BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005009
(719 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/689 (64%), Positives = 512/689 (74%), Gaps = 22/689 (3%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGXXXXXXXXXXXXANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G + K +YLKPIQTG+P DSD
Sbjct: 27 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 86
Query: 90 SRFLFTKLPSLSLRRNFPXXXXXXXXXXXXXXXXXXXXXXXRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P + L + S M LNF
Sbjct: 87 SRFVFSKLDSLSLRRQIPISISNSVLHSSLPAA--------KSLGLNVEVSESGMCSLNF 138
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 139 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 192
Query: 210 ESESESERGKMEILCIVETXXXXXXXXXXXXLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VET LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 193 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 250
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRXXXXXXXXXXQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+ +D S+DL+EWF ES
Sbjct: 251 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 310
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 311 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 370
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 371 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 430
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 431 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 486
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 487 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 546
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 547 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSKKR 718
LLTGG++PLA TLAT+AVFDSF GDSK +
Sbjct: 665 LLTGGMVPLAVTLATDAVFDSFSGDSKLK 693
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/687 (62%), Positives = 500/687 (72%), Gaps = 22/687 (3%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGXXXXXXXXXXXXANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G + K +YLKPIQTG+P DSD
Sbjct: 27 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 86
Query: 90 SRFLFTKLPSLSLRRNFPXXXXXXXXXXXXXXXXXXXXXXXRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P + L + S LNF
Sbjct: 87 SRFVFSKLDSLSLRRQIPISISNSVLHSSLPAA--------KSLGLNVEVSESGXCSLNF 138
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++
Sbjct: 139 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQXIEKCLKEEX 192
Query: 210 ESESESERGKMEILCIVETXXXXXXXXXXXXLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VET LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 193 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 250
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRXXXXXXXXXXQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+ +D S+DL+EWF ES
Sbjct: 251 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 310
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK +LA ER++RL K AGE+FWWP+TQHKLV +E VTVIDSRCGENFS+
Sbjct: 311 GVFKALKETXVLANLERLERLNGXAKLAGEVFWWPYTQHKLVHQETVTVIDSRCGENFSI 370
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+ GYTAARFGHV FPENVYEPAL+CA
Sbjct: 371 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREXGYTAARFGHVXFPENVYEPALKCA 430
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALK AFRKF DH +F EK I +KV
Sbjct: 431 ELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDH----NFCEATEEEKHIVVKV 486
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGA EAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 487 IALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 546
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 547 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGG H VDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 605 HGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSK 716
LLTGG +PLA TLAT+AVFDSF GDSK
Sbjct: 665 LLTGGXVPLAVTLATDAVFDSFSGDSK 691
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 133/313 (42%), Gaps = 76/313 (24%)
Query: 402 FDACASWWTQ-------GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454
DA +SWWT D L +L R M HVMF +EPA A+LL+
Sbjct: 83 LDAMSSWWTAIHGHGHPALDQALTTQL-RVMN-------HVMFGGLTHEPAARLAKLLVD 134
Query: 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514
G + +FSD+GS ++E+A KMA + + G+ K +++ +G
Sbjct: 135 ITPAGLDT-VFFSDSGSVSVEVAAKMALQYWR----------GRGLPGK---RRLMTWRG 180
Query: 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574
YHGDT AM P+ G +S W L +++ V
Sbjct: 181 GYHGDTFLAMSIC--DPHGGM---------------------HSLWTDVLAAQVFAPQVP 217
Query: 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634
D YS+ L Q+ +G + A+++EPVV AGG
Sbjct: 218 R-------------------DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGAGG 253
Query: 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694
M DP + L C+ ++ +IFDE+ TGF R G AD G PDI C GK LTGG
Sbjct: 254 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 313
Query: 695 VIPLAATLATNAV 707
+ LAATL T V
Sbjct: 314 YLSLAATLCTADV 326
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 135/319 (42%), Gaps = 76/319 (23%)
Query: 400 QQFDACASWWTQ-------GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452
+ DA +SWWT D L +L R M HVMF +EPA A+LL
Sbjct: 76 EVLDAMSSWWTAIHGHGHPALDQALTTQL-RVMN-------HVMFGGLTHEPAARLAKLL 127
Query: 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512
+ G + +FSD+GS ++E+A KMA + + G+ K +++
Sbjct: 128 VDITPAGLDT-VFFSDSGSVSVEVAAKMALQYWR----------GRGLPGK---RRLMTW 173
Query: 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572
+G YHGDT AM P+ G +S W L +++
Sbjct: 174 RGGYHGDTFLAMSIC--DPHGGM---------------------HSLWTDVLAAQVFAPQ 210
Query: 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632
V D YS+ L Q+ +G + A+++EPVV A
Sbjct: 211 VPR-------------------DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGA 246
Query: 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692
GGM DP + L C+ ++ +IFDE+ TGF R G AD G PDI C GK LT
Sbjct: 247 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 306
Query: 693 GGVIPLAATLATNAVFDSF 711
GG + LAATL T V +
Sbjct: 307 GGYLSLAATLCTADVAHTI 325
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 134/315 (42%), Gaps = 76/315 (24%)
Query: 400 QQFDACASWWTQ-------GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452
+ DA +SWWT D L +L R M HVMF +EPA A+LL
Sbjct: 56 EVLDAMSSWWTAIHGHGHPALDQALTTQL-RVMN-------HVMFGGLTHEPAARLAKLL 107
Query: 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512
+ G + +FSD+GS ++E+A KMA + + G+ K +++
Sbjct: 108 VDITPAGLDT-VFFSDSGSVSVEVAAKMALQYWR----------GRGLPGK---RRLMTW 153
Query: 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572
+G YHGDT AM P+ G +S W L +++
Sbjct: 154 RGGYHGDTFLAMSIC--DPHGGM---------------------HSLWTDVLAAQVFAPQ 190
Query: 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632
V D YS+ L Q+ +G + A+++EPVV A
Sbjct: 191 VPR-------------------DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGA 226
Query: 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692
GGM DP + L C+ ++ +IFDE+ TGF R G AD G PDI C GK LT
Sbjct: 227 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 286
Query: 693 GGVIPLAATLATNAV 707
GG + LAATL T V
Sbjct: 287 GGYLSLAATLCTADV 301
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 130/309 (42%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF E + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E +D + L + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWDAKGE------ARD--------RFLTFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C GK LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 127/309 (41%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C GK LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 127/309 (41%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C GK LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 126/309 (40%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C G LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 126/309 (40%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF G + PDI C GK LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGATGKLFACEHAEIAPDILCLGKALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 126/309 (40%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF + G + PDI C G LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGKTGKLFACEHAEIAPDILCLGXALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 126/309 (40%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + +HGDT G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGFHGDTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C G LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 126/309 (40%), Gaps = 59/309 (19%)
Query: 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462
D +SWW +L M HVMF + PA+E L+ +
Sbjct: 47 DGMSSWWA-AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLEC 105
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
+ +D+GS A+E+A+KMA + + E FL + YHG+T G
Sbjct: 106 -VFLADSGSVAVEVAMKMALQYWQAKGEARQRFL--------------TFRNGYHGNTFG 150
Query: 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCS 582
AM DP +S W LPE L++ + S
Sbjct: 151 AMSV---------------------CDPDNSM--HSLWKGYLPENLFAPAPQ-------S 180
Query: 583 RDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLF 642
R + ++ERD A + +++ + I A+IIEP+V AGGM M P +
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEW 227
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
+ + K C I +I DE+ TGF R G + PDI C G LTGG + L+ATL
Sbjct: 228 LKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATL 287
Query: 703 ATNAVFDSF 711
T V ++
Sbjct: 288 TTREVAETI 296
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 150/363 (41%), Gaps = 61/363 (16%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ +++ + W PFTQ K E + +I+S G +D K + +D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMKDYDENPL-IIESGTGIKV---KDINGK---EYYDGFSSVWLN 56
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471
+ EL + + H PA + AE L+ + +R ++SD+G+
Sbjct: 57 -VHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLID-ISPKKLTRVFYSDSGA 114
Query: 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531
A+EIALKMAF+ + +GK +K I A+K YHGDT+GA+ +
Sbjct: 115 EAMEIALKMAFQYWKN--------IGKPEKQKFI-----AMKNGYHGDTIGAVSVGSIEL 161
Query: 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591
+ + P ++Y S E D C RD+ E
Sbjct: 162 FHHVYGPLMFES----YKAPIPYVYRS---------------ESGDPDEC-RDQXLRE-- 199
Query: 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651
LA + + + I AL IE +V A GM ++ + + + C
Sbjct: 200 ----LAQLLEEHHEE-------------IAALSIESMVQGASGMIVMPEGYLAGVRELCT 242
Query: 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
+ +I DEV TGF R G + PD+ GK +TGG +P+A T AT ++ +F
Sbjct: 243 TYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF 302
Query: 712 VGD 714
D
Sbjct: 303 YDD 305
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 150/363 (41%), Gaps = 61/363 (16%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ +++ + W PFTQ K E + +I+S G +D K + +D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMKDYDENPL-IIESGTGIKV---KDINGK---EYYDGFSSVWLN 56
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471
+ EL + + H PA + AE L+ + +R ++SD+G+
Sbjct: 57 -VHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLID-ISPKKLTRVFYSDSGA 114
Query: 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531
A+EIALKMAF+ + +GK +K I A+K YHGDT+GA+ +
Sbjct: 115 EAMEIALKMAFQYWKN--------IGKPEKQKFI-----AMKNGYHGDTIGAVSVGSIEL 161
Query: 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591
+ + P ++Y S E D C RD+ E
Sbjct: 162 FHHVYGPLMFES----YKAPIPYVYRS---------------ESGDPDEC-RDQCLRE-- 199
Query: 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651
LA + + + I AL IE +V A GM ++ + + + C
Sbjct: 200 ----LAQLLEEHHEE-------------IAALSIESMVQGASGMIVMPEGYLAGVRELCT 242
Query: 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
+ +I DEV TGF R G + PD+ GK +TGG +P+A T AT ++ +F
Sbjct: 243 TYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF 302
Query: 712 VGD 714
D
Sbjct: 303 YDD 305
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 107/280 (38%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ +A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GTIAFSGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ + + P S+ D S IF + D+A+I
Sbjct: 164 GHVY----RALYPCPLHGISE-----DDAIASIHRIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+IEPV +GG + P F + L C I +I DEV +G R G
Sbjct: 204 -------------VIEPV-QGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ +G PD+ + K + GG PLA V D+
Sbjct: 250 TLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDA 288
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663
++ LL+ L + I A+ +EP+ +AG + + +R + C I ++FDEV
Sbjct: 204 LADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNR-EICNQHNILLVFDEVI 262
Query: 664 TGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
TGF R G AD G PD+ C K +T G IP+ A +A+ ++ +F+
Sbjct: 263 TGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFM 311
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 106/280 (37%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ +A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GTIAFSGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ + + P S+ D S IF + D+A+I
Sbjct: 164 GHVY----RALYPCPLHGISE-----DDAIASIHRIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+IEPV GG + P F + L C I +I DEV +G R G
Sbjct: 204 -------------VIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ +G PD+ + K + GG PLA V D+
Sbjct: 250 TLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDA 288
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 106/280 (37%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ +A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GTIAFSGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ + + P S+ D S IF + D+A+I
Sbjct: 164 GHVY----RALYPCPLHGISE-----DDAIASIHRIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+IEPV GG + P F + L C I +I DEV +G R G
Sbjct: 204 -------------VIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ +G PD+ + K + GG PLA V D+
Sbjct: 250 TLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDA 288
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 105/280 (37%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ +A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GTIAFSGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ + + P S+ D S IF + D+A+I
Sbjct: 164 GHVY----RALYPCPLHGISE-----DDAIASIHRIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+IEPV GG + P F + L C I +I DE +G R G
Sbjct: 204 -------------VIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ +G PD+ + K + GG PLA V D+
Sbjct: 250 TLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDA 288
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 132/338 (39%), Gaps = 71/338 (21%)
Query: 372 PEEAVTVIDSRCGENFSVYQDQKNKFIG--QQFDACASWWTQGPDAT-LQIELARDMGYT 428
PE VID GE +Y NK++ W P+ + IE + + +
Sbjct: 21 PELFPLVIDH--GEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA 78
Query: 429 AARFGHVMFPENVYE-PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
AA + Y P LE A+ L+ + + +FS++G+ AIE ++K+
Sbjct: 79 AAN--------DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV------ 124
Query: 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547
K+T K I +A G +HG T G++ A + P+ G
Sbjct: 125 ----------KNTGRKYI----IAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPG---V 167
Query: 548 LDPPTVFMYNSKWILS---LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
+ P Y + W ++ P L ++++E F E+ YI
Sbjct: 168 IHVPYPNPYRNPWHINGYENPSELVNRVIE------------FIED------------YI 203
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
NL+ P +V+G + EP+ GG + F L K + I ++ DEV
Sbjct: 204 FVNLV--PPEEVAG----IFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM 256
Query: 665 GFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
G R G + VPD+ K L GG++P+ AT+
Sbjct: 257 GLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATI 294
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL 677
+ A + EPVV A+ P + + C I I DEV +G R G +
Sbjct: 190 TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRW 249
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
G PDIA GK L G PLA LA V+++ +G S
Sbjct: 250 SGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS 287
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD-LL 678
I A + EP++ A+GG+ + + C+ I I DEV TGF R G ++ +
Sbjct: 222 IAAFLAEPIL-ASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVF 280
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G VPDI + K +T G +PL + AV G++ K
Sbjct: 281 GVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAK 319
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
++S I A I EP++ GG+ + + + + CQ +I DEV GF R G
Sbjct: 211 ELSETIAAFIXEPII-TGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFG 269
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
PDI K +T +PL+AT ++++F G +
Sbjct: 270 FXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGE 311
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 76/251 (30%)
Query: 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521
+ +F+++G+ ++E A+K+A RK+ D GK+ + K ++ + S+HG T
Sbjct: 87 GKVFFANSGTESVEAAIKLA-RKYWRDK-------GKN------KWKFISFENSFHGRTY 132
Query: 522 GAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
G++ A P + GF P V P + Y+K+
Sbjct: 133 GSLSATGQPKFHKGF--------------EPLV-----------PGFSYAKL-------- 159
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
+D+ S+Y + A II V+ GG++
Sbjct: 160 -------------NDIDSVYKLLDEET--------------AGIIIEVIQGEGGVNEASE 192
Query: 641 LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAA 700
F L + C+ + + +I DEV TG R G PD+ K L GGV P+ A
Sbjct: 193 DFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGA 251
Query: 701 TLATNAVFDSF 711
LA V SF
Sbjct: 252 ILAREEVAQSF 262
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 111/287 (38%), Gaps = 81/287 (28%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
EL + A++F H N Y EP L A+ L+ +A R +F ++G+ A E A
Sbjct: 59 ELREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537
LK+A RKF+ D + + K ++A K ++HG TL + A
Sbjct: 113 LKLA-RKFAHD---------RYGSHKS---GIVAFKNAFHGRTLFTVSAGG--------- 150
Query: 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597
QP YS + LP DI + ++I +S L
Sbjct: 151 QPAYS----------------QDFAPLP----------ADIRHAAYNDI----NSASAL- 179
Query: 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657
+ S C A+I+EP+ GG+ F + L + C +
Sbjct: 180 ----------------IDDSTC--AVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALL 220
Query: 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
IFDEV TG R G G PD+ K L GG P+ A LAT
Sbjct: 221 IFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLAT 266
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
SG + A I EP++ + G + + D + L ++C+ R + +I DE TG R G
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 259
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K L G +PLAA + + A+
Sbjct: 260 RDGVTPDILTLSKTLGAG-LPLAAIVTSAAI 289
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
SG + A I EP++ + G + + D + L ++C+ R + +I DE TG R G
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 259
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K L G +PLAA + + A+
Sbjct: 260 RDGVTPDILTLSKTLGAG-LPLAAIVTSAAI 289
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
SG + A I EP++ + G + + D + L ++C+ R + +I DE TG R G
Sbjct: 200 SGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 258
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K L G +PLAA + + A+
Sbjct: 259 RDGVTPDILTLSKTLGAG-LPLAAIVTSAAI 288
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/365 (19%), Positives = 129/365 (35%), Gaps = 90/365 (24%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELAR 423
PFT + + V+ GE ++ + NK I D A W + + R
Sbjct: 21 PFTDTASLNQAGARVMTR--GEGVYLWDSEGNKII----DGMAGLWC------VNVGYGR 68
Query: 424 DMGYTAARFGHVMFP------ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
AAR P + + +E + LL + G+ R +++++GS +++
Sbjct: 69 KDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF-DRVFYTNSGSESVDTM 127
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--------MEAQA- 528
++M R + D K + ++ YHG T+G M Q
Sbjct: 128 IRMVRRYW-------------DVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGD 174
Query: 529 -PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
P P ++QPW+ G KD+T
Sbjct: 175 LPIPGMAHIEQPWWYKHG------------------------------KDMT-------- 196
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
+ + + ++ + +L+ KV+ +G EP+ AGG+ + + +
Sbjct: 197 -----PDEFGVVAARWLEEKILEIGADKVAAFVG----EPI-QGAGGVIVPPATYWPEIE 246
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C+ + ++ DEV GF R G G PD+ K L+ G +P+ A V
Sbjct: 247 RICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRV 306
Query: 708 FDSFV 712
+ +
Sbjct: 307 AEGLI 311
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
SG + A I EP++ + G + + D + L ++C+ R + +I DE TG R G
Sbjct: 199 SGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQ 257
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K L G +PLAA + + A+
Sbjct: 258 RDGVTPDILTLSKTLGAG-LPLAAIVTSAAI 287
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
+ LQ+P + A ++EP+ G+ + DP + + + C ++ I DE+ TG
Sbjct: 179 ERALQDPN------VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 231
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVF 708
R G D PDI GK L+GG+ P++A L + +
Sbjct: 232 LARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIM 274
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
+ LQ+P + A ++EP+ G+ + DP + + + C ++ I DE+ TG
Sbjct: 216 ERALQDPN------VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 268
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVF 708
R G D PDI GK L+GG+ P++A L + +
Sbjct: 269 LARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIM 311
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
+ LQ+P + A ++EP+ G+ + DP + + + C ++ I DE+ TG
Sbjct: 216 ERALQDPN------VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 268
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVF 708
R G D PDI GK L+GG+ P++A L + +
Sbjct: 269 LARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIM 311
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
+ LQ+P + A ++EP+ G+ + DP + + + C ++ I DE+ TG
Sbjct: 216 ERALQDPN------VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 268
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVF 708
R G D PDI GK L+GG+ P++A L + +
Sbjct: 269 LARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIM 311
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I EPVV AG + + + + E + + +I DEV TGF RL +LLG
Sbjct: 200 IAAIIFEPVVGNAGVLVPTEDFLKAL--HEAKAYGVLLIADEVMTGF-RLAFGGATELLG 256
Query: 680 CVPDIACYGKLLTGGVIPLAA 700
PD+ GK+L GG +P AA
Sbjct: 257 LKPDLVTLGKILGGG-LPAAA 276
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
LQ+P + A I+EPV AG + D F + C+ + + DEV TG R
Sbjct: 189 LQDPN------VCAFIVEPVQGEAGVIVPSDSYFPGV-ASLCKKYNVLFVADEVQTGLGR 241
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVF 708
G G PD+ GK L+GG P++A LA + V
Sbjct: 242 TGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVM 281
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EPV GG+ P F R + Q + +I DE+ TG R G + G V
Sbjct: 188 AVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIV 246
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI K L GGV PL + V S
Sbjct: 247 PDILTLAKALGGGV-PLGVAVMREEVARSM 275
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A++IEPV H GG + P F L K C + + DEV TGF R G +
Sbjct: 229 VAAVVIEPV-HGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHEN 287
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
VPD+ K + GG +PL+A + D
Sbjct: 288 VVPDLIVTAKGIAGG-LPLSAVTGRAEIMDG 317
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 103/282 (36%), Gaps = 64/282 (22%)
Query: 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491
F H F YE ++ AELL R ++G+ A+E A+K+A + +
Sbjct: 96 FTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA--RLATGRPA 153
Query: 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551
+V F +YHG T M A S P+ S G F P
Sbjct: 154 VVAF-----------------DNAYHGRTNLTMALTAKS-------MPYKSQFGPFA--P 187
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE--IFYEERDSSDLASIYSSYISQNLL 609
V+ + + L RDE + EE ++ I + +Q+L
Sbjct: 188 EVYRMPASYPL--------------------RDEPGLTGEEAARRAISRIETQIGAQSL- 226
Query: 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669
A+IIEP+ GG + P F L + I DEV TGF R
Sbjct: 227 -----------AAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFART 274
Query: 670 GVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G ++ G VPDI + GG +PL+A + D+
Sbjct: 275 GAWFASEHEGIVPDIVTMAXGIAGG-MPLSAVTGRAELMDAV 315
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP+ GG+ P F + L C + ++FDEV G R G G
Sbjct: 204 AVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVT 262
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI K L GG P++A L T + +F
Sbjct: 263 PDILTSAKALGGG-FPVSAMLTTQEIASAF 291
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F + L + +IFDEV TGF R+
Sbjct: 209 IAGVIVEPV---AGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGY 264
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 265 FGVTPDLTCLGKVIGGG-LPVGA 286
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A I+EP+ AG + D Q + C+ + + DEV TG R G
Sbjct: 213 VCAFIVEPIQGEAGVIVPSDNYLQGVY-DICKKYNVLFVADEVQTGLGRTGKLLCVHHYN 271
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVF 708
PD+ GK L+GG P++A LA + +
Sbjct: 272 VKPDVILLGKALSGGHYPISAVLANDDIM 300
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 23/152 (15%)
Query: 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615
YNS + L LP +++ C + EE ++ + + + +++ L + +
Sbjct: 179 YNSVFGLPLPGFVHLT---------CPHYWRYGEEGETEEQ---FVARLARELEETIQRE 226
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+ I EPV+ A G + FQ IL + IPVI DEV GF R T
Sbjct: 227 GADTIAGFFAEPVMGAGGVIPPAKGYFQAIL-PILRKYDIPVISDEVICGFGR-----TG 280
Query: 676 DLLGCV-----PDIACYGKLLTGGVIPLAATL 702
+ GCV PD K LT G P+ A +
Sbjct: 281 NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVI 312
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 23/156 (14%)
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
T F YNS + L LP +++ C + EE ++ + + + +++ L +
Sbjct: 181 TGFPYNSVFGLPLPGFVHLT---------CPHYWRYGEEGETEEQ---FVARLARELEET 228
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671
+ + I EPV+ A G + FQ IL + IPVI DEV GF R
Sbjct: 229 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAIL-PILRKYDIPVISDEVVCGFGR--- 284
Query: 672 ETTADLLGCV-----PDIACYGKLLTGGVIPLAATL 702
T + GCV PD LT G P+ A +
Sbjct: 285 --TGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVI 318
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMV--DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG +V P F L + + +IFDEV TGF R+
Sbjct: 201 IACVIVEPV---AGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQGY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 257 YGVTPDLTCLGKVIGGG-LPVGA 278
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A I+EP+ G+++ F + ++ C+ + + DE+ TG R G D
Sbjct: 184 AAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNV 242
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ G L GGV P++ A + F
Sbjct: 243 TPDMYILGXALGGGVFPISCAAANRDILGVF 273
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ +I+EPV AG + + PL F L C +I DEV TGF R+ + D
Sbjct: 201 VACIIVEPV---AGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDY 256
Query: 678 LGCVPDIACYGKLLTGG 694
+PD+ C GK++ GG
Sbjct: 257 YHVIPDLTCLGKIIGGG 273
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 129/362 (35%), Gaps = 95/362 (26%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELAR 423
PF+ + + EE VI G + D + + I DA A W + I R
Sbjct: 26 PFSANNALGEEGTRVITRARGVWLN---DSEGEEI---LDAMAGLWC------VNIGYGR 73
Query: 424 D-MGYTAARFGHVM-----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
D + AAR + F + + PA+ A+ L + + G + +F+ GS A +
Sbjct: 74 DELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAE-LAPGDLNHVFFAGGGSEANDTN 132
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--------LGAMEAQAP 529
++M V + K EK + +++ K +YHG T + M AQ+
Sbjct: 133 IRM----------VRTYWQNKGQPEKTV---IISRKNAYHGSTVASSALGGMAGMHAQSG 179
Query: 530 -SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588
P + QP + G +DP ++ L+ L I+E
Sbjct: 180 LIPDVHHINQPNWWAEGGDMDP-------EEFGLARARELEEAILE------------LG 220
Query: 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD---PLFQRI 645
E R + A I EPV A G + D P QRI
Sbjct: 221 ENR----------------------------VAAFIAEPVQGAGGVIVAPDSYWPEIQRI 252
Query: 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATN 705
C I +I DEV GF R G +G P I K L+ G P+ ++ +
Sbjct: 253 ----CDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCD 308
Query: 706 AV 707
V
Sbjct: 309 EV 310
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+IIEP+ GG + F L + + + I I DEV +GF R G D G
Sbjct: 227 VAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPDI K + GG +PL+A + D+
Sbjct: 286 VVPDIITMAKGIAGG-LPLSAITGRADLLDAV 316
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615
YNS + L LP +++ C + EE ++ + + + +++ L + +
Sbjct: 185 YNSVFGLPLPGFVHLT---------CPHYWRYGEEGETEEQ---FVARLARELEETIQRE 232
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+ I EPV A G + FQ IL + IPVI DEV GF R T
Sbjct: 233 GADTIAGFFAEPVXGAGGVIPPAKGYFQAIL-PILRKYDIPVISDEVICGFGR-----TG 286
Query: 676 DLLGCV-----PDIACYGKLLTGGVIPLAATL 702
+ GCV PD K LT G P A +
Sbjct: 287 NTWGCVTYDFTPDAIISSKNLTAGFFPXGAVI 318
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 620 IGALIIEPVVHAAGGMHMVDP---LFQRI--LVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+++EP+V G +V+P +++ LV E VI+DEV T F R
Sbjct: 203 VAAILVEPIV---GNFGIVEPKPGFLEKVNELVHEAGAL---VIYDEVITAF-RFXYGGA 255
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAA 700
DLLG PD+ G ++ GG +P+ A
Sbjct: 256 QDLLGVTPDLTALGXVIGGG-LPIGA 280
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A++IEP+ GG + F L+ C+ + I DEV TGF R G + G
Sbjct: 228 LAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEG 286
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ + GG +PL+A + DS
Sbjct: 287 IDPDLIVTAXGIAGG-LPLSAVTGRAEIMDS 316
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 619 CIGALIIEPVVHAAGGMHMVDP------LFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672
I A I EP++ G +V P Q +L K I ++ DEV TGF RLG
Sbjct: 220 TIAAFIGEPILGTGG---IVPPPAGYWEAIQTVLNK----HDILLVADEVVTGFGRLGTX 272
Query: 673 TTADLLGCVPDIACYG-KLLTGGVIPLAATLATNAVF 708
+D G PDI K LT PL+ ++ ++ V+
Sbjct: 273 FGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVW 309
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I +I+EP+V +G + + D F L + ++FDEV TGF R+ +
Sbjct: 198 GEIAGVILEPIVGNSGFI-VPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I +I+EP+V +G + + D F L + ++FDEV TGF R+ +
Sbjct: 198 GEIAGVILEPIVGNSGFI-VPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I +I+EP+V +G + + D F L + ++FDEV TGF R+ +
Sbjct: 198 GEIAGVILEPIVGNSGFI-VPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I +I+EP+V +G + + D F L + ++FDEV TGF R+ +
Sbjct: 203 GEIAGVILEPIVGNSGFI-VPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK 260
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 261 FGVTPDLTTLGKIIGGG-LPVGA 282
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I +I+EP+V +G + + D F L + ++FDEV TGF R+ +
Sbjct: 203 GEIAGVILEPIVGNSGFI-VPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK 260
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 261 FGVTPDLTTLGKIIGGG-LPVGA 282
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I +I+EPVV AG + D F L + + ++FDEV TGF R+ + G
Sbjct: 184 IAGVILEPVVGNAGFIP-PDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFG 241
Query: 680 CVPDIACYGKLLTGGVIPLAA 700
PD+ GK++ GG +P+ A
Sbjct: 242 VTPDLTTLGKVIGGG-LPVGA 261
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
++ D S +S + + L + + I A I EP++ GG+ + +
Sbjct: 189 YFRRTDRSXSEEQFSQHCADKLEEXILAEGPETIAAFIGEPIL-GTGGIVPPPAGYWEKI 247
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IACYGKLLTGGVIPLAATLATN 705
+ + ++ DEV TGF RLG +D G PD I K LT PL+ + +
Sbjct: 248 QAVLKKYDVLLVADEVVTGFGRLGTXFGSDHYGIKPDLITIAXKGLTSAYAPLSGVIVAD 307
Query: 706 AVFDSFVGDSKK 717
V+ V S K
Sbjct: 308 RVWQVLVQGSDK 319
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV+ AG ++ P F L + + +I DEV TGF RLG+E
Sbjct: 204 IAGVIVEPVIANAG---VIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
DI GK++ GG P+ A + V
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGAVAGSREVMS 290
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I EPV+ A G + FQ IL + IP+I DEV GF R T + G
Sbjct: 229 IAGFFAEPVMGAGGVIPPAKGYFQAIL-PILRKYDIPMISDEVICGFGR-----TGNTWG 282
Query: 680 C-----VPDIACYGKLLTGGVIPLAATL 702
C +PD LT G P+ A +
Sbjct: 283 CLTYDFMPDAIISSXNLTAGFFPMGAVI 310
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 113/304 (37%), Gaps = 58/304 (19%)
Query: 407 SWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
+ T G A ++ RD +F H F YE + AE L + R
Sbjct: 88 AVTTIGNSAPRVVDAVRDQ---VEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVL 144
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
++G+ A+E ++K+A + T K V+A +YHG T M
Sbjct: 145 FNSGAEAVENSIKVA----------------RAHTRK---QAVVAFDYAYHGRTNLTMAL 185
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
A S P+ SG G F P ++ + +S P Y + KDI + D
Sbjct: 186 TAKS-------MPYKSGFGPF--APEIY----RAPVSYP---YRDNLLDKDI---ATDGE 226
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
ER + NL+ + + A+IIEP+ G + D F L
Sbjct: 227 LAAER-------------AINLIDKQ--IGAANLAAVIIEPIAGEGGFIVPADG-FLPAL 270
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C++ + I DEV TGF R G D PD+ + G PL+A
Sbjct: 271 QRWCRDNDVVFIADEVQTGFARTGAMFACDHENVEPDLIVTAXGIADG-FPLSAVTGRAE 329
Query: 707 VFDS 710
+ D+
Sbjct: 330 IMDA 333
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 18/78 (23%)
Query: 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522
R +F+++G+ +IE A K A RK++F+ V + +A K S+HG TLG
Sbjct: 95 RVFFTNSGTESIEGAXKTA-RKYAFNKGVKGG-------------QFIAFKHSFHGRTLG 140
Query: 523 AMEAQAPSPYTGFLQQPW 540
A+ A Y Q+P+
Sbjct: 141 ALSLTANEKY----QKPF 154
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+E V GG++ + F + L K C + I +I DE+ G R G + +
Sbjct: 182 AIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQIL 240
Query: 682 PDIACYGKLLTGGV 695
PDI K L G+
Sbjct: 241 PDIXTSAKALGCGL 254
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 94/261 (36%), Gaps = 77/261 (29%)
Query: 444 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEK 503
P +E AELL + + + +F++ G+ A E A+K+A + +
Sbjct: 71 PQMELAELLSKNT---FGGKVFFANTGTEANEAAIKIARKY--------------GKKKS 113
Query: 504 CIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563
+ ++L+ S+HG TLG++ A Y Q+P+ P V
Sbjct: 114 EKKYRILSAHNSFHGRTLGSLTATGQPKY----QKPF---------EPLV---------- 150
Query: 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623
P + Y + +D+ + S D+ +++
Sbjct: 151 -PGFEYFEFNNVEDL----------RRKMSEDVCAVF----------------------- 176
Query: 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD 683
+EP+ +G + + K C ++FDEV G R G G VPD
Sbjct: 177 -LEPIQGESGIVPATKEFLEEAR-KLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD 234
Query: 684 IACYGKLLTGGVIPLAATLAT 704
+ K L GGV P+ A +
Sbjct: 235 VLTTAKGLGGGV-PIGAVIVN 254
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G IGA IEP+ + GG+ + F R C+ I V+ DEV G R G +
Sbjct: 199 AGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFE 257
Query: 677 LLGCVPDI 684
G VPDI
Sbjct: 258 HEGFVPDI 265
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G IGA IEP+ + GG+ + F R C+ I V+ DEV G R G +
Sbjct: 212 AGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFE 270
Query: 677 LLGCVPDI 684
G VPDI
Sbjct: 271 HEGFVPDI 278
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP++ AGG + F +L E +IFDEV T RL ++LG
Sbjct: 236 AILVEPML-GAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT--SRLSGGGAQEMLGIS 292
Query: 682 PDIACYGKLLTGGV 695
D+ GK + GG+
Sbjct: 293 ADLTTLGKYIGGGM 306
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 77/261 (29%)
Query: 444 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEK 503
P E AELL + + + +F++ G+ A E A+K+A + +
Sbjct: 83 PQXELAELLSKNT---FGGKVFFANTGTEANEAAIKIARKY--------------GKKKS 125
Query: 504 CIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563
+ ++L+ S+HG TLG++ A Y Q+P+ P V
Sbjct: 126 EKKYRILSAHNSFHGRTLGSLTATGQPKY----QKPF---------EPLV---------- 162
Query: 564 LPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623
P + Y + +D+ + S D+ +++
Sbjct: 163 -PGFEYFEFNNVEDL----------RRKXSEDVCAVF----------------------- 188
Query: 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD 683
+EP+ +G + + K C ++FDEV G R G G VPD
Sbjct: 189 -LEPIQGESGIVPATKEFLEEAR-KLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPD 246
Query: 684 IACYGKLLTGGVIPLAATLAT 704
+ K L GGV P+ A +
Sbjct: 247 VLTTAKGLGGGV-PIGAVIVN 266
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I + EP+ A G H P F + + C +IFDEV TG G L
Sbjct: 232 IACFVAEPIQGAGGDRHF-RPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 291 VAPDIVAFGK 300
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I + EP+ G H P F + + C +IFDEV TG G L
Sbjct: 232 IACFVAEPIQGEGGDRHF-RPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 291 VAPDIVAFGK 300
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I + EP+ G H P F + + C +IFDEV TG G L
Sbjct: 232 IACFVAEPIQGEGGDRHF-RPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 291 VAPDIVAFGK 300
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I + EP+ G H P F + + C +IFDEV TG G L
Sbjct: 232 IACFVAEPIQGEGGDRHF-RPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 291 VAPDIVAFGK 300
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY-------SGRGL 546
D G+ +KC+ LK +A S+HG G + +AP WY SG
Sbjct: 122 DLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLE 181
Query: 547 FLDPPTVFMYNSKW 560
+ PP + + W
Sbjct: 182 LVGPPGKVVIKANW 195
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY-------SGRGL 546
D G+ +KC+ LK +A S+HG G + +AP WY SG
Sbjct: 122 DLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLE 181
Query: 547 FLDPPTVFMYNSKW 560
+ PP + + W
Sbjct: 182 LVGPPGKVVIKANW 195
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL---FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
I A I EPV G V P+ F R + + I DEV +GF R+G
Sbjct: 202 IAAFIAEPV----GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQA 256
Query: 677 LLGCVPDIACYGK 689
LL PD+ C K
Sbjct: 257 LLDVQPDLTCLAK 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,082,148
Number of Sequences: 62578
Number of extensions: 790392
Number of successful extensions: 1630
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 106
length of query: 719
length of database: 14,973,337
effective HSP length: 106
effective length of query: 613
effective length of database: 8,340,069
effective search space: 5112462297
effective search space used: 5112462297
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)