..++.++...+.... .-+...+.....++.+.+.|.+ +++...|+.+|..+.....+....+... +..+
T Consensus 88 ~~~~~~A~~~L~~l~s~~~--~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~ 163 (528)
T 4b8j_A 88 NNLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH--GAVP 163 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSS--SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC--CcHH
Confidence 4567788888887766421 0122334556788888888875 3567889999999887654333333221 1112
Q ss_pred HchhhhhhcCchhHHhHHHHHHHHHHHhch---HHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhc
Q 005008 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAP---SLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILG 363 (719)
Q Consensus 287 ~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~---~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~ 363 (719)
.+. ..+.+++.+.....+..+..++.... ..+.. ...++.|+.+..... +..+...+......+...-
T Consensus 164 ~L~-~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-----~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~-- 234 (528)
T 4b8j_A 164 IFV-KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-----NGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGK-- 234 (528)
T ss_dssp HHH-HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-----TTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSS--
T ss_pred HHH-HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-----CCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCC--
Confidence 222 13445666666666777766654322 12221 124556666663211 4556665555444444321
Q ss_pred cchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHHH------
Q 005008 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFI------ 437 (719)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l------ 437 (719)
+. ... .....+++.++..+.-+ + .+.|..+..++.+++. +.+...
T Consensus 235 -~~-------~~~----~~~~~~l~~L~~lL~~~----------~-----~~v~~~a~~aL~~l~~--~~~~~~~~~~~~ 285 (528)
T 4b8j_A 235 -PQ-------PSF----EQTRPALPALARLIHSN----------D-----EEVLTDACWALSYLSD--GTNDKIQAVIEA 285 (528)
T ss_dssp -SC-------CCH----HHHTTHHHHHHHHTTCC----------C-----HHHHHHHHHHHHHHTS--SCHHHHHHHHHT
T ss_pred -CC-------CcH----HHHHHHHHHHHHHHCCC----------C-----HHHHHHHHHHHHHHHc--CCHHHHHHHHHc
Confidence 10 001 11233444444443211 0 2345444445544432 222211
Q ss_pred ---HHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCc-hhhhhhHHHHHHHHHHHHH
Q 005008 438 ---QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR-SEELKGFMHIVYRSLADVI 513 (719)
Q Consensus 438 ---~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~-~~~~~~~~~l~~~t~~~~i 513 (719)
..+...+ .+.++.-.+.++.+|+.++.+.........-..++..+..+..++ .+ .++.. ++++|
T Consensus 286 g~v~~Lv~lL-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~------~v~~~-A~~~L 353 (528)
T 4b8j_A 286 GVCPRLVELL-----LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK------SIKKE-ACWTI 353 (528)
T ss_dssp TCHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH------HHHHH-HHHHH
T ss_pred CHHHHHHHHH-----cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH------HHHHH-HHHHH
Confidence 2222222 234688899999999999864331110000011223232333333 32 24554 46899
Q ss_pred HhhHHHHHh------CccchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcc----cCCCchHHHHHHHHHHHHhcCC
Q 005008 514 GSYSKWISA------FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASAL----IDEPSNLEILMWIGEALEKRHL 583 (719)
Q Consensus 514 g~y~~~~~~------~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~----l~~p~~~~~l~~~~~~l~~~~l 583 (719)
+.++..-.. ....++.++..+-.+ ++.++..|+.+|.+++...... +.....++.|..+. .. -
T Consensus 354 ~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL---~~--~ 426 (528)
T 4b8j_A 354 SNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL---IC--P 426 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG---GC--S
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHH---cC--C
Confidence 888742111 112334444443332 5679999999999999763211 11011233333332 22 2
Q ss_pred ChhhHHHHHHHHHHHHccCC
Q 005008 584 PLEDEEEVVGAISLILGSVS 603 (719)
Q Consensus 584 ~~~~~~~l~eai~~vi~~~p 603 (719)
+.+.+..++++++.++...+
T Consensus 427 d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 427 DIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 55678888899999886543
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.45 E-value=1.9 Score=49.62 Aligned_cols=288 Identities=14% Similarity=0.049 Sum_probs=145.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhc---ChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (719)
Q Consensus 8 ~v~~av~~ly~~~~~~~~~~A~~~L~~fq~---s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~ 84 (719)
.+...|..|. +++...|..+-+.|....+ ...+|.....+|.++ +..+|--|+.+|.+-.... +
T Consensus 116 ~i~~lv~~L~-~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~------d~~vr~~A~~~L~~L~~~~------~ 182 (780)
T 2z6g_A 116 AHPTNVQRLA-EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------A 182 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTSH------H
T ss_pred cHHHHHHHhc-CccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCC------CHHHHHHHHHHHHHHhCCC------h
Confidence 3566677775 4555566666655543211 256788888899754 3489999999998754421 1
Q ss_pred hHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-----cCCChHHHHHHHhhhccCCCchhHHHHHHH
Q 005008 85 AKD------ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (719)
Q Consensus 85 ~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~-----~W~~~i~~li~~l~~~~~~~~~~~~~L~~L 153 (719)
.+. ..-..|+..+.. ..+..++...+.+|..++.... .-...++.++..+++. ++......+..|
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL 258 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTL 258 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 121 222333333432 2356788888888887654321 1235677777777653 233445566666
Q ss_pred hhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccC
Q 005008 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (719)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~ 233 (719)
..|...-. ..|.. +. ...++..|...+... ...++..++.|+..|..-. .-.
T Consensus 259 ~nLa~~~~-----------~~~~~----v~--~~g~v~~Lv~lL~~~--------~~~v~~~a~~aL~~La~~~---~e~ 310 (780)
T 2z6g_A 259 HNLLLHQE-----------GAKMA----VR--LAGGLQKMVALLNKT--------NVKFLAITTDCLQILAYGN---QES 310 (780)
T ss_dssp HHHHHHST-----------THHHH----HH--HTTHHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHhCCCh-----------hhHHH----HH--HcCCHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcCC---hHH
Confidence 66554321 11111 11 123445555555532 2457788889999887410 000
Q ss_pred cchhcccchHHHHHHhcCCCC---hHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHchhhhhhcCchhHHhHHHHHHH
Q 005008 234 QGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (719)
Q Consensus 234 ~~~~~~~~ll~~~~~~l~~~~---~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~ 309 (719)
...+.....++.+...+.+.+ ....++.++..+.. .......+.. +++ +.+. ..+.+.+.+..+..+..+.
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l---~~Ll-~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM---QALG-LHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH---HHHG-GGTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH---HHHH-HHHcCCchHHHHHHHHHHH
Confidence 111233445666666666543 34456666665543 3333332321 111 1222 1344556666666677776
Q ss_pred HHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHH
Q 005008 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQ 352 (719)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~ 352 (719)
.++...... ......++.|+.+...+ +.++.+.+..
T Consensus 386 ~L~~~~~~~-----~~~~~~i~~Lv~lL~~~--d~~vr~~A~~ 421 (780)
T 2z6g_A 386 NLSDAATKQ-----EGMEGLLGTLVQLLGSD--DINVVTCAAG 421 (780)
T ss_dssp HHHTTCTTC-----SCCHHHHHHHHHHTTCS--CHHHHHHHHH
T ss_pred HHhccchhh-----hhhhhHHHHHHHHHcCC--CHHHHHHHHH
Confidence 665543221 12345677777777664 5566655543
No 30
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.27 E-value=0.26 Score=54.18 Aligned_cols=334 Identities=12% Similarity=0.061 Sum_probs=161.2
Q ss_pred hhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCC---CChHHHHHHHHHHHhhcCCChhHHHHH-hhhhhH
Q 005008 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLC-RVPFLK 285 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~---~~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~ 285 (719)
...+..+++++..-+.... +-|.+.+.....++.+.+.|.. +++...|+-+|..+.....+....+.. +.+
T Consensus 90 ~~~q~~a~~~~rklLs~~~--~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai--- 164 (529)
T 3tpo_A 90 LESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI--- 164 (529)
T ss_dssp HHHHHHHHHHHHHHHTSSS--CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH---
T ss_pred HHHHHHHHHHHHHHHcCCC--CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH---
Confidence 3456667777766554321 2234456677888888888863 346777888999988765433333332 121
Q ss_pred HHchhhhhhcCchhHHhHHHHHHHHHHHh---chHHHHhCChhHHHHHHHHHhhccCCCCCchhhh-hhH--HHHHHHHH
Q 005008 286 ELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIAD-STL--QFWSTLAS 359 (719)
Q Consensus 286 ~~~~~~a~~~~d~e~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~-~~~--~FW~~l~e 359 (719)
+.+. ..+.+.+.+....-+..+..++.. +...+.+. ..++.++.+...+ +.+... ... -.|. +..
T Consensus 165 p~Lv-~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-----g~i~~Ll~lL~~~--~~~~~~~~~~~~a~~~-L~n 235 (529)
T 3tpo_A 165 PAFI-SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH-----GAIDPLLALLAVP--DLSTLACGYLRNLTWT-LSN 235 (529)
T ss_dssp HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHTTCSS--CGGGSCHHHHHHHHHH-HHH
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc-----CCcHHHHHHHhcc--chhHhHHHHHHHHHHH-HHH
Confidence 2222 144566777666666666655432 22223221 2345566666654 222111 111 1121 111
Q ss_pred HHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHH---
Q 005008 360 YILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--- 436 (719)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~--- 436 (719)
+.. +... .... .....+++.+++-+..+. .+.+.+....+.++.. +.+..
T Consensus 236 -l~~-~~~~----~~~~----~~~~~~lp~L~~LL~~~~---------------~~v~~~a~~aL~~l~~--~~~~~~~~ 288 (529)
T 3tpo_A 236 -LCR-NKNP----APPL----DAVEQILPTLVRLLHHND---------------PEVLADSCWAISYLTD--GPNERIEM 288 (529)
T ss_dssp -HHC-CCTT----CCCH----HHHHHHHHHHHHHTTSSC---------------HHHHHHHHHHHHHHHS--SCHHHHHH
T ss_pred -HHh-cccc----hhhH----HHHhhHHHHHHHHhcCCc---------------HHHHHHHHHHHHHhhh--hhhhhHHH
Confidence 111 1100 0001 112334444444433211 1234444444443332 22211
Q ss_pred ------HHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 005008 437 ------IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (719)
Q Consensus 437 ------l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~ 510 (719)
+..+... . .+.++.-.+.++.+++.++.+-+.......-...+..+..+..++.+. ++.. ++
T Consensus 289 v~~~g~i~~Lv~l-L----~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~------i~~~-a~ 356 (529)
T 3tpo_A 289 VVKKGVVPQLVKL-L----GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN------IQKE-AT 356 (529)
T ss_dssp HHTTTCHHHHHHH-H----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHH------HHHH-HH
T ss_pred HHhccchHHHHHH-h----cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHH------HHHH-HH
Confidence 2222222 2 235678888999999988754321100000000112223334455432 4554 46
Q ss_pred HHHHhhHHHHHhCccch--HHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcc----cCCCchHHHHHHHHHHHHhcC
Q 005008 511 DVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNACASALRKICEDASAL----IDEPSNLEILMWIGEALEKRH 582 (719)
Q Consensus 511 ~~ig~y~~~~~~~p~~L--~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~----l~~p~~~~~l~~~~~~l~~~~ 582 (719)
++++..+..-..+.+.+ ..+++.++..+.+ ++++..|+.|+.+++..+... +.....++.|..+. . .
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL---~--~ 431 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL---S--A 431 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG---G--C
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh---c--C
Confidence 99988775322221111 1355566666655 458999999999999765432 11112344444433 2 2
Q ss_pred CChhhHHHHHHHHHHHHcc
Q 005008 583 LPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 583 l~~~~~~~l~eai~~vi~~ 601 (719)
-+.+.+..+++++..++..
T Consensus 432 ~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 2556677888888888754
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.06 E-value=0.19 Score=55.17 Aligned_cols=355 Identities=9% Similarity=-0.037 Sum_probs=174.5
Q ss_pred CCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCC
Q 005008 125 HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGG 204 (719)
Q Consensus 125 W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~ 204 (719)
+...++.++..+++. ++......+..|..+...-. .+. +. .+.. ..++..|...+....
T Consensus 85 ~~~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~---------~~~-~~----~~~~--~g~i~~Lv~~L~~~~--- 143 (530)
T 1wa5_B 85 LQQELPQMTQQLNSD--DMQEQLSATVKFRQILSREH---------RPP-ID----VVIQ--AGVVPRLVEFMRENQ--- 143 (530)
T ss_dssp --CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSS---------SCS-HH----HHHH--TTCHHHHHHTTSTTS---
T ss_pred hHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCC---------Ccc-HH----HHHH--CCCHHHHHHHhCCCC---
Confidence 667788888888653 23333344444443322110 000 11 1111 234444555554321
Q ss_pred CCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcC--CCChHHHHHHHHHHHhhcCCChhHHHHHhhh
Q 005008 205 VPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ--VQSSFDVAIEVLVELVGRHEGLPQALLCRVP 282 (719)
Q Consensus 205 ~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~--~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~ 282 (719)
+..++..++.++..-..... -....+.....++.+...|. +++++..|+.+|..+..........+...
T Consensus 144 ----~~~v~~~A~~~L~~l~~~~~---~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-- 214 (530)
T 1wa5_B 144 ----PEMLQLEAAWALTNIASGTS---AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-- 214 (530)
T ss_dssp ----CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--
T ss_pred ----CHHHHHHHHHHHHHHhCCCH---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc--
Confidence 24577778877776543210 00011233456666666665 45678999999999887543333332221
Q ss_pred hhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHh
Q 005008 283 FLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362 (719)
Q Consensus 283 ~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~ 362 (719)
+..+.+. ..+.+.+.+.....+..+..++....+.. ........++.|+.+..++ |.++...++.....+...
T Consensus 215 ~~l~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~-- 287 (530)
T 1wa5_B 215 NAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQP--DWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG-- 287 (530)
T ss_dssp TCHHHHH-HGGGSCCHHHHHHHHHHHHHHHCCSSSCC--CHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS--
T ss_pred CcHHHHH-HHhccCCHHHHHHHHHHHHHHhCCCCCCC--cHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC--
Confidence 1112221 13344666676777777776664320000 0001234567777777774 566666666554444321
Q ss_pred ccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchH-------
Q 005008 363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT------- 435 (719)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~------- 435 (719)
... ....... ..+++.++..+..+. ...|.....++.+++. +.+.
T Consensus 288 --~~~------~~~~~~~---~~~v~~Lv~lL~~~~---------------~~v~~~a~~~L~~l~~--~~~~~~~~~~~ 339 (530)
T 1wa5_B 288 --PQE------AIQAVID---VRIPKRLVELLSHES---------------TLVQTPALRAVGNIVT--GNDLQTQVVIN 339 (530)
T ss_dssp --CHH------HHHHHHH---TTCHHHHHHGGGCSC---------------HHHHHHHHHHHHHHTT--SCHHHHHHHHH
T ss_pred --CHH------HHHHHHh---cCcHHHHHHHHCCCC---------------hhhHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 110 0111111 133444444443110 2345444445544432 2221
Q ss_pred --HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHH
Q 005008 436 --FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSL 509 (719)
Q Consensus 436 --~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~----~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~ 509 (719)
.+..+...+ .+.+|.-.+.++++|+.++.+....-.. ..++.++.++ .++.+ .++.. +
T Consensus 340 ~~~l~~L~~lL-----~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~------~v~~~-a 403 (530)
T 1wa5_B 340 AGVLPALRLLL-----SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL----EVAEY------KTKKE-A 403 (530)
T ss_dssp TTHHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH----HHSCH------HHHHH-H
T ss_pred cchHHHHHHHH-----cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----hcCCH------HHHHH-H
Confidence 222222222 2346999999999999998743321000 0133333333 22222 24554 4
Q ss_pred HHHHHhhHHHHHhCcc---chH--HHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhc
Q 005008 510 ADVIGSYSKWISAFQT---NAR--PLLLFLAAGISE--AVSSNACASALRKICEDASA 560 (719)
Q Consensus 510 ~~~ig~y~~~~~~~p~---~L~--~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~ 560 (719)
++.|+.++......|+ ++. .+++.++..+.+ +.++..|+.+|.+++..+..
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 6999988775422112 221 256666666654 56899999999999987764
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.85 E-value=0.16 Score=55.57 Aligned_cols=329 Identities=11% Similarity=0.065 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCC---CChHHHHHHHHHHHhhcCCChhHHHHH-hhhhhH
Q 005008 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLC-RVPFLK 285 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~---~~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~ 285 (719)
...+..+.+.++.-+.... +-|.+.+.....++.+.+.|.. +++...|+-+|..+.+...+..+.+.. +.+
T Consensus 71 ~~~q~~a~~~~rklls~e~--~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI--- 145 (510)
T 3ul1_B 71 LESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI--- 145 (510)
T ss_dssp HHHHHHHHHHHHHHHTCSS--CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH---
T ss_pred HHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH---
Confidence 4566667777776665321 2344556677889999999973 356778999999988755443343432 111
Q ss_pred HHchhhhhhcCchhHHhHHHHHHHHHHHh---chHHHHhCChhHHHHHHHHHhhccCCCCCchhhhh-hH--HHHHHHHH
Q 005008 286 ELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADS-TL--QFWSTLAS 359 (719)
Q Consensus 286 ~~~~~~a~~~~d~e~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~-~~--~FW~~l~e 359 (719)
+.+. ..+.+++.+....-+..+..++.. +...+.+. ..+..++.+...+ +.+.... .. -.|. +..
T Consensus 146 p~Lv-~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-----G~i~~Ll~lL~~~--~~~~~~~~~~~~a~~~-L~n 216 (510)
T 3ul1_B 146 PAFI-SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-----GAIDPLLALLAVP--DLSTLACGYLRNLTWT-LSN 216 (510)
T ss_dssp HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTCSS--CGGGSCHHHHHHHHHH-HHH
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-----CChHHHHHHHHhc--cchhhhHHHHHHHHHH-HHH
Confidence 1221 244567777766666666666532 22223221 2244555555554 2221111 11 1111 111
Q ss_pred HHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchHH---
Q 005008 360 YILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--- 436 (719)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~~--- 436 (719)
+.. +... .... .....+++.+++-+..+. .+.|.....++.+++. +.+..
T Consensus 217 -l~~-~~~~----~~~~----~~~~~~lp~L~~LL~~~~---------------~~v~~~A~~aL~~L~~--~~~~~~~~ 269 (510)
T 3ul1_B 217 -LCR-NKNP----APPL----DAVEQILPTLVRLLHHND---------------PEVLADSCWAISYLTD--GPNERIEM 269 (510)
T ss_dssp -HHC-CCSS----CCCH----HHHHHHHHHHHHHTTCSC---------------HHHHHHHHHHHHHHTS--SCHHHHHH
T ss_pred -Hhh-cccc----hhHH----HHHHhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHHhh--chhhhHHH
Confidence 111 1000 0001 112234444444332110 1234444444444321 12211
Q ss_pred ------HHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHH-----HHHHHhccCchhhhhhHHHHH
Q 005008 437 ------IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM-----QLVAVLSASRSEELKGFMHIV 505 (719)
Q Consensus 437 ------l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~-----~ll~~l~~~~~~~~~~~~~l~ 505 (719)
+..+... . .+.+..-.+.++.+++.++.+-... ...+. ..+..+..++.+. ++
T Consensus 270 i~~~g~i~~Lv~l-L----~~~~~~v~~~al~aL~nl~~~~~~~-----~~~i~~~g~l~~L~~LL~~~~~~------v~ 333 (510)
T 3ul1_B 270 VVKKGVVPQLVKL-L----GATELPIVTPALRAIGNIVTGTDEQ-----TQKVIDAGALAVFPSLLTNPKTN------IQ 333 (510)
T ss_dssp HHTTTCHHHHHHH-H----TCSCHHHHHHHHHHHHHHTTSCHHH-----HHHHHHTTGGGGCC-CTTCSSHH------HH
T ss_pred HHhcccchhhhhh-h----cCCChhhhhHHHHHHHHhhcCCHHH-----HHHHhhccchHHHHHHhcCCCHH------HH
Confidence 1222222 2 2356778888999999886532210 01111 1122233444432 45
Q ss_pred HHHHHHHHHhhHHHHHhCccch--HHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcc----cCCCchHHHHHHHHHH
Q 005008 506 YRSLADVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNACASALRKICEDASAL----IDEPSNLEILMWIGEA 577 (719)
Q Consensus 506 ~~t~~~~ig~y~~~~~~~p~~L--~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~----l~~p~~~~~l~~~~~~ 577 (719)
.. ++++++..+..-..+.+.+ ..+++.++..+.+ ++++..|+.|+.+++..+... +.....++.|..+..
T Consensus 334 ~~-A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~- 411 (510)
T 3ul1_B 334 KE-ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS- 411 (510)
T ss_dssp HH-HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-
T ss_pred HH-HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-
Confidence 54 4699988765322222211 1355666666654 458999999999999765432 111123444444332
Q ss_pred HHhcCCChhhHHHHHHHHHHHHcc
Q 005008 578 LEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 578 l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
.-+.+.+..+++++..++..
T Consensus 412 ----~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 412 ----AKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp ----CSCHHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHHH
Confidence 22566778888888888754
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.17 Score=49.39 Aligned_cols=150 Identities=7% Similarity=0.098 Sum_probs=91.5
Q ss_pred ChhHHHHHHHHHHHhhhhcc-cCCc-ccchhH-HHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc--cch
Q 005008 453 PWKEVETKLFALNVVSEVVL-QEGQ-AFDFSV-IMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ--TNA 527 (719)
Q Consensus 453 ~W~~~Ea~L~~l~~i~e~~~-~~~~-~~~l~~-i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p--~~L 527 (719)
+-.-+++++.+++.+++++. ++-. .+ ... ++.++..+. +..+. |+.. +...+-.+++-....- .++
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y-~~~llp~ll~~l~-dkk~~------V~~a-a~~al~~i~~~~~~~~~~~~l 144 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDY-VSLVFTPLLDRTK-EKKPS------VIEA-IRKALLTICKYYDPLASSGRN 144 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHH-HHHHHHHHHHGGG-CCCHH------HHHH-HHHHHHHHHHHSCTTCTTCTT
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHH-HHHHHHHHHHHHc-CCCHH------HHHH-HHHHHHHHHHHccccccCCcH
Confidence 45667999999999999887 5443 33 223 333444443 33322 3332 2344444444321111 248
Q ss_pred HHHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhc---ccCCCchH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 528 RPLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNL-EILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 528 ~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~---~l~~p~~~-~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
+.+++-++.++.+ |.++..+...+.++++..+. .+. + ++ +.+......+.. .-+.+.|...+++++.+...
T Consensus 145 ~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~-~-~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 145 EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ-R-YLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH-H-HHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH-H-HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 8999999999987 45889999999999988763 221 1 23 322222222112 23667899999999999998
Q ss_pred CCchHHHHHHHHHH
Q 005008 602 VSNKELKNNLLARL 615 (719)
Q Consensus 602 ~p~~~~~~~~l~~l 615 (719)
++.... ..++..+
T Consensus 222 vG~~~~-~p~l~~L 234 (249)
T 2qk1_A 222 FGMNTF-VKTLEHL 234 (249)
T ss_dssp HCSGGG-HHHHHHS
T ss_pred hCHHHH-HHHHHHH
Confidence 887654 4555554
No 34
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.31 E-value=3.5 Score=43.46 Aligned_cols=297 Identities=14% Similarity=0.074 Sum_probs=164.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhc-C---------hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCC
Q 005008 12 AVHVLNHDTESCNRVAANQWLVQFQQ-T---------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (719)
Q Consensus 12 av~~ly~~~~~~~~~~A~~~L~~fq~-s---------~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l 81 (719)
.+..+-++.++..|..|-..|..+-. + ..+......+|.++ +..+|..|+.+|.+-...
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~vr~~a~~~L~~l~~~----- 137 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE------FEDVQEQAVWALGNIAGD----- 137 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHccC-----
Confidence 34444333377788888888887754 2 23566667777654 358999999999876543
Q ss_pred ChhhHHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-c--c---CCChHHHHHHHhhhccCCCchhHHHHHH
Q 005008 82 QSAAKDAL-LNALLVAAKRFSS--GPPQLLTQICLALSALILRA-V--E---HGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (719)
Q Consensus 82 ~~~~~~~L-r~~Ll~~l~~~~~--~~~~v~~kL~~ala~l~~~~-~--~---W~~~i~~li~~l~~~~~~~~~~~~~L~~ 152 (719)
.++.+..+ ...++..+...-. .+..++...+.+|+.+.... + . -...++.++..+.+. ++......+..
T Consensus 138 ~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~ 215 (450)
T 2jdq_A 138 STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWA 215 (450)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHH
Confidence 22223222 2234444443322 45789999999999888543 1 1 246778888777642 33334556666
Q ss_pred HhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccccccc
Q 005008 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (719)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~ 232 (719)
|..+.+.. ...+. .+.. ..++..+...+.. +...++..++.++..-.... .-
T Consensus 216 L~~l~~~~-----------~~~~~----~~~~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~---~~ 267 (450)
T 2jdq_A 216 LSYLSDGP-----------NDKIQ----AVID--AGVCRRLVELLMH--------NDYKVVSPALRAVGNIVTGD---DI 267 (450)
T ss_dssp HHHHTSSS-----------HHHHH----HHHH--TTTHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSC---HH
T ss_pred HHHHHCCC-----------cHHHH----HHHH--cCcHHHHHHHHCC--------CchhHHHHHHHHHHHHhhCC---hH
Confidence 66655421 11111 1111 1233444444442 23467788888877644311 00
Q ss_pred CcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHH
Q 005008 233 SQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (719)
Q Consensus 233 ~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~ 310 (719)
....+.....++.+.+.|.++ .++..|+.+|..+.....+..+.++.. ++.+.+. ..+.+++.+.....+..+..
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~-~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA--NIFPALI-SILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHH-HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHH-HHHhcCCHHHHHHHHHHHHH
Confidence 001123346788888888765 467889999988876443333333320 1122222 13445666777777777777
Q ss_pred HHHhc----hHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHH
Q 005008 311 IGQAA----PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (719)
Q Consensus 311 ~~e~~----~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e 359 (719)
++... ...+.+ ...++.|+.+...+ +.++...++.....+.+
T Consensus 345 l~~~~~~~~~~~l~~-----~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVE-----LGCIKPLCDLLTVM--DSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHCCHHHHHHHHH-----HTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH-----CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 75531 222221 23566777777764 56677666665555443
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.96 E-value=5.7 Score=43.96 Aligned_cols=356 Identities=12% Similarity=0.077 Sum_probs=170.8
Q ss_pred hHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCC--hHHHHHHHHH
Q 005008 187 PMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS--SFDVAIEVLV 264 (719)
Q Consensus 187 ~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~--~~~~a~~~l~ 264 (719)
+.++.-+.+++.+ ++..++..|..|+....... ++.+....+++.+.+.|.+++ +...|+.++.
T Consensus 120 ~~l~~~l~~~L~d--------~~~~VRk~A~~al~~i~~~~------p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 120 EYLCEPLRKCLKD--------EDPYVRKTAAVCVAKLHDIN------AQMVEDQGFLDSLRDLIADSNPMVVANAVAALS 185 (591)
T ss_dssp HHHHHHHHHHSSC--------SCHHHHHHHHHHHHHHHHSS------CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--------CChHHHHHHHHHHHHHHhhC------hhhcccccHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 4444445566553 23578999999999887742 233333468888888888654 5788999999
Q ss_pred HHhhcCCC-----hhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccC
Q 005008 265 ELVGRHEG-----LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAF 339 (719)
Q Consensus 265 eil~~~~~-----~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~ 339 (719)
++....++ +....+..++. .+.+.++-....+.+++..++. .++.....+++.++.+..+
T Consensus 186 ~i~~~~~~~~~~~l~~~~~~~Ll~--------~l~~~~~~~q~~il~~l~~l~~-------~~~~~~~~~l~~l~~~l~~ 250 (591)
T 2vgl_B 186 EISESHPNSNLLDLNPQNINKLLT--------ALNECTEWGQIFILDCLSNYNP-------KDDREAQSICERVTPRLSH 250 (591)
T ss_dssp HHTTSCCSCCSCCCHHHHHHHHHH--------HHHHCCHHHHHHHHHHHHTSCC-------CSHHHHHHHHHHHTTCSCS
T ss_pred HHHhhCCCccchhccHHHHHHHHH--------cCCCCCchHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHHcC
Confidence 98876532 11222222221 1112222221222232221110 0112345667777777776
Q ss_pred CCCCchhhhhhHHHHHHHHHHHhccchhhhh----h-hh------hhHHhhHHHHHHHHHHHHHHhccCCCCCC--CCCC
Q 005008 340 PSEDWEIADSTLQFWSTLASYILGLDASIAK----N-KK------HVEDMFFSVFSALLDALLLRAQVDESSFN--DDGM 406 (719)
Q Consensus 340 p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~----~-~~------~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~--~~~~ 406 (719)
+ +..|...+...+..+...+. .+.+... . .+ ......+-...+-+..+..+ .|.-... ....
T Consensus 251 ~--~~~V~~ea~~~i~~l~~~~~-~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~--~p~~~~~~~~~~~ 325 (591)
T 2vgl_B 251 A--NSAVVLSAVKVLMKFLELLP-KDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQK--RPEILKQEIKVFF 325 (591)
T ss_dssp S--TTHHHHHHHHHHHHSCCSCC-BTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHH--CCSTTTTCTTTTS
T ss_pred C--ChHHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--ChHHHHHHHHhhe
Confidence 5 45666666666655432110 0000000 0 00 00000111111111122221 3432100 0000
Q ss_pred CCCCchHHHHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHH
Q 005008 407 VDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQL 486 (719)
Q Consensus 407 ~d~~d~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~l 486 (719)
....|+ ..-|+...+++... ...+ .+..++..+.... ...+|.-+..++.+++.++...++. ....+..
T Consensus 326 ~~~~d~-~~Ir~~al~~L~~l---~~~~-nv~~iv~~L~~~l-~~~d~~~r~~~v~aI~~la~~~~~~-----~~~~v~~ 394 (591)
T 2vgl_B 326 VKYNDP-IYVKLEKLDIMIRL---ASQA-NIAQVLAELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQS-----AERCVST 394 (591)
T ss_dssp CCTTSC-HHHHHHHHHHHHHT---CCSS-THHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHH
T ss_pred eccCCh-HHHHHHHHHHHHHH---CChh-hHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhChhH-----HHHHHHH
Confidence 111233 55666665655433 2222 2233333222211 2356888888899999998866432 1344444
Q ss_pred HHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCc---CchHHHHHHHHHHHHHHhhcccC
Q 005008 487 VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE---AVSSNACASALRKICEDASALID 563 (719)
Q Consensus 487 l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~---~~v~~~Aa~al~~lc~~c~~~l~ 563 (719)
+..+..+... .++..+ ...++ .-+..+|+....++..+...+.+ |.+...++..+-.++ ..+.
T Consensus 395 Ll~ll~~~~~------~v~~e~-i~~l~---~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~----~~~~ 460 (591)
T 2vgl_B 395 LLDLIQTKVN------YVVQEA-IVVIR---DIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYA----ERID 460 (591)
T ss_dssp HHHHHHTCCH------HHHHHH-HHHHH---HHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC----TTCT
T ss_pred HHHHHcccch------HHHHHH-HHHHH---HHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHccc----cccc
Confidence 4343343332 133332 23333 34456777666667777777653 456555555554443 2322
Q ss_pred CCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCch
Q 005008 564 EPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (719)
Q Consensus 564 ~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~ 605 (719)
. ..+.+..++..+. .-+...|..++.+++.+....|..
T Consensus 461 ~--~~~~l~~l~~~~~--~~~~~vr~~~l~a~~Kl~~~~p~~ 498 (591)
T 2vgl_B 461 N--ADELLESFLEGFH--DESTQVQLTLLTAIVKLFLKKPSE 498 (591)
T ss_dssp T--HHHHHHHHSTTCS--SSCHHHHHHHHHHHHHHHTTCCST
T ss_pred C--HHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCchH
Confidence 1 2233333332211 225668999999999999888764
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.59 E-value=0.61 Score=45.03 Aligned_cols=147 Identities=11% Similarity=0.073 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHH
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl 531 (719)
.+-.-+++++.+++.++..+...-..+ .+.++..+.....++++ .+|.. ++.++.....-. .+..++
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~-~~~ilp~ll~~l~d~~~------~vr~~-a~~aL~~~~~~~-----~~~~ll 135 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNY-ASACVPSLLEKFKEKKP------NVVTA-LREAIDAIYAST-----SLEAQQ 135 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGGCCCH------HHHHH-HHHHHHHHHTTS-----CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCCCH------HHHHH-HHHHHHHHHHcC-----CHHHHH
Confidence 456678999999999998776432211 23344433333445543 25554 356766554321 267788
Q ss_pred HHHHHhcCc--CchHHHHHHHHHHHHHHhhcc-cCCCchHHHHHHH-HHHHHhcCCChhhHHHHHHHHHHHHccCCchHH
Q 005008 532 LFLAAGISE--AVSSNACASALRKICEDASAL-IDEPSNLEILMWI-GEALEKRHLPLEDEEEVVGAISLILGSVSNKEL 607 (719)
Q Consensus 532 ~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~-l~~p~~~~~l~~~-~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 607 (719)
+.++.++.+ |.++..+...+..+...+... ... .+++.++.. ...+. .-..+.|...+++++.+...++.+..
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~-~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNK-KLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH-HHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH-HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 888888886 558888888888876655322 222 244444433 33332 22567899999999999988876533
Q ss_pred HHHHHHHH
Q 005008 608 KNNLLARL 615 (719)
Q Consensus 608 ~~~~l~~l 615 (719)
..++..+
T Consensus 213 -~~~l~~L 219 (242)
T 2qk2_A 213 -TPLLADV 219 (242)
T ss_dssp -GGGGTTS
T ss_pred -HHHHHhc
Confidence 3444444
No 37
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.27 E-value=11 Score=44.36 Aligned_cols=357 Identities=7% Similarity=0.008 Sum_probs=154.3
Q ss_pred hHHHHHHHHHHHHHcccccccCcch-hcccchHHHHHHhcC----CCChHHHHHHHHHHH---hhcCCChhHHHHHhhhh
Q 005008 212 RNRKILRCLLSWVRAGCFTEISQGS-LAAHPLLNFVFNSLQ----VQSSFDVAIEVLVEL---VGRHEGLPQALLCRVPF 283 (719)
Q Consensus 212 l~~~~l~c~~sWi~~~~~~~~~~~~-~~~~~ll~~~~~~l~----~~~~~~~a~~~l~ei---l~~~~~~~~~l~~~~~~ 283 (719)
-++.++-++.++.+. ++... .....+++ ++..+. ++.++..++.++... +..+.++...+++.++.
T Consensus 480 ~~eaal~~l~~iae~-----~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 480 KLEACIYSFQSVAEH-----FGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR 553 (971)
T ss_dssp HHHHHHHHHHHTTTC-----------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----cChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 477888888887653 22211 11223555 333333 344567777776543 33333444444443332
Q ss_pred hHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhc
Q 005008 284 LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILG 363 (719)
Q Consensus 284 l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~ 363 (719)
.+ + ......-|..+..+++.....+. +.+..+++.++.+...+..+.+.....++.-..+...+
T Consensus 554 --------~l-~--~~v~~~A~~al~~l~~~~~~~l~---p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~-- 617 (971)
T 2x1g_F 554 --------GL-N--SSMSAQATLGLKELCRDCQLQLK---PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL-- 617 (971)
T ss_dssp --------HH-H--SSCHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS--
T ss_pred --------Hh-C--hHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC--
Confidence 12 1 23344456666666666555444 34556777777776664223344444444433333321
Q ss_pred cchhhhhhhhhhHHhhHHHHHHHHHHHHHHhcc-CCCCCCCCCCCCCCchHHHHHhHhhHH---HHHHHHhcCch-----
Q 005008 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQV-DESSFNDDGMVDLPDGLVQFRMNLVEL---LVDICQLLRSA----- 434 (719)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~-p~~~~~~~~~~d~~d~f~~~R~~~~d~---l~~~~~il~~~----- 434 (719)
+ .+...|++.++++.++.++.- -... ..+ ++ .+.++.+. +-.+...++..
T Consensus 618 -~----------~~~~~~~~~~ll~~l~~~l~~~~~~~---~~~----~~---~~~~~~~~l~~L~~~~~~l~~~~~~~~ 676 (971)
T 2x1g_F 618 -R----------PEEIPKYLDIIVSPCFEELQAICQAD---SKT----PA---ARIRTIFRLNMISTLFSSLNTDVDEQA 676 (971)
T ss_dssp -C----------TTHHHHHHHHHHHHHHHHHHHHHTC------C----HH---HHHHHHHHHHHHHHHHHHHTC------
T ss_pred -C----------HHHHHHHHHHHHHHHHHHHHHHHhcC---CCC----hh---hHHHHHHHHHHHHHHHhhcCCCcCccc
Confidence 1 122344555555555544431 1110 000 11 12222232 32222323321
Q ss_pred ----------HHHHHHHH---HhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHH-HhccCchhhhhh
Q 005008 435 ----------TFIQKVFF---GSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLSASRSEELKG 500 (719)
Q Consensus 435 ----------~~l~~~~~---~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~-~l~~~~~~~~~~ 500 (719)
.++..++. .+... ...+=.-+|.++.+++.++....++..++ ++.++..+. .+.+.+.+
T Consensus 677 ~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~v~e~~~~~~~~~~~~~~~~~~p~-l~~~~~~l~~~~~~~~~~---- 749 (971)
T 2x1g_F 677 TDQPIVQPVLLVMQRTMPIFKRIAEM--WVEEIDVLEAACSAMKHAITNLRSSFQPM-LQDLCLFIVASFQTRCCA---- 749 (971)
T ss_dssp -------CCHHHHHTTHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHC--CTH-HHHHHHHHHHHCC--CCH----
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHhhhhhcccc-HHHHHHHHHHHHhcCCch----
Confidence 11222221 11110 11234668999999999888776544333 555555443 33333322
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhCc-------cchHHHHHHHHHhcC---------cCchHHHHHHHHHHHHHHhhcccCC
Q 005008 501 FMHIVYRSLADVIGSYSKWISAFQ-------TNARPLLLFLAAGIS---------EAVSSNACASALRKICEDASALIDE 564 (719)
Q Consensus 501 ~~~l~~~t~~~~ig~y~~~~~~~p-------~~L~~vl~~l~~~l~---------~~~v~~~Aa~al~~lc~~c~~~l~~ 564 (719)
.. +++++...+=++.+| +++..+...++..+. +|+++...-.-+.++...|...+..
T Consensus 750 --~~-----l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~ 822 (971)
T 2x1g_F 750 --PT-----LEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED 822 (971)
T ss_dssp --HH-----HHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC
T ss_pred --HH-----HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC
Confidence 12 233333333333333 233444444444332 3456666555567777778776643
Q ss_pred Cch-HHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhh
Q 005008 565 PSN-LEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLI 627 (719)
Q Consensus 565 p~~-~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l~~~~ 627 (719)
++. ++.++.+. ..+... .......++.-+..+++.-+..+.....+.....+++..+-..+
T Consensus 823 s~~~l~~i~~~~~~~l~~~--~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~ 885 (971)
T 2x1g_F 823 KTLAYDRLVFYAQRGMTLP--ESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCV 885 (971)
T ss_dssp TTSCHHHHHHHHHHHHTSS--CSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHh
Confidence 334 55554443 333211 22223333334444443322222223455555556555554433
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.95 E-value=16 Score=41.89 Aligned_cols=248 Identities=13% Similarity=0.044 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------ChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHH
Q 005008 18 HDTESCNRVAANQWLVQFQQ----------TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~----------s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~ 87 (719)
.++|+..|..|-..|..+-+ .+++......+|..+. +.++|..|+.+|++ +..+ .+.+.
T Consensus 160 ~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~-----d~~vr~~Aa~aL~~-Ls~~-----~~~~~ 228 (780)
T 2z6g_A 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTSGTLHN-LSHH-----REGLL 228 (780)
T ss_dssp HCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHH-HHTS-----HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC-----CHHHHHHHHHHHHH-HhCC-----chhHH
Confidence 36788889899888888765 3456666667776442 35899999999998 4432 12222
Q ss_pred HH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc------CCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhc
Q 005008 88 AL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (719)
Q Consensus 88 ~L-r~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~~------W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE 159 (719)
.+ +...+..|..+. .+...++..-+.+|..++..... =...++.++..+.+. +.......+..|..+.-.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcC
Confidence 22 223444444433 34577888888888888765321 235677777777642 222234444455544321
Q ss_pred cccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcc
Q 005008 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (719)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~ 239 (719)
.++.|.. +.. ...+..|...+.... .......+..++....... -....+..
T Consensus 307 -----------~~e~~~~----i~~--~~~i~~Lv~lL~~~~-------~~~~~~~a~~aL~~Ls~~~----~~~~~i~~ 358 (780)
T 2z6g_A 307 -----------NQESKLI----ILA--SGGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCS----SNKPAIVE 358 (780)
T ss_dssp -----------CHHHHHH----HHT--TTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHHTST----THHHHHHH
T ss_pred -----------ChHHHHH----HHH--cCCHHHHHHHHhcCC-------HHHHHHHHHHHHHHhhcCh----HHHHHHHH
Confidence 1111111 111 122333444444321 1234445555555433210 01122344
Q ss_pred cchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCCh--hHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHh
Q 005008 240 HPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGL--PQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (719)
Q Consensus 240 ~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~--~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~ 314 (719)
...++.+...+.++ ++...|+.++..+....... ...+++.+.. .+..+|.+.....+..+..++..
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~--------lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHhC
Confidence 55677788888754 35677888888877654321 2223332221 33456777777777888777654
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=92.89 E-value=6.6 Score=37.29 Aligned_cols=220 Identities=16% Similarity=0.100 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChH----------HHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhccc
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA----------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~----------aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~ 78 (719)
|...+..|. ++++..|..|-..|..+-.... +......+|.++ +..++..|+..|.+-...
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIASG-- 74 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHcC--
Confidence 444454554 6678889999999998865432 566667777654 358999999999876542
Q ss_pred CCCChhhHHHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhc------cCCChHHHHHHHhhhccCCCchhHHHH
Q 005008 79 YYLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVL 150 (719)
Q Consensus 79 ~~l~~~~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~------~W~~~i~~li~~l~~~~~~~~~~~~~L 150 (719)
+++.+..+ +...+..+...- .++..++...+.+|+.+..... .-...++.++..+.+. ++......+
T Consensus 75 ---~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~ 149 (252)
T 4hxt_A 75 ---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAA 149 (252)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred ---ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH
Confidence 23333332 223445444332 4557899999999988874322 1235677788777653 333455666
Q ss_pred HHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHccccc
Q 005008 151 EMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (719)
Q Consensus 151 ~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~ 230 (719)
..|..+...- +..+.. +.. ..++..+...+.. ++..++..++.++.+-.....
T Consensus 150 ~~L~~l~~~~-----------~~~~~~----~~~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~-- 202 (252)
T 4hxt_A 150 RALANIASGP-----------DEAIKA----IVD--AGGVEVLVKLLTS--------TDSEVQKEAARALANIASGPT-- 202 (252)
T ss_dssp HHHHHHTTSC-----------HHHHHH----HHH--TTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSBH--
T ss_pred HHHHHHHcCC-----------HHHHHH----HHH--CcCHHHHHHHHCC--------CCHHHHHHHHHHHHHHHcCCH--
Confidence 6666554421 111111 111 3355555555553 234678888888876554210
Q ss_pred ccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcC
Q 005008 231 EISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (719)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~ 270 (719)
-....+.....++.+.+.+.++ +++..|+.+|..+....
T Consensus 203 -~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 203 -SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp -HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 0011234556778888887754 46778888888877644
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.61 E-value=8.2 Score=37.66 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=119.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHH
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~ 88 (719)
+...+..| .++|+..|..|-..|.++. ++++......+|..++ ..+|..|+..|... .. +.+....
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~~------~~vR~~A~~aL~~l-~~-----~~~~~~~ 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDKN------YIRRDIGAFILGQI-KI-----CKKCEDN 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSS------HHHHHHHHHHHHHS-CC-----CTTTHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCCC------HHHHHHHHHHHHHh-cc-----ccccchH
Confidence 45555555 4788889999999998876 7889999999997653 48999999998642 21 1122222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhcc-CCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhc--------
Q 005008 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-------- 159 (719)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~-W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE-------- 159 (719)
+...|.+.+. ...+..|+...+.+|+.+....+. .+..++.++..+++. ++.........|..+..+
T Consensus 91 l~~~L~~~~~--~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~~~~~L~~ 166 (280)
T 1oyz_A 91 VFNILNNMAL--NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKATIPLLIN 166 (280)
T ss_dssp HHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---CCHHHHHH
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2222222222 245577999898888887643321 234455555555432 111122223333322211
Q ss_pred -cccccccccCCChHHHHHHHHHHHh---chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcc
Q 005008 160 -VIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (719)
Q Consensus 160 -~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~ 235 (719)
+.+ -...-|......+.. ..+.++..+...+.. ++..++..++.++... +
T Consensus 167 ~l~d-------~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~A~~aL~~~---~-------- 220 (280)
T 1oyz_A 167 LLKD-------PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD--------KNEEVRIEAIIGLSYR---K-------- 220 (280)
T ss_dssp HHTC-------SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHT---T--------
T ss_pred HHcC-------CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHh---C--------
Confidence 111 122334444444433 256666667666653 2345677777665431 1
Q ss_pred hhcccchHHHHHHhcCCCChHHHHHHHHHHH
Q 005008 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVEL 266 (719)
Q Consensus 236 ~~~~~~ll~~~~~~l~~~~~~~~a~~~l~ei 266 (719)
....++.+...+.+++++..|+.++..+
T Consensus 221 ---~~~~~~~L~~~l~d~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 221 ---DKRVLSVLCDELKKNTVYDDIIEAAGEL 248 (280)
T ss_dssp ---CGGGHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred ---CHhhHHHHHHHhcCccHHHHHHHHHHhc
Confidence 1235667777778888888888877765
No 41
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=92.35 E-value=5.2 Score=39.93 Aligned_cols=168 Identities=11% Similarity=0.181 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhc-----C-CCChHH-HHHHHHHHHhhcCCCh----hHHHHH
Q 005008 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL-----Q-VQSSFD-VAIEVLVELVGRHEGL----PQALLC 279 (719)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l-----~-~~~~~~-~a~~~l~eil~~~~~~----~~~l~~ 279 (719)
.++..+|+-+..|++-.. .. ......+++.+++.. + .|+.++ ....++..++.+..+. +..++.
T Consensus 44 ~vKkeiLkLiet~i~~~~----d~-~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~ 118 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN----DP-QMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD 118 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS----CH-HHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----CH-HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 357778888888887421 11 112233444443322 2 345554 3667777777754432 333444
Q ss_pred hhhh-hHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCC-hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHH
Q 005008 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS-PEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (719)
Q Consensus 280 ~~~~-l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~-~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (719)
.+.. ..+++. .--++-+|...++.+++-++..+..+.+..-| +++..+++.++....|+ +++|++..+.--..+
T Consensus 119 ~VFe~TL~MI~--~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 119 AVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHHHHHS--STTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHH
Confidence 4432 112211 11145567888999999999988888777755 46788899999999997 799999888887777
Q ss_pred HHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 005008 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (719)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~ 394 (719)
.+.+.. .+ +...+.|+.+|..++..++.-+
T Consensus 195 l~n~~~-~~------~~~~~Fy~~fy~~il~~if~Vl 224 (321)
T 1w9c_A 195 LQNVAQ-EE------AAAQSFYQTYFCDILQHIFSVV 224 (321)
T ss_dssp HHHHHH-CH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-Ch------HHHHHHHHHHHHHHHHHHHHHH
Confidence 666532 11 2345666777777776665544
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.23 E-value=3.8 Score=39.22 Aligned_cols=227 Identities=14% Similarity=0.045 Sum_probs=125.1
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhH-HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 005008 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAK-DALLNALLVAAKRFS-SGPPQLLTQICLALS 116 (719)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~-~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~ala 116 (719)
+..|.....+|.+++ .+++.-|+..|++.+.. +.+.. ..+....+..+...- .++..++...+.+|.
T Consensus 11 ~~~~~~~~~~L~s~~------~~~~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 11 GSELPQMTQQLNSDD------MQEQLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79 (252)
T ss_dssp TCSHHHHHHHHHSSC------SSHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345666777887654 38999999999876664 12222 223333444444332 345778888888888
Q ss_pred HHHhhhc------cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHH
Q 005008 117 ALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVV 190 (719)
Q Consensus 117 ~l~~~~~------~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl 190 (719)
.++.... .....++.++..+.+. ++......+..|..|...- +.+...+. ...++
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~------~~~~i 140 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAVI------DAGAL 140 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHHH------HTTHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC-----------chHHHHHH------HCCCH
Confidence 8875322 1245677777777653 3344566677776664421 11111111 12345
Q ss_pred HHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhh
Q 005008 191 EFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (719)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~ 268 (719)
..+.+.+... +..++..++.++.+-..... -....+.....++.+.+.|.++ .+...|+.+|..+..
T Consensus 141 ~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 141 PALVQLLSSP--------NEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHGGGCS--------CHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCC--------CHHHHHHHHHHHHHHHcCCh---HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 5555666432 24678888888876543210 0001133466788888888754 467889999998886
Q ss_pred cCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHH
Q 005008 269 RHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (719)
Q Consensus 269 ~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~ 309 (719)
..+...+.+... +..+.+. ..+.+++.+....-+..+.
T Consensus 210 ~~~~~~~~~~~~--g~i~~L~-~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 210 GGNEQKQAVKEA--GALEKLE-QLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp SCHHHHHHHHHT--THHHHHH-TTTTCSSSHHHHTHHHHHH
T ss_pred CCHHHHHHHHHC--CcHHHHH-HHhCCCCHHHHHHHHHHHH
Confidence 544333333221 1112221 1344555555554444444
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.71 E-value=0.57 Score=43.86 Aligned_cols=140 Identities=15% Similarity=0.016 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccch--H
Q 005008 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--R 528 (719)
Q Consensus 451 ~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L--~ 528 (719)
+.++.-.+.++.+|+.++..-.+......-...+..+..+..++.+ .++.. ++++++..+..-..+.+.+ .
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~------~v~~~-a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE------QILQE-ALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------HHHHH-HHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH------HHHHH-HHHHHHHHhcCCcHHHHHHHHC
Confidence 3568888999999999985432211100000122223333333332 24554 4689988763211111111 1
Q ss_pred HHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 005008 529 PLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (719)
Q Consensus 529 ~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (719)
.+++.++..+.+ +.++..|+.++.++|..... .+.....++.|..+. ..+ +.+.+.....+++.+...-
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~--~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSP--NEQILQEALWALSNIASGG 169 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT---TCS--CHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH---cCC--CHHHHHHHHHHHHHHHcCC
Confidence 255666777765 45899999999999853322 111112344444443 222 5667889999999998753
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.58 E-value=31 Score=40.39 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHhhhhcccCCcccchhHHHHHH-HHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc---cchHH
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLV-AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ---TNARP 529 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll-~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p---~~L~~ 529 (719)
-...|.++.+++.+...+.+...++ ++.++..+ ......+.+ +++++++.+..-|+.++ .++..
T Consensus 699 ~~v~e~~~~~l~~~~~~~~~~~~~~-l~~~~~~l~~~~~~~~~~-----------~~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 699 AQVVEAVCAIFEKSVKTLLDDFAPM-VPQLCEMLGRMYSTIPQA-----------SALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTGGG-HHHHHHHHHHHHHHSCCH-----------HHHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccccccc-HHHHHHHHHHHHHcCCcc-----------HHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3678999999998887766443322 34443322 223332221 12344554444444432 23333
Q ss_pred HHHHHHH--------hcC-cCchHHHHHHHHHHHHHHhhcccCCCch-HHHHHHH-HHHHHhcCCChhhHHHHHHHHHHH
Q 005008 530 LLLFLAA--------GIS-EAVSSNACASALRKICEDASALIDEPSN-LEILMWI-GEALEKRHLPLEDEEEVVGAISLI 598 (719)
Q Consensus 530 vl~~l~~--------~l~-~~~v~~~Aa~al~~lc~~c~~~l~~p~~-~~~l~~~-~~~l~~~~l~~~~~~~l~eai~~v 598 (719)
+++.++. .+. +|+++...-..+..+++.|...+..++. ++.++.. ...+. ..+.......+..+..+
T Consensus 767 ~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~--~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 767 LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALK--FPEAPTVKASCGFFTEL 844 (963)
T ss_dssp HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3333332 232 4788999999999999999987754334 5555443 33332 22344555666666676
Q ss_pred HccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 005008 599 LGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (719)
Q Consensus 599 i~~~p~~~~~~~~l~~l~~p~~~~l~~~~~ 628 (719)
+...+........+.....+++..+-..+.
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 845 LPRCGEVESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp GGGTTSSCHHHHHTTTSHHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 665432122233444555555555555444
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=89.74 E-value=28 Score=38.57 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhHHHHHhCccchH-HHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHh
Q 005008 504 IVYRSLADVIGSYSKWISAFQTNAR-PLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580 (719)
Q Consensus 504 l~~~t~~~~ig~y~~~~~~~p~~L~-~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~ 580 (719)
+++.+ +|++|.|++.+...+...+ .++.++...+.. +.++..+-.|+.++...++. ..+.+..+.+....
T Consensus 496 li~~~-~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~------~~~~i~~~l~~~~~ 568 (621)
T 2vgl_A 496 LVKVG-GYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE------VKATIQDVLRSDSQ 568 (621)
T ss_dssp HHHHH-HHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHSSHHH
T ss_pred HHHHH-HHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH------HHHHHHHHHHHHhc
Confidence 44444 6999999999987654333 567777766654 55888889999998876542 23333333322122
Q ss_pred -cCCChhhHHHHHHHH
Q 005008 581 -RHLPLEDEEEVVGAI 595 (719)
Q Consensus 581 -~~l~~~~~~~l~eai 595 (719)
...+.+.|.+.++-.
T Consensus 569 ~~~~d~evrdRA~~y~ 584 (621)
T 2vgl_A 569 LKNADVELQQRAVEYL 584 (621)
T ss_dssp HSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 134555555555443
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.97 E-value=41 Score=39.44 Aligned_cols=160 Identities=8% Similarity=-0.061 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHh----ccCchhhhhhHHHHHHHHHHHHHHhhHHHHH--hCc-c-
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL----SASRSEELKGFMHIVYRSLADVIGSYSKWIS--AFQ-T- 525 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l----~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~--~~p-~- 525 (719)
|..+-++.-++..++....+ . . ++.+++++... ...+.+.+ ..+.+ ++..+|..++... ..+ .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~--~-v-~~~~l~~i~~~l~~~~~~~~~~w----~~rea-al~algaia~~~~~~~~~~~~ 445 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEV--L-V-TNIFLAHMKGFVDQYMSDPSKNW----KFKDL-YIYLFTALAINGNITNAGVSS 445 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHH--H-H-HHHHHHHHHHHHHHHHC----CH----HHHHH-HHHHHHHHHBSSCCBTTBCCC
T ss_pred cCcHHHHHHHHHHHHHHcch--h-H-HHHHHHHHHHHHHHhccCcchhH----HHHHH-HHHHHHHHHHHhccccCCccc
Confidence 44445666677777765541 1 1 34455544322 22222211 13444 4688888765421 111 1
Q ss_pred -----chHH-HHHHHHHhcCc-----CchHHHHHHHHHHHHHHhhcccCCCchHH-HHHHHHHHHHhcCCChhhHHHHHH
Q 005008 526 -----NARP-LLLFLAAGISE-----AVSSNACASALRKICEDASALIDEPSNLE-ILMWIGEALEKRHLPLEDEEEVVG 593 (719)
Q Consensus 526 -----~L~~-vl~~l~~~l~~-----~~v~~~Aa~al~~lc~~c~~~l~~p~~~~-~l~~~~~~l~~~~l~~~~~~~l~e 593 (719)
.+.+ ..+.++..+.+ |.++.+|+.++.++++... +.++. .+..+...+... +...+.....
T Consensus 446 ~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-----~~~l~~~l~~l~~~L~d~--~~~V~~~A~~ 518 (960)
T 1wa5_C 446 TNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-----KAQLIELMPILATFLQTD--EYVVYTYAAI 518 (960)
T ss_dssp BCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-----HHHHHHHHHHHHHHTTCS--CHHHHHHHHH
T ss_pred ccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-----HHHHHHHHHHHHHHhCCC--ChhHHHHHHH
Confidence 2333 33456666654 4589999999999987531 22332 233344433221 3446777778
Q ss_pred HHHHHHccCC-----chHHHHHHHHHHHHHHHHHHHhhhcc
Q 005008 594 AISLILGSVS-----NKELKNNLLARLLSSSYEAIGKLIDG 629 (719)
Q Consensus 594 ai~~vi~~~p-----~~~~~~~~l~~l~~p~~~~l~~~~~~ 629 (719)
++..++.... ..+.....+...+.++++.+-++++.
T Consensus 519 Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 519 TIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 8888776321 00000122344555556656565554
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=88.77 E-value=2 Score=42.86 Aligned_cols=139 Identities=10% Similarity=-0.004 Sum_probs=76.9
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCccc-chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCcc-ch-H
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAF-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-NA-R 528 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~-~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~-~L-~ 528 (719)
.+-.-.+.++++|+.++..-+...+.. ....+..++..+.+.+.+ .++.. +++.|+..+.-....++ +. .
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~------~v~~~-A~~ALsnl~~~~~~~~~~~~~~ 166 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD------TVRVK-ALFAISCLVREQEAGLLQFLRL 166 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH------HHHHH-HHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH------HHHHH-HHHHHHHHHcCCcHHHHHHHHC
Confidence 456778899999999886432111000 001233333333333332 14444 46888876642111111 22 1
Q ss_pred HHHHHHHHhcCc--CchHHHHHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 005008 529 PLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (719)
Q Consensus 529 ~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (719)
..++.|+..+.+ +.++..|+.++.++|..-.. .+.....++.|..+. ... +.+.+.....+++.++...
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL---~~~--d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV---RTE--HSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHH---TSC--CSTHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHH---cCC--ChhHHHHHHHHHHHHHhCC
Confidence 355566665654 56899999999999975221 121112334444433 222 5668999999999999874
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.36 E-value=9.1 Score=35.26 Aligned_cols=189 Identities=15% Similarity=0.040 Sum_probs=107.4
Q ss_pred ChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHH-HHHHHHHHHHh-cCCCHHHHHHHHHHH
Q 005008 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL-LNALLVAAKRF-SSGPPQLLTQICLAL 115 (719)
Q Consensus 38 s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~L-r~~Ll~~l~~~-~~~~~~v~~kL~~al 115 (719)
.+..+.....||.+++ .++|.-|+..|.+-... +++.+..+ ....+..+... ..++..++..-+.+|
T Consensus 10 ~~~~~~~l~~LL~s~~------~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD------QQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78 (210)
T ss_dssp ---CHHHHHHHTTCSC------HHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCC------HHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4556777888887653 48999999999876542 23333322 22344444432 235577888888888
Q ss_pred HHHHhhhc------cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHH
Q 005008 116 SALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (719)
Q Consensus 116 a~l~~~~~------~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (719)
+.++.... .....++.++..+.+. ++......+..|..+... .+..+.. +. ...+
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----------~~~~~~~----~~--~~~~ 139 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----------GNEQIQA----VI--DAGA 139 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-----------CHHHHHH----HH--HTTH
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcC-----------CHHHHHH----HH--HcCc
Confidence 88874322 1456788888888653 333445566666655541 1111111 11 1234
Q ss_pred HHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHh
Q 005008 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELV 267 (719)
Q Consensus 190 l~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil 267 (719)
+..|.+.+... +..++..++.++.+-..... -....+.....++.+.+.+.++ ++.+.|+.+|..+.
T Consensus 140 i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 140 LPALVQLLSSP--------NEQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHTTCS--------CHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCC--------CHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 55555555432 24678888888887665310 0011234456777777777744 46777777776553
No 49
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.14 E-value=18 Score=34.16 Aligned_cols=224 Identities=15% Similarity=0.092 Sum_probs=123.4
Q ss_pred HHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHH-HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhh
Q 005008 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA-LLNALLVAAKRFS-SGPPQLLTQICLALSALILRA 122 (719)
Q Consensus 45 ~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~-Lr~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~ 122 (719)
...+|.++ +.++|.-|+..|.+-...+ ++.+.. ++...+..+...- .++..++...+.+|+.++...
T Consensus 7 L~~~L~~~------~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 7 LVKLLTST------DSETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHTTCS------CHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCC------CHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 34556544 3489999999998776542 223322 2334455444432 355789999999998887542
Q ss_pred cc------CCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHH
Q 005008 123 VE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQ 196 (719)
Q Consensus 123 ~~------W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~ 196 (719)
.. -...++.++..+.+. ++......+..|..+...- +..+.. +.. ..++..+.+.
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~----~~~--~~~i~~L~~~ 136 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP-----------DEAIKA----IVD--AGGVEVLVKL 136 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSC-----------HHHHHH----HHH--TTHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC-----------HHHHHH----HHH--CCCHHHHHHH
Confidence 21 235677777777642 3334566667776665421 111111 111 2344555555
Q ss_pred hhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCChh
Q 005008 197 SDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLP 274 (719)
Q Consensus 197 l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~~ 274 (719)
+... +..++..++.++.+-.... .-....+.....++.+.+.+.++ +++..|+.+|..+....+...
T Consensus 137 l~~~--------~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 137 LTST--------DSEVQKEAARALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp TTCS--------CHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred HcCC--------CHHHHHHHHHHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 5432 3467888888888755421 00011234566788888888754 567888889888876443333
Q ss_pred HHHHH-hhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHH
Q 005008 275 QALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (719)
Q Consensus 275 ~~l~~-~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e 313 (719)
+.+.. +++ +.+. ..+.++|.+....-+..+..++.
T Consensus 206 ~~l~~~~~i---~~L~-~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 206 KAIVDAGGV---EVLQ-KLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHH---HHHH-HGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH---HHHH-HHHCCCcHHHHHHHHHHHHHHHc
Confidence 33321 111 1221 13445565555555555554443
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.38 E-value=39 Score=37.34 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcChHH----HHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHH
Q 005008 18 HDTESCNRVAANQWLVQFQQTDAA----WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNAL 93 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~s~~a----W~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~L 93 (719)
.++|+..|..|-..|-.+.. ++. -.....+|.++ +..+|--|+..+.+-.... ++... .+
T Consensus 117 ~~~n~~vr~lAL~~L~~i~~-~~~~~~l~~~l~~~L~~~------~~~VRk~A~~al~~l~~~~-----p~~v~----~~ 180 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMGS-SEMCRDLAGEVEKLLKTS------NSYLRKKAALCAVHVIRKV-----PELME----MF 180 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSC------CHHHHHHHHHHHHHHHHHC-----GGGGG----GG
T ss_pred CCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHC-----hHHHH----HH
Confidence 47788888889988888863 443 34455566543 3599999999998766543 11111 12
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhhc----cCCChHHHHHHHhh
Q 005008 94 LVAAKRF-SSGPPQLLTQICLALSALILRAV----EHGKPIEKLFYSLQ 137 (719)
Q Consensus 94 l~~l~~~-~~~~~~v~~kL~~ala~l~~~~~----~W~~~i~~li~~l~ 137 (719)
+..+... ...++.|+.-.+.+|..+.-..+ .+...++.++..+.
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~ 229 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILK 229 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 2222211 13345666555555555442221 23445566665543
No 51
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.04 E-value=7.2 Score=46.20 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcC------CCChHH-HHHHHHHHHhhcCCChhH----HHHH
Q 005008 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ------VQSSFD-VAIEVLVELVGRHEGLPQ----ALLC 279 (719)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~------~~~~~~-~a~~~l~eil~~~~~~~~----~l~~ 279 (719)
.++..+++-+..|+.-.. ..+ .....+++.+++.+- .|+.++ ....++..++.+...... .++.
T Consensus 726 ~ik~~il~l~~~~i~~~~----~~~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~ 800 (1023)
T 4hat_C 726 TIKKEILKLVETYISKAR----NLD-DVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQ 800 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCS----CHH-HHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC----CHH-HHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 355667777788887421 111 122333333333321 233443 355666666666543222 2333
Q ss_pred hhhh-hHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCCh-hHHHHHHHHHhhccCCCCCchhhhhhHHHHHHH
Q 005008 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (719)
Q Consensus 280 ~~~~-l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (719)
.+.. ..+.+. .--++.+|...++.+++..+.++....+..-|+ .+..+++.++..+.|+ ++++++..+.|-..+
T Consensus 801 ~vf~~Tl~mi~--~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~--~r~~~~~~l~~~~~l 876 (1023)
T 4hat_C 801 SVFECTLDMIN--KDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN--NRDVEVNGLQIALDL 876 (1023)
T ss_dssp HHHHHHHHHHS--SCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHH
Confidence 2221 111111 011456788899999999999999888887664 5678899999999997 789999999998888
Q ss_pred HHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 005008 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (719)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~ 394 (719)
.+.+...++ .+.....|+.+|..++..++.-+
T Consensus 877 l~~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~v~ 908 (1023)
T 4hat_C 877 VKNIERMGN-----VPFANEFHKNYFFIFVSETFFVL 908 (1023)
T ss_dssp HHHHHHHCS-----SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 776632211 12445667777877776665554
No 52
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.84 E-value=17 Score=35.28 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=81.1
Q ss_pred CchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHH-HHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhh
Q 005008 343 DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSV-FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV 421 (719)
Q Consensus 343 d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~-~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~ 421 (719)
+..+...++++-..+.+.+...+ ..+.++ ...+++.++.|+- |.. ..+|..+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~-----------y~~~~~ea~~~lP~LveKlG------------d~k---~~vR~~~r 153 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTE-----------TPMSQEEVSAFVPYLLLKTG------------EAK---DNMRTSVR 153 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----------CCCCHHHHHHHHHHHHHGGG------------CSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHhC------------CCh---HHHHHHHH
Confidence 56788888888777766552111 112222 3456777888872 112 34577788
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHH---HHHHHhccCchhhh
Q 005008 422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM---QLVAVLSASRSEEL 498 (719)
Q Consensus 422 d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~---~ll~~l~~~~~~~~ 498 (719)
+++..++.+.++..++..+...+ .+.+|+.+|.||..++++-+...... ...+ ..+..+.+++..
T Consensus 154 ~il~~l~~v~~~~~v~~~l~~g~-----ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~-- 221 (266)
T 2of3_A 154 DIVNVLSDVVGPLKMTPMLLDAL-----KSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDV-- 221 (266)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHGG-----GCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSH--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCH--
Confidence 88888888777666677776654 24569999999999998876432111 1122 344444555543
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 005008 499 KGFMHIVYRSLADVIGSYSKWI 520 (719)
Q Consensus 499 ~~~~~l~~~t~~~~ig~y~~~~ 520 (719)
.||.++ +.++...-...
T Consensus 222 ----~VR~aA-l~~lve~y~~~ 238 (266)
T 2of3_A 222 ----NVRNAA-INVLVACFKFE 238 (266)
T ss_dssp ----HHHHHH-HHHHHHHHHHH
T ss_pred ----HHHHHH-HHHHHHHHHHh
Confidence 366654 57776444433
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.54 E-value=11 Score=44.09 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCch---HHHHHHHHHhhcCCCCCCCh
Q 005008 378 MFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPW 454 (719)
Q Consensus 378 ~~~~~~~~Lv~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~---~~l~~~~~~~~~~~~~~~~W 454 (719)
...|++..+++.++..+. |+ + ..-|.........++..+.+. ..++.++..+.. +..|
T Consensus 88 ~~e~~~~~~~~~~~~~~~----------dk---~--~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~kw 148 (986)
T 2iw3_A 88 SVEPYIVQLVPAICTNAG----------NK---D--KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE----TNKW 148 (986)
T ss_dssp TTHHHHHTTHHHHHHHTT----------CS---S--HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH----CCCH
T ss_pred CcccchHHHHHHHHHHhc----------CC---c--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc----ccch
Confidence 346777777777766642 11 1 345665555566666666654 356667766542 3469
Q ss_pred hHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh------------
Q 005008 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA------------ 522 (719)
Q Consensus 455 ~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~------------ 522 (719)
|...++|-++..+++..+..-. ..+|.++..+.....+.++. |-. .+..++..+|.-+.+
T Consensus 149 ~~k~~~l~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~d~k~~------v~~-~~~~~~~~~~~~~~n~d~~~~~~~~~~ 220 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAKDQVA-LRMPELIPVLSETMWDTKKE------VKA-AATAAMTKATETVDNKDIERFIPSLIQ 220 (986)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHH-HHHHHHHHHHHHHTTCSSHH------HHH-HHHHHHHHHGGGCCCTTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HhccchhcchHhhcccCcHH------HHH-HHHHHHHHHHhcCCCcchhhhHHHHHH
Confidence 9999999999999987642111 11444444444444444432 111 123444444443321
Q ss_pred ---Ccc---------------------chHHHHHHHHHhcCcCc--hHHHHHHHHHHHHH------HhhcccCCCchHHH
Q 005008 523 ---FQT---------------------NARPLLLFLAAGISEAV--SSNACASALRKICE------DASALIDEPSNLEI 570 (719)
Q Consensus 523 ---~p~---------------------~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~------~c~~~l~~p~~~~~ 570 (719)
+|+ -|.-+++.|.+||..+. ..+.++.-+.++|+ +.+..+ |..+|.
T Consensus 221 ~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~ 298 (986)
T 2iw3_A 221 CIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPG 298 (986)
T ss_dssp HHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHH
T ss_pred HhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhH
Confidence 232 13455677778887643 67888888888883 233332 224444
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005008 571 LMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (719)
Q Consensus 571 l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (719)
+....+ ..-.++.|+..-.|+..+.
T Consensus 299 ~~~~~~----~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 299 LKSNFA----TIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHTT----TCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhh----ccCCHHHHHHHHHHHHHHH
Confidence 444332 2235666666666666554
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=86.53 E-value=38 Score=36.34 Aligned_cols=290 Identities=12% Similarity=0.066 Sum_probs=156.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---cCh--------HHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQ---QTD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq---~s~--------~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~ 77 (719)
|...|..++ +.|++.+.+|-+.++++- +.| .+-....++|..++ +..+|+-||-.|.+-..
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-----~~~lq~~Aa~aL~nias-- 130 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIAS-- 130 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHhc--
Confidence 778888886 678888888888888762 222 13555667776543 35899999999987543
Q ss_pred cCCCChhhHHHHHH-HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhhcc------CCChHHHHHHHhhhccCCC---chh
Q 005008 78 GYYLQSAAKDALLN-ALLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQD---NGN 146 (719)
Q Consensus 78 ~~~l~~~~~~~Lr~-~Ll~~l~~~-~~~~~~v~~kL~~ala~l~~~~~~------W~~~i~~li~~l~~~~~~~---~~~ 146 (719)
-+++....+.+ ..+..|... ..++..|+.+-+.+|..++..... -...++-++..+.....+. ...
T Consensus 131 ---~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 131 ---GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 24444444433 344444432 345678999999999998864321 2345556666664321000 012
Q ss_pred HHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHc
Q 005008 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (719)
Q Consensus 147 ~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~ 226 (719)
......|..++..-.. .... .....++..|.+.+... ...++..++.|+..-...
T Consensus 208 ~~a~~~L~nl~~~~~~-------~~~~----------~~~~~~lp~L~~LL~~~--------~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNP-------APPL----------DAVEQILPTLVRLLHHN--------DPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HHHHHHHHHHHCCCSS-------CCCH----------HHHHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhcccc-------hhHH----------HHHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhhc
Confidence 2334444444332110 0100 01234455556655542 245666676666543221
Q ss_pred ccccccCcc---hhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHchhhhhhcCchhH
Q 005008 227 GCFTEISQG---SLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKV 300 (719)
Q Consensus 227 ~~~~~~~~~---~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~~~~~~a~~~~d~e~ 300 (719)
+.+ .+.....++.+.+.|.++ .+...|+.++..+..........++. +++. .+. ..+.+.+.+.
T Consensus 263 ------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~---~L~-~LL~~~~~~v 332 (510)
T 3ul1_B 263 ------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA---VFP-SLLTNPKTNI 332 (510)
T ss_dssp ------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG---GCC--CTTCSSHHH
T ss_pred ------hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH---HHH-HHhcCCCHHH
Confidence 111 134556777777777755 45778888888887755433333332 2221 221 1344556666
Q ss_pred HhHHHHHHHHHHHhchH---HHHhCChhHHHHHHHHHhhccCCCCCchhhhhhH
Q 005008 301 IGGLACLMSEIGQAAPS---LIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (719)
Q Consensus 301 ~~~l~~l~~~~~e~~~~---~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~ 351 (719)
....|..+..++..... .+.+ ..+++.|+.+...+ +.++...+.
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~-----~g~i~~Lv~lL~~~--~~~v~~~Aa 379 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVN-----HGLVPFLVGVLSKA--DFKTQKEAA 379 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHH-----TTHHHHHHHHHHSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHh-----cCCHHHHHHHHcCC--CHHHHHHHH
Confidence 66666776666543222 1221 13455666666653 556655444
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.52 E-value=3.5 Score=39.51 Aligned_cols=138 Identities=16% Similarity=0.027 Sum_probs=77.5
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-ccch-HH
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNA-RP 529 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-p~~L-~~ 529 (719)
.+..-.+.++.+|+.++..-++......-...+..+..+..++.+ .++.. ++++++..+..-... .... ..
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~------~v~~~-a~~~L~~l~~~~~~~~~~~~~~~ 138 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE------QILQE-ALWALSNIASGGNEQIQAVIDAG 138 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH------HHHHH-HHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH------HHHHH-HHHHHHHhhcCCchHHHHHHHCC
Confidence 347778889999999886433211100000123333333344433 24554 468888886532222 1111 23
Q ss_pred HHHHHHHhcCcC--chHHHHHHHHHHHHHHhh---cccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 530 LLLFLAAGISEA--VSSNACASALRKICEDAS---ALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 530 vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~---~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
+++.+++.+.++ .++..|+.+|.++|.... ..+.....++.|..+. ..+ +.+.+.....+++.+...
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~--~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSP--NEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG---GCS--SHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH---CCC--CHHHHHHHHHHHHHHhcC
Confidence 677778877764 589999999999985322 2221112444444443 222 566788888899888754
No 56
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=85.88 E-value=63 Score=38.25 Aligned_cols=168 Identities=12% Similarity=0.192 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhc------CCCChHH-HHHHHHHHHhhcCCCh----hHHHHH
Q 005008 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFD-VAIEVLVELVGRHEGL----PQALLC 279 (719)
Q Consensus 211 ~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l------~~~~~~~-~a~~~l~eil~~~~~~----~~~l~~ 279 (719)
.++..+|+.+..|+.-.. ... .....+++.+++.+ +.|+.++ ....++..++.+.... ...++.
T Consensus 752 ~ik~eil~l~~~~i~~~~----~~~-~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~ 826 (1073)
T 3gjx_A 752 TVKRETLKLISGWVSRSN----DPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD 826 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCS----CHH-HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC----CHH-HHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 367788889999987421 111 12223333333322 2344433 3556666677654322 223443
Q ss_pred hhhh-hHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCCh-hHHHHHHHHHhhccCCCCCchhhhhhHHHHHHH
Q 005008 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (719)
Q Consensus 280 ~~~~-l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (719)
.++. ..+.+. .--++.+|...++.+++-++..+....+..-|. .+..+++.++..+.|+ ++++++..+.+-+.+
T Consensus 827 ~vf~~Tl~mi~--~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~--~r~i~~~~l~~~~~l 902 (1073)
T 3gjx_A 827 AVFECTLNMIN--KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHT--MRNVADTGLQILFTL 902 (1073)
T ss_dssp HHHHHHHHHHS--SCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHH
Confidence 3332 111111 111455788889999999999988887777554 5778899999999997 789999999998888
Q ss_pred HHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHh
Q 005008 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (719)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~ 394 (719)
.+.+.. .+ +.....|+.+|.+++..++.-+
T Consensus 903 l~~~~~-~~------~~~~~F~~~~~~~~~~~i~~v~ 932 (1073)
T 3gjx_A 903 LQNVAQ-EE------AAAQSFYQTYFCDILQHIFSVV 932 (1073)
T ss_dssp HHHHTT-CH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc-Ch------HHHHHHHHHHHHHHHHHHHHHH
Confidence 776632 11 2445667788888777666555
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.14 E-value=9.5 Score=44.47 Aligned_cols=209 Identities=12% Similarity=0.068 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCcc----chHH
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NARP 529 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~----~L~~ 529 (719)
=.-.+|+-.++.++...++++.-. ..++.++..+....+ ++ . ..+++.+++++.+ ..|+ .++.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~k--w~----~-k~~~l~~~~~~~~---~~~~~~~~~~~~ 175 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAIK---ALLPHLTNAIVETNK--WQ----E-KIAILAAFSAMVD---AAKDQVALRMPE 175 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHH---HHHHHHHHHHHHCCC--HH----H-HHHHHHHHHHHHH---HSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHhccccc--hH----H-HHHHHHHHHHHHH---HhHHHHHHhccc
Confidence 356789999999999988764321 223334444533222 22 1 2234788888775 3354 5788
Q ss_pred HHHHHHHhcCc--CchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc--CCch
Q 005008 530 LLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS--VSNK 605 (719)
Q Consensus 530 vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~--~p~~ 605 (719)
+++.+..++.| |+|+.+|-.++.++|.-....=..| ++|.|..... ++++ +-++|-.+.+. +..-
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~-~~~~~~~~~~-------~p~~---~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCIA-------DPTE---VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG-GHHHHHHHHH-------CTTH---HHHHHHHHTTCCCCSCC
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh-hHHHHHHHhc-------Chhh---hHHHHHHhhcCeeEeee
Confidence 88888899988 6799999999999996544332333 6776666653 2222 34444433332 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhHHHHHHHHHHhHhhhhhhhcccccCCCCCCCCCchHHHHHHHHH
Q 005008 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (719)
Q Consensus 606 ~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~f~~l~~~~~~~~~~~~p~~~~~~~~~ 685 (719)
+ .+.| .++-|++.+=- ....+ +.. +.++-.++-++.+ ++. +.-+.+++-++.
T Consensus 245 ~--~~~l-~~~~p~l~r~l---~~~~~------~~~-----r~~~~~~~n~~~l---v~~--------~~~~~~f~~~l~ 296 (986)
T 2iw3_A 245 T--PATL-SIMVPLLSRGL---NERET------GIK-----RKSAVIIDNMCKL---VED--------PQVIAPFLGKLL 296 (986)
T ss_dssp C--HHHH-HHHHHHHHHHH---TSSSH------HHH-----HHHHHHHHHHHTT---CCC--------HHHHHHHHTTTH
T ss_pred c--chhH-HHHHHHHHhhh---ccCcc------hhh-----eeeEEEEcchhhh---cCC--------HHHHhhhhhhhh
Confidence 1 2333 56677665422 11100 000 1122223333333 111 223567777788
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHh
Q 005008 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (719)
Q Consensus 686 p~l~~i~~~~~~~~~~vie~~c~~~~~~~~~ 716 (719)
|-++.+... ..|+++=|.+-++++...+.
T Consensus 297 p~~~~~~~~--~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 297 PGLKSNFAT--IADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHTTT--CCSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhc--cCCHHHHHHHHHHHHHHHHh
Confidence 888887763 57776666555555554443
No 58
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=84.11 E-value=32 Score=34.00 Aligned_cols=91 Identities=9% Similarity=-0.011 Sum_probs=56.1
Q ss_pred HHHHHhhHHHHHhCccch-HHHHHHHHH-hcCc--CchHHHHHHHHHHHHH---HhhcccCCCchHHHHHHHHHHHHhcC
Q 005008 510 ADVIGSYSKWISAFQTNA-RPLLLFLAA-GISE--AVSSNACASALRKICE---DASALIDEPSNLEILMWIGEALEKRH 582 (719)
Q Consensus 510 ~~~ig~y~~~~~~~p~~L-~~vl~~l~~-~l~~--~~v~~~Aa~al~~lc~---~c~~~l~~p~~~~~l~~~~~~l~~~~ 582 (719)
+..+..+.+-+..-..+. ...++.++. .|.+ +.++..|+.++.+++. .|+..+.....++.|+.+... .
T Consensus 61 l~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~----~ 136 (296)
T 1xqr_A 61 LELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR----D 136 (296)
T ss_dssp HHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----C
T ss_pred HHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc----C
Confidence 455555554332212222 235566777 7766 4589999999999984 455544322356666666542 2
Q ss_pred CChhhHHHHHHHHHHHHccCCc
Q 005008 583 LPLEDEEEVVGAISLILGSVSN 604 (719)
Q Consensus 583 l~~~~~~~l~eai~~vi~~~p~ 604 (719)
-+...+...+.+++.++..-++
T Consensus 137 ~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 137 ACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCcH
Confidence 2456788999999999876543
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.41 E-value=34 Score=33.06 Aligned_cols=145 Identities=9% Similarity=0.002 Sum_probs=87.1
Q ss_pred HHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHH-HhccCc
Q 005008 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLSASR 494 (719)
Q Consensus 416 ~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~-~l~~~~ 494 (719)
.|......|.. +|.+..+..+...+ .+.++.....++++|+.++.. ... .+.++.++. .+.+++
T Consensus 39 vr~~A~~~L~~----~~~~~~~~~L~~~l-----~d~~~~vR~~A~~aL~~l~~~----~~~--~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 39 KRISSARVLQL----RGGQDAVRLAIEFC-----SDKNYIRRDIGAFILGQIKIC----KKC--EDNVFNILNNMALNDK 103 (280)
T ss_dssp HHHHHHHHHHH----HCCHHHHHHHHHHH-----TCSSHHHHHHHHHHHHHSCCC----TTT--HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHc----cCCchHHHHHHHHH-----cCCCHHHHHHHHHHHHHhccc----ccc--chHHHHHHHHHHhcCC
Confidence 45555444433 34454566555543 234677888889999887641 111 345555553 234455
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q 005008 495 SEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM 572 (719)
Q Consensus 495 ~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~ 572 (719)
.+ .+|.. +++.+|.+.. .+|.+-+.+++.+...+.++ .++..|+.++.++.. +...+.|.
T Consensus 104 ~~------~vr~~-a~~aL~~l~~---~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~ 165 (280)
T 1oyz_A 104 SA------CVRAT-AIESTAQRCK---KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLI 165 (280)
T ss_dssp CH------HHHHH-HHHHHHHHHH---HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred CH------HHHHH-HHHHHHHHhc---cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 43 25555 4688887763 34556677888888888875 488999999887643 22455555
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH
Q 005008 573 WIGEALEKRHLPLEDEEEVVGAISLI 598 (719)
Q Consensus 573 ~~~~~l~~~~l~~~~~~~l~eai~~v 598 (719)
... . .-+...|.....++|.+
T Consensus 166 ~~l---~--d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 166 NLL---K--DPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHH---T--CSSHHHHHHHHHHHHHH
T ss_pred HHH---c--CCCHHHHHHHHHHHHhh
Confidence 443 2 12455788888888876
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.05 E-value=37 Score=30.74 Aligned_cols=134 Identities=12% Similarity=0.010 Sum_probs=76.8
Q ss_pred HHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCch
Q 005008 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (719)
Q Consensus 416 ~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~ 495 (719)
.|......+.. +|....+..+...+. +.+|.-+..++.+++.++.. . . ++.+... ..++.
T Consensus 30 vr~~A~~~L~~----~~~~~~~~~L~~~l~-----~~~~~vr~~a~~~L~~~~~~-----~-~-~~~L~~~----l~d~~ 89 (201)
T 3ltj_A 30 VRRAAAYALGK----IGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDE-----R-A-VEPLIKA----LKDED 89 (201)
T ss_dssp HHHHHHHHHHH----HCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCG-----G-G-HHHHHHH----TTCSS
T ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCH-----H-H-HHHHHHH----HcCCC
Confidence 35444444432 344334555555432 34677788888888877531 1 1 3334333 34444
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHHH
Q 005008 496 EELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMW 573 (719)
Q Consensus 496 ~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~ 573 (719)
+ .+|..+ ++.+|++. +++. ++.+...+.++ .++..|+.++.++.. +...+.|..
T Consensus 90 ~------~vr~~a-~~aL~~~~-----~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~ 145 (201)
T 3ltj_A 90 G------WVRQSA-AVALGQIG-----DERA----VEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIK 145 (201)
T ss_dssp H------HHHHHH-HHHHHHHC-----CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHH
T ss_pred H------HHHHHH-HHHHHHhC-----cHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHH
Confidence 3 255554 68888764 3443 44455566664 489999999988732 234555544
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHH
Q 005008 574 IGEALEKRHLPLEDEEEVVGAISLI 598 (719)
Q Consensus 574 ~~~~l~~~~l~~~~~~~l~eai~~v 598 (719)
+.. . -+...|...+++++.+
T Consensus 146 ~l~---d--~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 146 ALK---D--EDGWVRQSAADALGEI 165 (201)
T ss_dssp HTT---C--SSHHHHHHHHHHHHHH
T ss_pred HHc---C--CCHHHHHHHHHHHHHh
Confidence 432 1 2456788889998887
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.99 E-value=41 Score=30.69 Aligned_cols=135 Identities=12% Similarity=0.003 Sum_probs=77.6
Q ss_pred HHHhHhhHHHHHHHHhcCchHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCc
Q 005008 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR 494 (719)
Q Consensus 415 ~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~ 494 (719)
..|......+.. +|.+..+..+...+. +.+|.-...++.+|+.+++. . . ++.+... ..++
T Consensus 34 ~vR~~A~~~L~~----~~~~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~-----~-~-~~~L~~~----l~~~ 93 (211)
T 3ltm_A 34 YVRRAAAYALGK----IGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDE-----R-A-VEPLIKA----LKDE 93 (211)
T ss_dssp HHHHHHHHHHHH----HCCGGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCG-----G-G-HHHHHHH----TTCS
T ss_pred HHHHHHHHHHHH----hCCccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCH-----H-H-HHHHHHH----HcCC
Confidence 345544444432 344334555555432 34688888888888887631 1 1 2333333 3444
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q 005008 495 SEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILM 572 (719)
Q Consensus 495 ~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~ 572 (719)
.+ .+|..+ ++.+|++. .++ .++.+...+.++ .++..|+.++.++.. +...+.|.
T Consensus 94 ~~------~vr~~a-~~aL~~~~-----~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~ 149 (211)
T 3ltm_A 94 DG------WVRQSA-AVALGQIG-----DER----AVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLI 149 (211)
T ss_dssp SH------HHHHHH-HHHHHHHC-----CGG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHH
T ss_pred CH------HHHHHH-HHHHHHhC-----cHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHH
Confidence 43 255554 68888774 343 445566666664 489999999988731 23445444
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH
Q 005008 573 WIGEALEKRHLPLEDEEEVVGAISLI 598 (719)
Q Consensus 573 ~~~~~l~~~~l~~~~~~~l~eai~~v 598 (719)
.+. . .-+...|...+++++.+
T Consensus 150 ~~l---~--d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 150 KAL---K--DEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHT---T--CSSHHHHHHHHHHHHHH
T ss_pred HHH---c--CCCHHHHHHHHHHHHHh
Confidence 443 1 22456788888888887
No 62
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=77.05 E-value=1.1e+02 Score=34.96 Aligned_cols=446 Identities=14% Similarity=0.065 Sum_probs=210.4
Q ss_pred chhHHHHHhHHHHHHhhcccCCCCh-hhHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhc-------cCCChH
Q 005008 59 DFEVEFFAAQILKRKIQNEGYYLQS-AAKDALLNALLVAAKR-FSSGPPQLLTQICLALSALILRAV-------EHGKPI 129 (719)
Q Consensus 59 ~~~~~ffaA~tL~~ki~~~~~~l~~-~~~~~Lr~~Ll~~l~~-~~~~~~~v~~kL~~ala~l~~~~~-------~W~~~i 129 (719)
..++|.-++..|. |+. +.+-- ..++..++.+-+++.. +..+...-.-+-+.+++.++.-.+ ....++
T Consensus 217 ~~~~r~~~~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v 292 (810)
T 3now_A 217 TGSSSTIASVCLA-RIY---ENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGIL 292 (810)
T ss_dssp CTTHHHHHHHHHH-HHH---HTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHH
T ss_pred ChhHHHHHHHHHH-HHH---HHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchH
Confidence 4578888777664 333 22331 2233333333334432 223322222234566776664322 266888
Q ss_pred HHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcch
Q 005008 130 EKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQL 209 (719)
Q Consensus 130 ~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~ 209 (719)
+.++..+++. +.......++.+...+.. ...|..+++ . .+ ..|...+.+. .
T Consensus 293 ~~li~Ll~s~--~~~~q~~A~~al~~aa~~------------~~~R~~I~~----~--gv-~~L~~Ll~s~--------~ 343 (810)
T 3now_A 293 QMILAMATTD--DELQQRVACECLIAASSK------------KDKAKALCE----Q--GV-DILKRLYHSK--------N 343 (810)
T ss_dssp HHHHHHHHSS--CHHHHHHHHHHHHHHTTS------------HHHHHTTHH----H--HH-HHHHHHTTCS--------C
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHHcCC------------cHHHHHHHH----c--Cc-HHHHHHHcCC--------C
Confidence 8898888763 233345566666543321 222322222 1 12 5555555421 2
Q ss_pred hhhHHHHHHHHHHHHH-cccccccCc-chhcccchHHHHHHhcC----CCChHHHHHHHHHHHhhcCCC---hh--HHHH
Q 005008 210 HDRNRKILRCLLSWVR-AGCFTEISQ-GSLAAHPLLNFVFNSLQ----VQSSFDVAIEVLVELVGRHEG---LP--QALL 278 (719)
Q Consensus 210 ~~l~~~~l~c~~sWi~-~~~~~~~~~-~~~~~~~ll~~~~~~l~----~~~~~~~a~~~l~eil~~~~~---~~--~~l~ 278 (719)
..++..++-++...-. .+.-..++. +.....++++.+...|. +++....|+++|..+-..... +. ...+
T Consensus 344 ~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~I 423 (810)
T 3now_A 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchH
Confidence 3566667777765432 110000011 11112355665655555 446788899999887654321 11 1122
Q ss_pred HhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhch-----------------------------------HHHHhCC
Q 005008 279 CRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAP-----------------------------------SLIVEAS 323 (719)
Q Consensus 279 ~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~-----------------------------------~~l~~~~ 323 (719)
+.++. .+.++|.....+....+..+...+- ..+++
T Consensus 424 p~LV~--------LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-- 493 (810)
T 3now_A 424 HALMD--------LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-- 493 (810)
T ss_dssp HHHHH--------HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH--
T ss_pred HHHHH--------HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH--
Confidence 22222 1223344444445555555544220 11111
Q ss_pred hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHHHHHhccCCCCCCC
Q 005008 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFND 403 (719)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l~~k~~~p~~~~~~ 403 (719)
...++.|..+...+ +.++.+.+......+.. +.+ . +....+. ..+..|+..+ . +
T Consensus 494 ---aGaVp~LV~LL~s~--s~~vqe~Aa~aL~NLA~-----d~~-~--r~~Vv~~--Gaip~Lv~LL----~--s----- 547 (810)
T 3now_A 494 ---EGITTALCALAKTE--SHNSQELIARVLNAVCG-----LKE-L--RGKVVQE--GGVKALLRMA----L--E----- 547 (810)
T ss_dssp ---TTHHHHHHHHHTCC--CHHHHHHHHHHHHHHHT-----SHH-H--HHHHHHT--THHHHHHHHH----H--S-----
T ss_pred ---CcCHHHHHHHHcCC--CHHHHHHHHHHHHHHcC-----CHH-H--HHHHHHC--CCHHHHHHHH----c--c-----
Confidence 13567777777775 56777777665555442 111 0 1111110 1122222222 1 0
Q ss_pred CCCCCCCchHHHHHhHhhHHHHHHHHhcCchH---------HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhhhhcccC
Q 005008 404 DGMVDLPDGLVQFRMNLVELLVDICQLLRSAT---------FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (719)
Q Consensus 404 ~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~---------~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~i~e~~~~~ 474 (719)
++ ...|+..+-.+.+++.--.+.. .++.+.. ++. ...+=.....++++|+.++..-.+.
T Consensus 548 -~~-------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~-LL~---~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 548 -GT-------EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN-LLQ---QDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp -SC-------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH-TTS---TTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred -CC-------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH-HhC---CCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 00 1235555556666544322221 1222222 221 1122222334688999888753211
Q ss_pred Ccc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccch--HHHHHHHHHhcCc--CchHHH
Q 005008 475 GQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--RPLLLFLAAGISE--AVSSNA 546 (719)
Q Consensus 475 ~~~----~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L--~~vl~~l~~~l~~--~~v~~~ 546 (719)
... ..++.+..++ .++++. ++.. ++++|+..+.--.....+. ..+++.|+.-+.. ..++..
T Consensus 616 ~~~Ii~aG~l~~Lv~LL----~s~~~~------Vq~~-A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYL----MEDHLY------LTRA-AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp HHHHHHTTHHHHHHHHH----HSCCTT------HHHH-HHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----cCCCHH------HHHH-HHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence 000 0023333332 233322 4444 4688887764111111222 1366677766665 458999
Q ss_pred HHHHHHHHHHH----hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 547 CASALRKICED----ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 547 Aa~al~~lc~~----c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
|+.||.+++.. ++..+-....++.|..+.. . -+.+.+.....+++.+...
T Consensus 685 Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~---s--~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIA---N--PSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT---C--SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC---C--CCHHHHHHHHHHHHHHHhC
Confidence 99999999973 3333321346666666543 2 2667788999999999874
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=75.40 E-value=1.3e+02 Score=35.20 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=60.5
Q ss_pred cCchHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 005008 540 EAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSS 619 (719)
Q Consensus 540 ~~~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~ 619 (719)
+..++.+++.+|+++..--+..+. | +++.+....- .. .+..+....+.-+|.++.....+ . ...+..++.|+
T Consensus 714 ~~~irea~~~~~~r~i~~lg~~~~-p-~lp~~i~~ll--~~--~~~~e~~~fL~l~~qli~~f~~~-~-~~~l~~ll~~l 785 (980)
T 3ibv_A 714 NEDIRGAVRFTSGRIINVVGPDML-P-KVPQLISILL--NS--IDMNELVDVLSFISQLIHIYKDN-M-MEITNRMLPTL 785 (980)
T ss_dssp SHHHHHHHHHHHHHHTTTTHHHHT-T-THHHHHHHHH--HH--CCTTTHHHHHHHHHHHHHHTTTT-S-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccHhHH-H-HHHHHHHHHH--hc--CCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
Confidence 456899999999999876666654 4 6665554432 12 23455677778888888887776 4 68899999999
Q ss_pred HHHHHhhhcccC
Q 005008 620 YEAIGKLIDGDN 631 (719)
Q Consensus 620 ~~~l~~~~~~~~ 631 (719)
++++-+++++.+
T Consensus 786 ~~~if~~l~~~~ 797 (980)
T 3ibv_A 786 LMRIFSSLSAAP 797 (980)
T ss_dssp HHHHHHHTTC--
T ss_pred HHHHHHHhcCCC
Confidence 999999988754
No 64
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=74.92 E-value=91 Score=33.08 Aligned_cols=257 Identities=14% Similarity=0.045 Sum_probs=126.4
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHH------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005008 41 AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQICLA 114 (719)
Q Consensus 41 aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~~a 114 (719)
+......+|.++ +..+|..|+.+|.+-...+ +.+. ..-..|+..+.. ..+..++..-+.+
T Consensus 18 ~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~------~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 18 AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGT 83 (529)
T ss_dssp HHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSH------HHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCC------ccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 445555666543 3478888888887654321 1221 122233333332 2246677777777
Q ss_pred HHHHHhhhc-----cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHH
Q 005008 115 LSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (719)
Q Consensus 115 la~l~~~~~-----~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (719)
|..+..... .=...++.++..+++. ++......+..|..+...-. ..|..+. ...+
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-----------~~~~~i~------~~g~ 144 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKMAVR------LAGG 144 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCT-----------THHHHHH------HHTH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCc-----------chHHHHH------HcCC
Confidence 777653311 0125677777777652 23334556666665554311 1111111 1223
Q ss_pred HHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC---ChHHHHHHHHHHH
Q 005008 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVEL 266 (719)
Q Consensus 190 l~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~---~~~~~a~~~l~ei 266 (719)
+..|...+... ...++..+..++..|..-.. -....+.....++.+.+.+.++ .....++.++..+
T Consensus 145 i~~L~~ll~~~--------~~~~~~~~~~~L~~la~~~~---~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 145 LQKMVALLNKT--------NVKFLAITTDCLQILAYGNQ---ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp HHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--------CHHHHHHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 44455555432 24567778888888864210 0001122334455555555532 2445566666555
Q ss_pred hhcCCChhHHHHH-hhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCch
Q 005008 267 VGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWE 345 (719)
Q Consensus 267 l~~~~~~~~~l~~-~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~ 345 (719)
-. +++....+.. +. .+.+. ..+.+++.+.....+..+..++..... .......++.++.+...+ +.+
T Consensus 214 ~~-~~~~~~~~~~~g~---~~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~i~~L~~ll~~~--~~~ 281 (529)
T 1jdh_A 214 SV-CSSNKPAIVEAGG---MQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--DIN 281 (529)
T ss_dssp TT-STTHHHHHHHTTH---HHHHH-TTTTSSCHHHHHHHHHHHHHHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHH
T ss_pred hc-CcccHHHHHHCCC---HHHHH-HHHhCCChHHHHHHHHHHHHHhcCChh-----hHHHHhHHHHHHHHHcCC--CHH
Confidence 43 3333233321 11 11221 134455666667777777766544321 112345677777777664 566
Q ss_pred hhhhhHHH
Q 005008 346 IADSTLQF 353 (719)
Q Consensus 346 v~~~~~~F 353 (719)
+...+...
T Consensus 282 v~~~a~~~ 289 (529)
T 1jdh_A 282 VVTCAAGI 289 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 65
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=74.71 E-value=1.1e+02 Score=33.83 Aligned_cols=260 Identities=14% Similarity=0.046 Sum_probs=133.3
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHH------HHHHHHHHHHHHhcCCCHHHHHHHH
Q 005008 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD------ALLNALLVAAKRFSSGPPQLLTQIC 112 (719)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~ 112 (719)
..+......+|..+ +..+|..|+.+|.+-.... +.+. ..-..|+..+.. ..+..++..-+
T Consensus 13 ~g~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~------~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~ 78 (644)
T 2z6h_A 13 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTA 78 (644)
T ss_dssp TTTHHHHHHHHTCS------CHHHHHHHHHHHHHHHTST------THHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHH
T ss_pred hchHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCC------hhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHH
Confidence 34566777777644 3488888988888765432 1122 122233333331 12456777777
Q ss_pred HHHHHHHhhhc-----cCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchh
Q 005008 113 LALSALILRAV-----EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187 (719)
Q Consensus 113 ~ala~l~~~~~-----~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~ 187 (719)
.+|..+..... .=...++.++..+++. ++......+..|..|...-. ..+. .+. ..
T Consensus 79 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~-----------~~~~----~v~--~~ 139 (644)
T 2z6h_A 79 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQE-----------GAKM----AVR--LA 139 (644)
T ss_dssp HHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHST-----------THHH----HHH--HT
T ss_pred HHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcc-----------hhHH----HHH--HC
Confidence 77776553311 1125677777777552 23334555555555544211 0111 111 12
Q ss_pred HHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCC---hHHHHHHHHH
Q 005008 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQS---SFDVAIEVLV 264 (719)
Q Consensus 188 ~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~l~~~~---~~~~a~~~l~ 264 (719)
.++..|...+... ...+...+++|+..|..-. .-....+.....++.+.+.|.+.. ....++.++.
T Consensus 140 g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 140 GGLQKMVALLNKT--------NVKFLAITTDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208 (644)
T ss_dssp THHHHHHHGGGCC--------CHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHCcC--------CHHHHHHHHHHHHHHHhcC---cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455555555542 2356777788888887411 000112334456677777776543 4455666666
Q ss_pred HHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHHHhCChhHHHHHHHHHhhccCCCCCc
Q 005008 265 ELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDW 344 (719)
Q Consensus 265 eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~ 344 (719)
.+-. +......+... +..+.+. ..+.+.+.+.....+..+..++..... .......++.|+.+...+ +.
T Consensus 209 nLs~-~~~~~~~l~~~--g~l~~L~-~ll~~~~~~~~~~a~~~L~nL~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~ 277 (644)
T 2z6h_A 209 VLSV-CSSNKPAIVEA--GGMQALG-LHLTDPSQRLVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD--DI 277 (644)
T ss_dssp HHTT-CTTHHHHHHHT--THHHHHH-TTTTCSCHHHHHHHHHHHHHHGGGCTT-----CCSCHHHHHHHHHHTTCS--CH
T ss_pred HHhc-CcccHHHHHHC--CCHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcchh-----hhhhhhHHHHHHHHHcCC--CH
Confidence 5543 33333333221 1111221 134455667777777777777654321 112346677788877764 56
Q ss_pred hhhhhhHHH
Q 005008 345 EIADSTLQF 353 (719)
Q Consensus 345 ~v~~~~~~F 353 (719)
++.+.+..-
T Consensus 278 ~v~~~a~~a 286 (644)
T 2z6h_A 278 NVVTCAAGI 286 (644)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 66
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=72.86 E-value=1.1e+02 Score=32.92 Aligned_cols=293 Identities=12% Similarity=0.045 Sum_probs=153.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---cChH--------HHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcc
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQ---QTDA--------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq---~s~~--------aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~ 77 (719)
+...|..++ ++|++.+.+|-+.+.++- +.|. +-.....+|...+ +..+++-||..|.+-...
T Consensus 78 l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-----~~~~q~~Aa~aL~nia~~- 150 (529)
T 3tpo_A 78 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIASG- 150 (529)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-----CHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHcC-
Confidence 667787886 678888888888887753 2221 2334556675443 358999999999876542
Q ss_pred cCCCChhhHH-HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc------CCChHHHHHHHhhhccCCC---chh
Q 005008 78 GYYLQSAAKD-ALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQD---NGN 146 (719)
Q Consensus 78 ~~~l~~~~~~-~Lr~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~~------W~~~i~~li~~l~~~~~~~---~~~ 146 (719)
+.+... -+....+..|.... .++..++.+-+.+|..++...+. =...++-++..+.....+. ...
T Consensus 151 ----~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~ 226 (529)
T 3tpo_A 151 ----TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 226 (529)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHH
T ss_pred ----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHH
Confidence 333333 23333444444332 45578999999999988854321 1234555666554321000 012
Q ss_pred HHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHc
Q 005008 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (719)
Q Consensus 147 ~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~ 226 (719)
......|..++..-.. .... .....++..|.+.+... ...++..++.|+..-...
T Consensus 227 ~~a~~~L~nl~~~~~~-------~~~~----------~~~~~~lp~L~~LL~~~--------~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNP-------APPL----------DAVEQILPTLVRLLHHN--------DPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HHHHHHHHHHHCCCTT-------CCCH----------HHHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcccc-------hhhH----------HHHhhHHHHHHHHhcCC--------cHHHHHHHHHHHHHhhhh
Confidence 2334444444332110 0000 01234555566666542 245666677666543331
Q ss_pred ccccccCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCChhHHHHH-hhhhhHHHchhhhhhcCchhHHhH
Q 005008 227 GCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGG 303 (719)
Q Consensus 227 ~~~~~~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~~~~~~a~~~~d~e~~~~ 303 (719)
. .--...+.....++.+.+.|.++ .+...|+.++..++.........+.. +++.... ..+.+.+.+....
T Consensus 282 ~---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~----~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 282 P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP----SLLTNPKTNIQKE 354 (529)
T ss_dssp C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH----HHTTCSSHHHHHH
T ss_pred h---hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH----HHHcCCCHHHHHH
Confidence 1 00001134556777777878755 45778889998888655433333332 2222111 1334556666666
Q ss_pred HHHHHHHHHHhchH---HHHhCChhHHHHHHHHHhhccCCCCCchhhhhhH
Q 005008 304 LACLMSEIGQAAPS---LIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (719)
Q Consensus 304 l~~l~~~~~e~~~~---~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~ 351 (719)
.|..+..++..... .+.+ ..+++.|+.+...+ +.++...+.
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~-----~g~i~~Lv~lL~~~--~~~v~~~A~ 398 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVN-----HGLVPFLVGVLSKA--DFKTQKAAA 398 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH-----TTHHHHHHHHHHSS--CHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHh-----cCcHHHHHHHhcCC--CHHHHHHHH
Confidence 66666666443222 1221 13455566665553 455655444
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=72.65 E-value=21 Score=32.38 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHH
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLF 533 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~ 533 (719)
-+..=-.-|+++-|+..-++ . ++.++.=+..+...|... . +. ++++.||...+ +|+.|..|-|+-
T Consensus 121 ~kikIn~~yaLeeIaranP~----l-~~~v~rdi~smltskd~~-D-----kl-~aLnFi~alGe---n~~~yv~PfLpr 185 (253)
T 2db0_A 121 EKTKINVSYALEEIAKANPM----L-MASIVRDFMSMLSSKNRE-D-----KL-TALNFIEAMGE---NSFKYVNPFLPR 185 (253)
T ss_dssp HHHHHHHHHHHHHHHHHCHH----H-HHHHHHHHHHHTSCSSHH-H-----HH-HHHHHHHTCCT---TTHHHHGGGHHH
T ss_pred ccceecHHHHHHHHHHhChH----H-HHHHHHHHHHHhcCCChH-H-----HH-HHHHHHHHHhc---cCccccCcchHH
Confidence 33333345777766654331 1 455665444555544422 1 22 35788888773 678899999999
Q ss_pred HHHhcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 534 LAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 534 l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
++.-++|.+ |+..|..++-+++...++ .-.++....+.+. ..+...+..+.||++.++-.
T Consensus 186 L~aLL~D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~~--D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 186 IINLLHDGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEELN--DTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHGGGGCSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHCC--CSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHH
Confidence 999898854 899999999999864333 2233334443322 23455788999999988743
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=68.41 E-value=34 Score=40.67 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=69.7
Q ss_pred cCchhHHhHHHHHHHHHHHhchHHHHhCC-hhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhh
Q 005008 295 DGDEKVIGGLACLMSEIGQAAPSLIVEAS-PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (719)
Q Consensus 295 ~~d~e~~~~l~~l~~~~~e~~~~~l~~~~-~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~ 373 (719)
++++|....+..++..+..+++..+..-+ ..+..+++..+.+.++| +.++...++.||..+.+......+ .+
T Consensus 815 ~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~--~~~~~~~~l~~l~~l~~~~~~~~~-----~~ 887 (1049)
T 3m1i_C 815 TEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN--NRDVEVNGLQIALDLVKNIERMGN-----VP 887 (1049)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHHHHHHHHSCS-----CH
T ss_pred hhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHHHHHHHhcCC-----hH
Confidence 45778999999999999999998887633 34778889999999997 789999999999998876521111 01
Q ss_pred hhHHhhHHHHHHHHHHHHHHhc
Q 005008 374 HVEDMFFSVFSALLDALLLRAQ 395 (719)
Q Consensus 374 ~~~~~~~~~~~~Lv~~l~~k~~ 395 (719)
.....++.++..++..++.-+.
T Consensus 888 ~~~~f~~~~~~~l~~~~~~~l~ 909 (1049)
T 3m1i_C 888 FANEFHKNYFFIFVSETFFVLT 909 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2344556677777777766654
No 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.03 E-value=71 Score=29.00 Aligned_cols=177 Identities=18% Similarity=0.087 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHH
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~ 88 (719)
+...+..| .++|+..|..|-..|.++.. +++......+|.++ +..+|..|+..|...- +++....
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~aL~~~~-------~~~~~~~ 85 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQIG-------DERAVEP 85 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------CHHHHHHHHHHHHHHC-------CGGGHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC------CHHHHHHHHHHHHhhC-------CHHHHHH
Confidence 44555555 47889999999999988764 67888888888754 3489999999987532 1222222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhcc-ccc--cc
Q 005008 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEV-IDS--QA 165 (719)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE~-~~~--~~ 165 (719)
|+..+ ...++.|+...+.+|+.+. .+..++.++..+... ++.......+.|..+..+- ... +.
T Consensus 86 ----L~~~l---~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 86 ----LIKAL---KDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 151 (211)
T ss_dssp ----HHHHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred ----HHHHH---cCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22332 2345678777777776542 345677777766432 2222333444444333210 000 00
Q ss_pred cccCCChHHHHHHHHHHHh-chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHH
Q 005008 166 SDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSW 223 (719)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~-~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sW 223 (719)
.. .-....|......|.. ..+.++..|...+... +..++..+.+++...
T Consensus 152 l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--------~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 152 LK-DEDGWVRQSAADALGEIGGERVRAAMEKLAETG--------TGFARKVAVNYLETH 201 (211)
T ss_dssp TT-CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--------CHHHHHHHHHHHHC-
T ss_pred Hc-CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--------CHHHHHHHHHHHHhc
Confidence 00 0123345555555555 3466777777777642 246788888777654
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=59.31 E-value=15 Score=30.93 Aligned_cols=75 Identities=7% Similarity=0.091 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHH
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl 531 (719)
.+|.-+..++++++.+++. . . ++.+...+ .++.+ .+|..+ ++.+|++. . +.++
T Consensus 54 ~~~~vR~~A~~aL~~~~~~-----~-a-~~~L~~~L----~d~~~------~VR~~A-~~aL~~~~-----~----~~a~ 106 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDE-----R-A-VEPLIKLL----EDDSG------FVRSGA-ARSLEQIG-----G----ERVR 106 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSH-----H-H-HHHHHHHH----HHCCT------HHHHHH-HHHHHHHC-----S----HHHH
T ss_pred CCHHHHHHHHHHHHhcCCH-----H-H-HHHHHHHH----cCCCH------HHHHHH-HHHHHHhC-----c----HHHH
Confidence 5688888889988887641 1 0 23333333 23332 256654 58888765 2 3456
Q ss_pred HHHHHhcCc--CchHHHHHHHHHH
Q 005008 532 LFLAAGISE--AVSSNACASALRK 553 (719)
Q Consensus 532 ~~l~~~l~~--~~v~~~Aa~al~~ 553 (719)
+.+...+.+ +.|+..|+.||.+
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 666666665 4588888888754
No 71
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=53.83 E-value=93 Score=32.76 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=34.4
Q ss_pred HHHHHhhHHHHHhCccchHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHH
Q 005008 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (719)
Q Consensus 510 ~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~ 557 (719)
...|.+|. ++-|++-..+++.++.-..+.+ ++..|-+.|-.||.+
T Consensus 49 aQ~I~kff---k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 49 AQFIPKFF---KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp HHHHHHHG---GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred HHHHHHHH---hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 48888665 4458889999999998887754 677777777777765
No 72
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=52.80 E-value=2.6e+02 Score=30.59 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcChHHHH-H---HHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHH
Q 005008 18 HDTESCNRVAANQWLVQFQQTDAAWE-I---ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNAL 93 (719)
Q Consensus 18 ~~~~~~~~~~A~~~L~~fq~s~~aW~-~---~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~L 93 (719)
.++|+-.|.-|-..|-.+. +|+-.. + ...+|.+.+ .+..||--|+..+.+-.+.+-+.++.+ .+.+.+
T Consensus 121 ~~~n~~ir~lALr~L~~i~-~~e~~~~l~~~v~~~l~~~d----~~~~VRK~A~~al~kl~~~~p~~~~~~---~~~~~l 192 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVG-SREMAEAFAGEIPKILVAGD----TMDSVKQSAALCLLRLYRTSPDLVPMG---DWTSRV 192 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHC-CHHHHHHHTTHHHHHHHCSS----SCHHHHHHHHHHHHHHHHHCGGGCCCC---SCHHHH
T ss_pred CCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhChhhcCch---hHHHHH
Confidence 3778888888999988884 454222 2 233341111 245899999999887776544444321 223333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCCChHHHHHHHhh
Q 005008 94 LVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQ 137 (719)
Q Consensus 94 l~~l~~~~~~~~~v~~kL~~ala~l~~~~~-~W~~~i~~li~~l~ 137 (719)
...+ ...++.|+.-...++..+.-..+ .|...++.++..+.
T Consensus 193 ~~lL---~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~ 234 (621)
T 2vgl_A 193 VHLL---NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS 234 (621)
T ss_dssp HHHT---TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHH
T ss_pred HHHh---CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3333 23456676665556666654443 46667776666553
No 73
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=46.42 E-value=2.8e+02 Score=29.06 Aligned_cols=250 Identities=13% Similarity=0.034 Sum_probs=129.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcC----------hHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChh
Q 005008 15 VLNHDTESCNRVAANQWLVQFQQT----------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (719)
Q Consensus 15 ~ly~~~~~~~~~~A~~~L~~fq~s----------~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~ 84 (719)
.+..++|+..|..|-..|.++-.. +.+......+|..++ +.+++..|+.+|++-.. + ++
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-----~~~~~~~a~~~L~~ls~-~-----~~ 92 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTAGTLHNLSH-H-----RE 92 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHTT-S-----HH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHc-C-----ch
Confidence 344477888899999999887543 345555666665432 35899999999997332 1 22
Q ss_pred hHHHHH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc------CCChHHHHHHHhhhccCCCchhHHHHHHHhhh
Q 005008 85 AKDALL-NALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (719)
Q Consensus 85 ~~~~Lr-~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~~------W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l 156 (719)
.+..+. ...+..+..+- .+.+.++...+.+|..++..... -...++.++..+.+. +..........|..+
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 333222 22344444332 34567888888888888765321 135666777766542 222233334444444
Q ss_pred hhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcch
Q 005008 157 PEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (719)
Q Consensus 157 ~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~~~~~~ 236 (719)
... .++.+.. +... ..+..+.+.+.... .......+.+++.+-.... -....
T Consensus 171 a~~-----------~~~~~~~----i~~~--~~i~~L~~ll~~~~-------~~~~~~~a~~~L~~l~~~~----~~~~~ 222 (529)
T 1jdh_A 171 AYG-----------NQESKLI----ILAS--GGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCS----SNKPA 222 (529)
T ss_dssp HTT-----------CHHHHHH----HHHT--THHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTTST----THHHH
T ss_pred HhC-----------CHHHHHH----HHHC--CCHHHHHHHHHhCC-------hHHHHHHHHHHHHHHhcCc----ccHHH
Confidence 321 1111111 1111 12333333443321 1334555555554432210 01112
Q ss_pred hcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcCCC--hhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHH
Q 005008 237 LAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (719)
Q Consensus 237 ~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~~~--~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~ 312 (719)
+.....++.+.+.+.++ ++...++.++..+...... .....++.+.. .+.++|.+.....+..+..++
T Consensus 223 ~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~--------ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHH--------HHcCCCHHHHHHHHHHHHHHh
Confidence 34456777888887754 4566777777777654322 12222222211 334566676666777777665
Q ss_pred H
Q 005008 313 Q 313 (719)
Q Consensus 313 e 313 (719)
.
T Consensus 295 ~ 295 (529)
T 1jdh_A 295 C 295 (529)
T ss_dssp T
T ss_pred c
Confidence 4
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=44.62 E-value=1.3e+02 Score=28.77 Aligned_cols=138 Identities=9% Similarity=0.012 Sum_probs=74.5
Q ss_pred CCCChhHHHHHHHHHHHhhhhcccCCc--c-c-chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC--
Q 005008 450 VPIPWKEVETKLFALNVVSEVVLQEGQ--A-F-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-- 523 (719)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~i~e~~~~~~~--~-~-~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~-- 523 (719)
.+..|..+..++=.+..+-+....+.. . . .+..+..++.....+... .+... ++.++..+...+...
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~------~v~~~-al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV------VAQEQ-AIVALNSLIDAFASSSL 91 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH------HHHHH-HHHHHHHHHTTCC---C
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH------HHHHH-HHHHHHHHHHHhhhhhc
Confidence 457799999999888776554332111 0 0 022233444444455553 24444 367777666543221
Q ss_pred -----ccchHHHHHHHHH-hcCcCc--hHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 005008 524 -----QTNARPLLLFLAA-GISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAI 595 (719)
Q Consensus 524 -----p~~L~~vl~~l~~-~l~~~~--v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai 595 (719)
..+...+++.++. ++.++. ++..|..++..+++.|.. ....+..+...+. .-.+..+...+..+
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~~~l~--~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------ITQSVELVIPFFE--KKLPKLIAAAANCV 163 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS------SHHHHHHHGGGGG--CSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence 1345677888885 477754 677777888888765442 1111122222222 22456677777777
Q ss_pred HHHHccC
Q 005008 596 SLILGSV 602 (719)
Q Consensus 596 ~~vi~~~ 602 (719)
..++...
T Consensus 164 ~~~l~~f 170 (278)
T 4ffb_C 164 YELMAAF 170 (278)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777653
No 75
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=43.31 E-value=2.3e+02 Score=27.20 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=94.8
Q ss_pred hhHHHHHhHHHHHHhhcccCCCChhhHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhh
Q 005008 60 FEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK-RFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (719)
Q Consensus 60 ~~~~ffaA~tL~~ki~~~~~~l~~~~~~~Lr~~Ll~~l~-~~~~~~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~ 138 (719)
..-+.=|...|...+.. .++.....-+-++.|+. ++...+..|..+....|..++-.+ ..
T Consensus 60 ~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l--------------~~ 120 (266)
T 2of3_A 60 FKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELI--------------RD 120 (266)
T ss_dssp HHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH--------------Hh
Confidence 34455566667665543 23333344445677765 444556677777777776655332 21
Q ss_pred ccCCCchh-HHHHHHHhhhhhccccccccccCCChHHHHHHHHHHHh-----chhHHHHHHHHHhhcccCCCCCcchhhh
Q 005008 139 LQSQDNGN-MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLS-----HTPMVVEFLMQQSDKRFDGGVPVQLHDR 212 (719)
Q Consensus 139 ~~~~~~~~-~~~L~~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-----~~~~vl~~l~~~l~~~~~~~~~~~~~~l 212 (719)
. +.... .-.-.++-.|.|-++++ .+.-|..+++.+.. ....++..+...+.+. +...
T Consensus 121 ~--~y~~~~~ea~~~lP~LveKlGd~-------k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksK--------N~R~ 183 (266)
T 2of3_A 121 T--ETPMSQEEVSAFVPYLLLKTGEA-------KDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSK--------NARQ 183 (266)
T ss_dssp T--TCCCCHHHHHHHHHHHHHGGGCS-------SHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCS--------CHHH
T ss_pred c--cccchHHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccC--------CHHH
Confidence 1 01011 11233445556666653 22334444433322 2344777777777542 2467
Q ss_pred HHHHHHHHHHHHHcccccccCcchhcccchH---HHHHHhcCCC--ChHHHHHHHHHHHhhcC
Q 005008 213 NRKILRCLLSWVRAGCFTEISQGSLAAHPLL---NFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (719)
Q Consensus 213 ~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll---~~~~~~l~~~--~~~~~a~~~l~eil~~~ 270 (719)
+..++.++.+-++-. +++. ...+ +.+...++|+ +++++|..|++++...-
T Consensus 184 R~e~l~~l~~li~~~---G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 184 RSECLLVIEYYITNA---GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHHHHH---CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 888999999888642 2332 1234 7777888865 47999999999987653
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.56 E-value=2e+02 Score=25.59 Aligned_cols=175 Identities=18% Similarity=0.091 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccCCCChhhHHH
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~~l~~~~~~~ 88 (719)
....|..| .++|+..|..|-..|.++.. +++......+|.++ +..+|..|+..|...- +++....
T Consensus 16 ~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~~L~~~~-------~~~~~~~ 80 (201)
T 3ltj_A 16 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQIG-------DERAVEP 80 (201)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------SHHHHHHHHHHHHHHC-------CGGGHHH
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcCC------CHHHHHHHHHHHHhhC-------CHHHHHH
Confidence 45556565 47899999999999988764 56777777888644 3489999998887531 1222222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCChHHHHHHHhhhccCCCchhHHHHHHHhhhhhc-cccc--cc
Q 005008 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--QA 165 (719)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~ala~l~~~~~~W~~~i~~li~~l~~~~~~~~~~~~~L~~L~~l~EE-~~~~--~~ 165 (719)
|+..+ ...++.|+...+.+|+.+. -+..++.++..+... ++.......+.|..+... .... ..
T Consensus 81 ----L~~~l---~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 146 (201)
T 3ltj_A 81 ----LIKAL---KDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 146 (201)
T ss_dssp ----HHHHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred ----HHHHH---cCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22222 2345678777777776542 345667777766432 222233344444433321 0000 00
Q ss_pred cccCCChHHHHHHHHHHHh-chhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHH
Q 005008 166 SDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLL 221 (719)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~-~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~ 221 (719)
.. .-....|......|.. ..+.++..|...+... +..++..+.+++.
T Consensus 147 l~-d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~--------~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 147 LK-DEDGWVRQSAADALGEIGGERVRAAMEKLAETG--------TGFARKVAVNYLE 194 (201)
T ss_dssp TT-CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--------CHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence 00 0122344444555544 3456666676666542 2456666666554
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=39.45 E-value=96 Score=31.37 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCccc--chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchH-
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAF--DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR- 528 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~--~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~- 528 (719)
.+....|.++.+++.++...++..... .-..+..++..+. .+.+... ..++.. +++++...+.++..+++.-.
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~-~~~~~~~--~~v~~~-A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNT--LAIIES-GGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT-CCCSSSC--CHHHHH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc-cCCCccc--HHHHHH-HHHHHHHHHhhccCCHHHHHH
Confidence 346778888888888776332211100 0012232333332 2211000 013333 35777776665444443222
Q ss_pred ----HHHHHHHHhcCcC--chHHHHHHHHHHHHH---HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005008 529 ----PLLLFLAAGISEA--VSSNACASALRKICE---DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (719)
Q Consensus 529 ----~vl~~l~~~l~~~--~v~~~Aa~al~~lc~---~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (719)
..++.++.-|.++ +++..|+.++.+++. +.+..+.....++.|..+.. . -+...+.....++..+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~---s--~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---S--KHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT---C--SSHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh---C--CCHHHHHHHHHHHHHHH
Confidence 3567777777664 489999999999983 23333221123343433321 1 14456777778888887
Q ss_pred ccCCch
Q 005008 600 GSVSNK 605 (719)
Q Consensus 600 ~~~p~~ 605 (719)
..-|..
T Consensus 334 ~~~~~~ 339 (354)
T 3nmw_A 334 ANRPAK 339 (354)
T ss_dssp TTCCGG
T ss_pred cCCHHH
Confidence 765543
No 78
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=39.10 E-value=4.8e+02 Score=29.63 Aligned_cols=331 Identities=10% Similarity=-0.016 Sum_probs=146.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhhcCCChhHHHHHhhhhhHHHchhhhhhcCchhHHhHHHHHHHHHHHhchHHH---
Q 005008 243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLI--- 319 (719)
Q Consensus 243 l~~~~~~l~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~a~~~~d~e~~~~l~~l~~~~~e~~~~~l--- 319 (719)
+..+++.-.++++.-+|+.++.++...++.-...++. .++. +.+. ..+..++++....-|.++-.+.+++...-
T Consensus 54 ~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (810)
T 3now_A 54 VASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLT-ELGV-PWFM-RVLDQKHENCVSTAQFCLQTILNALSGLKNKP 130 (810)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-HSCH-HHHH-HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHH-HcCH-HHHH-HHHcCCCHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3344444456788899999999999887543333332 1111 1222 13345666666666665544444332111
Q ss_pred ---------HhCChhHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhccchhhhhhhhhhHHhhHHHHHHHHHHH
Q 005008 320 ---------VEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDAL 390 (719)
Q Consensus 320 ---------~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~Lv~~l 390 (719)
.++......++..|+.....+...-.....+++- +...+...+.. .+.++ ....-+.+++.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~----~~~~~-~~~~g~~~~l~v~ 202 (810)
T 3now_A 131 DSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIEL---ITRNVHYTALE----WAERL-VEIRGLCRLLDVC 202 (810)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH---HHHHTTCTTTT----HHHHH-HHTTHHHHHHHHH
T ss_pred ccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHH---HHHhCCccccc----cccch-hhHhhHHHHHHHH
Confidence 1122234555666666555432111222333333 22222111100 01111 1112244444443
Q ss_pred HHHhccCCCCCCCCCCCCCCchHHHHHhHhhHHHHHHHHhcCchH---HHHHHHHHhhcCCCCCCChh-HHHHHHHHHHH
Q 005008 391 LLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT---FIQKVFFGSWGSANVPIPWK-EVETKLFALNV 466 (719)
Q Consensus 391 ~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~il~~~~---~l~~~~~~~~~~~~~~~~W~-~~Ea~L~~l~~ 466 (719)
- ..|+-...+..+- -.+.|..++-++...|.-++.+. .+...+.......-...+-. .+.| .+++.+
T Consensus 203 ~---~~~~~~~~~~~~~-----~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~alt~ 273 (810)
T 3now_A 203 S---ELEDYKYESAMDI-----TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRV-TVAITA 273 (810)
T ss_dssp T---CCSSSCCSSCCCC-----CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH-HHHHHH
T ss_pred h---cCccccccccCCC-----ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHH-HHHHHH
Confidence 2 2222100001110 12457777778888888887541 22222222110000111222 3333 566666
Q ss_pred hhhhcccCCcccc-hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccc-hHHHHHHHHHhcCc--Cc
Q 005008 467 VSEVVLQEGQAFD-FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTN-ARPLLLFLAAGISE--AV 542 (719)
Q Consensus 467 i~e~~~~~~~~~~-l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~-L~~vl~~l~~~l~~--~~ 542 (719)
+..+........- -...+..+..+..++... ++.. +++.+|..+.--. .-++ ...-++.|...+.. +.
T Consensus 274 i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~------~q~~-A~~al~~aa~~~~-~R~~I~~~gv~~L~~Ll~s~~~~ 345 (810)
T 3now_A 274 LLNGPLDVGNQVVAREGILQMILAMATTDDEL------QQRV-ACECLIAASSKKD-KAKALCEQGVDILKRLYHSKNDG 345 (810)
T ss_dssp HHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH------HHHH-HHHHHHHHTTSHH-HHHTTHHHHHHHHHHHTTCSCHH
T ss_pred HhcCCHHHHHHHHhccchHHHHHHHhCCCCHH------HHHH-HHHHHHHHcCCcH-HHHHHHHcCcHHHHHHHcCCCHH
Confidence 6655443211100 011222222333333321 3333 3588887554311 1122 22223666665554 35
Q ss_pred hHHHHHHHHHHHHHHh---hc-ccCCCchHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHcc
Q 005008 543 SSNACASALRKICEDA---SA-LIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGS 601 (719)
Q Consensus 543 v~~~Aa~al~~lc~~c---~~-~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (719)
++..|+.+|.++.... .+ ......-.+.+. .+...|.++..+.+.+...++|++++...
T Consensus 346 vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 346 IRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409 (810)
T ss_dssp HHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 7888888888886422 11 111111123333 33333344334667899999999999654
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=33.96 E-value=1e+02 Score=31.15 Aligned_cols=137 Identities=13% Similarity=0.049 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHhhhhcccCCccc----chhHHHHHHHHh----cc-CchhhhhhHHHHHHHHHHHHHHhhHHHHHhCc
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAF----DFSVIMQLVAVL----SA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~----~l~~i~~ll~~l----~~-~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p 524 (719)
=..+..++.+|+.++..- +..+.. .++.++.++..- .. ..+.. . .++..+ ++.+...+.--..+.
T Consensus 46 ~~~~~~A~~aL~nls~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~-~---~~q~~A-a~aL~nLa~~~~~~k 119 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS-I---TLRRYA-GMALTNLTFGDVANK 119 (354)
T ss_dssp GGTHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHH-H---HHHHHH-HHHHHHHTSSCHHHH
T ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCC-H---HHHHHH-HHHHHHHHcCCHHHH
Confidence 345667889998887531 110000 134455544210 00 01110 1 244443 588877763211122
Q ss_pred cc---hHHHHHHHHHhcCc--CchHHHHHHHHHHHHH----HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 005008 525 TN---ARPLLLFLAAGISE--AVSSNACASALRKICE----DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAI 595 (719)
Q Consensus 525 ~~---L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~----~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai 595 (719)
.. ...+++.|++-|.. ++++..|+.+|++++. +++..+....-++.|..+.. . .-+.+.+.....++
T Consensus 120 ~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~---~-~~~~~~~~~A~~aL 195 (354)
T 3nmw_A 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL---E-VKKESTLKSVLSAL 195 (354)
T ss_dssp HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH---H-CCCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh---c-CCCHHHHHHHHHHH
Confidence 22 24568888888875 4689999999999985 24444322234555655432 1 11445566667777
Q ss_pred HHHHc
Q 005008 596 SLILG 600 (719)
Q Consensus 596 ~~vi~ 600 (719)
..+..
T Consensus 196 ~nLs~ 200 (354)
T 3nmw_A 196 WNLSA 200 (354)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77754
No 80
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=32.15 E-value=5.3e+02 Score=28.06 Aligned_cols=218 Identities=15% Similarity=0.088 Sum_probs=121.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcChH---------HHHHHHHhhcCCCCCCCcchhHHHHHhHHHHHHhhcccC
Q 005008 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY 79 (719)
Q Consensus 9 v~~av~~ly~~~~~~~~~~A~~~L~~fq~s~~---------aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ki~~~~~ 79 (719)
+...+..|.+++++..+..|-..|..+-+.++ +......+|.++ +..+++.|+.+|.+-....
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~nL~~~~-- 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP------VDSVLFYAITTLHNLLLHQ-- 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS------SHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHhCc--
Confidence 44555556545578888888888888776554 344555666544 3589999999999876542
Q ss_pred CCChhhHHHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhc------cCCChHHHHHHHhhhccCCCchhHHHHH
Q 005008 80 YLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALSALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLE 151 (719)
Q Consensus 80 ~l~~~~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~ala~l~~~~~------~W~~~i~~li~~l~~~~~~~~~~~~~L~ 151 (719)
++.+..+ +...+..+...- .++..++...+.+|..++.... .=...++.++..+.+.. .....+..+.
T Consensus 130 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~ 205 (644)
T 2z6h_A 130 ---EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSR 205 (644)
T ss_dssp ---TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred ---chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHH
Confidence 2233333 344555454432 3444565555667777765211 11245677777775431 1122345555
Q ss_pred HHhhhhhccccccccccCCChHHHHHHHHHHHhchhHHHHHHHHHhhcccCCCCCcchhhhHHHHHHHHHHHHHcccccc
Q 005008 152 MLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTE 231 (719)
Q Consensus 152 ~L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~~l~~~~l~c~~sWi~~~~~~~ 231 (719)
+|..|... + .-| ..+... .++..+...+... ...++..++.++.+-....
T Consensus 206 ~L~nLs~~-----------~-~~~----~~l~~~--g~l~~L~~ll~~~--------~~~~~~~a~~~L~nL~~~~---- 255 (644)
T 2z6h_A 206 VLKVLSVC-----------S-SNK----PAIVEA--GGMQALGLHLTDP--------SQRLVQNCLWTLRNLSDAA---- 255 (644)
T ss_dssp HHHHHTTC-----------T-THH----HHHHHT--THHHHHHTTTTCS--------CHHHHHHHHHHHHHHGGGC----
T ss_pred HHHHHhcC-----------c-ccH----HHHHHC--CCHHHHHHHHhcC--------CHHHHHHHHHHHHHHhhcc----
Confidence 66555421 0 111 122221 2344444444431 2456777887777654431
Q ss_pred cCcchhcccchHHHHHHhcCCC--ChHHHHHHHHHHHhhcC
Q 005008 232 ISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (719)
Q Consensus 232 ~~~~~~~~~~ll~~~~~~l~~~--~~~~~a~~~l~eil~~~ 270 (719)
+ ........++.+.+.|.++ +++..|+.+|..+....
T Consensus 256 -~-~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 256 -T-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp -T-TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -h-hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 1 1112346778888888744 56788888888887654
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=30.40 E-value=2.7e+02 Score=30.22 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCc--CchHHHHHHHHHHHHH----HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHccC
Q 005008 529 PLLLFLAAGISE--AVSSNACASALRKICE----DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (719)
Q Consensus 529 ~vl~~l~~~l~~--~~v~~~Aa~al~~lc~----~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~ 602 (719)
..++.|++.|.. ++++..|+.||.+|+. +++..+....-++.|..+... .-+.+.+..+..++..+.. .
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s----~~~~~~~e~aa~aL~nLS~-~ 164 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK----ARDMDLTEVITGTLWNLSS-H 164 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH----CCSHHHHHHHHHHHHHHTT-S
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC----CCCHHHHHHHHHHHHHHhC-C
Confidence 466777777765 4599999999999984 455554333356666666542 1134456777767766654 2
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 005008 603 SNKELKNNLLARLLSSSYEA 622 (719)
Q Consensus 603 p~~~~~~~~l~~l~~p~~~~ 622 (719)
+. .+......-+.+++..
T Consensus 165 ~~--~k~~I~~~alp~Lv~L 182 (584)
T 3l6x_A 165 DS--IKMEIVDHALHALTDE 182 (584)
T ss_dssp GG--GHHHHHHHTHHHHHHH
T ss_pred ch--hhHHHHhccHHHHHHH
Confidence 22 2233334445555543
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.61 E-value=1.4e+02 Score=31.48 Aligned_cols=143 Identities=12% Similarity=0.060 Sum_probs=73.6
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCccc--chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchH-
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAF--DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR- 528 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~--~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~- 528 (719)
.+....|.++-+++.++...+...... .-..+..++..+. ++.+... ..++.. +++++...+.++..+++.-.
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~-~~~~~~~--~~v~~~-A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT-YRSQTNT--LAIIES-GGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT-CCCSSST--THHHHH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc-CCCCcch--HHHHHH-HHHHHHHHHhcccCCHHHHHH
Confidence 457778888888888776332211100 0011222333332 2211000 013333 35777777765555554322
Q ss_pred ----HHHHHHHHhcCcC--chHHHHHHHHHHHHH---HhhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005008 529 ----PLLLFLAAGISEA--VSSNACASALRKICE---DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (719)
Q Consensus 529 ----~vl~~l~~~l~~~--~v~~~Aa~al~~lc~---~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (719)
..++.++.-|.++ +++..|+.++.+++. +++..+.....++.|..+. .. -+.+.+.....++..+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL---~s--~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI---HS--KHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT---TC--SSHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---hC--CCHHHHHHHHHHHHHHH
Confidence 3567777777654 489999999999983 2333221111223333322 11 14456777777777777
Q ss_pred ccCC
Q 005008 600 GSVS 603 (719)
Q Consensus 600 ~~~p 603 (719)
..-|
T Consensus 450 ~~~p 453 (458)
T 3nmz_A 450 ANRP 453 (458)
T ss_dssp TCCS
T ss_pred cCCH
Confidence 6544
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=27.31 E-value=5.1e+02 Score=30.96 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhHHHHHhCc--cchHHHHHHHHHhcCcCchHHHHHHHHHHHHHH
Q 005008 504 IVYRSLADVIGSYSKWISAFQ--TNARPLLLFLAAGISEAVSSNACASALRKICED 557 (719)
Q Consensus 504 l~~~t~~~~ig~y~~~~~~~p--~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~ 557 (719)
++.. ++.++++|..|+..+- +.-...++.++..+.+++++..|..+|..++..
T Consensus 223 l~~~-aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 223 VGVA-ALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp HHHH-HHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTC
T ss_pred HHHH-HHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhC
Confidence 4444 4799999999974311 111247777888888899999999999999853
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=24.42 E-value=4.2e+02 Score=28.70 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhcCc--CchHHHHHHHHHHHHHH---hhcccCCCchHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 005008 526 NARPLLLFLAAGISE--AVSSNACASALRKICED---ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (719)
Q Consensus 526 ~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~---c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (719)
+-.+.++.++..|.. +.++..|+.++.++|.. .+..+....-++.|..+.. ++ +.+.+.....+++.+..
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~---s~--~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD---HP--KKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG---CS--SHHHHHHHHHHHHHHTS
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC---CC--CHHHHHHHHHHHHHHHc
Confidence 444455556666654 56899999999999942 2333321224555555542 22 46678888888888875
Q ss_pred c
Q 005008 601 S 601 (719)
Q Consensus 601 ~ 601 (719)
.
T Consensus 120 ~ 120 (584)
T 3l6x_A 120 G 120 (584)
T ss_dssp S
T ss_pred c
Confidence 3
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=23.93 E-value=1.6e+02 Score=24.26 Aligned_cols=51 Identities=25% Similarity=0.077 Sum_probs=35.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCcchhHHHHHhHHHHH
Q 005008 15 VLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKR 72 (719)
Q Consensus 15 ~ly~~~~~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaA~tL~~ 72 (719)
.+..++|+..|..|-..|-++. .+++......+|..++ ..||..|+..|..
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d~~------~~VR~~A~~aL~~ 99 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLEDDS------GFVRSGAARSLEQ 99 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHHCC------THHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 3344777888888887777765 4667777777776443 3788888777754
No 86
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=23.57 E-value=2e+02 Score=30.02 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=62.8
Q ss_pred HHHHHhhHHHHHhCcc---ch--HHHHHHHHHhcCc--CchHHHHHHHHHHHH---HHhhcccCCCchHHHHHHHHHHHH
Q 005008 510 ADVIGSYSKWISAFQT---NA--RPLLLFLAAGISE--AVSSNACASALRKIC---EDASALIDEPSNLEILMWIGEALE 579 (719)
Q Consensus 510 ~~~ig~y~~~~~~~p~---~L--~~vl~~l~~~l~~--~~v~~~Aa~al~~lc---~~c~~~l~~p~~~~~l~~~~~~l~ 579 (719)
++.++.++. .++. .+ ...++.+++.|.+ ++++..|+.+|++++ .+++..+.....++.|..+...
T Consensus 23 ~~~L~~l~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~-- 97 (457)
T 1xm9_A 23 AYYIQHTCF---QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR-- 97 (457)
T ss_dssp HHHHHHHTS---SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred HHHHHHHHc---CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh--
Confidence 477777652 2222 11 2456777777765 458999999999998 4455544322356666666531
Q ss_pred hcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHH
Q 005008 580 KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (719)
Q Consensus 580 ~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~l~~p~~~~l 623 (719)
.-+.+.++....+++.+... +..+ ...++..+.+++.-+
T Consensus 98 --~~~~~~~~~a~~aL~nLa~~-~~~~--~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 98 --TGNAEIQKQLTGLLWNLSST-DELK--EELIADALPVLADRV 136 (457)
T ss_dssp --CCCHHHHHHHHHHHHHHHTS-SSTH--HHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHHHhcC-HHhH--HHHHhccHHHHHHHH
Confidence 12556788888899988876 3332 223335555555544
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=22.52 E-value=4.4e+02 Score=28.59 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHH
Q 005008 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLF 533 (719)
Q Consensus 454 W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~ 533 (719)
=.-+|+|--+|+++ -.++.+ + ..+.+++..+ ..+. + .+|... +--+ +|. ...-.-++.+++.
T Consensus 242 APVRETaAQtLGaL-~hLp~e---~--~IL~qLV~~l-~~~~--W----EVRHGG-LLGL-KYL---~DLL~~Ld~Vv~a 303 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP---N--DIIEQLVGFL-DSGD--W----QVQFSG-LIAL-GYL---KEFVEDKDGLCRK 303 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS---C--CHHHHHTTGG-GCSC--H----HHHHHH-HHHH-HHT---GGGCCCHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh---H--HHHHHHHhhc-CCCC--e----eehhhh-HHHH-HHH---HHHHHHHHHHHHH
Confidence 44679999999998 666543 2 3344444322 2222 2 256653 2233 344 2111128999999
Q ss_pred HHHhcCcCc--hHHHHHHHHHHHH
Q 005008 534 LAAGISEAV--SSNACASALRKIC 555 (719)
Q Consensus 534 l~~~l~~~~--v~~~Aa~al~~lc 555 (719)
++.||.+++ |+..||.++.-++
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999864 9999999988776
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=22.40 E-value=3e+02 Score=27.71 Aligned_cols=67 Identities=6% Similarity=-0.031 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHHHHHHHhcCcC--chHHHHHHHHHHHHH
Q 005008 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICE 556 (719)
Q Consensus 480 l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl~~l~~~l~~~--~v~~~Aa~al~~lc~ 556 (719)
++.+...+.....+.++ .||.+++ -++. +.+..+|+.....++-+-..+.++ -|+.+|-.++..+++
T Consensus 137 ~~~l~~~lk~~L~d~~p------yVRk~A~-l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVP------SVSSSAL-VSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHHHTCSSH------HHHHHHH-HHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCH------HHHHHHH-HHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 45566666555555554 2555543 2322 445567777776666666666653 366666666666654
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=22.00 E-value=94 Score=31.47 Aligned_cols=92 Identities=4% Similarity=-0.008 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHHhhhhcccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCccchHHHH
Q 005008 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (719)
Q Consensus 452 ~~W~~~Ea~L~~l~~i~e~~~~~~~~~~l~~i~~ll~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~~~~~p~~L~~vl 531 (719)
.+-...--+.+.+..+++. + ++. + .+...+..=.++|.+- +|. .+++++++.. .|+.++.+.
T Consensus 80 ~d~~lKrLvYLyl~~~~~~-~--~e~--i-Lv~Nsl~kDl~~~N~~------iR~-lALRtL~~I~-----~~~m~~~l~ 141 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI-A--EDV--I-IVTSSLTKDMTGKEDS------YRG-PAVRALCQIT-----DSTMLQAIE 141 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT-S--SCG--G-GGHHHHHHHHHSSCHH------HHH-HHHHHHHHHC-----CTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-H--HHH--H-HHHHHHHhhcCCCcHh------HHH-HHHHHHhcCC-----CHHHHHHHH
Confidence 4444444455555555554 1 111 2 2333333333455541 343 3467887663 689999999
Q ss_pred HHHHHhcCc--CchHHHHHHHHHHHHHHhhcc
Q 005008 532 LFLAAGISE--AVSSNACASALRKICEDASAL 561 (719)
Q Consensus 532 ~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~ 561 (719)
+++-+++.| |-|+..|+-+..+++...+..
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV 173 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH
Confidence 999999987 559999999999888655543
Done!