Query 005009
Match_columns 719
No_of_seqs 359 out of 3081
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 16:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02974 adenosylmethionine-8- 100.0 3E-112 6E-117 1000.9 59.0 662 24-713 14-678 (817)
2 COG0161 BioA Adenosylmethionin 100.0 8.6E-71 1.9E-75 602.8 24.7 302 356-714 8-309 (449)
3 COG4992 ArgD Ornithine/acetylo 100.0 3.1E-65 6.6E-70 548.1 23.7 253 375-713 24-276 (404)
4 COG0160 GabT 4-aminobutyrate a 100.0 6.1E-64 1.3E-68 551.9 26.7 277 375-713 38-314 (447)
5 PRK07482 hypothetical protein; 100.0 7.6E-62 1.6E-66 547.9 27.1 304 352-713 7-313 (461)
6 PRK07481 hypothetical protein; 100.0 1.1E-61 2.4E-66 545.0 28.3 302 355-713 4-306 (449)
7 PRK05965 hypothetical protein; 100.0 2E-61 4.3E-66 544.2 26.7 301 354-713 7-308 (459)
8 PRK06943 adenosylmethionine--8 100.0 6.6E-60 1.4E-64 530.8 27.5 302 353-713 14-315 (453)
9 PRK08742 adenosylmethionine--8 100.0 1.1E-59 2.3E-64 530.9 28.1 302 353-712 23-329 (472)
10 KOG1404 Alanine-glyoxylate ami 100.0 2.9E-60 6.3E-65 499.6 21.8 276 374-715 31-306 (442)
11 PRK07678 aminotransferase; Val 100.0 1.4E-59 3E-64 528.3 27.0 298 352-713 9-306 (451)
12 PRK07030 adenosylmethionine--8 100.0 2.4E-59 5.3E-64 527.7 27.5 300 354-712 8-307 (466)
13 PLN02760 4-aminobutyrate:pyruv 100.0 3E-59 6.6E-64 530.7 28.0 299 358-713 54-353 (504)
14 PRK07036 hypothetical protein; 100.0 3.1E-59 6.7E-64 527.1 27.7 301 353-712 11-313 (466)
15 PRK07480 putative aminotransfe 100.0 3.5E-59 7.6E-64 525.4 27.6 300 354-712 11-311 (456)
16 PRK06916 adenosylmethionine--8 100.0 3.7E-59 8.1E-64 525.9 26.9 301 353-712 16-316 (460)
17 PRK06105 aminotransferase; Pro 100.0 1.5E-58 3.3E-63 521.0 28.3 303 353-713 8-311 (460)
18 PRK12403 putative aminotransfe 100.0 2.4E-58 5.1E-63 519.4 28.0 299 355-713 16-315 (460)
19 PRK06541 hypothetical protein; 100.0 6.3E-58 1.4E-62 515.7 28.6 304 352-713 11-314 (460)
20 PRK06062 hypothetical protein; 100.0 4.5E-58 9.7E-63 515.9 27.1 292 353-713 16-307 (451)
21 PRK07483 hypothetical protein; 100.0 1.2E-57 2.6E-62 511.4 26.5 281 375-713 12-293 (443)
22 KOG1401 Acetylornithine aminot 100.0 1.4E-57 3.1E-62 482.7 23.2 265 374-716 37-301 (433)
23 PRK06173 adenosylmethionine--8 100.0 4.2E-57 9.2E-62 504.9 26.4 291 356-713 9-300 (429)
24 PRK09221 beta alanine--pyruvat 100.0 7.4E-57 1.6E-61 505.3 27.8 296 358-713 15-311 (445)
25 PRK13360 omega amino acid--pyr 100.0 1.1E-56 2.5E-61 503.4 27.9 295 359-713 13-308 (442)
26 PRK05630 adenosylmethionine--8 100.0 1.4E-56 3.1E-61 499.8 26.6 288 355-713 6-294 (422)
27 PRK07986 adenosylmethionine--8 100.0 4.4E-56 9.5E-61 496.4 27.2 289 357-713 9-298 (428)
28 PRK06917 hypothetical protein; 100.0 8.1E-56 1.8E-60 497.1 27.2 277 378-713 16-293 (447)
29 PF00202 Aminotran_3: Aminotra 100.0 3.7E-56 7.9E-61 483.6 19.7 269 378-713 1-269 (339)
30 TIGR03372 putres_am_tran putre 100.0 3.5E-55 7.7E-60 490.2 25.7 253 384-712 64-316 (442)
31 PRK06938 diaminobutyrate--2-ox 100.0 5.8E-55 1.3E-59 492.0 25.6 274 375-712 45-321 (464)
32 PRK11522 putrescine--2-oxoglut 100.0 5.4E-55 1.2E-59 491.3 25.1 261 374-712 62-323 (459)
33 PRK05639 4-aminobutyrate amino 100.0 1.6E-54 3.5E-59 487.4 26.3 277 375-711 35-312 (457)
34 PRK06931 diaminobutyrate--2-ox 100.0 3.1E-54 6.7E-59 485.6 25.8 274 375-712 40-315 (459)
35 PRK06082 4-aminobutyrate amino 100.0 6.2E-54 1.4E-58 483.2 25.6 276 360-711 44-319 (459)
36 PRK05964 adenosylmethionine--8 100.0 1.1E-53 2.4E-58 477.2 27.3 289 353-712 4-292 (423)
37 PRK08593 4-aminobutyrate amino 100.0 2E-53 4.4E-58 477.6 27.3 274 375-712 24-298 (445)
38 KOG1402 Ornithine aminotransfe 100.0 6.8E-54 1.5E-58 441.8 20.0 259 376-714 42-301 (427)
39 PRK06058 4-aminobutyrate amino 100.0 2.6E-53 5.7E-58 476.8 25.8 273 375-713 38-311 (443)
40 PRK05769 4-aminobutyrate amino 100.0 1.5E-52 3.3E-57 470.0 26.7 274 375-711 36-311 (441)
41 TIGR00709 dat 2,4-diaminobutyr 100.0 2.3E-52 5E-57 469.0 25.8 273 375-711 21-295 (442)
42 PRK07495 4-aminobutyrate amino 100.0 8.3E-52 1.8E-56 462.1 26.5 267 376-713 23-290 (425)
43 PRK12389 glutamate-1-semialdeh 100.0 1.2E-51 2.6E-56 461.4 26.7 256 375-712 35-290 (428)
44 TIGR00700 GABAtrnsam 4-aminobu 100.0 1.8E-51 3.9E-56 459.1 26.7 275 374-712 14-288 (420)
45 PRK06148 hypothetical protein; 100.0 2E-51 4.2E-56 499.7 27.2 271 375-713 606-877 (1013)
46 PRK08117 4-aminobutyrate amino 100.0 3.7E-51 7.9E-56 458.3 26.6 272 376-712 26-298 (433)
47 TIGR00508 bioA adenosylmethion 100.0 5E-51 1.1E-55 456.2 26.6 293 354-713 8-301 (427)
48 PRK06918 4-aminobutyrate amino 100.0 6.1E-51 1.3E-55 458.7 26.9 273 376-712 37-310 (451)
49 PRK06777 4-aminobutyrate amino 100.0 6.1E-51 1.3E-55 454.9 26.3 267 376-713 23-290 (421)
50 TIGR02407 ectoine_ectB diamino 100.0 4E-51 8.8E-56 455.1 24.8 265 375-712 17-285 (412)
51 PRK09264 diaminobutyrate--2-ox 100.0 6.5E-51 1.4E-55 455.2 25.2 264 375-711 21-288 (425)
52 PRK09792 4-aminobutyrate trans 100.0 1.1E-50 2.3E-55 452.9 26.6 269 375-713 22-290 (421)
53 COG0001 HemL Glutamate-1-semia 100.0 1.4E-50 2.9E-55 439.0 24.3 281 350-713 7-291 (432)
54 PLN02482 glutamate-1-semialdeh 100.0 2.6E-50 5.7E-55 454.3 27.0 254 375-712 81-336 (474)
55 PRK00615 glutamate-1-semialdeh 100.0 2.6E-50 5.6E-55 450.4 26.3 256 374-713 34-292 (433)
56 PRK08360 4-aminobutyrate amino 100.0 8.9E-50 1.9E-54 447.8 27.0 273 375-713 23-296 (443)
57 PRK08297 L-lysine aminotransfe 100.0 6.4E-50 1.4E-54 449.0 25.8 270 379-709 30-309 (443)
58 TIGR00699 GABAtrns_euk 4-amino 100.0 7.9E-50 1.7E-54 448.3 25.2 271 376-695 41-329 (464)
59 PRK04013 argD acetylornithine/ 100.0 7E-50 1.5E-54 437.7 23.9 244 374-708 5-248 (364)
60 PRK07046 aminotransferase; Val 100.0 1.7E-49 3.8E-54 446.3 27.7 292 332-712 12-307 (453)
61 PRK03715 argD acetylornithine 100.0 1.9E-49 4E-54 439.5 23.1 250 375-709 18-267 (395)
62 PRK04612 argD acetylornithine 100.0 3.6E-49 7.8E-54 438.7 25.4 258 375-713 22-279 (408)
63 TIGR03246 arg_catab_astC succi 100.0 7.9E-49 1.7E-53 434.7 25.7 255 375-713 17-271 (397)
64 PLN00144 acetylornithine trans 100.0 6.2E-49 1.3E-53 433.6 23.8 256 384-713 4-259 (382)
65 TIGR03251 LAT_fam L-lysine 6-t 100.0 1.1E-48 2.3E-53 438.0 26.1 277 375-709 17-302 (431)
66 PRK06149 hypothetical protein; 100.0 7.3E-49 1.6E-53 476.7 26.1 270 375-713 567-837 (972)
67 PRK12381 bifunctional succinyl 100.0 1.5E-47 3.2E-52 425.7 24.6 255 375-713 21-275 (406)
68 PLN02624 ornithine-delta-amino 100.0 1.4E-46 3E-51 425.5 26.1 258 376-712 58-316 (474)
69 PRK04073 rocD ornithine--oxo-a 100.0 3.2E-44 7E-49 397.5 24.6 257 375-713 22-279 (396)
70 KOG1403 Predicted alanine-glyo 100.0 2.3E-45 4.9E-50 374.3 11.7 280 374-719 28-309 (452)
71 TIGR00713 hemL glutamate-1-sem 100.0 7.5E-44 1.6E-48 397.7 23.8 257 375-713 30-286 (423)
72 PRK08088 4-aminobutyrate amino 100.0 1.9E-43 4E-48 395.2 26.9 268 376-713 24-291 (425)
73 PRK00062 glutamate-1-semialdeh 100.0 2.5E-43 5.4E-48 394.3 24.8 256 375-712 32-287 (426)
74 PRK01278 argD acetylornithine 100.0 3.6E-43 7.9E-48 387.8 25.7 255 375-713 13-267 (389)
75 PRK05093 argD bifunctional N-s 100.0 8.4E-43 1.8E-47 387.0 25.0 254 376-713 23-276 (403)
76 PRK06209 glutamate-1-semialdeh 100.0 7.6E-43 1.6E-47 390.8 24.8 242 374-710 29-271 (431)
77 TIGR01885 Orn_aminotrans ornit 100.0 2.2E-42 4.7E-47 383.4 24.8 259 376-713 20-279 (401)
78 KOG1405 4-aminobutyrate aminot 100.0 4.4E-43 9.4E-48 364.3 15.3 291 382-714 63-370 (484)
79 PRK02936 argD acetylornithine 100.0 8.9E-41 1.9E-45 366.9 25.1 249 375-713 11-259 (377)
80 PRK00854 rocD ornithine--oxo-a 100.0 8.9E-41 1.9E-45 370.0 24.7 255 376-712 24-279 (401)
81 PTZ00125 ornithine aminotransf 100.0 5.8E-40 1.3E-44 363.0 24.8 258 375-713 13-271 (400)
82 PRK03244 argD acetylornithine 100.0 6.1E-40 1.3E-44 363.0 24.8 251 375-713 25-275 (398)
83 COG0132 BioD Dethiobiotin synt 100.0 7.6E-40 1.6E-44 332.0 21.2 198 36-317 1-208 (223)
84 cd00610 OAT_like Acetyl ornith 100.0 6E-38 1.3E-42 347.4 25.7 279 355-711 3-281 (413)
85 PRK04260 acetylornithine amino 100.0 7.2E-38 1.6E-42 344.2 23.4 247 375-713 11-257 (375)
86 PRK02627 acetylornithine amino 100.0 8.5E-38 1.8E-42 344.8 23.9 253 376-713 22-274 (396)
87 PF13500 AAA_26: AAA domain; P 100.0 1.3E-35 2.9E-40 298.6 17.6 196 38-319 1-198 (199)
88 PRK12374 putative dithiobiotin 100.0 1.2E-31 2.6E-36 276.6 21.6 202 36-325 1-215 (231)
89 TIGR00707 argD acetylornithine 100.0 6.5E-31 1.4E-35 288.2 24.0 254 375-713 9-262 (379)
90 PRK00090 bioD dithiobiotin syn 100.0 3.3E-30 7.1E-35 263.7 23.2 203 39-325 1-214 (222)
91 PRK00784 cobyric acid synthase 99.9 7.3E-27 1.6E-31 265.5 18.7 200 36-320 1-234 (488)
92 PRK07505 hypothetical protein; 99.9 6.3E-26 1.4E-30 251.9 20.7 231 377-713 30-273 (402)
93 TIGR00347 bioD dethiobiotin sy 99.9 4.5E-24 9.8E-29 208.6 19.6 165 41-287 1-166 (166)
94 PRK06278 cobyrinic acid a,c-di 99.9 5.7E-24 1.2E-28 238.7 21.2 190 18-312 218-418 (476)
95 COG1797 CobB Cobyrinic acid a, 99.9 4.2E-24 9.2E-29 231.4 17.9 176 38-319 1-185 (451)
96 PRK13896 cobyrinic acid a,c-di 99.9 9.9E-24 2.2E-28 234.5 19.4 174 37-319 1-181 (433)
97 TIGR00313 cobQ cobyric acid sy 99.9 5.1E-24 1.1E-28 241.0 17.3 194 40-316 1-227 (475)
98 PRK01077 cobyrinic acid a,c-di 99.9 5.1E-23 1.1E-27 232.0 19.4 177 36-318 2-186 (451)
99 TIGR00379 cobB cobyrinic acid 99.9 6.9E-23 1.5E-27 230.7 18.9 174 39-319 1-184 (449)
100 PRK13393 5-aminolevulinate syn 99.9 1.1E-22 2.3E-27 226.3 17.5 211 400-713 46-268 (406)
101 PLN02822 serine palmitoyltrans 99.9 1.5E-22 3.3E-27 230.0 18.1 230 376-713 93-337 (481)
102 PRK09064 5-aminolevulinate syn 99.9 2E-21 4.3E-26 215.9 17.8 210 400-712 47-268 (407)
103 TIGR01821 5aminolev_synth 5-am 99.9 5.1E-21 1.1E-25 212.4 18.8 211 400-713 46-268 (402)
104 PRK05632 phosphate acetyltrans 99.9 8.2E-21 1.8E-25 223.9 18.7 185 36-329 1-212 (684)
105 cd03109 DTBS Dethiobiotin synt 99.8 1.6E-20 3.4E-25 178.1 15.9 88 222-311 40-134 (134)
106 PLN02955 8-amino-7-oxononanoat 99.8 1.6E-20 3.5E-25 210.3 16.9 227 400-717 103-344 (476)
107 COG0156 BioF 7-keto-8-aminopel 99.8 3.2E-20 6.9E-25 203.6 17.5 220 392-718 36-268 (388)
108 COG1492 CobQ Cobyric acid synt 99.8 1.3E-21 2.9E-26 215.7 5.8 211 37-317 1-231 (486)
109 PRK07179 hypothetical protein; 99.8 3.6E-18 7.8E-23 190.1 18.7 218 375-712 44-271 (407)
110 PLN03227 serine palmitoyltrans 99.8 1.1E-17 2.4E-22 185.7 16.3 216 402-712 1-230 (392)
111 TIGR01825 gly_Cac_T_rel pyrido 99.7 6.1E-17 1.3E-21 178.1 18.8 227 376-712 17-253 (385)
112 PRK05958 8-amino-7-oxononanoat 99.7 1E-16 2.2E-21 175.7 20.0 224 377-712 24-259 (385)
113 PRK13392 5-aminolevulinate syn 99.7 8.7E-17 1.9E-21 179.2 16.4 212 400-712 47-268 (410)
114 PRK05937 8-amino-7-oxononanoat 99.7 2E-16 4.2E-21 174.2 17.9 211 400-712 5-232 (370)
115 KOG1359 Glycine C-acetyltransf 99.7 4.6E-16 1E-20 160.0 14.4 228 377-718 50-290 (417)
116 PRK06939 2-amino-3-ketobutyrat 99.6 5.6E-15 1.2E-19 162.8 19.1 229 378-712 27-265 (397)
117 TIGR01822 2am3keto_CoA 2-amino 99.6 9.4E-15 2E-19 161.4 19.3 231 377-713 22-262 (393)
118 TIGR00858 bioF 8-amino-7-oxono 99.6 2E-14 4.3E-19 155.8 19.0 223 379-712 3-237 (360)
119 PLN02483 serine palmitoyltrans 99.6 1.8E-13 3.9E-18 156.3 20.8 245 372-713 75-332 (489)
120 COG0857 Pta BioD-like N-termin 99.5 1E-13 2.2E-18 150.6 14.7 198 36-322 1-212 (354)
121 cd06454 KBL_like KBL_like; thi 99.5 1.3E-12 2.7E-17 141.4 16.4 212 400-713 2-223 (349)
122 KOG1360 5-aminolevulinate synt 99.4 1.2E-12 2.7E-17 139.6 12.8 207 410-716 179-397 (570)
123 cd00613 GDC-P Glycine cleavage 99.4 5.7E-12 1.2E-16 139.3 15.3 209 406-711 23-246 (398)
124 TIGR03576 pyridox_MJ0158 pyrid 99.2 1.6E-10 3.6E-15 126.5 15.0 196 410-716 27-229 (346)
125 PRK09331 Sep-tRNA:Cys-tRNA syn 99.0 1.3E-08 2.8E-13 113.1 17.8 211 411-714 27-244 (387)
126 cd00609 AAT_like Aspartate ami 99.0 5.3E-09 1.1E-13 112.2 14.3 94 617-713 130-229 (350)
127 KOG1357 Serine palmitoyltransf 98.9 1.8E-08 3.9E-13 109.9 15.2 246 371-715 110-370 (519)
128 PLN02721 threonine aldolase 98.9 2.6E-08 5.7E-13 108.1 16.8 217 400-711 6-228 (353)
129 cd01494 AAT_I Aspartate aminot 98.9 1.9E-08 4.1E-13 96.3 13.7 79 617-704 90-170 (170)
130 PRK03317 histidinol-phosphate 98.9 2.5E-08 5.4E-13 109.7 16.2 99 602-713 150-252 (368)
131 TIGR02539 SepCysS Sep-tRNA:Cys 98.9 2.8E-08 6E-13 109.7 14.3 87 619-716 146-234 (370)
132 PRK13520 L-tyrosine decarboxyl 98.8 5.9E-08 1.3E-12 106.2 15.6 206 414-712 30-243 (371)
133 TIGR01325 O_suc_HS_sulf O-succ 98.8 4.3E-08 9.3E-13 108.8 13.4 172 439-712 50-224 (380)
134 PRK13034 serine hydroxymethylt 98.7 2.1E-07 4.5E-12 104.7 17.0 195 418-707 41-247 (416)
135 PRK06225 aspartate aminotransf 98.7 2.8E-07 6.2E-12 101.8 17.8 216 400-712 29-248 (380)
136 cd00614 CGS_like CGS_like: Cys 98.7 1.4E-07 3.1E-12 104.2 12.9 171 440-712 37-211 (369)
137 cd00616 AHBA_syn 3-amino-5-hyd 98.6 3.5E-07 7.5E-12 99.3 14.1 167 442-711 17-189 (352)
138 TIGR01326 OAH_OAS_sulfhy OAH/O 98.6 1.8E-07 4E-12 105.1 12.0 163 440-705 54-219 (418)
139 cd06452 SepCysS Sep-tRNA:Cys-t 98.6 7.2E-07 1.6E-11 97.9 16.1 208 413-713 10-224 (361)
140 cd06502 TA_like Low-specificit 98.6 9.3E-07 2E-11 95.4 16.0 209 403-712 1-217 (338)
141 TIGR02006 IscS cysteine desulf 98.6 7.9E-07 1.7E-11 99.2 15.7 208 400-708 5-221 (402)
142 TIGR03402 FeS_nifS cysteine de 98.6 1E-06 2.2E-11 97.3 15.2 205 401-707 2-214 (379)
143 PRK07682 hypothetical protein; 98.6 3.2E-06 6.9E-11 93.3 19.1 206 418-712 35-249 (378)
144 TIGR01007 eps_fam capsular exo 98.6 2.5E-06 5.4E-11 86.3 16.8 63 221-289 128-190 (204)
145 TIGR03301 PhnW-AepZ 2-aminoeth 98.5 1.8E-06 3.8E-11 93.7 15.9 194 418-712 11-209 (355)
146 TIGR01969 minD_arch cell divis 98.5 3.7E-06 8.1E-11 87.1 16.2 102 193-316 94-200 (251)
147 PRK06108 aspartate aminotransf 98.5 6.3E-06 1.4E-10 90.8 18.9 222 400-712 25-255 (382)
148 cd02037 MRP-like MRP (Multiple 98.4 1.1E-05 2.4E-10 79.2 17.1 89 220-314 67-169 (169)
149 TIGR01437 selA_rel uncharacter 98.4 1.1E-05 2.5E-10 89.0 18.6 71 400-481 9-80 (363)
150 PRK14012 cysteine desulfurase; 98.4 4.6E-06 9.9E-11 93.1 15.5 208 400-707 5-222 (404)
151 TIGR03235 DNA_S_dndA cysteine 98.4 4.5E-06 9.8E-11 91.2 15.2 203 412-708 6-217 (353)
152 PRK05994 O-acetylhomoserine am 98.4 2.4E-06 5.1E-11 96.5 12.8 162 440-704 60-224 (427)
153 PLN02242 methionine gamma-lyas 98.4 2.9E-06 6.4E-11 95.5 13.3 172 440-712 73-247 (418)
154 TIGR01141 hisC histidinol-phos 98.4 5.1E-06 1.1E-10 90.4 14.2 209 400-713 20-234 (346)
155 PRK15407 lipopolysaccharide bi 98.4 6.6E-06 1.4E-10 93.2 15.4 171 443-708 63-238 (438)
156 PRK02731 histidinol-phosphate 98.4 8E-06 1.7E-10 89.6 15.7 209 400-713 33-249 (367)
157 cd06451 AGAT_like Alanine-glyo 98.3 5.4E-06 1.2E-10 90.4 14.1 195 418-712 11-208 (356)
158 PRK07777 aminotransferase; Val 98.3 1.9E-05 4.1E-10 87.6 18.4 91 619-712 159-255 (387)
159 cd06453 SufS_like Cysteine des 98.3 1.2E-05 2.6E-10 88.3 16.7 208 412-712 7-222 (373)
160 KOG1358 Serine palmitoyltransf 98.3 2E-06 4.4E-11 92.8 10.0 214 375-691 77-306 (467)
161 PLN02651 cysteine desulfurase 98.3 7.8E-06 1.7E-10 89.9 14.5 205 413-711 8-220 (364)
162 CHL00175 minD septum-site dete 98.3 6.5E-06 1.4E-10 87.5 13.4 87 221-316 127-222 (281)
163 TIGR01977 am_tr_V_EF2568 cyste 98.3 8.8E-06 1.9E-10 89.3 14.8 78 619-707 137-216 (376)
164 PRK13238 tnaA tryptophanase/L- 98.3 2.2E-05 4.7E-10 89.6 18.2 102 602-712 164-282 (460)
165 PF00155 Aminotran_1_2: Aminot 98.3 1.5E-05 3.3E-10 87.0 16.1 104 602-712 133-244 (363)
166 TIGR00474 selA seryl-tRNA(sec) 98.3 2.3E-05 5.1E-10 89.0 17.9 197 418-712 94-309 (454)
167 PRK00950 histidinol-phosphate 98.3 1.2E-05 2.6E-10 87.9 15.0 84 622-713 162-247 (361)
168 TIGR01324 cysta_beta_ly_B cyst 98.3 5.4E-06 1.2E-10 92.1 12.4 170 440-711 47-219 (377)
169 TIGR01968 minD_bact septum sit 98.3 7.8E-06 1.7E-10 85.1 12.9 101 193-315 97-206 (261)
170 PRK03158 histidinol-phosphate 98.3 1E-05 2.2E-10 88.7 14.0 210 400-713 30-246 (359)
171 PRK06084 O-acetylhomoserine am 98.3 6.2E-06 1.4E-10 93.0 12.3 163 440-704 55-219 (425)
172 PRK10874 cysteine sulfinate de 98.2 2.9E-05 6.4E-10 86.4 17.1 213 400-711 21-242 (401)
173 PRK00011 glyA serine hydroxyme 98.2 4.4E-05 9.4E-10 85.5 18.1 92 602-712 155-250 (416)
174 PRK04311 selenocysteine syntha 98.2 3.6E-05 7.9E-10 87.7 17.4 196 418-712 99-314 (464)
175 PRK08960 hypothetical protein; 98.2 9E-05 1.9E-09 82.2 20.1 204 418-712 47-257 (387)
176 PRK05764 aspartate aminotransf 98.2 4.1E-05 8.8E-10 84.9 17.2 88 621-712 167-261 (393)
177 TIGR02326 transamin_PhnW 2-ami 98.2 1.9E-05 4.2E-10 86.6 14.4 72 631-712 140-213 (363)
178 TIGR01814 kynureninase kynuren 98.2 2.3E-05 5E-10 87.6 15.0 90 602-706 159-248 (406)
179 PLN03226 serine hydroxymethylt 98.2 3E-05 6.5E-10 88.7 15.8 88 602-708 173-263 (475)
180 TIGR03392 FeS_syn_CsdA cystein 98.2 4.4E-05 9.4E-10 84.9 16.8 213 400-711 18-239 (398)
181 PRK09295 bifunctional cysteine 98.2 5.3E-05 1.1E-09 84.6 16.9 213 400-711 25-246 (406)
182 PRK11658 UDP-4-amino-4-deoxy-L 98.1 3.2E-05 6.9E-10 85.9 14.9 185 419-711 14-203 (379)
183 PRK09082 methionine aminotrans 98.1 8.2E-05 1.8E-09 82.6 17.7 220 400-712 31-259 (386)
184 PRK02948 cysteine desulfurase; 98.1 3.5E-05 7.7E-10 85.1 14.7 207 400-707 2-216 (381)
185 TIGR02379 ECA_wecE TDP-4-keto- 98.1 4.4E-05 9.6E-10 84.8 15.5 188 419-712 11-204 (376)
186 PRK06767 methionine gamma-lyas 98.1 2.2E-05 4.7E-10 87.5 13.0 80 619-710 146-229 (386)
187 PRK08133 O-succinylhomoserine 98.1 2.4E-05 5.2E-10 87.3 13.4 80 619-710 146-229 (390)
188 TIGR01328 met_gam_lyase methio 98.1 2.5E-05 5.5E-10 87.2 13.5 82 619-712 144-229 (391)
189 TIGR01976 am_tr_V_VC1184 cyste 98.1 0.00013 2.7E-09 81.0 18.5 208 400-712 19-238 (397)
190 PRK10534 L-threonine aldolase; 98.1 6.5E-05 1.4E-09 81.3 15.6 68 401-481 1-69 (333)
191 PRK07324 transaminase; Validat 98.1 8.6E-05 1.9E-09 82.2 16.6 88 620-712 154-245 (373)
192 PRK08153 histidinol-phosphate 98.1 4.4E-05 9.5E-10 84.3 14.2 85 622-713 159-247 (369)
193 PRK07309 aromatic amino acid a 98.1 0.0002 4.4E-09 79.6 19.6 100 602-712 154-260 (391)
194 PRK07550 hypothetical protein; 98.1 0.00021 4.5E-09 79.2 19.0 99 602-712 154-259 (386)
195 PRK07050 cystathionine beta-ly 98.0 4.7E-05 1E-09 85.2 13.4 170 439-711 61-235 (394)
196 cd02036 MinD Bacterial cell di 98.0 2.9E-05 6.2E-10 76.0 10.4 85 222-315 64-155 (179)
197 PRK06207 aspartate aminotransf 98.0 0.00029 6.2E-09 79.0 19.7 231 394-712 34-274 (405)
198 PLN00175 aminotransferase fami 98.0 0.0002 4.2E-09 80.6 18.4 91 619-712 187-282 (413)
199 cd00615 Orn_deC_like Ornithine 98.0 4.9E-05 1.1E-09 81.4 12.7 80 602-693 143-224 (294)
200 PRK07503 methionine gamma-lyas 98.0 5.2E-05 1.1E-09 85.1 13.4 83 619-712 150-235 (403)
201 PRK08361 aspartate aminotransf 98.0 0.00022 4.9E-09 79.2 18.0 88 620-711 167-259 (391)
202 PRK07568 aspartate aminotransf 98.0 0.00022 4.8E-09 79.1 17.8 88 620-711 163-258 (397)
203 TIGR03588 PseC UDP-4-keto-6-de 98.0 0.00013 2.9E-09 80.7 15.9 188 419-710 10-205 (380)
204 TIGR03812 tyr_de_CO2_Arch tyro 98.0 0.00015 3.2E-09 79.6 16.0 205 418-711 33-247 (373)
205 cd00378 SHMT Serine-glycine hy 98.0 0.00018 3.8E-09 80.0 16.7 92 602-712 151-246 (402)
206 PF01656 CbiA: CobQ/CobB/MinD/ 98.0 3.7E-05 7.9E-10 76.3 9.9 68 221-295 95-164 (195)
207 TIGR03029 EpsG chain length de 98.0 0.0002 4.3E-09 75.8 15.9 63 220-288 212-274 (274)
208 cd02033 BchX Chlorophyllide re 98.0 8.5E-05 1.8E-09 81.0 13.3 92 220-317 147-245 (329)
209 PRK06234 methionine gamma-lyas 98.0 8.1E-05 1.8E-09 83.4 13.4 170 440-712 61-236 (400)
210 TIGR01979 sufS cysteine desulf 98.0 0.00024 5.2E-09 79.0 17.0 214 400-711 20-241 (403)
211 PRK13479 2-aminoethylphosphona 97.9 0.00015 3.2E-09 79.6 15.2 74 630-713 141-216 (368)
212 PRK08249 cystathionine gamma-s 97.9 6.9E-05 1.5E-09 83.9 12.5 169 440-711 61-233 (398)
213 PRK07810 O-succinylhomoserine 97.9 0.00011 2.3E-09 82.5 13.8 167 440-709 67-237 (403)
214 PRK06176 cystathionine gamma-s 97.9 8.7E-05 1.9E-09 82.6 12.8 81 619-710 134-218 (380)
215 cd06450 DOPA_deC_like DOPA dec 97.9 8.4E-05 1.8E-09 80.5 12.3 76 621-703 151-229 (345)
216 PRK08574 cystathionine gamma-s 97.9 0.00012 2.5E-09 81.8 13.2 167 440-711 50-222 (385)
217 PRK08068 transaminase; Reviewe 97.9 0.00065 1.4E-08 75.5 19.1 88 621-712 170-263 (389)
218 TIGR01140 L_thr_O3P_dcar L-thr 97.9 0.0001 2.2E-09 80.1 12.5 87 621-713 128-218 (330)
219 COG0075 Serine-pyruvate aminot 97.9 0.00018 3.8E-09 79.6 14.1 200 418-715 17-218 (383)
220 PRK15481 transcriptional regul 97.9 0.00064 1.4E-08 76.7 19.1 97 602-712 202-304 (431)
221 TIGR03018 pepcterm_TyrKin exop 97.9 0.00039 8.5E-09 70.7 15.6 75 194-287 133-207 (207)
222 PRK08912 hypothetical protein; 97.9 0.00074 1.6E-08 74.9 19.0 88 621-712 162-255 (387)
223 PLN02409 serine--glyoxylate am 97.9 0.0001 2.2E-09 82.4 12.2 198 418-712 21-223 (401)
224 PRK07811 cystathionine gamma-s 97.9 0.00015 3.2E-09 81.0 13.3 169 440-710 58-230 (388)
225 PRK12414 putative aminotransfe 97.9 0.00066 1.4E-08 75.4 18.5 220 400-712 30-258 (384)
226 COG0489 Mrp ATPases involved i 97.9 0.00061 1.3E-08 72.3 17.2 87 220-315 166-260 (265)
227 PRK08247 cystathionine gamma-s 97.9 0.00016 3.5E-09 80.0 13.3 168 440-711 49-221 (366)
228 PRK07812 O-acetylhomoserine am 97.8 0.00015 3.3E-09 82.2 13.3 162 440-703 66-230 (436)
229 PF01212 Beta_elim_lyase: Beta 97.8 6.9E-05 1.5E-09 80.4 10.0 199 416-708 7-212 (290)
230 PLN02855 Bifunctional selenocy 97.8 0.00049 1.1E-08 77.4 17.0 214 400-711 34-255 (424)
231 PRK07504 O-succinylhomoserine 97.8 0.00013 2.8E-09 81.7 12.1 78 619-708 150-231 (398)
232 PRK07049 methionine gamma-lyas 97.8 0.00024 5.1E-09 80.4 14.2 176 440-712 80-265 (427)
233 COG2008 GLY1 Threonine aldolas 97.8 0.00031 6.7E-09 76.0 14.0 58 418-481 13-70 (342)
234 PRK07683 aminotransferase A; V 97.8 0.00097 2.1E-08 74.1 18.5 86 623-712 166-256 (387)
235 COG1149 MinD superfamily P-loo 97.8 0.00029 6.3E-09 73.7 13.1 102 194-316 149-252 (284)
236 PRK11670 antiporter inner memb 97.8 0.0016 3.5E-08 72.3 19.9 89 220-316 215-319 (369)
237 COG3640 CooC CO dehydrogenase 97.8 0.00029 6.3E-09 72.4 12.8 114 189-321 113-228 (255)
238 PRK08248 O-acetylhomoserine am 97.8 0.0002 4.4E-09 81.0 12.9 161 440-703 61-224 (431)
239 PRK05957 aspartate aminotransf 97.8 0.00083 1.8E-08 74.7 17.7 90 620-712 161-256 (389)
240 PF00266 Aminotran_5: Aminotra 97.8 0.0004 8.6E-09 76.5 15.0 209 411-712 6-222 (371)
241 PRK08636 aspartate aminotransf 97.8 0.0015 3.3E-08 73.0 19.6 102 602-712 163-271 (403)
242 PF01041 DegT_DnrJ_EryC1: DegT 97.8 0.00033 7.2E-09 77.3 13.9 186 419-710 5-195 (363)
243 TIGR02016 BchX chlorophyllide 97.8 0.00052 1.1E-08 73.9 15.0 92 220-317 122-220 (296)
244 PRK05968 hypothetical protein; 97.8 0.00019 4.1E-09 80.1 12.0 80 621-712 149-232 (389)
245 PRK06460 hypothetical protein; 97.8 0.00029 6.4E-09 78.3 13.4 82 619-712 130-215 (376)
246 TIGR02080 O_succ_thio_ly O-suc 97.7 0.00024 5.3E-09 79.1 12.7 170 439-711 47-221 (382)
247 TIGR03537 DapC succinyldiamino 97.7 0.0017 3.6E-08 71.1 19.0 86 622-712 140-229 (350)
248 PRK05939 hypothetical protein; 97.7 0.0002 4.4E-09 80.2 11.9 160 440-703 44-206 (397)
249 PRK07269 cystathionine gamma-s 97.7 0.00038 8.2E-09 77.1 13.8 167 440-711 51-221 (364)
250 PRK07671 cystathionine beta-ly 97.7 0.00036 7.7E-09 77.7 13.6 82 619-711 134-219 (377)
251 cd03110 Fer4_NifH_child This p 97.7 0.0017 3.8E-08 64.0 17.1 84 220-311 92-179 (179)
252 PRK08175 aminotransferase; Val 97.7 0.0019 4E-08 72.0 19.3 103 602-712 152-260 (395)
253 PRK08354 putative aminotransfe 97.7 0.00091 2E-08 72.1 16.2 185 400-704 9-197 (311)
254 TIGR03403 nifS_epsilon cystein 97.7 0.0013 2.7E-08 72.9 17.7 74 620-706 141-217 (382)
255 COG1104 NifS Cysteine sulfinat 97.7 0.00041 8.9E-09 76.5 13.3 209 400-707 3-219 (386)
256 PRK08056 threonine-phosphate d 97.7 0.0014 3E-08 71.9 17.7 87 622-712 146-236 (356)
257 PRK06348 aspartate aminotransf 97.7 0.0016 3.5E-08 72.2 18.4 87 622-712 166-257 (384)
258 PRK11706 TDP-4-oxo-6-deoxy-D-g 97.7 0.00073 1.6E-08 74.9 15.2 183 420-709 12-200 (375)
259 PRK14807 histidinol-phosphate 97.7 0.00078 1.7E-08 73.8 15.3 197 418-713 37-237 (351)
260 PRK07681 aspartate aminotransf 97.7 0.0021 4.7E-08 71.6 19.0 89 620-712 167-262 (399)
261 TIGR01329 cysta_beta_ly_E cyst 97.7 0.00034 7.3E-09 77.9 12.5 80 619-709 131-214 (378)
262 cd00550 ArsA_ATPase Oxyanion-t 97.7 0.00057 1.2E-08 72.0 13.5 64 252-315 162-241 (254)
263 PRK09276 LL-diaminopimelate am 97.7 0.0028 6.1E-08 70.2 19.8 90 619-712 166-262 (385)
264 PRK08045 cystathionine gamma-s 97.7 0.00034 7.4E-09 78.1 12.5 169 440-711 49-222 (386)
265 PRK06107 aspartate aminotransf 97.7 0.0024 5.2E-08 71.4 19.1 221 400-712 34-264 (402)
266 PRK03321 putative aminotransfe 97.7 0.00048 1E-08 75.3 13.1 87 621-713 147-240 (352)
267 PLN02509 cystathionine beta-ly 97.7 0.00041 9E-09 79.2 12.9 73 619-703 217-292 (464)
268 TIGR03815 CpaE_hom_Actino heli 97.7 0.0065 1.4E-07 66.0 21.7 86 220-315 204-292 (322)
269 PRK09148 aminotransferase; Val 97.6 0.0022 4.8E-08 71.8 18.3 89 620-712 167-261 (405)
270 PRK08861 cystathionine gamma-s 97.6 0.00049 1.1E-08 76.9 12.8 168 440-710 50-222 (388)
271 PRK09841 cryptic autophosphory 97.6 0.001 2.2E-08 80.2 16.1 63 221-289 641-703 (726)
272 TIGR03540 DapC_direct LL-diami 97.6 0.0036 7.7E-08 69.3 19.3 90 619-712 164-260 (383)
273 PLN00145 tyrosine/nicotianamin 97.6 0.0049 1.1E-07 69.8 20.8 216 400-703 53-276 (430)
274 PRK08064 cystathionine beta-ly 97.6 0.00052 1.1E-08 76.7 12.5 81 619-711 138-223 (390)
275 PRK07337 aminotransferase; Val 97.6 0.0028 6E-08 70.4 18.3 87 620-712 165-255 (388)
276 PRK14494 putative molybdopteri 97.6 0.00029 6.3E-09 73.0 9.7 50 37-92 1-51 (229)
277 TIGR03539 DapC_actino succinyl 97.6 0.0018 3.9E-08 71.1 16.6 91 619-712 142-240 (357)
278 PLN02656 tyrosine transaminase 97.6 0.0073 1.6E-07 67.7 21.7 82 619-704 170-256 (409)
279 PRK05613 O-acetylhomoserine am 97.6 0.00047 1E-08 78.2 12.0 154 439-693 65-220 (437)
280 PRK08363 alanine aminotransfer 97.6 0.0029 6.2E-08 70.5 18.1 85 621-709 169-259 (398)
281 PRK14809 histidinol-phosphate 97.6 0.0022 4.7E-08 70.4 16.9 87 622-713 158-246 (357)
282 PRK09105 putative aminotransfe 97.6 0.0012 2.7E-08 73.0 15.0 209 400-712 44-256 (370)
283 PRK00771 signal recognition pa 97.6 0.0082 1.8E-07 68.0 21.6 44 29-78 87-130 (437)
284 PRK11519 tyrosine kinase; Prov 97.6 0.00083 1.8E-08 80.9 14.4 63 221-289 636-698 (719)
285 PRK05942 aspartate aminotransf 97.6 0.0031 6.7E-08 70.2 18.1 90 619-712 170-266 (394)
286 PRK05967 cystathionine beta-ly 97.6 0.00053 1.1E-08 76.8 11.8 170 440-711 61-233 (395)
287 PRK09028 cystathionine beta-ly 97.6 0.00063 1.4E-08 76.2 12.4 82 619-711 146-230 (394)
288 PRK08134 O-acetylhomoserine am 97.5 0.00059 1.3E-08 77.3 12.2 152 440-693 61-214 (433)
289 PRK04366 glycine dehydrogenase 97.5 0.0015 3.3E-08 75.0 15.5 203 418-711 83-297 (481)
290 PRK13355 bifunctional HTH-doma 97.5 0.0029 6.2E-08 73.3 17.9 215 400-704 147-368 (517)
291 PRK09147 succinyldiaminopimela 97.5 0.0068 1.5E-07 67.5 20.0 87 622-712 170-268 (396)
292 PRK07582 cystathionine gamma-l 97.5 0.00075 1.6E-08 74.8 12.2 80 619-711 132-217 (366)
293 PTZ00094 serine hydroxymethylt 97.5 0.0022 4.7E-08 73.1 16.0 68 632-708 192-262 (452)
294 COG2894 MinD Septum formation 97.5 0.00071 1.5E-08 68.8 10.5 194 37-315 2-215 (272)
295 PRK07366 succinyldiaminopimela 97.5 0.0055 1.2E-07 68.0 18.6 87 622-712 169-262 (388)
296 TIGR02618 tyr_phenol_ly tyrosi 97.5 0.0009 1.9E-08 75.5 12.2 102 601-711 156-274 (450)
297 PRK12566 glycine dehydrogenase 97.5 0.0015 3.2E-08 79.4 14.6 181 442-712 542-731 (954)
298 TIGR00064 ftsY signal recognit 97.4 0.0073 1.6E-07 64.4 18.2 37 36-78 71-107 (272)
299 PRK08114 cystathionine beta-ly 97.4 0.00097 2.1E-08 74.7 12.0 171 439-711 58-233 (395)
300 PRK06290 aspartate aminotransf 97.4 0.0087 1.9E-07 67.3 19.5 90 619-712 179-274 (410)
301 PRK10867 signal recognition pa 97.4 0.0081 1.8E-07 68.0 19.1 83 220-310 183-273 (433)
302 PRK06836 aspartate aminotransf 97.4 0.0088 1.9E-07 66.7 19.0 85 620-708 169-263 (394)
303 PTZ00433 tyrosine aminotransfe 97.4 0.007 1.5E-07 67.9 18.3 80 620-703 178-263 (412)
304 cd00617 Tnase_like Tryptophana 97.4 0.0011 2.4E-08 75.0 11.8 58 601-664 138-196 (431)
305 TIGR03538 DapC_gpp succinyldia 97.4 0.01 2.2E-07 66.0 19.4 89 620-712 166-267 (393)
306 PRK07392 threonine-phosphate d 97.4 0.0023 4.9E-08 70.4 13.9 86 619-712 149-239 (360)
307 PRK05367 glycine dehydrogenase 97.4 0.0031 6.6E-08 77.8 16.2 180 443-712 542-730 (954)
308 PLN00143 tyrosine/nicotianamin 97.4 0.016 3.5E-07 65.0 20.8 82 618-703 170-256 (409)
309 cd02117 NifH_like This family 97.4 0.0035 7.6E-08 63.9 14.1 90 220-313 116-212 (212)
310 PRK06358 threonine-phosphate d 97.4 0.005 1.1E-07 67.7 16.3 212 400-712 20-237 (354)
311 PRK09265 aminotransferase AlaT 97.4 0.015 3.2E-07 65.1 20.3 77 621-703 171-254 (404)
312 PRK07865 N-succinyldiaminopime 97.4 0.0063 1.4E-07 66.9 17.1 91 619-712 148-246 (364)
313 COG1103 Archaea-specific pyrid 97.4 0.0026 5.7E-08 66.4 12.9 180 441-713 59-241 (382)
314 TIGR00959 ffh signal recogniti 97.4 0.009 1.9E-07 67.6 18.4 83 220-310 182-272 (428)
315 PRK08776 cystathionine gamma-s 97.3 0.0027 5.9E-08 71.4 14.1 82 619-711 145-230 (405)
316 PRK13185 chlL protochlorophyll 97.3 0.0031 6.7E-08 66.5 13.6 90 220-317 117-212 (270)
317 PRK06702 O-acetylhomoserine am 97.3 0.0023 4.9E-08 72.5 13.1 152 441-693 59-212 (432)
318 COG0436 Aspartate/tyrosine/aro 97.3 0.0091 2E-07 66.9 17.5 201 418-712 43-260 (393)
319 COG1168 MalY Bifunctional PLP- 97.3 0.01 2.2E-07 64.9 16.7 95 601-707 147-250 (388)
320 PLN03026 histidinol-phosphate 97.2 0.006 1.3E-07 67.8 15.4 84 620-712 176-263 (380)
321 PRK01533 histidinol-phosphate 97.2 0.0043 9.2E-08 68.7 14.2 211 400-712 30-245 (366)
322 cd02035 ArsA ArsA ATPase funct 97.2 0.0036 7.9E-08 64.2 12.6 63 221-289 114-180 (217)
323 TIGR03531 selenium_SpcS O-phos 97.2 0.0046 1E-07 70.2 14.5 185 442-712 104-296 (444)
324 TIGR01264 tyr_amTase_E tyrosin 97.2 0.02 4.4E-07 63.8 19.6 79 621-704 170-255 (401)
325 cd02040 NifH NifH gene encodes 97.2 0.0038 8.3E-08 65.5 13.0 36 37-78 1-36 (270)
326 PRK05664 threonine-phosphate d 97.2 0.0052 1.1E-07 66.8 14.4 86 621-713 127-216 (330)
327 PRK05387 histidinol-phosphate 97.2 0.0061 1.3E-07 66.4 15.0 82 621-712 147-233 (353)
328 KOG1368 Threonine aldolase [Am 97.2 0.003 6.5E-08 66.8 11.6 99 601-710 136-244 (384)
329 PRK06425 histidinol-phosphate 97.2 0.0041 8.8E-08 67.7 13.3 89 621-713 125-217 (332)
330 PF01053 Cys_Met_Meta_PP: Cys/ 97.2 0.0031 6.7E-08 70.5 12.6 171 439-711 51-227 (386)
331 PLN02672 methionine S-methyltr 97.2 0.01 2.2E-07 73.7 17.9 228 388-712 690-934 (1082)
332 KOG3022 Predicted ATPase, nucl 97.2 0.0044 9.5E-08 65.2 12.6 89 220-316 156-261 (300)
333 TIGR01425 SRP54_euk signal rec 97.2 0.042 9.2E-07 62.1 21.4 115 220-343 182-310 (429)
334 PRK13237 tyrosine phenol-lyase 97.2 0.0047 1E-07 70.0 13.7 57 602-664 164-221 (460)
335 TIGR01265 tyr_nico_aTase tyros 97.2 0.019 4.1E-07 64.2 18.6 80 621-704 172-256 (403)
336 TIGR00461 gcvP glycine dehydro 97.1 0.0055 1.2E-07 74.9 14.7 180 443-711 530-717 (939)
337 PRK05839 hypothetical protein; 97.1 0.021 4.5E-07 63.2 18.3 88 621-712 158-255 (374)
338 PLN03032 serine decarboxylase; 97.1 0.012 2.7E-07 65.5 16.2 98 602-712 149-256 (374)
339 COG0455 flhG Antiactivator of 97.1 0.019 4.1E-07 60.9 16.6 102 192-314 97-206 (262)
340 PLN02414 glycine dehydrogenase 97.1 0.0074 1.6E-07 74.5 15.4 183 442-712 567-756 (993)
341 PRK11889 flhF flagellar biosyn 97.1 0.023 5E-07 63.4 17.7 37 36-78 240-276 (436)
342 PLN02187 rooty/superroot1 97.1 0.014 2.9E-07 66.9 16.7 83 618-704 204-291 (462)
343 PRK06855 aminotransferase; Val 97.1 0.018 4E-07 65.1 17.6 91 602-703 160-257 (433)
344 COG2873 MET17 O-acetylhomoseri 97.1 0.0021 4.6E-08 69.8 9.3 194 412-711 34-230 (426)
345 TIGR01005 eps_transp_fam exopo 97.1 0.0054 1.2E-07 74.4 13.9 64 220-289 655-718 (754)
346 PRK04870 histidinol-phosphate 97.1 0.011 2.4E-07 64.7 15.1 209 400-712 27-240 (356)
347 PRK14974 cell division protein 97.0 0.016 3.4E-07 63.6 15.8 36 37-78 140-175 (336)
348 PRK05703 flhF flagellar biosyn 97.0 0.0099 2.1E-07 67.3 14.5 38 37-78 221-258 (424)
349 cd02032 Bchl_like This family 97.0 0.008 1.7E-07 63.4 12.9 90 220-317 115-210 (267)
350 PRK12727 flagellar biosynthesi 97.0 0.023 5E-07 65.4 17.3 61 13-78 327-387 (559)
351 PRK10416 signal recognition pa 97.0 0.04 8.7E-07 60.1 18.6 36 37-78 114-149 (318)
352 PRK13232 nifH nitrogenase redu 97.0 0.0083 1.8E-07 63.6 12.5 90 220-315 116-213 (273)
353 TIGR01281 DPOR_bchL light-inde 97.0 0.0076 1.6E-07 63.5 12.1 88 220-315 115-208 (268)
354 PF02374 ArsA_ATPase: Anion-tr 97.0 0.0015 3.2E-08 70.8 6.8 62 253-315 210-288 (305)
355 PRK14495 putative molybdopteri 97.0 0.0032 6.8E-08 70.7 9.5 37 37-79 1-37 (452)
356 cd03115 SRP The signal recogni 96.9 0.042 9.2E-07 53.9 16.4 33 40-78 3-35 (173)
357 PRK12723 flagellar biosynthesi 96.9 0.026 5.6E-07 63.1 16.5 86 220-310 254-345 (388)
358 TIGR00176 mobB molybdopterin-g 96.9 0.0051 1.1E-07 60.0 9.6 39 40-84 2-40 (155)
359 PRK09257 aromatic amino acid a 96.9 0.029 6.3E-07 62.5 16.8 71 630-702 182-259 (396)
360 PRK12726 flagellar biosynthesi 96.9 0.042 9E-07 61.1 17.4 37 36-78 205-241 (407)
361 cd02038 FleN-like FleN is a me 96.9 0.014 3.1E-07 55.5 12.3 84 221-311 45-139 (139)
362 PRK02769 histidine decarboxyla 96.9 0.033 7.2E-07 62.2 16.9 95 602-711 148-252 (380)
363 PLN02376 1-aminocyclopropane-1 96.9 0.04 8.7E-07 63.7 18.0 88 619-710 199-301 (496)
364 PRK10818 cell division inhibit 96.9 0.052 1.1E-06 57.2 17.5 38 36-78 1-38 (270)
365 PHA02518 ParA-like protein; Pr 96.8 0.044 9.5E-07 55.1 16.0 36 38-78 1-36 (211)
366 PLN02607 1-aminocyclopropane-1 96.8 0.028 6E-07 64.1 16.0 91 617-711 198-302 (447)
367 TIGR03799 NOD_PanD_pyr putativ 96.8 0.024 5.2E-07 65.9 15.6 102 602-711 250-355 (522)
368 PRK03967 histidinol-phosphate 96.8 0.026 5.7E-07 61.5 15.1 82 621-713 143-228 (337)
369 COG0541 Ffh Signal recognition 96.8 0.13 2.9E-06 57.5 20.2 116 220-344 182-311 (451)
370 PLN02880 tyrosine decarboxylas 96.8 0.012 2.6E-07 67.8 12.8 96 602-705 224-322 (490)
371 CHL00072 chlL photochlorophyll 96.8 0.016 3.5E-07 62.2 12.8 88 220-315 115-208 (290)
372 TIGR03542 DAPAT_plant LL-diami 96.7 0.06 1.3E-06 60.2 17.7 84 621-708 176-265 (402)
373 KOG0259 Tyrosine aminotransfer 96.7 0.032 7E-07 61.0 14.6 54 601-664 189-242 (447)
374 PRK05166 histidinol-phosphate 96.7 0.023 4.9E-07 62.8 14.0 86 622-712 163-255 (371)
375 PF01276 OKR_DC_1: Orn/Lys/Arg 96.7 0.006 1.3E-07 68.6 9.2 165 443-693 66-244 (417)
376 KOG1549 Cysteine desulfurase N 96.7 0.022 4.9E-07 63.5 13.4 207 400-705 45-257 (428)
377 cd03113 CTGs CTP synthetase (C 96.7 0.016 3.4E-07 60.3 11.3 106 194-314 117-239 (255)
378 TIGR01287 nifH nitrogenase iro 96.7 0.025 5.4E-07 59.9 13.2 34 39-78 2-35 (275)
379 cd03116 MobB Molybdenum is an 96.6 0.013 2.8E-07 57.5 10.1 41 37-83 1-41 (159)
380 TIGR03371 cellulose_yhjQ cellu 96.6 0.049 1.1E-06 56.3 15.0 37 37-78 1-37 (246)
381 PRK07908 hypothetical protein; 96.6 0.039 8.5E-07 60.3 15.0 82 622-713 143-228 (349)
382 PRK00451 glycine dehydrogenase 96.6 0.026 5.5E-07 64.0 13.8 88 602-711 195-290 (447)
383 PTZ00376 aspartate aminotransf 96.6 0.058 1.3E-06 60.4 16.5 100 602-709 164-274 (404)
384 PRK13230 nitrogenase reductase 96.6 0.015 3.4E-07 61.7 11.2 36 37-78 1-36 (279)
385 PTZ00377 alanine aminotransfer 96.6 0.051 1.1E-06 62.4 16.2 90 619-712 218-326 (481)
386 COG0520 csdA Selenocysteine ly 96.6 0.071 1.5E-06 60.1 16.9 214 400-711 24-245 (405)
387 PRK01688 histidinol-phosphate 96.5 0.012 2.6E-07 64.6 10.2 86 621-713 148-237 (351)
388 PRK14808 histidinol-phosphate 96.5 0.031 6.7E-07 61.0 13.3 81 621-712 141-225 (335)
389 TIGR01788 Glu-decarb-GAD gluta 96.5 0.045 9.8E-07 62.2 15.0 89 602-706 177-277 (431)
390 PF06564 YhjQ: YhjQ protein; 96.5 0.1 2.2E-06 54.7 16.3 37 37-78 1-37 (243)
391 PRK15029 arginine decarboxylas 96.5 0.019 4E-07 69.2 12.3 152 444-674 206-361 (755)
392 PLN02231 alanine transaminase 96.5 0.081 1.8E-06 61.7 17.2 104 602-711 256-377 (534)
393 PRK07590 L,L-diaminopimelate a 96.5 0.11 2.3E-06 58.3 17.6 84 622-709 180-269 (409)
394 COG1703 ArgK Putative periplas 96.4 0.078 1.7E-06 56.7 14.9 36 37-78 51-86 (323)
395 PRK14493 putative bifunctional 96.4 0.017 3.7E-07 61.6 10.1 36 37-79 1-36 (274)
396 COG1348 NifH Nitrogenase subun 96.4 0.096 2.1E-06 54.1 14.8 88 221-317 118-217 (278)
397 PRK13231 nitrogenase reductase 96.4 0.036 7.8E-07 58.3 12.5 93 220-316 113-208 (264)
398 PRK13233 nifH nitrogenase redu 96.4 0.019 4E-07 60.9 10.3 36 37-78 2-38 (275)
399 PRK13849 putative crown gall t 96.4 0.16 3.5E-06 52.8 17.0 37 37-78 1-37 (231)
400 PRK02610 histidinol-phosphate 96.4 0.087 1.9E-06 58.3 15.9 100 602-713 155-258 (374)
401 PRK13236 nitrogenase reductase 96.4 0.029 6.3E-07 60.4 11.7 36 37-78 6-41 (296)
402 COG0079 HisC Histidinol-phosph 96.4 0.1 2.2E-06 57.9 16.1 213 400-717 23-240 (356)
403 KOG0053 Cystathionine beta-lya 96.3 0.035 7.7E-07 61.7 12.2 169 441-711 75-247 (409)
404 PRK06959 putative threonine-ph 96.3 0.038 8.2E-07 60.5 12.5 86 621-713 133-222 (339)
405 KOG2862 Alanine-glyoxylate ami 96.3 0.062 1.3E-06 57.5 13.2 96 601-713 131-228 (385)
406 TIGR00750 lao LAO/AO transport 96.3 0.26 5.6E-06 53.2 18.5 36 37-78 34-69 (300)
407 PRK04781 histidinol-phosphate 96.3 0.05 1.1E-06 60.1 13.1 88 620-713 153-244 (364)
408 COG0399 WecE Predicted pyridox 96.3 0.063 1.4E-06 59.6 13.7 55 419-481 15-69 (374)
409 PRK06434 cystathionine gamma-l 96.2 0.036 7.7E-07 62.0 11.8 80 618-710 147-230 (384)
410 PF00448 SRP54: SRP54-type pro 96.2 0.071 1.5E-06 54.1 12.9 91 220-315 83-178 (196)
411 PLN02450 1-aminocyclopropane-1 96.2 0.14 3.1E-06 58.7 16.9 89 619-711 191-295 (468)
412 PF07015 VirC1: VirC1 protein; 96.2 0.18 4E-06 52.3 15.7 37 37-78 1-37 (231)
413 PRK14722 flhF flagellar biosyn 96.2 0.14 3E-06 57.0 15.7 88 220-310 215-314 (374)
414 PRK13768 GTPase; Provisional 96.1 0.065 1.4E-06 56.5 12.3 37 36-78 1-37 (253)
415 PRK13235 nifH nitrogenase redu 96.1 0.17 3.7E-06 53.6 15.6 36 37-78 1-36 (274)
416 PF00142 Fer4_NifH: 4Fe-4S iro 96.1 0.077 1.7E-06 56.0 12.5 92 220-315 116-214 (273)
417 PLN02590 probable tyrosine dec 96.1 0.11 2.3E-06 60.8 14.9 97 602-706 272-371 (539)
418 PRK14723 flhF flagellar biosyn 96.1 0.13 2.8E-06 61.9 15.8 85 220-311 263-357 (767)
419 PF07755 DUF1611: Protein of u 96.0 0.022 4.8E-07 61.3 8.5 38 36-78 111-148 (301)
420 TIGR02617 tnaA_trp_ase tryptop 96.0 0.13 2.8E-06 58.3 14.4 57 601-662 169-225 (467)
421 PLN02368 alanine transaminase 95.9 0.42 9.1E-06 53.9 18.7 88 621-712 213-318 (407)
422 PRK14491 putative bifunctional 95.9 0.042 9.1E-07 64.9 10.8 45 30-80 3-47 (597)
423 COG3367 Uncharacterized conser 95.9 0.075 1.6E-06 57.2 11.5 37 37-78 148-184 (339)
424 PRK12724 flagellar biosynthesi 95.9 0.22 4.8E-06 56.2 15.7 36 38-78 224-259 (432)
425 PRK13580 serine hydroxymethylt 95.8 0.022 4.7E-07 65.4 7.8 72 634-712 232-307 (493)
426 KOG0257 Kynurenine aminotransf 95.8 0.22 4.7E-06 55.3 14.9 207 418-711 46-267 (420)
427 PLN02263 serine decarboxylase 95.8 0.35 7.7E-06 55.4 17.1 97 602-712 216-323 (470)
428 PRK13234 nifH nitrogenase redu 95.7 0.057 1.2E-06 58.1 10.2 37 36-78 3-39 (295)
429 PRK09435 membrane ATPase/prote 95.5 0.94 2E-05 49.8 18.5 35 38-78 57-91 (332)
430 COG1763 MobB Molybdopterin-gua 95.4 0.017 3.7E-07 56.7 4.2 41 36-82 1-41 (161)
431 PF03205 MobB: Molybdopterin g 95.1 0.024 5.2E-07 54.4 4.3 40 38-83 1-40 (140)
432 PF00282 Pyridoxal_deC: Pyrido 95.0 0.53 1.2E-05 52.5 15.0 82 619-706 194-278 (373)
433 PRK15399 lysine decarboxylase 94.9 0.19 4.1E-06 60.2 11.8 62 443-529 195-257 (713)
434 COG1419 FlhF Flagellar GTP-bin 94.8 0.41 9E-06 53.4 13.4 80 221-310 282-371 (407)
435 TIGR03801 asp_4_decarbox aspar 94.7 0.81 1.8E-05 53.3 16.1 78 621-706 243-327 (521)
436 TIGR03499 FlhF flagellar biosy 94.6 0.17 3.8E-06 54.1 9.7 37 36-78 193-231 (282)
437 PRK08637 hypothetical protein; 94.6 1.5 3.2E-05 48.8 17.4 87 621-711 149-255 (388)
438 PRK09275 aspartate aminotransf 94.6 0.63 1.4E-05 54.2 14.8 78 621-706 244-328 (527)
439 PRK04635 histidinol-phosphate 94.5 0.21 4.6E-06 54.8 10.4 83 622-712 151-237 (354)
440 COG1167 ARO8 Transcriptional r 94.5 1.6 3.4E-05 50.1 17.8 221 400-712 90-321 (459)
441 COG2403 Predicted GTPase [Gene 94.5 0.046 9.9E-07 59.7 4.9 40 34-78 123-162 (449)
442 KOG0780 Signal recognition par 94.4 0.89 1.9E-05 50.4 14.4 85 220-310 183-273 (483)
443 PRK13886 conjugal transfer pro 94.3 2 4.4E-05 45.0 16.6 38 36-78 1-38 (241)
444 COG0552 FtsY Signal recognitio 94.3 1.6 3.4E-05 47.8 15.8 84 220-311 221-318 (340)
445 PRK06995 flhF flagellar biosyn 94.3 0.83 1.8E-05 52.6 14.6 34 38-76 257-291 (484)
446 PRK06731 flhF flagellar biosyn 94.2 1.2 2.6E-05 47.6 14.8 37 36-78 74-110 (270)
447 PF10662 PduV-EutP: Ethanolami 94.1 0.94 2E-05 43.8 12.5 61 241-302 80-142 (143)
448 cd03114 ArgK-like The function 94.1 0.32 6.9E-06 47.0 9.4 33 40-78 2-34 (148)
449 cd01983 Fer4_NifH The Fer4_Nif 94.0 0.075 1.6E-06 45.6 4.4 33 40-78 2-34 (99)
450 KOG2749 mRNA cleavage and poly 93.9 0.16 3.4E-06 55.5 7.5 37 36-78 102-138 (415)
451 PRK13578 ornithine decarboxyla 93.9 0.39 8.4E-06 57.7 11.5 66 620-693 284-359 (720)
452 TIGR01366 serC_3 phosphoserine 93.9 0.43 9.4E-06 52.8 11.3 64 418-481 15-80 (361)
453 PRK15400 lysine decarboxylase 93.8 0.38 8.3E-06 57.7 11.2 145 444-673 196-343 (714)
454 PF03308 ArgK: ArgK protein; 93.7 0.37 8E-06 50.9 9.6 51 12-78 14-64 (266)
455 COG0076 GadB Glutamate decarbo 93.7 0.75 1.6E-05 52.8 12.9 92 602-706 196-292 (460)
456 PRK10463 hydrogenase nickel in 93.3 1.7 3.6E-05 46.9 14.0 33 39-78 106-138 (290)
457 TIGR00073 hypB hydrogenase acc 93.2 4.1 8.9E-05 41.3 16.2 35 37-78 22-56 (207)
458 COG0378 HypB Ni2+-binding GTPa 92.9 0.44 9.6E-06 48.2 8.4 46 39-95 15-61 (202)
459 PRK08760 replicative DNA helic 92.8 0.65 1.4E-05 53.5 10.8 37 38-78 229-265 (476)
460 PRK05595 replicative DNA helic 92.8 0.79 1.7E-05 52.3 11.4 37 38-78 201-237 (444)
461 PRK08506 replicative DNA helic 92.4 1.6 3.4E-05 50.4 13.1 36 38-78 192-227 (472)
462 TIGR00101 ureG urease accessor 92.4 3.5 7.6E-05 41.8 14.3 23 39-62 3-25 (199)
463 PF01695 IstB_IS21: IstB-like 92.2 0.16 3.5E-06 50.6 4.3 36 37-78 47-82 (178)
464 PRK03080 phosphoserine aminotr 92.1 0.64 1.4E-05 51.7 9.3 73 620-712 140-216 (378)
465 PRK05636 replicative DNA helic 91.9 1 2.3E-05 52.2 11.0 37 38-78 265-301 (505)
466 PRK10751 molybdopterin-guanine 91.7 0.24 5.1E-06 49.4 4.7 37 36-78 5-41 (173)
467 PLN02397 aspartate transaminas 91.6 0.66 1.4E-05 52.5 8.9 79 620-702 196-282 (423)
468 TIGR00665 DnaB replicative DNA 91.6 1.2 2.6E-05 50.5 11.0 37 38-78 195-231 (434)
469 PLN02271 serine hydroxymethylt 91.6 3.4 7.3E-05 48.4 14.5 59 643-706 315-376 (586)
470 COG1618 Predicted nucleotide k 91.5 0.25 5.5E-06 48.5 4.5 37 36-78 4-40 (179)
471 COG0626 MetC Cystathionine bet 91.5 2 4.3E-05 48.3 12.2 170 441-711 61-234 (396)
472 COG1066 Sms Predicted ATP-depe 91.5 1.7 3.6E-05 48.8 11.3 58 192-264 155-225 (456)
473 TIGR03600 phage_DnaB phage rep 90.9 2.8 6E-05 47.4 13.0 37 38-78 194-230 (421)
474 PRK14489 putative bifunctional 90.7 0.32 6.9E-06 54.1 5.1 38 36-79 204-241 (366)
475 PF03796 DnaB_C: DnaB-like hel 90.7 0.8 1.7E-05 48.1 7.8 36 39-78 20-55 (259)
476 COG1003 GcvP Glycine cleavage 90.6 3.5 7.5E-05 46.4 12.7 177 443-711 109-293 (496)
477 PRK09440 avtA valine--pyruvate 90.5 0.79 1.7E-05 51.4 8.1 86 621-712 182-271 (416)
478 PRK09165 replicative DNA helic 90.3 2.2 4.8E-05 49.5 11.7 57 191-258 323-391 (497)
479 KOG0256 1-aminocyclopropane-1- 90.1 4.3 9.2E-05 45.4 12.8 84 617-705 224-319 (471)
480 PHA02542 41 41 helicase; Provi 90.0 3.4 7.4E-05 47.6 12.7 36 38-78 190-225 (473)
481 TIGR01364 serC_1 phosphoserine 90.0 1.9 4.2E-05 47.5 10.4 74 617-713 131-207 (349)
482 PF13207 AAA_17: AAA domain; P 89.9 0.47 1E-05 43.2 4.6 23 39-62 1-23 (121)
483 PRK08006 replicative DNA helic 89.8 2.6 5.6E-05 48.6 11.5 37 38-78 224-260 (471)
484 cd00984 DnaB_C DnaB helicase C 89.8 5 0.00011 41.3 12.8 35 40-78 15-49 (242)
485 PRK06893 DNA replication initi 89.6 0.43 9.2E-06 49.4 4.6 36 38-79 40-75 (229)
486 PRK06526 transposase; Provisio 89.4 0.3 6.5E-06 51.6 3.3 36 37-78 98-133 (254)
487 PRK08727 hypothetical protein; 89.4 0.46 1E-05 49.3 4.7 35 38-78 42-76 (233)
488 PRK14721 flhF flagellar biosyn 89.4 11 0.00024 42.9 15.9 85 220-312 269-361 (420)
489 TIGR03453 partition_RepA plasm 89.3 0.87 1.9E-05 50.9 7.1 67 7-78 70-140 (387)
490 cd02042 ParA ParA and ParB of 89.3 0.54 1.2E-05 41.8 4.5 34 40-78 2-35 (104)
491 PRK06835 DNA replication prote 89.1 0.44 9.6E-06 52.3 4.5 35 38-78 184-218 (329)
492 PRK08939 primosomal protein Dn 89.1 0.48 1.1E-05 51.4 4.7 36 37-78 156-191 (306)
493 PRK12377 putative replication 88.8 0.54 1.2E-05 49.6 4.7 35 38-78 102-136 (248)
494 PRK05748 replicative DNA helic 88.8 2.8 6.1E-05 47.9 10.9 37 38-78 203-239 (448)
495 PF02492 cobW: CobW/HypB/UreG, 88.8 1.6 3.5E-05 43.2 7.9 34 38-78 1-34 (178)
496 PRK10037 cell division protein 88.7 0.59 1.3E-05 48.9 4.9 37 37-78 1-37 (250)
497 PRK06904 replicative DNA helic 88.6 4 8.6E-05 47.1 11.9 37 38-78 221-257 (472)
498 PF13614 AAA_31: AAA domain; P 88.4 0.55 1.2E-05 44.8 4.2 36 38-78 1-36 (157)
499 PRK13705 plasmid-partitioning 88.3 1.2 2.5E-05 50.1 7.2 62 8-78 81-142 (388)
500 PF01583 APS_kinase: Adenylyls 88.3 0.62 1.3E-05 45.6 4.5 34 39-78 4-37 (156)
No 1
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=100.00 E-value=2.6e-112 Score=1000.94 Aligned_cols=662 Identities=61% Similarity=0.989 Sum_probs=544.2
Q ss_pred cCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccc
Q 005009 24 STFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLR 103 (719)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~ 103 (719)
+.-+..+..++.+.+.+||||||||||||+||++|++++. ++|.+|.|+||||||+++++|+.++.+.+..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~ 88 (817)
T PLN02974 14 SSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR 88 (817)
T ss_pred cCCCcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc
Confidence 4446788899999999999999999999999999999994 78999999999999999899999998876443222
Q ss_pred cCCCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHH
Q 005009 104 RNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLA 183 (719)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a 183 (719)
-.++..+|.++..+..++ ..+..-..+... +.-+|+..+ ++....++.|.++|.|++|+|||+|
T Consensus 89 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~g~~------~~~~~~~~~~~~~~~~~~p~SPhlA 152 (817)
T PLN02974 89 ---SESLFASNRTLFLSPPAA-KSALGGVSSMGA------HAAVNAGAE------AGVTSSALWCHTLFAWRRAVSPHLA 152 (817)
T ss_pred ---cccccccccccccccccc-cccccccccccc------ccccccccc------cccccccccccCceecCCCCCHHHH
Confidence 356788899988887666 222222222221 111111111 1111234677899999999999999
Q ss_pred HhHhcCCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh
Q 005009 184 AERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG 263 (719)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~ 263 (719)
++++ |..+++++|.+.+.++++.. ++.+.++.+|++|||||||+++|++++.+++||++.+++|||||++.+||+
T Consensus 153 A~~e-g~~i~~~~i~~~~~~~l~~~----~~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~ 227 (817)
T PLN02974 153 ARRE-GRGVSDDEVLEAVNRSLREV----GANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGG 227 (817)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHhh----hcccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCH
Confidence 9999 99999999999998865431 011112458999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCCCcchhhhhhhhchhhhhhHHHHHHHHH
Q 005009 264 ISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAY 343 (719)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlglP~~~~~~~~~~~~~l~~~~~~v~~Ll~~l~~~~ 343 (719)
||||++++|+|+.||++|.|||+|+...+|.++|++++++++||+.+|+.|+...+++.+|++.....|..+++.+..++
T Consensus 228 INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (817)
T PLN02974 228 ISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWH 307 (817)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999889999999999988878899999988888999999999999
Q ss_pred HHHHHhhcccchhhCCCccccCCCCCCCCCCCeEEEEeecCC--ceEEEeCCCCcccceeeeccccccccCCC-CCCCHH
Q 005009 344 SERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGE--NFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIE 420 (719)
Q Consensus 344 ~~r~~rl~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~--g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~ 420 (719)
.+|.++++.|.+++++++||||+|++.++.+.|.+|++++|. -.|++|.+|++..++|||+++|||++++| |+ ||+
T Consensus 308 ~~r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~-~p~ 386 (817)
T PLN02974 308 SGRLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTL-QPE 386 (817)
T ss_pred HHHhHHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCC-CHH
Confidence 999999999999999999999999998766678999998885 13789999943445899999999999999 68 999
Q ss_pred HHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCc
Q 005009 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (719)
Q Consensus 421 V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~ 500 (719)
|++|+++|++++.|+++..+.|+++.+|||+|++..|.++++||||++|||||||+|||||+|+|+.++|......+...
T Consensus 387 I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~ 466 (817)
T PLN02974 387 LARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKR 466 (817)
T ss_pred HHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99999999999999987778999999999999996654557899999999999999999997668766553000000000
Q ss_pred cccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccc
Q 005009 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (719)
Q Consensus 501 ~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (719)
....+|.+||+++++|||.|+|+|++++.+.|+..++.+|+.+.+.++++|...++++.+++++|+.+++.... .+..|
T Consensus 467 ~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~ 545 (817)
T PLN02974 467 GGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTW 545 (817)
T ss_pred cccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-ccccc
Confidence 00025889999999999999999999998777765446788777888888877767778888888765431000 00113
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEe
Q 005009 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (719)
Q Consensus 581 ~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~D 660 (719)
.+.+++|+..++.+++...|.+++++.|++....+++++|||||+|||+||+||+++||++|+++||++|++||++||+|
T Consensus 546 ~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~D 625 (817)
T PLN02974 546 ESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFD 625 (817)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33334454345556777888899999987532223568899999999669999999999999999999999999999999
Q ss_pred ccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 661 EVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||||||||||+||+++++||+|||+|+||+|||||+|+||++++++|++.|.+
T Consensus 626 EV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~ 678 (817)
T PLN02974 626 EVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRG 678 (817)
T ss_pred ecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999964
No 2
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=8.6e-71 Score=602.77 Aligned_cols=302 Identities=30% Similarity=0.437 Sum_probs=264.3
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
.+.+++||||++++...+. |.+|++++|. |+||.||| +|||.+|||||+++||+ ||+|.+|+++|++++.|+
T Consensus 8 ~d~~~~whP~t~~~~~~~~-~~~i~~aeG~--yl~d~~G~----r~lDg~sg~W~~~~Gh~-~~~i~~Ai~~Q~~~l~~~ 79 (449)
T COG0161 8 ADLSHLWHPFTQMRDPLAE-PRVIVRAEGV--YLTDIDGR----RYLDGMSGLWCVNHGHG-RPEIAEAIKKQLDKLPHV 79 (449)
T ss_pred hhhhheecccccccccccc-ceeeeeccee--EEEeCCCC----EEEecccHHHHhhcCcC-CHHHHHHHHHHHHhCCch
Confidence 3888999999999886545 8899887775 89999999 99999999999999999 999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
++..++++++++||++|++++|++.+++|||++|||||||.||||| ++|+..+|. ++|++||+++++
T Consensus 80 ~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~------------p~r~~~Isr~~g 146 (449)
T COG0161 80 MFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQ------------PQRKKFISRRNG 146 (449)
T ss_pred hhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CcceEEEEeccC
Confidence 8888899999999999999999555899999999999999999999 788887776 779999999999
Q ss_pred cccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchh
Q 005009 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (719)
Q Consensus 516 yHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (719)
|||.|.+++|++|....+.. + ++++ .++..+++.|+.|+.+. ++ ...++
T Consensus 147 YHG~T~ga~Sv~g~~~~~~~----~-------~~~l----l~~~~~~~~P~~y~~~~--------~~--------~~~~~ 195 (449)
T COG0161 147 YHGDTLGAMSVGGPVALRHA----F-------YDPL----LPEVLHLPAPYAYRRGF--------FG--------EGDEE 195 (449)
T ss_pred cCcccchheeccCchhhhhh----h-------cccc----ccCceecCCCcccccCC--------CC--------CChHH
Confidence 99999999999995544321 1 2211 23557888888875321 11 11223
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc
Q 005009 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 596 ~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
. ..+++.||+.|.+ .++++|||||+|||+||+||+++||++||+++|++|++||||||+|||+|||||||++|++
T Consensus 196 ~-~~~a~~le~~i~~----~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~ 270 (449)
T COG0161 196 F-AEAADELEALILE----HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC 270 (449)
T ss_pred H-HHHHHHHHHHHHh----cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh
Confidence 3 4678899999986 5679999999999977779999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
+++||+|||+|+||||||||+||||++++++|++.|..+
T Consensus 271 e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~ 309 (449)
T COG0161 271 EHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDG 309 (449)
T ss_pred hhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcc
Confidence 999999999999999999999999999999999999887
No 3
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-65 Score=548.08 Aligned_cols=253 Identities=30% Similarity=0.394 Sum_probs=224.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++| +|+||.+|+ +||||.+|+++++|||| ||+|++|+++|++++.|.+ +.+.+++..+|+++|++
T Consensus 24 ~~~~~~~G~G--~~v~D~~G~----~YlDf~~Giav~~lGH~-hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~ 95 (404)
T COG4992 24 LPVVIVRGEG--AYVWDQQGR----EYLDFAAGIAVNNLGHC-HPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVE 95 (404)
T ss_pred CceeEEeccc--cEEECCCCC----EeeeeccceeeeccCCC-CHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHh
Confidence 3567777665 489999999 99999999999999999 9999999999999999987 46889999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+| ++++|||||||+||||+|||+| |+|++. ++|.+||+|+++|||+|++++|+|+.+.|++
T Consensus 96 ~s~--~~d~vff~NSGaEA~EaAiKlA-Rk~~~~---------------~~k~~Iia~~nsFHGRT~galS~t~~~ky~~ 157 (404)
T COG4992 96 LSP--FADRVFFCNSGAEANEAALKLA-RKYTGD---------------PEKSKIIAFENSFHGRTLGALSATGQPKYRK 157 (404)
T ss_pred hCc--cccEEEEcCCcHHHHHHHHHHH-HHHcCC---------------CCCcEEEEEcCCcCCccceeeeccCChhhcc
Confidence 997 3799999999999999999999 788761 5678999999999999999999999887776
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
+ +.|. .+++.+ ++|||. +++++++.
T Consensus 158 ~--------F~Pl--------~~g~~~----------------vpfnDi------------------~al~~ai~----- 182 (404)
T COG4992 158 G--------FGPL--------LPGFRH----------------VPFNDI------------------EALEAAID----- 182 (404)
T ss_pred C--------CCCC--------CCCcee----------------cCCCCH------------------HHHHHHhc-----
Confidence 4 1111 112222 348884 67888875
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++||||+||| ||+||+++||++||+++|+||++||+|||+||||||+||||+||++||+||+|||+|+||+||||
T Consensus 183 ---~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG 258 (404)
T COG4992 183 ---EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG 258 (404)
T ss_pred ---cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+||+++++++++.|..
T Consensus 259 -~PigA~la~~~~~~~~~~ 276 (404)
T COG4992 259 -FPIGAMLATEEIASAFTP 276 (404)
T ss_pred -ccceeeEEchhhhhcCCC
Confidence 899999999887887754
No 4
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-64 Score=551.88 Aligned_cols=277 Identities=26% Similarity=0.367 Sum_probs=240.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||+||| +||||.+|+++.++||| ||+|++|+++|++++.|.++....+++..++||+|.+
T Consensus 38 ~p~~~~ra~G~--~l~DvdG~----~ylDf~sgi~v~~~GH~-hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~ 110 (447)
T COG0160 38 FPLVIVRAEGA--YLYDVDGN----EYLDFLSGIAVLNLGHN-HPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTA 110 (447)
T ss_pred CcceEEecccC--EEEeCCCC----EEEEcccCcchhccCCC-CHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence 47788888776 89999999 99999999999999999 9999999999999999877555556999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|....++++|+||||||||+|||+| |.||++ ..||+|.++|||+|.+++|+|+....+.
T Consensus 111 ~~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~Tgr------------------~~viaf~~afHG~T~galslT~~~~~~~ 171 (447)
T COG0160 111 LAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR------------------PGVIAFDGAFHGRTLGALSLTGSKPPYK 171 (447)
T ss_pred hCCcccCCeEEecCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCcccccchhhHHhccCccccc
Confidence 998744789999999999999999999 899876 4799999999999999999998654332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
.+++++ .++++++|+|++|+|+.. . +.+++...+.+++++.+....
T Consensus 172 -------~~~~~~--------~~~v~~~Pyp~~yr~p~~--------~---------~~~~~~~~~~~~~e~~i~~~~-- 217 (447)
T COG0160 172 -------AGFGPL--------PPGVYHVPYPNPYRCPFG--------I---------GGEECGDDALEYIERALFDLE-- 217 (447)
T ss_pred -------cCCCCC--------CCCeEEecCCccccCccc--------C---------chhhhhHHHHHHHHHHHHhhc--
Confidence 122221 235789999999987521 1 113556667788888776532
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++||||+||| ||+||+++||++||++|+++|+||||+||+|||||||||||+||++||+||+|||||+||+||||
T Consensus 218 ~~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G 296 (447)
T COG0160 218 VGPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG 296 (447)
T ss_pred CCCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC
Confidence 56789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|||+|++++++++++.+
T Consensus 297 -~Pl~avv~r~ei~~~~~g 314 (447)
T COG0160 297 -LPLSAVVGRAEIMDWPPG 314 (447)
T ss_pred -CceeEEeccHHhcccCCc
Confidence 899999999999995443
No 5
>PRK07482 hypothetical protein; Provisional
Probab=100.00 E-value=7.6e-62 Score=547.85 Aligned_cols=304 Identities=19% Similarity=0.239 Sum_probs=250.8
Q ss_pred ccchhhCCCccccCCCCCCCCC--CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~--~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
.+.+++.+++|+|++++..+.. ..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~ 79 (461)
T PRK07482 7 ELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGI--RITDAQGR----RYIDAFAGLYCVNVGYG-RTEVAEAIAEQA 79 (461)
T ss_pred HHHHhhhhhccCCcccccccccccCCCeeEEeeeee--EEEECCCC----EEEEcccchhhhcCCCC-CHHHHHHHHHHH
Confidence 4445566789999987755432 247888887775 89999999 99999999999999999 999999999999
Q ss_pred hhccccc-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 430 ARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
+++.+.+ +..+.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~~ 145 (461)
T PRK07482 80 KELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR------------PEKKK 145 (461)
T ss_pred HhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCce
Confidence 9987543 23567999999999999998754 689999999999999999999 788755443 56889
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+|+++|||+|.+++++++...++.. + .++. ++..+++.|++++++. .+
T Consensus 146 Ii~~~~~YHG~t~ga~s~~~~~~~~~~--------~----~~~~----~~~~~~~~p~~~~~~~-------~~------- 195 (461)
T PRK07482 146 IISRWRGYHGSGVVTGSLTGLSLFHQH--------F----DLPI----ARVLHTEAPHYYRRAD-------AG------- 195 (461)
T ss_pred EEEecCccCCccHhhhhccCCchhhhc--------c----CCCC----CCCEEcCCCccccccc-------cC-------
Confidence 999999999999999999986544432 1 1111 2345667776654321 00
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
...+.+...+++.+++.+++ .++++|||||+||| ||+||+++||++||++||++|++||+|||+|||||||||
T Consensus 196 --~~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGR 268 (461)
T PRK07482 196 --MSEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR 268 (461)
T ss_pred --CCHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Confidence 01123445567888888863 34678999999998 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||+||+++++||+|||+|+||+|||||+|+||+++++++++.|..
T Consensus 269 tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~ 313 (461)
T PRK07482 269 LGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQ 313 (461)
T ss_pred CcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhc
Confidence 999999999999999999999999998899999999999998853
No 6
>PRK07481 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-61 Score=545.01 Aligned_cols=302 Identities=24% Similarity=0.358 Sum_probs=252.7
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+.+.+++||||+++..+....|.++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVRGDGV--YVYDIDGK----KLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEecccc--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhccc
Confidence 3567889999999987654568888887775 89999999 99999999999999999 99999999999999877
Q ss_pred ccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 435 ~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
.+. ..+.+++..+||++|++.+|.+.+++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ------------PERTKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 642 24689999999999999885333789999999999999999999 788765543 5678999999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
++|||+|.+++++++...++.. +.+ ..+++.+++.|+.+++ +||. .|.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~--------~~~--------~~~g~~~~~~~~~~~~--------~~~~--------~d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRN--------YEP--------LLPGCFHVETPWLYRN--------PFTE--------QDP 191 (449)
T ss_pred CCcCCcchhhhccCCCcccccc--------cCC--------CCCCCEEeCCCccccc--------ccCC--------CCH
Confidence 9999999999999986544331 111 1134556677766543 2441 112
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
+.+...+.+.+|+.|.. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 34445566778888863 35679999999998 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~ 306 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEA 306 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhc
Confidence 9999999999999999999999999999999999998854
No 7
>PRK05965 hypothetical protein; Provisional
Probab=100.00 E-value=2e-61 Score=544.22 Aligned_cols=301 Identities=20% Similarity=0.255 Sum_probs=247.7
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+++.++.|+|++++.......|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~ 79 (459)
T PRK05965 7 IELDRAHLIHPVASYRGHEARGVTVLASAKGA--TLTDASGH----QLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELP 79 (459)
T ss_pred HHhhhhccccccccccccccCCCceEEeeeEe--EEEECCCC----EEEECcccHHhccCCCC-CHHHHHHHHHHHHhcC
Confidence 34456678999876532211347788887775 89999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 434 ~~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
+.+. ..+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~kii~~ 145 (459)
T PRK05965 80 YATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR------------PSKKQFISL 145 (459)
T ss_pred CcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC------------CCccEEEEe
Confidence 7553 2467999999999999998754 789999999999999999999 888765543 568899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++|+...++.. +++.. ++..+++.|++|+++ ++ .+
T Consensus 146 ~~~YHG~t~~a~s~t~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~--------~~---------~~ 192 (459)
T PRK05965 146 ERGYHGSSSVGAGLTALPAFHRG--------FDLPL--------PWQHKIPSPYPYRNP--------VG---------DD 192 (459)
T ss_pred cCCcCcccHHHHHhcCCchhhcc--------cCCCC--------CCCEEcCCCcccccc--------cC---------CC
Confidence 99999999999999986544432 11111 123456666555432 11 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+++...|++.+++.|++ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+|
T Consensus 193 ~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 193 PQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 234556677888888874 34579999999997 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~ 308 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIAD 308 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhc
Confidence 99999999999999999999998899999999999998853
No 8
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=6.6e-60 Score=530.84 Aligned_cols=302 Identities=26% Similarity=0.408 Sum_probs=247.8
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.++...++|+|++++..+....|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~ 86 (453)
T PRK06943 14 WVARSLRAVWHPCTQMKHHERLPLLPVARGEGA--WLYDRDGR----RYLDAISSWWVNLFGHA-NPRINAALKDQLDTL 86 (453)
T ss_pred HHHHhhcccccCCcCccccccCCCceEEecccC--EEEeCCCC----EEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhc
Confidence 344556778999887644322357888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.....+.+++..+||++|++.+|.. +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|
T Consensus 87 ~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~------------~~r~~Ii~~ 152 (453)
T PRK06943 87 EHAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR------------GDKREFVCL 152 (453)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC------------CCCCEEEEE
Confidence 877655678999999999999988754 579999999999999999999 666544443 567899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. +.+.+ ++..+++.|+.+++. +. ..
T Consensus 153 ~~~yHG~t~gals~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~~~~--------~~---------~~ 199 (453)
T PRK06943 153 ANGYHGETIGALGVTDVALFKDA--------YDPLI--------RHAHVVASPDARGAR--------PG---------ET 199 (453)
T ss_pred CCCcCCCcHHhhcccCChhhhcc--------cccCC--------CCCEEECCCCccccc--------cC---------CC
Confidence 99999999999999986655542 11111 123456666544321 01 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.+...+++.+++.|++ ++++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||+|
T Consensus 200 ~~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~ 274 (453)
T PRK06943 200 AADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274 (453)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcch
Confidence 123444566788888873 468999999999439999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++||+|||+|+||+|||||+|+|++++++++++.|..
T Consensus 275 fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~ 315 (453)
T PRK06943 275 FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYD 315 (453)
T ss_pred hHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcc
Confidence 99999999999999999999999999999999999998853
No 9
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.1e-59 Score=530.89 Aligned_cols=302 Identities=29% Similarity=0.458 Sum_probs=247.5
Q ss_pred cchhhCCCccccCCCCCCCCCC-CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 353 MPKRAGELFWWPFTQHKLVPEE-AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~-~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
+.+.+.+++|+|++++...... +|.++++++| +||||.||| +|||+++|+|++++||+ ||+|++|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIARGEG--AWLVGHDGR----RYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEeccc--CEEEeCCCC----EEEEcCccHHhccCCCC-CHHHHHHHHHHHHh
Confidence 3445567789999886542211 3466777666 489999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCC----CCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcce
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~----~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~ 507 (719)
+.+.....+.+++..+|+++|++.+|. +.+++|+|+||||||||+|||+| |+|+..+|. ++|.
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~------------~~r~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE------------HRRT 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCCc
Confidence 887654467899999999999998864 23689999999999999999999 778765543 5688
Q ss_pred EEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchh
Q 005009 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (719)
Q Consensus 508 kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~ 587 (719)
+||+|+++|||+|.+++++++...++.. +.++ .++..++|.|+.+++.. ..
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~--------~~p~--------~~~~~~~~~p~~~~~~~--------~~----- 213 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRV--------YAPL--------LLESLFAPSPDAYLAEP--------GQ----- 213 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCcccccc--------cCCC--------CCCCEEeCCCCcccccc--------CC-----
Confidence 9999999999999999999986554432 1111 12345677777665421 11
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcc
Q 005009 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (719)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfG 667 (719)
..++....+.+.+++.+++ .+++|||||+||++||+||+++||++||++||++|++||++||+||||||||
T Consensus 214 ----~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 214 ----SAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred ----CHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 1123334466788888863 4679999999994499999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 668 RtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|||+||+++++|++|||+|+||+|||||+|+||+++++++++.|.
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~ 329 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFL 329 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhh
Confidence 999999999999999999999999999889999999999999885
No 10
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-60 Score=499.57 Aligned_cols=276 Identities=25% Similarity=0.328 Sum_probs=242.2
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.+|++++|. ||||.+|+ +|||+.+|++++++||| ||+|++|+.+|+.++.|.+ ..+.+++..+||++|+
T Consensus 31 ~~Pl~Iv~~~~~--ylyDe~G~----ryLD~f~Gi~tvslGHc-hP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~ 102 (442)
T KOG1404|consen 31 KKPLVIVRGEGQ--YLYDEEGR----RYLDAFGGIVTVSLGHC-HPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALV 102 (442)
T ss_pred cCCceEEecceE--EEEcCCCc----eeehhhCCeEEEEcCCC-ChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHH
Confidence 468899887775 89999999 99999999999999999 9999999999999888865 5788999999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.+|.+ +.++||+||||||||.||||| |.|+++ .+||+++++|||.|..++++|+.+.++
T Consensus 103 s~~P~~-l~~vfF~nsGsEANelal~ma-r~Yt~~------------------~diIa~r~~YHG~t~~t~glt~~~~~k 162 (442)
T KOG1404|consen 103 SKLPGD-LKVVFFVNSGSEANELALKMA-RLYTGN------------------LDIIARRNSYHGNTLYTLGLTGLSPWK 162 (442)
T ss_pred HhCCCC-ceEEEEecCCchHHHHHHHHH-HHhcCC------------------ceEEEeeccccCCchhhcccccCCccc
Confidence 999876 789999999999999999999 899865 499999999999999999999876555
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. + |. ...+.++..-|++||.. |.+. ..++..++|.+.+++.+..
T Consensus 163 ~~------------~--~~--~~~~~~~~~~Pdp~r~~--------~~~~--------~~~e~~d~~a~~l~d~i~~--- 207 (442)
T KOG1404|consen 163 QN------------F--PG--VASGVHHTMNPDPYRGI--------FGGS--------NEEEASDRYAKELEDLILY--- 207 (442)
T ss_pred cc------------C--CC--CCCcccccCCCCccccc--------CCCC--------chhhhHHHHHHHHHHHHHh---
Confidence 42 0 11 11356778889888763 3321 1345667777888887764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++.|||+|+||| ||.||++.+|++||++++++|+|+|+++|+|||||||||||.||+||++|+.|||+|++|+|||
T Consensus 208 -~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn 285 (442)
T KOG1404|consen 208 -DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN 285 (442)
T ss_pred -cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC
Confidence 56788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcCCC
Q 005009 694 GVIPLAATLATNAVFDSFVGDS 715 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~~~ 715 (719)
| +|||||++++||++.|...+
T Consensus 286 G-~Pl~AVvtt~EIa~v~~~~~ 306 (442)
T KOG1404|consen 286 G-FPLGAVVTTPEIADVLNQKS 306 (442)
T ss_pred C-CcceeeecCHHHHHHHHhcc
Confidence 9 89999999999999997654
No 11
>PRK07678 aminotransferase; Validated
Probab=100.00 E-value=1.4e-59 Score=528.34 Aligned_cols=298 Identities=23% Similarity=0.322 Sum_probs=245.1
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
++.+++.+++|+|+++.. ...|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYN---PNATMVVAKAEGA--WVTDIQGN----RYLDGMSGLWCVNVGYG-RKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCccccc---cCCCeeEEeeeee--EEEeCCCC----EEEEccccHHhhcCCCC-CHHHHHHHHHHHHh
Confidence 344455667888875322 1247888887765 89999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
+.+... .+.+++..+|+++|++.+|. .++|+|+||||||||+|||+| |.|++++|. ++|.+||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~------------~~r~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE------------PHRYKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 877652 46789999999999999875 369999999999999999999 888866553 56889999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +.+ ..+++.+++.|+.++++ +..
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~~~--------~~~--------- 189 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK------------YEP----LAPGFLHVPPPDCYRMP--------GIE--------- 189 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc------------cCC----CCCCCEEeCCCcccccc--------ccC---------
Confidence 999999999999999986544331 111 11345667777666432 110
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
..+.+...+++.+++.|+. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 190 ~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 190 SEDIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 0122334456778888863 34679999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++||+|||+|+||+|||||+|+||+++++++++.|..
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~ 306 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKG 306 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhc
Confidence 999999999999999999999998999999999999998864
No 12
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=2.4e-59 Score=527.74 Aligned_cols=300 Identities=28% Similarity=0.447 Sum_probs=247.6
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+++..+.|+|+++...+....|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRRGEGV--WLEDFEGK----RYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEeeecc--EEEECCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456678999876543322235678887775 89999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 434 ~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
+.+...+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++|.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~------------t~r~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK------------PRKKRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEEC
Confidence 77655678999999999999988754 689999999999999999999 777644443 5678999999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
++|||+|.+++++++...++.. +++. .++..++|.|+++++.. + ...
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~--------~~p~--------~~~~~~~p~~~~~~~~~--------~---------~~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTET--------YKPL--------LLDTIKVPSPDCYLRPE--------G---------MSW 193 (466)
T ss_pred CCcCcccHHHHhccCCcccccc--------CCcc--------CCCCEEcCCCCcccccc--------C---------CCH
Confidence 9999999999999986544432 1111 12345677777664321 1 111
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
++....+++.+++.+++ .+++|||||+||++||+||++++|++||++||++|++||++||+|||||||||||+||
T Consensus 194 ~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 23445567788888873 4689999999993399999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++++||+|||+|+||+|||||+|+||+++++++++.|.
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~ 307 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFY 307 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHh
Confidence 999999999999999999999889999999999999885
No 13
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=100.00 E-value=3e-59 Score=530.71 Aligned_cols=299 Identities=21% Similarity=0.260 Sum_probs=245.9
Q ss_pred CCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC
Q 005009 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (719)
Q Consensus 358 ~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~ 437 (719)
+..+||||+++.......|.++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+...
T Consensus 54 ~~~~~~p~~~~~~~~~~~p~~i~~~~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-hp~v~~Av~~ql~~~~~~~~ 126 (504)
T PLN02760 54 GHDMLAPFTAGWQSTDLEPLVIEKSEGS--YVYDINGK----KYLDALAGLWCTALGGS-EPRLVAAATEQLNKLPFYHS 126 (504)
T ss_pred cCCcccCcccccccccCCCceEEeeeee--EEEECCCC----EEEEcCcCHHhcccCCC-CHHHHHHHHHHHhhccceec
Confidence 3448999999876544468888887775 89999999 99999999999999999 99999999999999876532
Q ss_pred -CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCc
Q 005009 438 -PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (719)
Q Consensus 438 -~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~sy 516 (719)
..+.+++..+||++|++.++...+++|+|+||||||||+|||+| |+|+...|. ++|.+||+|+++|
T Consensus 127 ~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~------------~~r~~iI~~~~~y 193 (504)
T PLN02760 127 FWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR------------PNKKKFIARSKSY 193 (504)
T ss_pred ccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCc
Confidence 24578999999999999854333689999999999999999999 788755443 5678999999999
Q ss_pred ccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhH
Q 005009 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 517 HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
||+|++++++++.+.++.. ++++. ++..+++.|+.|++.. ++. +.+++
T Consensus 194 HG~t~~a~slsg~~~~~~~------------~~~~~----~~~~~~~~p~~~~~~~------~~~----------~~~~~ 241 (504)
T PLN02760 194 HGSTLISASLSGLPALHQK------------FDLPA----PFVLHTDCPHYWRFHL------PGE----------TEEEF 241 (504)
T ss_pred cCChHhhhhccCChhhccC------------CCCCC----CCcEEeCCCcccccCC------CCC----------cHHHH
Confidence 9999999999986544321 11111 2345677776664310 011 11233
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
...+.+.+++.+.. .+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 242 ~~~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e 316 (504)
T PLN02760 242 STRLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCD 316 (504)
T ss_pred HHHHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHH
Confidence 44456778877753 34678999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 677 ~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++||+|||+||||+|||||+|+||+++++++++.|..
T Consensus 317 ~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~ 353 (504)
T PLN02760 317 KYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHS 353 (504)
T ss_pred hcCCCCcEEEecccccCCccccceEeecHHHHhhhhc
Confidence 9999999999999999999999999999999998863
No 14
>PRK07036 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-59 Score=527.10 Aligned_cols=301 Identities=21% Similarity=0.269 Sum_probs=248.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.+++|+||+++..+....|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 83 (466)
T PRK07036 11 LAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGI--YVTDADGR----RYLDGIGGMWCVNVGYG-REEMADAIADQARRL 83 (466)
T ss_pred HHHHhhcccccCccCccccccCCCceEEeCcee--EEEECCCC----EEEECcccHHhhcCCCC-CHHHHHHHHHHHHhC
Confidence 344566789999987755444468888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCC-CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 433 GHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 433 ~~~~~~~-~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
.+.+... +.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------t~r~~Ii~ 149 (466)
T PRK07036 84 PYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR------------PAKKHIIT 149 (466)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 7765333 67999999999999998754 689999999999999999999 788765543 56789999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +. +. .++..+++.|++|+++. +.
T Consensus 150 ~~~~YHG~t~~a~s~~~~~~~~~~-----~~-------~~----~~~~~~~~~p~~~~~~~--------~~--------- 196 (466)
T PRK07036 150 RGDAYHGSTYLTASLTGKAADRTE-----FD-------YA----SDLVHHLSSPNPYRRPA--------GM--------- 196 (466)
T ss_pred EcCccCCccHhhhcccCCCccccc-----cc-------CC----CCCcEEecCCccccccc--------CC---------
Confidence 999999999999999986544431 11 11 12345667776664321 10
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
..+.....+.+.+++.+.. .++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+
T Consensus 197 ~~~~~~~~~~~~~~~~i~~----~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 271 (466)
T PRK07036 197 SEAAFCDFLVDEFEDKILS----LGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH 271 (466)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch
Confidence 0122334455667777753 35689999999998 999999999999999999999999999999999999999999
Q ss_pred ccccc-ccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 672 ETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 672 ~~a~e-~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|+++ ++|++|||+|+||+|||||+|+||+++++++++.|.
T Consensus 272 ~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~ 313 (466)
T PRK07036 272 FFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVIS 313 (466)
T ss_pred hhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHh
Confidence 99998 799999999999999999999999999999999885
No 15
>PRK07480 putative aminotransferase; Validated
Probab=100.00 E-value=3.5e-59 Score=525.36 Aligned_cols=300 Identities=21% Similarity=0.296 Sum_probs=245.2
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+.+..+.|+|+++++.+....|.++++++| +|+||.||| +||||++|+|++++||+ ||+|++|+++|++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~ 83 (456)
T PRK07480 11 QALDAAHHLHPFSDMKALNEKGSRVITRAEG--VYLWDSEGN----KILDGMAGLWCVNVGYG-RKELADAAARQMRELP 83 (456)
T ss_pred HhhhhcccccCcccccccccCCCceEEecee--eEEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 3345567899987765432235778888666 589999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 434 ~~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
+... ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|
T Consensus 84 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~ 149 (456)
T PRK07480 84 YYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK------------PQKKVIISR 149 (456)
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 6542 2467999999999999998754 689999999999999999999 788755543 567899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. .++ + .++..+++.|++|++.. + .+
T Consensus 150 ~~~yHG~tl~a~s~~g~~~~~~~--------~~~----~----~~~~~~~~~p~~~~~~~--------~---------~~ 196 (456)
T PRK07480 150 KNGYHGSTVAGASLGGMKYMHEQ--------GDL----P----IPGIVHIDQPYWFGEGG--------D---------MT 196 (456)
T ss_pred CCCcCCcchhhhhccCChhhhcc--------cCC----C----CCCCeecCCCccccccc--------C---------CC
Confidence 99999999999999975433321 111 1 12345677777665421 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+++...+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+|
T Consensus 197 ~~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 197 PEEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 123334455777766653 35679999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++++|++|||+|+||+|||||+|+||+++++++++.|.
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~ 311 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLI 311 (456)
T ss_pred hhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHh
Confidence 9999999999999999999999999999999999999884
No 16
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.7e-59 Score=525.88 Aligned_cols=301 Identities=28% Similarity=0.426 Sum_probs=249.1
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.+++|+|++++..+....|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l 88 (460)
T PRK06916 16 LSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGR--KLYDVNGN----EYYDGVSSIWLNVHGHQ-VPELDEAIREQLNKI 88 (460)
T ss_pred HHHHHhhccccccccccccccCCCeeEEecccc--EEEeCCCC----EEEEcchhHHHhhcCCC-CHHHHHHHHHHHHhC
Confidence 344456778999876543322457888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.....+.+++..+|+++|++.+|.+ +++++|+||||||||+|||+| |.|+..+|. ++|.+||+|
T Consensus 89 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~------------tgr~~ii~~ 154 (460)
T PRK06916 89 AHSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK------------PKKQRFVTL 154 (460)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 876544578999999999999998754 689999999999999999999 777765543 568899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. +.++ .++..++|+|+.|+++ ++ .+
T Consensus 155 ~~~YHG~t~~als~s~~~~~~~~--------~~~~--------~~~~~~~p~p~~~~~~--------~~---------~~ 201 (460)
T PRK06916 155 KNAYHGDTIGAVSVGAIDLFHQV--------YSSL--------LFEAIKMPYPYTYRSP--------YG---------ND 201 (460)
T ss_pred CCcCCcccHHhHhccCCcccccc--------cCCC--------CCCCEEeCCCcccccc--------cC---------CC
Confidence 99999999999999986554432 1111 1234567777666431 11 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.+...+.+.+++.|+ .++++|||||+||++||+||+++||++||++|+++|++||++||+|||||||||||++
T Consensus 202 ~~~~~~~~~~~l~~~l~-----~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~ 276 (460)
T PRK06916 202 KAEIVKKHLEELEELLK-----EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276 (460)
T ss_pred hHHHHHHHHHHHHHHHH-----hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchh
Confidence 12344456678888887 3468999999999339999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++++||+|||+|+||+|||||+|+||+++++++++.|.
T Consensus 277 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~ 316 (460)
T PRK06916 277 FACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFY 316 (460)
T ss_pred hHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhh
Confidence 9999999999999999999999889999999999999875
No 17
>PRK06105 aminotransferase; Provisional
Probab=100.00 E-value=1.5e-58 Score=520.96 Aligned_cols=303 Identities=21% Similarity=0.295 Sum_probs=248.4
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.++.|+|+.+...+....|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIERGEGI--YVYDDAGK----RYIEGMAGLWSVALGFS-EQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEeeeEE--EEEECCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHHhC
Confidence 445566778999876644322457888887665 89999999 99999999999999999 999999999999998
Q ss_pred cccc-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 433 ~~~~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
.+.+ +..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~------------t~r~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR------------PEKKKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 7653 22367999999999999998754 689999999999999999999 777655443 56889999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +++ + .++..+++.|+.+++. +. ..
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~~----~----~~~~~~~~~p~~~~~~----------~~------~~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FDL----P----LDRILHTGCPHYYRFG----------LP------GE 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cCC----C----CCCCEEcCCCcccccc----------cC------CC
Confidence 999999999999999975443321 111 1 1244567777665431 11 01
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
..+.+...+.+.+++++.. .++++|||||+||| ||+||++++|++||++||++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 1123445567788888863 34578999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||+++++|++|||+|+||+||||++|+|++++++++++.|..
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~ 311 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIAD 311 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhc
Confidence 999999999999999999999998999999999999998864
No 18
>PRK12403 putative aminotransferase; Provisional
Probab=100.00 E-value=2.4e-58 Score=519.38 Aligned_cols=299 Identities=18% Similarity=0.257 Sum_probs=244.2
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+++..+.|+|+++++.+....|.++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~A~~~q~~~~~~ 88 (460)
T PRK12403 16 AADAAHHIHAFLDQKALNAEGPRVMVRGEGL--HLWDNDGK----RYLDGMSGLWCTNLGYG-RKDLAAAAARQMEQLPY 88 (460)
T ss_pred HhhhcccccccccccccccCCCceEEeceee--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 3445668999887654322457888887775 89999999 99999999999999999 99999999999999887
Q ss_pred ccCC-CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 435 VMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 435 ~~~~-~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
.+.. ...+++..+|+++|++.+|.+ +++++|+||||||||+|||+| |.|+...|. ++|.+||++.
T Consensus 89 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~------------~~r~~ii~~~ 154 (460)
T PRK12403 89 YNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGK------------PQKKIMIGRW 154 (460)
T ss_pred eecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCCcEEEEEC
Confidence 6432 356899999999999998754 589999999999999999999 778644332 4577899999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
++|||+|.+++++++...++.. ++ ..++..+++.|++|+++ ++. ..
T Consensus 155 ~~yHG~t~~~~s~s~~~~~~~~---------~~--------~~~~~~~~~~p~~~~~~---------~~~--------~~ 200 (460)
T PRK12403 155 NGYHGSTLAATALGGMKFMHEM---------GG--------LIPDVAHIDEPYWYANG---------GEL--------TP 200 (460)
T ss_pred CCcCcccHhhhhcCCCcccccc---------CC--------CCCCCEEeCCCcccccc---------cCC--------Ch
Confidence 9999999999999986543321 11 11245677778776532 110 01
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
..+.+.+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|
T Consensus 201 ~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 201 AEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 23334455667766653 34578999999998 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~ 315 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVE 315 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhc
Confidence 9999999999999999999998899999999999998853
No 19
>PRK06541 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-58 Score=515.69 Aligned_cols=304 Identities=24% Similarity=0.331 Sum_probs=252.5
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
.+.+.+.+++||||++...+....|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGC--YIWDDRGK----RYLDGLAGLFVVQVGHG-RAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEeCccc--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhh
Confidence 3445667889999998765432357788887775 89999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
+.+.+...+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.|++..|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGK------------PGKHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 8876544678999999999999988754 689999999999999999999 777654332 46789999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +.+. .++..++|.|+.++++. |++
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~--------~~~~--------~~g~~~~~~~~~~~~~~-------~~~--------- 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAP--------FEPL--------VPGGFRVPNTNFYRAPE-------LGD--------- 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhccc--------cCCC--------CCCcEEeCCCccccccc-------cCC---------
Confidence 999999999999999986544331 1111 13456677776664320 211
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
+.+++...+++.+++.+++ .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1224455667888888874 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+..
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~ 314 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLD 314 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhc
Confidence 999999999999999999999998899999999999998753
No 20
>PRK06062 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-58 Score=515.93 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=240.9
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
..+.+..++|++++.+.. ..|.++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~---~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 85 (451)
T PRK06062 16 AYALDRAHVFHSWSAQGK---INPMVIAGAEGS--YVWDYEGR----RYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARL 85 (451)
T ss_pred HHHhhhhhcccccccccc---CCCceEEeceee--EEEECCCC----EEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhc
Confidence 334455668888875421 357788886665 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+... .+.+++..+|+|+|++++|.+ +++|+|+||||||||+|||+| |.|++| .+||+|
T Consensus 86 ~~~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~tgr------------------~~ii~~ 144 (451)
T PRK06062 86 CTVAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLHTGR------------------PKVLSA 144 (451)
T ss_pred CCcCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHhhCC------------------ceEEEE
Confidence 87654 578999999999999998754 689999999999999999999 788654 589999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. . | ..++..+++.|+.++++ |... .
T Consensus 145 ~~~yHG~t~~als~~~~~~~~~~---------~-----~---~~~~~~~~~~p~~~~~~--------~~~~--------~ 191 (451)
T PRK06062 145 YRSYHGGTGSAINLTGDPRRWPN---------D-----T---GRAGVVHFFGPFLYRSE--------FHAT--------T 191 (451)
T ss_pred eCCCCCCCHHHHhhcCCcccccC---------C-----C---CCCCCEEeCCCCccccc--------cCCC--------C
Confidence 99999999999999975432210 0 0 01244556666655431 2110 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
++++...+.+.+++.|+. .++++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+|
T Consensus 192 ~~~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~ 266 (451)
T PRK06062 192 EEEECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKW 266 (451)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHH
Confidence 123444567888888863 34578999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++||+|||+|+||+|||||+|+||+++++++++.|..
T Consensus 267 ~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~ 307 (451)
T PRK06062 267 FAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD 307 (451)
T ss_pred HHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc
Confidence 99999999999999999999999999999999999998853
No 21
>PRK07483 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-57 Score=511.38 Aligned_cols=281 Identities=21% Similarity=0.249 Sum_probs=231.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++
T Consensus 12 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 84 (443)
T PRK07483 12 TLPVAVAGEGI--YLIDATGK----RYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVA 84 (443)
T ss_pred CCceEEeceEE--EEEeCCCC----EEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 47788886665 89999999 99999999999999999 9999999999999987654334679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+ +++|+|+||||||||+|||+| |.|+.++|. ++|.+||+|+++|||+|.+++++++...++.
T Consensus 85 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~ 150 (443)
T PRK07483 85 AAPAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ------------PQRRHFIARRQSYHGNTLGALAIGGNAWRRE 150 (443)
T ss_pred hCCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCcCHHHhhhcCCccccc
Confidence 88754 689999999999999999999 777655443 5688999999999999999999998654332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +++.. ++..+++.|+.|++. .. .....++...+++.+++.+..
T Consensus 151 ~--------~~p~~--------~~~~~~~~~~~~~~~--------~~--------~~~~~~~~~~~~~~l~~~~~~---- 194 (443)
T PRK07483 151 P--------FAPLL--------IEAHHVSPCYAYREQ--------RA--------GESDEAYGQRLADELEAKILE---- 194 (443)
T ss_pred c--------cCCCC--------CCCEEeCCCcccccc--------cc--------CCCHHHHHHHHHHHHHHHHHh----
Confidence 1 11111 123455555444321 00 011123445567788877753
Q ss_pred CCCCcEEEEEEcccccc-CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 615 KVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg-~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| || +||+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+|||
T Consensus 195 ~~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~g 273 (443)
T PRK07483 195 LGPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGA 273 (443)
T ss_pred cCCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhcc
Confidence 35679999999998 99 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
||+|+|++++++++++.|..
T Consensus 274 G~~Pi~av~~~~~i~~~~~~ 293 (443)
T PRK07483 274 GYQPIGAVLASDRIYDAIAD 293 (443)
T ss_pred CccccEEEEEcHHHHHHHhc
Confidence 98899999999999998854
No 22
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-57 Score=482.68 Aligned_cols=265 Identities=33% Similarity=0.481 Sum_probs=228.7
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
.+|.++++++| +.++|.||+ +||||+|+||+..+||+ ||+|.+|+.+|+.+++|+++..++.+ +.+++++|.
T Consensus 37 ~~pv~~~~gkg--~kl~D~~g~----EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~ 108 (433)
T KOG1401|consen 37 RYPVVIESGKG--SKLFDPDGK----EYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLS 108 (433)
T ss_pred CCceeeeccee--eeeecCCcc----eeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHH
Confidence 46777777666 489999999 99999999999999999 99999999999999999986555555 999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..++++.+||||||||+||||+|||+| |+++..+- +..+.+||+|+|||||+|+|+|++++.+.|+
T Consensus 109 ~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~~~~~------------~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~ 175 (433)
T KOG1401|consen 109 AVLGKGSAERVFFCNSGTEANETALKFA-RKFTGKKH------------PEKKTKFIAFENSYHGRTLGALSVTGNSKYG 175 (433)
T ss_pred hcccCCCccEEEEecCCcHHHHHHHHHH-HHhhcccC------------CccceeEEEEecCcCCcchhHHHhhcccccC
Confidence 9998888999999999999999999999 66655431 1334789999999999999999999877665
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
-+ ++|- .|+.. +.+|||. .++++.++
T Consensus 176 ~~------------~~p~------------~p~v~--------~~~ynd~------------------t~l~k~~~---- 201 (433)
T KOG1401|consen 176 LP------------FDPI------------APDVV--------TAEYNDS------------------TALEKLFE---- 201 (433)
T ss_pred CC------------CCCC------------CCcee--------ecccCCH------------------HHHHHHHH----
Confidence 43 2221 11111 1235652 56888887
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+.++|||||+||| ||+||++++.++|++.||++|+++|++||+|||||||||+|..|++++++++|||+|+||.|||
T Consensus 202 -~h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~g 279 (433)
T KOG1401|consen 202 -SHKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGG 279 (433)
T ss_pred -hCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccC
Confidence 46788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcCCCC
Q 005009 694 GVIPLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~~~~ 716 (719)
| +|+||++++++|++.|..++.
T Consensus 280 G-lPigA~~v~~kV~~~i~~~~~ 301 (433)
T KOG1401|consen 280 G-LPIGATGVRDKVAEMISPGDH 301 (433)
T ss_pred C-ceeEEEeehHHHHhhcCCCCc
Confidence 9 899999999999999977654
No 23
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=4.2e-57 Score=504.89 Aligned_cols=291 Identities=30% Similarity=0.461 Sum_probs=238.6
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
++.+++|+||++... ..++.++++++| +|+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~ 79 (429)
T PRK06173 9 LDRQHIWHPYSSVTD--PIPVYPVERADG--VMITLKDGR----RLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHI 79 (429)
T ss_pred hhhcccccccccccc--cCCCceEEecee--eEEEcCCCC----EEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCc
Confidence 455678999876532 122346777666 589999999 99999999999999999 999999999999998877
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
.+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+++
T Consensus 80 ~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~ 145 (429)
T PRK06173 80 MFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE------------VQRTKFATIRSG 145 (429)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEECCC
Confidence 655578999999999999998754 789999999999999999999 788765543 568899999999
Q ss_pred cccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCch
Q 005009 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (719)
Q Consensus 516 yHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~ 594 (719)
|||+|.+++++++.. .++.. +.+.. ++..++|.|+.+ +. .
T Consensus 146 yHG~t~~a~s~~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~-----------~~------------~ 186 (429)
T PRK06173 146 YHGDTWHAMSVCDPVTGMHGL--------FNHSL--------PVQYFLPQPSIK-----------FG------------E 186 (429)
T ss_pred cCCcchhhhccCCCchhhhhc--------ccccC--------CCCeEeCCCCcc-----------cc------------h
Confidence 999999999998742 23221 11110 123345555322 10 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 595 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
.+...+++.+++.|++ .+++|||||+|||+||+||+++||++|+++|+++|++||++||+|||||||||||++|+
T Consensus 187 ~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a 261 (429)
T PRK06173 187 EWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA 261 (429)
T ss_pred hHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH
Confidence 2233456778888863 45789999999955999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 675 ~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++++|++|||+|+||+|||||+|+|++++++++++.|..
T Consensus 262 ~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~ 300 (429)
T PRK06173 262 LEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICS 300 (429)
T ss_pred HHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhc
Confidence 999999999999999999999999999999999998853
No 24
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=100.00 E-value=7.4e-57 Score=505.29 Aligned_cols=296 Identities=23% Similarity=0.348 Sum_probs=242.6
Q ss_pred CCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC
Q 005009 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (719)
Q Consensus 358 ~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~ 437 (719)
...+|+|++++..+. ..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~-~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFK-AAPRLLVSAEGM--YYTDADGR----KILDGTAGLWCCNAGHG-RPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccC-CCCceEEecccc--EEEeCCCC----EEEEccccHhhccCCCC-CHHHHHHHHHHHHhccCccc
Confidence 355799987765432 347788887665 89999999 99999999999999999 99999999999999887765
Q ss_pred CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcc
Q 005009 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (719)
Q Consensus 438 ~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syH 517 (719)
..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++++|. ++|.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQ------------GTRTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcC
Confidence 4577999999999999998754 689999999999999999999 788755443 45789999999999
Q ss_pred cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhH
Q 005009 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 518 G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
|+|.+++++++...++.. +++. .++..++++|+ .+++. +.. ..+.+
T Consensus 153 G~t~gals~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~--------~~~---------~~~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKM--------FGGL--------LPGVDHLPHTLDLPENA--------FSK---------GQPEH 199 (445)
T ss_pred ccchhhhccCCChhhhhc--------cCCC--------CCCCeEeCCCccccccc--------cCC---------ChHHH
Confidence 999999999986544332 1111 11234455553 22211 111 11233
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
...+.+.+++.++. .+++++||||+||| ||++|++.||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 44556778888874 23578999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 677 ~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|++|||+|+||+|||||+|+|++++++++++.|..
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~ 311 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQ 311 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhcc
Confidence 9999999999999999999999999999999998864
No 25
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=100.00 E-value=1.1e-56 Score=503.37 Aligned_cols=295 Identities=22% Similarity=0.346 Sum_probs=240.6
Q ss_pred CCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC
Q 005009 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (719)
Q Consensus 359 ~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~ 438 (719)
+..|+|+++...+. ..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+....
T Consensus 13 ~~~~~~~~~~~~~~-~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~ 84 (442)
T PRK13360 13 SAFWMPFTANRQFK-KAPRLLVAAKGM--YYTTHDGR----RVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPAF 84 (442)
T ss_pred cccccCcccccccc-CCCceEEeeeee--EEEeCCCC----EEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCcccC
Confidence 44788887654432 357788887665 89999999 99999999999999999 999999999999998776544
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++++|. ++|.+||+|+++|||
T Consensus 85 ~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yHG 150 (442)
T PRK13360 85 QMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE------------GSRTRLIGRERGYHG 150 (442)
T ss_pred CcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEcCCcCC
Confidence 567999999999999998754 689999999999999999999 777654432 457899999999999
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch-hhhcccccccccccCccchhhcccCchhHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~-~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
+|.+++++++...++.. +++.. ++..++|.|+. ++++ |.. +.+.+.
T Consensus 151 ~t~gals~tg~~~~~~~--------~~~~~--------~~~~~~p~~~~~~~~~--------~~~---------~~~~~~ 197 (442)
T PRK13360 151 VGFGGISVGGIVPNRKA--------FGALL--------PGVDHLPHTLDLARNA--------FSK---------GQPEHG 197 (442)
T ss_pred ccHhhhhccCChhhhhc--------cCCCC--------CCCEEeCCCchhhccc--------cCC---------ChHHHH
Confidence 99999999986544432 11111 12334555532 2111 111 112334
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
..+.+.+++.++. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|++++
T Consensus 198 ~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 272 (442)
T PRK13360 198 AELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY 272 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh
Confidence 4567788888864 34578999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 678 ~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 273 ~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~ 308 (442)
T PRK13360 273 FGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQ 308 (442)
T ss_pred cCCCCceeeeeeccccCccceEEEEEcHHHHHHhhc
Confidence 999999999999999999999999999999998864
No 26
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.4e-56 Score=499.84 Aligned_cols=288 Identities=28% Similarity=0.434 Sum_probs=235.0
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+++.+++|+|+.+.. ..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~----~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~ 74 (422)
T PRK05630 6 EFDHRHIWHPYAAPG----VRNRLVTSTDGV--FLTLEDGS----TVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTMSH 74 (422)
T ss_pred hccccccccCcccCC----CCCeeEEeceee--EEEECCCC----EEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 345567888876522 357788886665 89999999 99999999999999999 99999999999999887
Q ss_pred ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeC
Q 005009 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (719)
Q Consensus 435 ~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~ 514 (719)
..+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|.+||+|++
T Consensus 75 ~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~ 140 (422)
T PRK05630 75 VMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGH------------PERTRLLTWRS 140 (422)
T ss_pred cccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECC
Confidence 7654568999999999999988754 689999999999999999999 778754443 56889999999
Q ss_pred CcccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 515 SYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 515 syHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
+|||+|.+++++++.. .++.. | .+.+ ++..++|.|.... . +
T Consensus 141 ~yHG~t~~als~~~~~~~~~~~----~----~~~~--------~~~~~~p~~~~~~-----------~----------~- 182 (422)
T PRK05630 141 GYHGDTFAAMSVCDPEGGMHSL----W----KGTL--------PEQIFAPAPPVRG-----------S----------S- 182 (422)
T ss_pred CcCCccHHHhccCCCccccccc----c----cccC--------CCCeEcCCCcccC-----------C----------C-
Confidence 9999999999998742 22221 1 1110 1223444442110 0 0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
......|.+.+++.+. +++||||+||++||+||+++||++||++|+++|++||++||+|||||||||||++|
T Consensus 183 ~~~~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~ 254 (422)
T PRK05630 183 PQEISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254 (422)
T ss_pred hHHHHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh
Confidence 0112345666776664 48999999995599999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++++|++|||+|+||+|||||+|+|++++++++++.|..
T Consensus 255 a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~ 294 (422)
T PRK05630 255 ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLIST 294 (422)
T ss_pred HHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhc
Confidence 9999999999999999999999999999999999998853
No 27
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=100.00 E-value=4.4e-56 Score=496.38 Aligned_cols=289 Identities=28% Similarity=0.426 Sum_probs=235.8
Q ss_pred hCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc
Q 005009 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (719)
Q Consensus 357 ~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~ 436 (719)
+.+++|+|++++.. ..+|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+..
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~ 79 (428)
T PRK07986 9 DQRHIWHPYTSMTS--PLPVYPVVSAEGC--ELILADGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVM 79 (428)
T ss_pred cccccccCCccccc--CCCCeeEEeeeee--EEEeCCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcc
Confidence 44668999877643 2345778887665 89999999 99999999999999999 9999999999999988766
Q ss_pred CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCc
Q 005009 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (719)
Q Consensus 437 ~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~sy 516 (719)
+..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+| .+|.+||+|+++|
T Consensus 80 ~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g-------------~~r~kii~~~~~y 144 (428)
T PRK07986 80 FGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EPRQRFLTLRHGY 144 (428)
T ss_pred ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC-------------CCCcEEEEECCCc
Confidence 54568999999999999998754 689999999999999999999 77764432 3478999999999
Q ss_pred ccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchh
Q 005009 517 HGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (719)
Q Consensus 517 HG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (719)
||+|.+++++++.. .++.. +.++ .++..+++.|+.+. . ++
T Consensus 145 HG~t~~a~s~~~~~~~~~~~--------~~~~--------~~~~~~~~~p~~~~-----------~------------~~ 185 (428)
T PRK07986 145 HGDTFGAMSVCDPDNSMHSL--------YKGY--------LPENLFAPAPQSRF-----------D------------GE 185 (428)
T ss_pred CCCcHhhhcccCCchhhhhc--------cCCC--------CCCCEEECCCCccc-----------c------------hh
Confidence 99999999998742 22221 1111 12234455553221 0 01
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc
Q 005009 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 596 ~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
+...+.+.+++.+++ .++++||||+||++||+||++++|++||++|+++|++||++||+|||||||||||++|++
T Consensus 186 ~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~ 260 (428)
T PRK07986 186 WDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFAC 260 (428)
T ss_pred hHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeee
Confidence 112224667777763 357899999999559999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 261 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~ 298 (428)
T PRK07986 261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISN 298 (428)
T ss_pred cccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhc
Confidence 99999999999999999999999999999999999865
No 28
>PRK06917 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-56 Score=497.14 Aligned_cols=277 Identities=25% Similarity=0.278 Sum_probs=227.8
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~ 457 (719)
++++++| +|+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+|+|+|++.+|
T Consensus 16 ~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISHGKG--VYLYDQNGN----KYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEeeee--eEEEeCCCC----EEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 5777666 589999999 99999999999999999 9999999999999987664444679999999999999987
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.+ +++++|+||||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++..
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~------------t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~-- 152 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI------------QGKHKILSRWMSYHGITMGALSMSGHPLRRQR-- 152 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCcccccc--
Confidence 54 579999999999999999999 677655544 67889999999999999999999875543321
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
+.+.+ ++...++.|.+++++ +++ +...+...+.+.+++.+++ .++
T Consensus 153 ------~~~~~--------~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 153 ------FVSLL--------EDYPTISAPYCYRCP--------VQK---------VYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred ------CCCCC--------CCCeEeCCCcccccc--------cCC---------ChHHHHHHHHHHHHHHHHh----cCC
Confidence 11111 122344555444321 111 1123344556778888874 234
Q ss_pred CcEEEEEEcccccc-CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCcc
Q 005009 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (719)
Q Consensus 618 ~~iAAvIvEPViqg-~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~ 696 (719)
++|||||+||| || .||+++||++||++|+++|++||++||+|||||||||||++|+++++||+|||+|+||+|||||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 88 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
|+|++++++++++.|..
T Consensus 277 Pi~a~~~~~~i~~~~~~ 293 (447)
T PRK06917 277 PIAATVVSDRVMEPILR 293 (447)
T ss_pred ceEEEEEcHHHHHHHhc
Confidence 99999999999998864
No 29
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=100.00 E-value=3.7e-56 Score=483.64 Aligned_cols=269 Identities=29% Similarity=0.436 Sum_probs=221.9
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~ 457 (719)
+|++++|. |+||.||+ +||||++|+|++++||+ ||+|++|+++|++++.+.++..+.+++..+|+++|++.+|
T Consensus 1 ~i~~a~G~--~l~d~dG~----~~lD~~~~~~~~~lGh~-~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p 73 (339)
T PF00202_consen 1 FIERAEGA--YLWDVDGR----EYLDFMSGYGSVNLGHN-HPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFP 73 (339)
T ss_dssp EEEEEEBT--EEEETTSE----EEEESSHHHHTTTT-BT--HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSS
T ss_pred CeEEeecC--EEEECCCC----EEEECCCCccceecCCC-ccccchhHHHHhhhcccccccceeccchhhhhhhhhhccc
Confidence 46777776 79999999 99999999999999999 9999999999999998887677889999999999999997
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.+ +++|+|++|||||||+|||+| |+|..+++. ++|.+||+|+++|||+|.+++++++...++.. .
T Consensus 74 ~~-~~~v~f~~sGseAve~Alkla-~~~~~~~~~------------~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~-~ 138 (339)
T PF00202_consen 74 GG-LDRVFFANSGSEAVEAALKLA-RQYHNKRAY------------TGRRKILAFEGSYHGRTLGALSLTGNPPYRKG-F 138 (339)
T ss_dssp TT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTHH------------HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT-T
T ss_pred cc-cceeeeccCchHHHHHHHHHh-hcccccccc------------cCCceEEEeeeeeeccCcccccccCCcccccc-c
Confidence 64 799999999999999999999 555544332 56789999999999999999999887655543 1
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
.++ ..+..++|+|+... +.....+.+.+++.+.+ ..+
T Consensus 139 ~~~---------------~~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~ 175 (339)
T PF00202_consen 139 GPL---------------YPGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNA 175 (339)
T ss_dssp CSS---------------STTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHG
T ss_pred ccc---------------ccccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcC
Confidence 111 12234556654431 11222334455555543 346
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~P 697 (719)
++|||||+||| ||++|++++|++||++|+++|+|||++||+|||||||||||++|+++++|++|||+|+||+|||| +|
T Consensus 176 ~~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LP 253 (339)
T ss_dssp GGEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SS
T ss_pred CcEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hh
Confidence 79999999997 99999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred hheeEeCHHHHhhhcC
Q 005009 698 LAATLATNAVFDSFVG 713 (719)
Q Consensus 698 lsavl~~~~i~~~~~~ 713 (719)
+|++++++++++.+..
T Consensus 254 ~sav~~~~~i~~~~~~ 269 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQP 269 (339)
T ss_dssp EEEEEEEHHHHTTSCT
T ss_pred cccccccchhhccccc
Confidence 9999999999998854
No 30
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=100.00 E-value=3.5e-55 Score=490.16 Aligned_cols=253 Identities=23% Similarity=0.318 Sum_probs=212.3
Q ss_pred CCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCe
Q 005009 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (719)
Q Consensus 384 G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~r 463 (719)
+.|+|+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+ ..+.+++..+|||+|++.+|.+ +++
T Consensus 64 ~~g~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Av~~ql~~l~~~~-~~~~~~~~~~lAe~L~~~~p~~-~~~ 136 (442)
T TIGR03372 64 GGLNTLIDTQGN----EFIDCLGGFGIFNVGHR-NPNVIAAVENQLAKQPLHS-QELLDPLRALLAKTLAALTPGK-LKY 136 (442)
T ss_pred CCeeEEEECCCC----EEEECCccHHhhhcCCC-CHHHHHHHHHHHHhCCCcc-cccCCHHHHHHHHHHHHhCCCC-cCE
Confidence 445689999999 99999999999999999 9999999999999987654 2456999999999999998765 589
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
++|+||||||||+|||+| |.|+..+ +|.+||+++++|||+|.+++++|+...++..
T Consensus 137 v~f~~SGsEA~e~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~-------- 192 (442)
T TIGR03372 137 SFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIAASGAFHGKSLGALSATAKPAFRKP-------- 192 (442)
T ss_pred EEEeCCchHHHHHHHHHH-HHHHhhc---------------CCcEEEEECCCccCCCHHHhhccCCcccCCC--------
Confidence 999999999999999999 7887432 3578999999999999999999986544432
Q ss_pred CCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv 623 (719)
+.+. .+++.++|+ +|. +.+++.+++.. .+++++|||
T Consensus 193 ~~p~--------~~~~~~~p~----------------~d~------------------~~~~~~l~~~~--~~~~~vAav 228 (442)
T TIGR03372 193 FMPL--------LPGFHHVAF----------------GDI------------------EAMLKALNECK--KTGDDVAAI 228 (442)
T ss_pred CCCC--------CCCCEEeCC----------------CCH------------------HHHHHHHHHHh--cCCCcEEEE
Confidence 1111 123334443 332 12223332210 246789999
Q ss_pred EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEe
Q 005009 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 624 IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~ 703 (719)
|+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+|||||+|+||+++
T Consensus 229 IvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~ 307 (442)
T TIGR03372 229 ILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIA 307 (442)
T ss_pred EEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEe
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhc
Q 005009 704 TNAVFDSFV 712 (719)
Q Consensus 704 ~~~i~~~~~ 712 (719)
++++++.|.
T Consensus 308 ~~~i~~~~~ 316 (442)
T TIGR03372 308 TEAVFSVLF 316 (442)
T ss_pred cHHHHHhhh
Confidence 999999884
No 31
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=5.8e-55 Score=491.97 Aligned_cols=274 Identities=20% Similarity=0.210 Sum_probs=221.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+|+++|++
T Consensus 45 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 117 (464)
T PRK06938 45 IPLALKRARGI--YVEDVEGR----QFIDCLAGAGTLALGHN-HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFA 117 (464)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccCCccccccCCC-CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHH
Confidence 36678887665 89999999 99999999999999999 9999999999998643222224679999999999999
Q ss_pred ccCCCCC--CeEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 455 GVGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 455 ~~~~~~~--~rv~f~-~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
.+|.+.. ++++|+ ||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...
T Consensus 118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~als~t~~~~ 178 (464)
T PRK06938 118 SLPEAFAREAKIQFCGPTGTDAVEAALKLV-KTATGR------------------STVLSFQGGYHGMSQGALSLMGNLG 178 (464)
T ss_pred hCcccccccceEEEeCCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCccCCccHHHHhhcCCcc
Confidence 8875421 378776 89999999999999 787654 5899999999999999999998644
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. +++. .++..++++|+.++++ |+. ..+++...+.+.+++.+++.
T Consensus 179 ~~~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~l~~~i~~~ 225 (464)
T PRK06938 179 PKKP--------LGAL--------LPGVQFLPYPYDYRCP--------FGL---------GGEAGVRANLHYLENLLDDP 225 (464)
T ss_pred cccc--------CCCC--------CCCcEEeCCCcccccc--------ccC---------chhhHHHHHHHHHHHHHHhh
Confidence 4332 1111 1234567777665432 111 11233445677888888642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||+++++||+|||+|+||+|
T Consensus 226 ~--~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKgl 302 (464)
T PRK06938 226 E--SGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI 302 (464)
T ss_pred c--cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccc
Confidence 1 13368999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchheeEeCHHHHhhhc
Q 005009 692 TGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 ggG~~Plsavl~~~~i~~~~~ 712 (719)
||| +|+||+++++++ +.+.
T Consensus 303 ggG-~PlsAv~~~~~~-~~~~ 321 (464)
T PRK06938 303 GGS-LPLAVVVYREWL-DTWQ 321 (464)
T ss_pred cCC-CceEEEeehhHh-hccC
Confidence 999 799999999996 6653
No 32
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=5.4e-55 Score=491.33 Aligned_cols=261 Identities=23% Similarity=0.307 Sum_probs=219.6
Q ss_pred CCeEEEEeecC-CceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHH
Q 005009 374 EAVTVIDSRCG-ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452 (719)
Q Consensus 374 ~~p~vi~~~~G-~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L 452 (719)
..|.++++++| . |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+ ..+.++...+|+++|
T Consensus 62 ~~~~~~~~~~G~~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~lae~L 133 (459)
T PRK11522 62 DYGAVEWQAGGLN--TLVDTQGQ----EFIDCLGGFGIFNVGHR-NPVVVSAVQNQLAKQPLHS-QELLDPLRAMLAKTL 133 (459)
T ss_pred CCCeeEEeccCeE--EEEECCCC----EEEECCcCHHhhhcCCC-CHHHHHHHHHHHhhCcccc-cccCCHHHHHHHHHH
Confidence 34667877766 5 89999999 99999999999999999 9999999999999987754 246799999999999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++.+|.+ +++++|+||||||||+|||+| |.|++++ +|.+||+++++|||+|.+++++++...+
T Consensus 134 ~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~~~~~~~ 196 (459)
T PRK11522 134 AALTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIATSGAFHGKSLGALSATAKSTF 196 (459)
T ss_pred HHhCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC---------------CCcEEEEecCCCCCCcHHHhhhcCCccc
Confidence 9998765 689999999999999999999 8888653 2568999999999999999999986544
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.+ +.+.. +++.++ +|||. +.+++.++...
T Consensus 197 ~~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~~~~ 226 (459)
T PRK11522 197 RKP--------FMPLL--------PGFRHV----------------PFGNI------------------EAMRTALSECK 226 (459)
T ss_pred ccC--------CCCCC--------CCCccc----------------CCCCH------------------HHHHHHHHHhh
Confidence 432 11110 112222 24442 23444554211
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
..+++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+||
T Consensus 227 --~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg 303 (459)
T PRK11522 227 --KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALG 303 (459)
T ss_pred --ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhh
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
|||+|+||+++++++++.|.
T Consensus 304 gG~~Pigav~~~~~i~~~~~ 323 (459)
T PRK11522 304 GGVMPIGATIATEEVFSVLF 323 (459)
T ss_pred CCCccceeEEEcHHHHHHhc
Confidence 99999999999999999874
No 33
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-54 Score=487.45 Aligned_cols=277 Identities=21% Similarity=0.255 Sum_probs=226.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++
T Consensus 35 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 107 (457)
T PRK05639 35 FPLVPKRGFGA--LIEDVDGN----VFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAE 107 (457)
T ss_pred CCceEEeeecC--EEEeCCCC----EEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHh
Confidence 36788887776 89999999 99999999999999999 9999999999999987765433457899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
.+|.+ +++|+|+||||||||+|||+| |++++| .+||+|+++|||+|.+++++++.. .++
T Consensus 108 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 167 (457)
T PRK05639 108 ISPIE-NPKVLFGLSGSDAVDMAIKVS-KFSTRR------------------PWILAFIGAYHGQTLGATSVAAFQSSQK 167 (457)
T ss_pred hCCCC-cCEEEEeCchHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHHHcCCCcccc
Confidence 98754 579999999999999999999 788654 589999999999999999998742 122
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. ++.+. .+++.++|+|+.++++.. +++. .+.+.+.+.+.+.+++.+....
T Consensus 168 ~--------~~~~~--------~~~~~~~p~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~le~~l~~~~- 217 (457)
T PRK05639 168 R--------GFSPL--------MPNVVWIPYPNPYRNPWG------INGY-------EEPDELINRFLDYLENYVFSHV- 217 (457)
T ss_pred c--------CCCCC--------CCCceEeCCCcccccccc------cccc-------CCHHHHHHHHHHHHHHHHHHhh-
Confidence 2 11111 134566777776653210 1110 1123445566777887764310
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 218 -~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~g 295 (457)
T PRK05639 218 -VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVAS 295 (457)
T ss_pred -cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcC
Confidence 24679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhh
Q 005009 694 GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~ 711 (719)
| +|+|++++++++++.+
T Consensus 296 G-~pi~av~~~~~i~~~~ 312 (457)
T PRK05639 296 G-MGLSGVIGRKELMDLT 312 (457)
T ss_pred C-CcceeEEehHHHHhhc
Confidence 9 7999999999999843
No 34
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=3.1e-54 Score=485.63 Aligned_cols=274 Identities=19% Similarity=0.188 Sum_probs=219.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+||++|++
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~ 112 (459)
T PRK06931 40 LPLAIAKAQGV--WVTDVEGN----QYLDCLAGAGTLALGHN-HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLS 112 (459)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHH
Confidence 36778887665 89999999 99999999999999999 9999999999998744322234678999999999999
Q ss_pred ccCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 455 GVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 455 ~~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
.+|... ...+||+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...+
T Consensus 113 ~~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~als~t~~~~~ 173 (459)
T PRK06931 113 LLPGQGKEYCLQFTGPSGADAVEAAIKLA-KTYTGR------------------SNVISFSGGYHGMTHGALAVTGNLSP 173 (459)
T ss_pred hCCCccccceEEEeCCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCccc
Confidence 887431 124567799999999999999 788654 58999999999999999999986544
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.. +.+ ..+++.++++|+.++++ |+.. .++..+.+.+.+++.+++..
T Consensus 174 ~~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~ 220 (459)
T PRK06931 174 KNA--------VNG--------LMPGVQFMPYPHEYRCP--------LGIG---------GEAGVKALTYYFENFIEDVE 220 (459)
T ss_pred ccC--------CCC--------CCCCcEEeCCCcccccc--------ccCC---------chhHHHHHHHHHHHHHHhhh
Confidence 332 111 11345667888777542 2210 11222333444555554210
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||+++++||+|||+|+||+||
T Consensus 221 --~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~ 297 (459)
T PRK06931 221 --SGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVG 297 (459)
T ss_pred --cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEeccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
|| +|+|++++++++ +.|.
T Consensus 298 gG-~Pi~av~~~~~~-~~~~ 315 (459)
T PRK06931 298 GG-LPLAVLGIKKEF-DAWQ 315 (459)
T ss_pred CC-cceeeeeeHHHH-hhcc
Confidence 99 799999999875 7663
No 35
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=6.2e-54 Score=483.18 Aligned_cols=276 Identities=23% Similarity=0.322 Sum_probs=228.3
Q ss_pred CccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCC
Q 005009 360 LFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE 439 (719)
Q Consensus 360 ~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~ 439 (719)
++|+|++.. ..|+++++++|. |+||.||| +||||++ .|++++||+ ||+|++|+++|++++.+.. ..
T Consensus 44 ~~~~~~~~~-----~~~~~i~~a~G~--~l~D~dG~----~ylD~~g-~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~-~~ 109 (459)
T PRK06082 44 VFLHQAMST-----PCLDVLASAEGI--YIEDVDGK----KYMDFHG-NNVHQLGYG-HPHVIEKVKEQMAKLPFSP-RR 109 (459)
T ss_pred HhcccccCC-----CCCceEEeeeee--EEEECCCC----EEEEccc-HhhcccCCC-CHHHHHHHHHHHHhCCCcc-Cc
Confidence 356665331 236788887775 89999999 9999985 599999999 9999999999999987754 35
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.+++..+|+++|++.+|.+ +++++|++|||||||+|+|+| |+|++| .+||+|+++|||+
T Consensus 110 ~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~ 169 (459)
T PRK06082 110 FTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHITGN------------------FKVVSLWDSFHGA 169 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHhcCC------------------CEEEEEeCCCcCc
Confidence 67999999999999998753 579999999999999999999 788654 5899999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
|.+++++++...++.. +++. .+++.+++.|+.++++ |++. +.+...
T Consensus 170 t~~a~s~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~~--------~~~~----------~~~~~~ 215 (459)
T PRK06082 170 SLDAISVGGEACFRQG--------MGPL--------MAGVERIPPAVSYRGA--------FPDA----------DGSDVH 215 (459)
T ss_pred cHHHHhhcCCcccccC--------CCCC--------CCCCEEeCCCcccccc--------cCCh----------hHHHHH
Confidence 9999999986554432 1111 1345667777666432 3331 234455
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
+.+.+++.+++ .+++||||+||| ||+| +++||++||++|+++|++||++||+|||||||||||+||+++++|
T Consensus 216 ~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~g 287 (459)
T PRK06082 216 YADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYG 287 (459)
T ss_pred HHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhC
Confidence 67888888863 358999999998 9985 788999999999999999999999999999999999999999999
Q ss_pred CCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
++|||+|+||+|||||+|+|++++++++++.+
T Consensus 288 v~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~ 319 (459)
T PRK06082 288 IEPDILCIGKGLGGGLVPIAAMITKDKYNTAA 319 (459)
T ss_pred CCCCEEEecccccCCCCcceEEEEcHHHHhhc
Confidence 99999999999999988999999999998765
No 36
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.1e-53 Score=477.21 Aligned_cols=289 Identities=31% Similarity=0.495 Sum_probs=239.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.++..+++|+|++++... ..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVRAEGA--YLYLADGR----ELIDAISSWWVATHGHN-HPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEecccc--EEEeCCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHhhC
Confidence 3445567789998775432 257888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+..+..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++|.+||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~------------~~r~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE------------PGRSRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 876544578999999999999998754 689999999999999999999 777655443 568899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. | . +. ..+..++++| ++|
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~----~-~---~~--------~~~~~~~~~~--------------~~d---------- 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL----Y-T---PL--------LFEQVTAPFP--------------PDG---------- 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc----c-c---Cc--------CCCCEEeCCC--------------cch----------
Confidence 99999999999999875443321 1 0 00 0122344444 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
....+.+.+++.+.+ .++++||||+||++||+||++++|++||++|+++|++||++||+|||||||||||++
T Consensus 181 ---~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 123346778888863 457999999999449999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++++|+.|||+|+||+|+||++|+|++++++++++.|.
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~ 292 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFY 292 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhh
Confidence 9999999999999999999999899999999999999885
No 37
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=2e-53 Score=477.61 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=229.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+...+.++...+|+++|++
T Consensus 24 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 96 (445)
T PRK08593 24 YPLVIDHGYGA--TLTDVDGK----TYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCE 96 (445)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788887665 89999999 99999999999999999 9999999999999988776545679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
.+|.++.++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++... ++
T Consensus 97 ~~p~~~~~~v~f~~SGseA~e~AiklA-r~~tgr------------------~~ii~~~~~YHG~t~~als~s~~~~~~~ 157 (445)
T PRK08593 97 LAPGDFEKRVTFGLSGSDANDGIIKFA-RAYTGR------------------PYIISFTNAYHGSTYGSLSMSGISLNMR 157 (445)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCCcHHHHhhcCCCcccc
Confidence 987653479999999999999999999 788754 4899999999999999999997432 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +++. .++..++|+|+.+++.. .. ...+....+++.+++.++++
T Consensus 158 ~~--------~~~~--------~~~~~~~~~p~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~-- 202 (445)
T PRK08593 158 RK--------YGPL--------LPGFVHIPFPDKYRGMY--------EE---------PDANFVEEYLAPLKEMFEKY-- 202 (445)
T ss_pred cC--------CCCC--------CCCcEEeCCCccccccc--------cC---------CcHHHHHHHHHHHHHHHHhh--
Confidence 21 1111 13456778887765421 11 01233455667777777642
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 203 -~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~ 280 (445)
T PRK08593 203 -LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAG 280 (445)
T ss_pred -cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccC
Confidence 23578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +|+|++++++++++.|.
T Consensus 281 G-~p~gav~~~~~i~~~~~ 298 (445)
T PRK08593 281 G-MPMSAIVGRKEIMESLE 298 (445)
T ss_pred C-cccEEEEEcHHHHhhhc
Confidence 9 79999999999999885
No 38
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-54 Score=441.81 Aligned_cols=259 Identities=23% Similarity=0.337 Sum_probs=223.9
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++.+++|. ++||.+|+ +||||.|++++++.||| ||.|++|+++|++++..++. .+.++...++++.+.++
T Consensus 42 pvvf~ka~g~--~vwD~eGk----~ylDflsaysaVnqGhc-hpki~~aLqeq~~kLtlssr-afYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSKAKGS--RVWDPEGK----EYLDFLSAYSAVNQGHC-HPKIIKALQEQADKLTLSSR-AFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEecCCc--EEECCCcc----chhhhhhhhhhcccCCC-CHHHHHHHHHHHhHhhhhhH-HHhhhhHHHHHHHHHHh
Confidence 6678777775 79999999 99999999999999999 99999999999999887663 46788999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+| .++|+-+|||+||+|.|+|+|+++.+..++. ..++.+|++..++|||+|+++++++..+ .|.
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~i-----------p~nka~il~~~~nFhGrT~~ais~s~d~ds~~- 178 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLARKWGYRKKNI-----------PKNKAKILSAENNFHGRTLGAISLSTDPDSWD- 178 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHHHHHHHhhccC-----------CccceeEEEecccccCceeeeEEecCCcchhh-
Confidence 98 5899999999999999999995455555543 1478899999999999999999999754 222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++++|. |.+ +. -++|+| +++++..|+
T Consensus 179 --------~fgp~~--P~~-----~~----------------~v~Y~d------------------~eale~~l~----- 204 (427)
T KOG1402|consen 179 --------GFGPFL--PGV-----VD----------------KVPYGD------------------AEALEVALK----- 204 (427)
T ss_pred --------ccCCCC--CCc-----ce----------------eeccCC------------------HHHHHHHhc-----
Confidence 334432 111 11 134776 367787876
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..++||||+||| ||++|+++||++||+++|+||+||+++||+||||||+||||+||+++|.+++||||.|||+|+||
T Consensus 205 --~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG 281 (427)
T KOG1402|consen 205 --SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGG 281 (427)
T ss_pred --CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCC
Confidence 379999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcCC
Q 005009 695 VIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~~ 714 (719)
++|+|||++++++|..+..+
T Consensus 282 ~~Pvsavl~~~~im~~~~pg 301 (427)
T KOG1402|consen 282 VYPVSAVLADDDIMLNIKPG 301 (427)
T ss_pred eeeeEEEEecHHHHhccCCC
Confidence 99999999999999988653
No 39
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=2.6e-53 Score=476.79 Aligned_cols=273 Identities=25% Similarity=0.302 Sum_probs=219.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.++...+|+++|++
T Consensus 38 ~p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~ 110 (443)
T PRK06058 38 LPVYVARAGGG--IVEDVDGN----RLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNR 110 (443)
T ss_pred CCceEEeeeee--EEEeCCCC----EEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788887775 89999999 99999999999999999 9999999999999987655444568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
.+|....++++|+||||||||+|||+| |.|++| .+||+++++|||+|.+++++|+... ++
T Consensus 111 ~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~al~~~~~~~~~~ 171 (443)
T PRK06058 111 LTPGDHEKRSALFNSGAEAVENAVKIA-RSYTGR------------------QAVVVFDHAYHGRTNLTMALTAKSMPYK 171 (443)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCcChHHHHhhcCCCcccc
Confidence 887533469999999999999999999 788654 4899999999999999999987421 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. ++++. .++..++++|++|+.. ++. ..+.+++...+.+.+++.+
T Consensus 172 ~--------~~~~~--------~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~l~~~~----- 215 (443)
T PRK06058 172 S--------GFGPF--------APEVYRAPMSYPYRDP--------KGL-------ATDGEEAAARAITVIEKQV----- 215 (443)
T ss_pred c--------ccCCC--------CCCceEcCCCcccccc--------ccc-------ccchHHHHHHHHHHHHHhh-----
Confidence 1 11111 1223445555444210 000 0111122333344444433
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++|||||+||+ ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 216 --~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~ 292 (443)
T PRK06058 216 --GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAG 292 (443)
T ss_pred --CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccC
Confidence 2578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 293 G-~Pi~av~~~~~i~~~~~~ 311 (443)
T PRK06058 293 G-LPLSAVTGRAEIMDAPHP 311 (443)
T ss_pred C-CccEEEEEcHHHHhhccC
Confidence 9 799999999999998853
No 40
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.5e-52 Score=470.04 Aligned_cols=274 Identities=24% Similarity=0.312 Sum_probs=226.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++| +|+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+||++|++
T Consensus 36 ~p~~~~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~ 108 (441)
T PRK05769 36 YPLVIERGEG--VWVEDVDGN----VYLDFNAGIAVTNVGHA-HPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVE 108 (441)
T ss_pred CCeeEEecce--EEEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHH
Confidence 4677877666 589999999 99999999999999999 9999999999999988765545679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
.+|.+.+++|+|+||||||||+|||+| |+|++| .+||+|+++|||+|.+++++++... ++
T Consensus 109 ~~p~~~~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 109 IAPGGFEKKVFFTNSGTESNEAAIKIA-RYHTGR------------------KYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHHhCC------------------CeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 987544689999999999999999999 788764 4899999999999999999986422 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHH-hcCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL-LQNP 612 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l-~~~~ 612 (719)
.. +.+ ..+++.++++|+.++++ |++. +.++..+.+.+.+++.+ ++.
T Consensus 170 ~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~le~~~~~~~- 216 (441)
T PRK05769 170 KG--------FFP--------LMPGVIHVPYPNPYRNP--------WGIE--------NPEECGNAVLDFIEDYLFKKL- 216 (441)
T ss_pred cC--------CCC--------CCCCeEEeCCCcccccc--------ccCC--------chHHHHHHHHHHHHHHHHhhc-
Confidence 11 111 11345667777666432 3311 12234445667777733 321
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
.++++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||++|
T Consensus 217 --~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~ 293 (441)
T PRK05769 217 --VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIA 293 (441)
T ss_pred --cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccccc
Confidence 24678999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhh
Q 005009 693 GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~ 711 (719)
|| +|+|++++++++++.+
T Consensus 294 ~G-~p~gav~~~~~i~~~~ 311 (441)
T PRK05769 294 GG-LPLGAVIGRAELMFLP 311 (441)
T ss_pred CC-cccEEEEEehhhhhcC
Confidence 99 7999999999998754
No 41
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=100.00 E-value=2.3e-52 Score=468.96 Aligned_cols=273 Identities=19% Similarity=0.217 Sum_probs=218.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+||++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 93 (442)
T TIGR00709 21 LPTAFAKAQGC--WVTDVEGK----EYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLN 93 (442)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36678887665 89999999 99999999999999999 9999999999999876554334678999999999999
Q ss_pred ccCCC--CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 455 GVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 455 ~~~~~--~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++|.+ ...++||+||||||||+|||+| |+|++| .+||+++++|||+|.+++++++...+
T Consensus 94 ~~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~~s~t~~~~~ 154 (442)
T TIGR00709 94 IIPKRKMDYKLQFPGPSGADAVEAAIKLA-KTYTGR------------------TNVISFSGGFHGMTIGALAVTGNLFA 154 (442)
T ss_pred hCCCcCCCccEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCchHHHHhhcCChhh
Confidence 88742 1234666799999999999999 788654 48999999999999999999985444
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.. +.+. .+++.++++|+.++++ |+. +.+.....+.+.+++.++...
T Consensus 155 ~~~--------~~~~--------~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00709 155 KNA--------VGML--------MPGVQFMPYPHEYRCP--------FGI---------GGEAGSNASIEYFENFIEDVE 201 (442)
T ss_pred hcc--------CCCC--------CCCcEEeCCCcccccc--------ccC---------CchhHHHHHHHHHHHHHHhhc
Confidence 332 1111 1234456667665432 221 011222333444555554311
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
...+++||||+||+ ||++|+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+||
T Consensus 202 --~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~ 278 (442)
T TIGR00709 202 --SGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVG 278 (442)
T ss_pred --cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhh
Q 005009 693 GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~ 711 (719)
|| +|+|+++++++ ++.+
T Consensus 279 ~G-~Pigav~~~~~-~~~~ 295 (442)
T TIGR00709 279 GG-LPLAVLLIAPE-FDAW 295 (442)
T ss_pred CC-cccEEEEEchH-Hhcc
Confidence 99 79999999999 5665
No 42
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=8.3e-52 Score=462.10 Aligned_cols=267 Identities=24% Similarity=0.308 Sum_probs=223.2
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++.
T Consensus 23 p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADRAENA--EIWDKEGR----RYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEeeeec--EEEeCCCC----EEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 6788887775 89999999 99999999999999999 99999999999999887654456789999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+|.++.++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAATGR------------------SAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 87653479999999999999999999 788654 489999999999999999998742 2222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++++. .++..++|+|+.+++. ..+.+++.+++.+.+.
T Consensus 157 --------~~~~~--------~~~~~~~~~~~~~~g~------------------------~~~~~~~~l~~~~~~~--- 193 (425)
T PRK07495 157 --------GFGAM--------MPDVYHVPFPVELHGV------------------------SVEQSLAALDKLFKAD--- 193 (425)
T ss_pred --------CCCCC--------CCCeEEecCCcccccc------------------------cHHHHHHHHHHHHHhc---
Confidence 22211 1345567776544210 0122346677777531
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++||||+||+ ||++|++++|++|+++|+++|++||++||+|||||||||||++|+++++|++|||+||||+||||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 273 -~pigav~~~~~i~~~~~~ 290 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGP 290 (425)
T ss_pred -ccceEEEEcHHHHhccCC
Confidence 799999999999998754
No 43
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=1.2e-51 Score=461.44 Aligned_cols=256 Identities=22% Similarity=0.339 Sum_probs=212.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+. .+.++...+|+++|++
T Consensus 35 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 104 (428)
T PRK12389 35 APVVMERGKGA--YFYDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITEAAENGVLY---GTPTELEIEFAKMLKE 104 (428)
T ss_pred CCeEEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHH
Confidence 47788887665 89999999 99999999999999999 999999999999987653 3678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|. +++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...++.
T Consensus 105 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 163 (428)
T PRK12389 105 AIPS--LEKVRFVNSGTEAVMTTIRVA-RAYTGR------------------TKIIKFAGCYHGHSDLVLVAAGSGPSTL 163 (428)
T ss_pred hCCC--CcEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCChHHHHHhcCCccccc
Confidence 8873 689999999999999999999 788754 5899999999999999999987433221
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. .+...+ + + ....|+.++ ++||| .+.+++.+++
T Consensus 164 ~--~~~~~~----~--~---------~~~~~~~~~--------~~~~d------------------~~~l~~~l~~---- 196 (428)
T PRK12389 164 G--TPDSAG----V--P---------KSIAQEVIT--------VPFND------------------IEALKEALDK---- 196 (428)
T ss_pred C--CCCCCC----C--C---------CcccCceEE--------cCCCC------------------HHHHHHHHHh----
Confidence 0 010000 0 0 000111111 12444 2456677763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++||||+||| ||++|+++||++||++|+++|++||++||+||||||| |||.+|+++++|++|||+|+||+||||
T Consensus 197 -~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG 273 (428)
T PRK12389 197 -WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG 273 (428)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC
Confidence 3578999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+||+++++++++.|.
T Consensus 274 -~Pi~av~~~~~i~~~~~ 290 (428)
T PRK12389 274 -LPIGAYGGRKDIMEQVA 290 (428)
T ss_pred -CceeEEeEHHHHHhhhc
Confidence 79999999999999885
No 44
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=1.8e-51 Score=459.10 Aligned_cols=275 Identities=23% Similarity=0.268 Sum_probs=226.2
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+||++|+
T Consensus 14 ~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~ 86 (420)
T TIGR00700 14 TLPVFAARAEGA--ILEDVDGN----RLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86 (420)
T ss_pred CCCeeEEeeeee--EEEeCCCC----EEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHH
Confidence 347788887775 89999999 99999999999999999 999999999999998876544467889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.+|...+++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++|+...
T Consensus 87 ~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~-- 145 (420)
T TIGR00700 87 RIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYTGR------------------PGVVAFDHGFHGRTNMTMALTAKVM-- 145 (420)
T ss_pred HhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CcEEEECCCcCCCcHHHHHhcCCCc--
Confidence 9887533679999999999999999999 788664 4899999999999999999987421
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
++..+++++ .++..++++|+++++.. .. .......+++.+++.+...
T Consensus 146 -----~~~~~~~~~--------~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~-- 192 (420)
T TIGR00700 146 -----PYKSGFGPF--------APEVYRAPLPYPYRDGL--------LD----------KQLSTDGELAAARAIFVID-- 192 (420)
T ss_pred -----ccccCCCCC--------CCCcEEeCCCccccccc--------cc----------cchhHHHHHHHHHHHHHhh--
Confidence 111222221 12345677776664310 00 0011223456677776411
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| ||++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+++|
T Consensus 193 -~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~ 270 (420)
T TIGR00700 193 -VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLAD 270 (420)
T ss_pred -cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccC
Confidence 34689999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +|+|++++++++++.+.
T Consensus 271 G-~pig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 271 G-LPLSGVTGRAEIMDAPA 288 (420)
T ss_pred C-cceEEEEecHHHHhhcC
Confidence 9 79999999999999875
No 45
>PRK06148 hypothetical protein; Provisional
Probab=100.00 E-value=2e-51 Score=499.67 Aligned_cols=271 Identities=19% Similarity=0.230 Sum_probs=223.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +||||++|+ .++||+ ||+|++|+++|++++.+.+ .+.++...+||++|++
T Consensus 606 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~g~--~~lGH~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~ 674 (1013)
T PRK06148 606 DPIKFVRGWGV--WLIDNRGR----AYLDCFNNV--CHVGHA-HPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTA 674 (1013)
T ss_pred CCceEEEeeec--EEEECCCC----EEEEcccCh--hhcCCC-CHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHH
Confidence 46788887775 89999999 999999985 789999 9999999999999874332 4679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+ +++|+|+||||||||+|||+| |.||+| .+||+|+++|||+|.+++++|+.. ++.
T Consensus 675 ~~p~~-~~~v~f~nSGsEA~e~AlklA-r~~tGr------------------~~ii~~~~~YHG~t~~a~s~s~~~-~~~ 733 (1013)
T PRK06148 675 TLPDG-LTVAFFVNSGSEANSLALRLA-RAHTGQ------------------RDAIVLDHAYHGTTTELIDLSPYK-FNR 733 (1013)
T ss_pred hCCCC-cCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCccCCCcchhhcCchh-hcc
Confidence 98854 689999999999999999999 888765 489999999999999999998732 222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. + ++ + ..++...++.|++|++ +|++.+ .+....|.+.+++.++...
T Consensus 734 ~----~----~~----~---~~~~~~~~~~p~~~~~--------~~~~~~---------~~~~~~~~~~l~~~i~~~~-- 779 (1013)
T PRK06148 734 K----G----GK----G---RPDHVEVAEVPDSYRG--------PERWPD---------AEHGRRFAESVAEQIAAMA-- 779 (1013)
T ss_pred c----C----CC----C---CCCCceEcCCCCcccc--------CCCCCh---------hhhHHHHHHHHHHHHHhhh--
Confidence 1 1 10 0 0123455667776653 244311 1334455666776665321
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeehhccCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..+++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 780 ~~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg 858 (1013)
T PRK06148 780 AKGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN 858 (1013)
T ss_pred ccCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence 34578999999998 999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+||+++++++++.|..
T Consensus 859 G-~Plgav~~~~ei~~~~~~ 877 (1013)
T PRK06148 859 G-HPMGAVVTTREIADSFDN 877 (1013)
T ss_pred C-cceEEEEEcHHHHhhccC
Confidence 9 799999999999998854
No 46
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=3.7e-51 Score=458.27 Aligned_cols=272 Identities=25% Similarity=0.315 Sum_probs=225.3
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+.....+.++...+|+++|+++
T Consensus 26 ~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 98 (433)
T PRK08117 26 NLPVVKGEGC--YYYGVDGK----EYLDFTSGIAVANVGHR-HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEI 98 (433)
T ss_pred CceEEeeeee--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 3678887665 89999999 99999999999999999 99999999999999887654456789999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCC-CCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~-~~~~~ 534 (719)
+|.+ .++++|+||||||||+|||+| |.|++| .+||+++++|||+|.+++++++. ..++.
T Consensus 99 ~~~~-~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 158 (433)
T PRK08117 99 TPGG-LDCFFFSNSGAEAIEGALKLA-KHVTKR------------------PYIISFTGCFHGRTLGALSVTTSKSKYRK 158 (433)
T ss_pred CCCC-CCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCcCHHHHhhcCCCccccc
Confidence 8644 689999999999999999999 778654 58999999999999999998863 22222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+ ..+++.++|+|++++++. . .+.+.+...+.+.+++.+++.
T Consensus 159 ~--------~~~--------~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~l~~~~~~~--- 202 (433)
T PRK08117 159 Y--------YQP--------LLGSVYQAPYPYCDRCPK--------G---------EDPEVCFLECLRDLESLFKHQ--- 202 (433)
T ss_pred c--------CCC--------CCCCcEEeCCCccccccc--------c---------CchhHHHHHHHHHHHHHHHhc---
Confidence 1 111 013456777776654321 0 001122334456788777642
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||+||||
T Consensus 203 ~~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G 281 (433)
T PRK08117 203 VTPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG 281 (433)
T ss_pred cCCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++++++++++.+.
T Consensus 282 -~pigav~~~~~i~~~~~ 298 (433)
T PRK08117 282 -LPLSAVVASKELMEQWP 298 (433)
T ss_pred -CcceeEEEcHHHHhhcc
Confidence 79999999999999874
No 47
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=100.00 E-value=5e-51 Score=456.20 Aligned_cols=293 Identities=28% Similarity=0.451 Sum_probs=233.7
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+.+.+++|+|+..... ...+..+++++| +|+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~--~~~~~~~~~a~G--~~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~ 78 (427)
T TIGR00508 8 LAFDQRHIWHPYTSMSS--PLPVYPVESADG--VELTLDDGR----RLIDGMSSWWAAIHGYN-HPRLNAAAQKQIDKMS 78 (427)
T ss_pred HhccccccccCccCccc--cCCCceEEeeee--eEEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 33445567888766521 123456777666 589999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 434 ~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
+..+..+.++...+|+++|++.+|.+ +++|+|++||+||||+|+|+| |.|++.+|. ++|.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~------------~~r~~il~~~ 144 (427)
T TIGR00508 79 HVMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE------------KNRQKFLTIR 144 (427)
T ss_pred CccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCccEEEEEc
Confidence 76655568999999999999998765 689999999999999999999 677654433 5678999999
Q ss_pred CCcccCccccccccCCCC-CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 514 GSYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 514 ~syHG~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
++|||+|.+++++++... ++. .| .+ . .++..+++.|... |..
T Consensus 145 ~~yHG~t~~~~s~~~~~~~~~~----~~-~~---~--------~~~~~~~~~p~~~-----------~~~---------- 187 (427)
T TIGR00508 145 SGYHGDTFGAMSVCDPENSMHS----LY-KG---Y--------LPEQIFAPAPQNR-----------FDE---------- 187 (427)
T ss_pred CCcCCccHhhhcccCCcccccc----cc-cc---c--------CCCCeEcCCCCcc-----------ccc----------
Confidence 999999999999987432 211 11 00 0 0112233444221 100
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.....+.+.+++.+++ .++++||||+|||+||+||+++++++||++|+++|++||++||+|||||||||||++
T Consensus 188 --~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~ 260 (427)
T TIGR00508 188 --EWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKL 260 (427)
T ss_pred --hhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcc
Confidence 0111224567777763 356899999999659999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++|++|||+|+||+|+|||+|++++++++++++.|..
T Consensus 261 ~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~ 301 (427)
T TIGR00508 261 FACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISS 301 (427)
T ss_pred chhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhc
Confidence 99999999999999999999999999999999999998864
No 48
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=100.00 E-value=6.1e-51 Score=458.69 Aligned_cols=273 Identities=23% Similarity=0.336 Sum_probs=225.0
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+||++|++.
T Consensus 37 ~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQSANGA--LVTDVDGN----QYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEecccc--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 5678887665 89999999 99999999999999999 99999999999999887654456799999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+|.+..++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKYTKR------------------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 88543369999999999999999999 888765 489999999999999999998742 2222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
.++++ .+++.++|+|+.++++. .. ..+...+.+.+.+++.+...
T Consensus 171 --------~~~~~--------~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~--- 214 (451)
T PRK06918 171 --------GFGPF--------APEVYKAPFPYEYRRPE--------GL---------TEEQYDDFMIEEFKNFFISE--- 214 (451)
T ss_pred --------cCCCC--------CCCcEEcCCCccccccc--------cC---------chHHHHHHHHHHHHHHHHhh---
Confidence 11111 12445667776654321 00 01223334455666655321
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..+++|||||+||| ||+||+++||++|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+++||+|++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++++++++++.+.
T Consensus 294 -~pig~v~~~~~i~~~~~ 310 (451)
T PRK06918 294 -VPISGVIGRKEIMDESA 310 (451)
T ss_pred -CccEEEEEcHHHHhccC
Confidence 79999999999999875
No 49
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=6.1e-51 Score=454.88 Aligned_cols=267 Identities=23% Similarity=0.316 Sum_probs=222.8
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 23 p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAERAENA--TLWDVEGR----EYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEeeecC--EEEeCCCC----EEEEcccCHHhhccCCC-CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 6788887776 89999999 99999999999999999 99999999999999887654446789999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+|.+.+++++|+||||||||+|||+| |+|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAYTGR------------------PGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 87433679999999999999999999 788754 489999999999999999998742 2222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
+++++ .++..++++|+.+++ .....+.+.+++.+++.
T Consensus 157 --------~~~~~--------~~~~~~~~~p~~~~~------------------------~~~~~~~~~l~~~~~~~--- 193 (421)
T PRK06777 157 --------GFGPF--------PGSIFHALYPNELHG------------------------VSVEEALSSVERLFKAD--- 193 (421)
T ss_pred --------CCCCC--------CCCcEEcCCCccccC------------------------cCHHHHHHHHHHHHHhc---
Confidence 11211 123445566643311 00122346677777531
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++||||+||| ||++|+.++|++||++|+++|++||++||+|||||||||+|++|+++++++.|||+|+||++|||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 273 -~pigav~~~~~i~~~~~~ 290 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAP 290 (421)
T ss_pred -CceEEEEEcHHHHhccCC
Confidence 799999999999998753
No 50
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=100.00 E-value=4e-51 Score=455.13 Aligned_cols=265 Identities=23% Similarity=0.304 Sum_probs=213.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.+++..+|+|+|++
T Consensus 17 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 89 (412)
T TIGR02407 17 FPTVFEKAKGS--TLWDEDGK----EYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE 89 (412)
T ss_pred CCceEEecccC--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence 46678887665 89999999 99999999999999999 9999999999999876654444568999999999999
Q ss_pred cc--CCCCCCeEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 455 ~~--~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
.. |.+...+++| +||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...
T Consensus 90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~als~~~~~~ 150 (412)
T TIGR02407 90 IILKPRGLDYKVQFPGPTGTNAVESALKLA-RKVTGR------------------SNVVSFTNAFHGMTLGSLSVTGNRF 150 (412)
T ss_pred hccCccCCCceEEEeCCCchHHHHHHHHHH-hhhcCC------------------CeEEEECCCcCCchHHHHHhcCCcc
Confidence 74 3222236666 599999999999999 777654 5899999999999999999998654
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. + .++. ++..++|+|+.+. + ...+.+.+++.+++.
T Consensus 151 ~~~~--------~----~~~~----~~~~~~p~~~~~~----------------------~----~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 151 KRQG--------A----GVPL----SNVSRMPYDGYLG----------------------G----DVDTIAYFEKLLEDS 188 (412)
T ss_pred cccC--------C----CCCC----CCeEECCCCCccc----------------------c----chhHHHHHHHHHHhc
Confidence 4332 1 1111 1234445442110 0 012346677777642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
. .+.+++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||++|+++++++.|||+|+||+|
T Consensus 189 ~--~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~l 265 (412)
T TIGR02407 189 S--SGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSI 265 (412)
T ss_pred c--CCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhc
Confidence 1 12368999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccchheeEeCHHHHhhhc
Q 005009 692 TG-GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 gg-G~~Plsavl~~~~i~~~~~ 712 (719)
|| | +|+|++++++++ +.+.
T Consensus 266 g~~G-~pigav~~~~~~-~~~~ 285 (412)
T TIGR02407 266 SGYG-LPLALTLIKPEL-DVWK 285 (412)
T ss_pred cCCc-cceeEEEEchhh-hccC
Confidence 99 8 799999999987 6553
No 51
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=100.00 E-value=6.5e-51 Score=455.21 Aligned_cols=264 Identities=22% Similarity=0.290 Sum_probs=214.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||| +||||++|+|++++||+ ||+|.+|+++|++++.+.....+.+++..+|+++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 21 FPVVFDKAKGS--WLYDEDGK----EYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred CCccEEeeecC--EEEeCCCC----EeeecccchhhccCCCC-CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 36678887765 89999999 99999999999999999 9999999999999876655444568999999999999
Q ss_pred cc--CCCCCCeEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 455 GV--GKGWASRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 455 ~~--~~~~~~rv~f~-~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
.+ |.+...+++|+ ||||||||+|||+| |.|++| .+||+|+++|||+|.+++++|+...
T Consensus 94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~ 154 (425)
T PRK09264 94 TILKPRGLDYKVQFTGPTGTNAVEAALKLA-RKVTGR------------------TNIVAFTNGFHGMTLGSLAVTGNSH 154 (425)
T ss_pred hhcCCcCCCceEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEECCccCCccHHHHHhcCCcc
Confidence 74 32222367664 89999999999999 788654 5899999999999999999998654
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. + .++. ++..++|+|+.+++ + ....+.+++.|++.
T Consensus 155 ~~~~--------~----~~~~----~~~~~~p~~~~~~~------------------------~--~~~~~~l~~~l~~~ 192 (425)
T PRK09264 155 KRQG--------A----GVPL----NNVTRMPYDGYFGG------------------------D--VDTLAYLEKLLEDS 192 (425)
T ss_pred cccC--------C----CCCC----CCeEEeCCCCcccc------------------------c--hhHHHHHHHHHHhc
Confidence 3321 1 1111 13455666542210 0 01245677777642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
. .+.+++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||++|+++++++.|||+|+||+|
T Consensus 193 ~--~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l 269 (425)
T PRK09264 193 S--SGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI 269 (425)
T ss_pred c--CCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEecccc
Confidence 1 12368999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccchheeEeCHHHHhhh
Q 005009 692 TG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 692 gg-G~~Plsavl~~~~i~~~~ 711 (719)
|+ | +|+|++++++++. .+
T Consensus 270 ~~~G-~pigav~~~~~i~-~~ 288 (425)
T PRK09264 270 SGYG-LPMALVLIKPELD-VW 288 (425)
T ss_pred CCCc-cceEEEEEchhhh-cc
Confidence 99 7 8999999999984 44
No 52
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=100.00 E-value=1.1e-50 Score=452.90 Aligned_cols=269 Identities=23% Similarity=0.291 Sum_probs=223.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~ 94 (421)
T PRK09792 22 CNFFAQSAENA--TLKDVEGN----EYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA 94 (421)
T ss_pred CCeeEEecccc--EEEeCCCC----EEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence 35678887775 89999999 99999999999999999 9999999999999988765555679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|....++++|+||||||||+|||+| |.+++| .+||+|+++|||+|.+++++++...
T Consensus 95 ~~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~--- 152 (421)
T PRK09792 95 LAPVSGQAKTAFFTTGAEAVENAVKIA-RAHTGR------------------PGVIAFSGGFHGRTYMTMALTGKVA--- 152 (421)
T ss_pred hCCCCCCceEEEeCChHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCCc---
Confidence 887433579999999999999999999 777654 4899999999999999999987421
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
+|..+++++ .+++.++|+|+.+++ .....+++.+++.+++.
T Consensus 153 ----~~~~~~~~~--------~~~~~~v~~p~~~~~------------------------~~~~~~~~~l~~~~~~~--- 193 (421)
T PRK09792 153 ----PYKIGFGPF--------PGSVYHVPYPSDLHG------------------------ISTQDSLDAIERLFKSD--- 193 (421)
T ss_pred ----ccccCCCCC--------CCCcEEcCCCccccc------------------------ccHHHHHHHHHHHHHhc---
Confidence 122222221 123456666643311 00123456778777631
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..+++|||||+||+ ||.+|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|++|||+|+||+||||
T Consensus 194 ~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G 272 (421)
T PRK09792 194 IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG 272 (421)
T ss_pred cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC
Confidence 13578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 273 -~pigav~~~~~i~~~~~~ 290 (421)
T PRK09792 273 -MPLSGVVGNANIMDAPAP 290 (421)
T ss_pred -CceEEEEEcHHHHhccCC
Confidence 799999999999998753
No 53
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-50 Score=439.03 Aligned_cols=281 Identities=22% Similarity=0.313 Sum_probs=228.9
Q ss_pred hcccchhhCCCc----cccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHH
Q 005009 350 LCDMPKRAGELF----WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (719)
Q Consensus 350 l~~L~e~~~~~~----~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av 425 (719)
++.+.+++.+.+ +.|....+.++ ..|.++++++|. |+||+||| +|||++.+|+...|||+ ||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~g~Ga--~l~DvDGn----~YIDy~~~~Gp~ilGH~-~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIERGKGA--YLTDVDGN----EYIDYVLGWGPLILGHA-HPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEeccCC--eEEeCCCC----EeeehhccCcccccCCC-CHHHHHHH
Confidence 344555555554 44555555443 478999998887 79999999 99999999999999999 99999999
Q ss_pred HHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCc
Q 005009 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (719)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~ 505 (719)
++|+++.... +..++...++||.|++..|. .++|.|+|||+||+..|||+| |.||+|
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~TgR----------------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAYTGR----------------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHhhCC-----------------
Confidence 9999996543 35789999999999999985 689999999999999999999 899876
Q ss_pred ceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccc
Q 005009 506 ELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585 (719)
Q Consensus 506 r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~ 585 (719)
.|||.|+|+|||+....+--.++..-. +..|.. ...|......+. -++|||.
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t--------------~g~p~s--------~Gvp~~~a~~ti---~~~yND~-- 187 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAAT--------------LGSPSS--------PGVPADVAKHTL---VLPYNDL-- 187 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCccc--------------CCCCCC--------CCCChhhhccEE---EecCCCH--
Confidence 499999999999988776644311100 000110 011222211111 2468984
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC
Q 005009 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (719)
Q Consensus 586 ~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG 665 (719)
+.+++++++ .+++|||||+||| +|..|+++|.++|+++||+||++||++||+|||+||
T Consensus 188 ----------------~al~~~~~~-----~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG 245 (432)
T COG0001 188 ----------------EALEEAFEE-----YGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245 (432)
T ss_pred ----------------HHHHHHHHH-----cCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence 678888884 5789999999998 999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 666 fGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
| |.+...++++|||+||+.||||.|||| +|+||+.++++||+.+..
T Consensus 246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p 291 (432)
T COG0001 246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAP 291 (432)
T ss_pred c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCC
Confidence 9 999999999999999999999999999 799999999999997754
No 54
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=100.00 E-value=2.6e-50 Score=454.27 Aligned_cols=254 Identities=21% Similarity=0.288 Sum_probs=208.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|.+|+++|+++..+. ...++...+|||+|++
T Consensus 81 ~p~~~~~a~G~--~l~D~dG~----~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~ 150 (474)
T PLN02482 81 QPIVFDRVKGS--YAWDVDGN----EYIDYVGSWGPAIIGHA-DDEVLAALAETMKKGTSF---GAPCLLENVLAEMVID 150 (474)
T ss_pred CCeeEEEeeeC--EEEECCCC----EEEEecccccccccCCC-CHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHH
Confidence 47888887776 89999999 99999999999999999 999999999999987653 3568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc--cCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY 532 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl--t~~~~~ 532 (719)
.+|. +++|+|+||||||||.|||+| |+|++| .+||+|+++|||++...+.. ++...+
T Consensus 151 ~~p~--~~~v~f~~SGsEA~e~AlklA-R~~tgr------------------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~ 209 (474)
T PLN02482 151 AVPS--VEMVRFVNSGTEACMGVLRLA-RAYTGR------------------EKIIKFEGCYHGHADSFLVKAGSGVATL 209 (474)
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHhcCC------------------CEEEEECCccCCCcchhhhhcCCCcccc
Confidence 9874 689999999999999999999 888765 48999999999987554333 321111
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
.. ++. + +......++.+. ++|||. +.+++.|++
T Consensus 210 ~~----~~~---------~------g~~~~~~~~~~~--------~~~nd~------------------~~l~~~l~~-- 242 (474)
T PLN02482 210 GL----PDS---------P------GVPKAATSATLT--------APYNDL------------------EAVKKLFEA-- 242 (474)
T ss_pred CC----CCC---------C------CCCCCCCCCeEE--------ecCCCh------------------HHHHHHHHh--
Confidence 00 110 0 000000111110 235653 456777763
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
+++++||||+||| ||++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|++|||+||||+||
T Consensus 243 ---~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lg 317 (474)
T PLN02482 243 ---NKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317 (474)
T ss_pred ---CCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhh
Confidence 4678999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
|| +|+|++++++++++.+.
T Consensus 318 gG-~Pigav~g~~ei~~~~~ 336 (474)
T PLN02482 318 GG-LPVGAYGGRREIMEMVA 336 (474)
T ss_pred CC-CceEEEEEcHHHHHhhc
Confidence 99 79999999999999885
No 55
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=2.6e-50 Score=450.41 Aligned_cols=256 Identities=23% Similarity=0.342 Sum_probs=210.6
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. ||||.||| +|||+++|+|++++||+ ||+|++|+++|+++.... .+.+++..+|+++|+
T Consensus 34 ~~p~~i~~a~G~--~l~D~dG~----~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~ 103 (433)
T PRK00615 34 ITPPIVSSASGD--IFIDSLGK----TFIDFCGSWGSLIHGHS-HPKICDAIQQGAERGTSY---GLTSEQEILFAEELF 103 (433)
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Confidence 357788887776 89999999 99999999999999999 999999999999986532 356899999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc---cccccccCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPS 530 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t---~galslt~~~ 530 (719)
+.+|.+ .++|+|+||||||||+|||+| |.|++| .+||+|+++|||+| .+++++++..
T Consensus 104 ~~~~~~-~~~v~f~~SGsEA~e~AiklA-r~~tgr------------------~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 104 SYLGLE-DHKIRFVSSGTEATMTAVRLA-RGITGR------------------SIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred HhCCCC-cCEEEEeCchHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCCcccCcccccCCCC
Confidence 988754 479999999999999999999 888765 48999999999998 7777776532
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
..... .. +.++. +..++. .++||| .+.+++.|++
T Consensus 164 ~~~~~------~~----~~~~~------------~~~~~~------~~~~~d------------------~~~l~~~l~~ 197 (433)
T PRK00615 164 LDTLT------HL----VDTDL------------AHPLTL------SLPYND------------------FQIFQTVMNS 197 (433)
T ss_pred cCcCC------CC----CCCCC------------CCCCeE------eCCCCC------------------HHHHHHHHHh
Confidence 11100 00 00000 000000 012444 2456777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhc
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~ 690 (719)
.++++||||+||| ||++|+++|+++||++|+++|++||++||+||||||| |||.+|+++++|++|||+|+||+
T Consensus 198 -----~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~ 270 (433)
T PRK00615 198 -----LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKI 270 (433)
T ss_pred -----cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccc
Confidence 2478999999998 9999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCccchheeEeCHHHHhhhcC
Q 005009 691 LTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 691 LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|||| +|+|++++++++++.+..
T Consensus 271 lggG-~p~~av~~~~~i~~~~~~ 292 (433)
T PRK00615 271 LGGG-LPAAAVVAHKSIMDHLAP 292 (433)
T ss_pred ccCC-cceeeeeecHHHHhhhcC
Confidence 9999 799999999999998853
No 56
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=8.9e-50 Score=447.81 Aligned_cols=273 Identities=22% Similarity=0.266 Sum_probs=226.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+...+.+++..+||++|++
T Consensus 23 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 95 (443)
T PRK08360 23 YPLVPVKAENA--KVWDIEGN----EYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE 95 (443)
T ss_pred CCceEEeccee--EEEECCCC----EEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36788876664 89999999 99999999999999999 9999999999999988776544568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
.+|.+ +++|+|+||||||||+|||+| |.|++| .+||++.++|||+|.+++++++.. .++
T Consensus 96 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 155 (443)
T PRK08360 96 IAPGD-NPKVSFGLSGSDANDGAIKFA-RAYTKR------------------RKILSYLRSYYGSTYGAMSLTGLDFPVR 155 (443)
T ss_pred hCCCC-CCEEEEcCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEeCCcCCcCHHHHHhcCCCcccc
Confidence 98754 579999999999999999999 788754 489999999999999999998732 122
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. .+ .+ .++..++++|+.++.. +.. +..++...+.+++++.+++.
T Consensus 156 ~--------~~----~~-----~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~l~~~-- 199 (443)
T PRK08360 156 A--------LV----GE-----LSDVHYIPYPDCYRCP--------FGK---------EPGSCKMECVEYIKEKFEGE-- 199 (443)
T ss_pred c--------CC----CC-----CCCcEEEeCCcccccc--------ccC---------chhhhHHHHHHHHHHHHHhc--
Confidence 1 11 11 1234567777655421 110 11233334566777777631
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..+++|||||+||+ ||.+|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||++|+
T Consensus 200 -~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~ 277 (443)
T PRK08360 200 -VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGG 277 (443)
T ss_pred -cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccC
Confidence 23578999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 278 G-~pigav~~~~~i~~~~~~ 296 (443)
T PRK08360 278 G-LPISATIGRAEIMDSLPP 296 (443)
T ss_pred C-ceeEEEEEcHHHHhhhcC
Confidence 9 799999999999998853
No 57
>PRK08297 L-lysine aminotransferase; Provisional
Probab=100.00 E-value=6.4e-50 Score=448.96 Aligned_cols=270 Identities=19% Similarity=0.248 Sum_probs=205.8
Q ss_pred EEeecCCceEEEeC-CCCcccceeeeccccccccCCCCCCCHHHHH--HHHHhhhhccc--ccCCCCCChHHHHHHHHHH
Q 005009 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELLL 453 (719)
Q Consensus 379 i~~~~G~g~~l~D~-dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~--Av~~q~~~~~~--~~~~~~~~~~~~~Lae~L~ 453 (719)
+.+++| +|+||. ||| +|||+++|+|++++||+ ||+|++ |+++|++++.+ .....+.+++..+|+++|+
T Consensus 30 i~~a~G--~~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~ 102 (443)
T PRK08297 30 LERSQG--SYLVDARTGR----RYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFA 102 (443)
T ss_pred EEeccC--CEEEECCCCC----EeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHH
Confidence 555555 589995 999 99999999999999999 999999 99999998763 2223467899999999999
Q ss_pred hcc-CCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccCcceEEEEEeCCcccCccccccccC
Q 005009 454 QGV-GKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (719)
Q Consensus 454 ~~~-~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~----~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~ 528 (719)
+.. |.+ +++|+|+||||||||+|||+| |+|+.+ +|. ..++|.+||+|+++|||+|.+++++++
T Consensus 103 ~~~~p~~-~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~----------~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 103 RVLGDPE-LPHLFFVDGGALAVENALKVA-FDWKSRKNEARGI----------DPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred hhcCCCC-CCEEEEeCchHHHHHHHHHHH-HHHhhccccccCC----------CCCCCceEEEECCCcCCcchhhhhhcC
Confidence 987 433 789999999999999999999 777632 121 002478999999999999999999997
Q ss_pred CCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHH
Q 005009 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (719)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l 608 (719)
...++.. ++ +..+. .+++.|... . ++.+.+ ..+...+...+++.+++.|
T Consensus 171 ~~~~~~~----~~----~~~~~---------~~~~~~~~~-~--------~~~~~~-----~~~~~~~~~~~~~~~~~~i 219 (443)
T PRK08297 171 TDPRKTA----RF----PKFDW---------PRIDNPKLR-F--------PLPGED-----LEEVEALEAEALAQARAAF 219 (443)
T ss_pred Ccccccc----cC----CCCCc---------cccCCCCCC-C--------CCcccc-----cchhhHHHHHHHHHHHHHH
Confidence 5332211 00 00000 112222110 0 000000 0001223334567788888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh
Q 005009 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG 688 (719)
Q Consensus 609 ~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg 688 (719)
++ ++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+|
T Consensus 220 ~~-----~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g 293 (443)
T PRK08297 220 ER-----HPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG 293 (443)
T ss_pred Hh-----CCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEec
Confidence 73 4689999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccchheeEeCHHHHh
Q 005009 689 KLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 689 K~LggG~~Plsavl~~~~i~~ 709 (719)
|+| |++++++++++++
T Consensus 294 K~l-----~~~a~l~~~~i~~ 309 (443)
T PRK08297 294 KKT-----QVCGIMAGRRVDE 309 (443)
T ss_pred ccc-----cccceecchHHHH
Confidence 997 4556777777654
No 58
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=7.9e-50 Score=448.33 Aligned_cols=271 Identities=19% Similarity=0.241 Sum_probs=203.3
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHh--hhhcccccCCCCCChHHHHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q--~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
|+++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++| ...+.+.. .+.+++..+|+++|.
T Consensus 41 p~~~~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l~ 111 (464)
T TIGR00699 41 LADYEKSRGN--YLVDVDGN----RLLDLYSQISSIPIGYN-NPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKILK 111 (464)
T ss_pred ceEEEecccC--EEEeCCCC----EEEEccCCHhhhcCCCC-CHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHHH
Confidence 6677777665 89999999 99999999999999999 99999999995 44444432 467888999999985
Q ss_pred h----ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccc--cccCCC-------ccccCcceEEEEEeCCcccCc
Q 005009 454 Q----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV--DFLGKD-------TTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 454 ~----~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~--~~~~~~-------~~~~~~r~kII~~~~syHG~t 520 (719)
+ .+|.+ +++|+|+||||||||+|||+| |.|++.+|... .+.+++ ++++..|.+||+|+++|||+|
T Consensus 112 ~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t 189 (464)
T TIGR00699 112 EGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRL 189 (464)
T ss_pred HhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCcc
Confidence 4 66644 689999999999999999999 77765322100 000000 011123569999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.+++++++...++.. + +|. .+..++|+|+ ++++. ... ..+...+...+
T Consensus 190 ~~als~t~~~~~~~~---------~----~~~----~~~~~~p~p~-~~~~~--------~~~------~~~~~~~~~~~ 237 (464)
T TIGR00699 190 FGSLSTTRSKPIHKL---------D----IPA----FDWPQAPFPS-LKYPL--------EEH------VKENAKEEQRC 237 (464)
T ss_pred HHHHHhcCCcccccc---------C----CCC----CCceecCCCC-ccccc--------ccc------cccchhHHHHH
Confidence 999999975432221 0 111 1224555554 22110 000 00112234456
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
++.++++|++ .+++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+||+++++||
T Consensus 238 l~~l~~~l~~-----~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv 311 (464)
T TIGR00699 238 LEEVEDLIKK-----WHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311 (464)
T ss_pred HHHHHHHHHh-----cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCC
Confidence 7788888873 3568999999998 999999999999999999999999999999999999999999999999999
Q ss_pred C--cceeeehhccC-CCc
Q 005009 681 V--PDIACYGKLLT-GGV 695 (719)
Q Consensus 681 ~--PDIvtlgK~Lg-gG~ 695 (719)
+ |||+|+||+|| |||
T Consensus 312 ~~~PDi~t~gK~lg~gG~ 329 (464)
T TIGR00699 312 DDPPDMVTFSKKFQTAGY 329 (464)
T ss_pred CCCCCEEEehhhhccCCc
Confidence 7 99999999995 685
No 59
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=100.00 E-value=7e-50 Score=437.67 Aligned_cols=244 Identities=23% Similarity=0.265 Sum_probs=207.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. |+||.||| +|||+++|+|+.++||+ ||+|++|+++|++++.+.. ..+.+++..+|+++|+
T Consensus 5 ~~~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~la~~l~ 76 (364)
T PRK04013 5 RKRLRLVRGEGI--YVWDSQGR----RYLDLIAGIGVNVLGHN-HPEWVEEMSEQLEKLVVAG-PMFEHEEKEEMLEELS 76 (364)
T ss_pred CCCccEEEeecC--EEEECCCC----EEEEcccChhhccCCCC-CHHHHHHHHHHHHhcCCcc-CCcCCHHHHHHHHHHH
Confidence 456778887776 89999999 99999999999999999 9999999999999987654 3577999999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+ .++++|+||||||||+|||+| |.+++| .+||+++++|||+|.+++++++.+.++
T Consensus 77 ~~~~---~~~v~~~~SGseA~e~Alkla-r~~~gr------------------~~Ii~~~~syHG~t~~~ls~~~~~~~~ 134 (364)
T PRK04013 77 KWVN---YEYVYMGNSGTEAVEAALKFA-RLYTGR------------------KEIIAMTNAFHGRTMGALSATWKPKYR 134 (364)
T ss_pred hhcC---CCEEEEeCchHHHHHHHHHHH-HHHhCC------------------CEEEEECCccccCchhhccCCCCcccc
Confidence 9875 579999999999999999999 777654 489999999999999999999865444
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+.+ +++.++| |+|. +.+++.+.
T Consensus 135 ~~--------~~p~~--------~~~~~~~----------------~~d~------------------~~l~~~i~---- 160 (364)
T PRK04013 135 ED--------FEPLV--------PGFKHIP----------------FNDV------------------EAAKEAIT---- 160 (364)
T ss_pred cC--------CCCCC--------CCcEEec----------------CCCH------------------HHHHHHhc----
Confidence 32 11110 1122222 3431 33555553
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++||||+||+ ||+||++++|++||++|+++|++||++||+||||||| |||++|+++++|++|||+|+||+|||
T Consensus 161 ----~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lgg 234 (364)
T PRK04013 161 ----KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGN 234 (364)
T ss_pred ----CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccC
Confidence 47999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHH
Q 005009 694 GVIPLAATLATNAVF 708 (719)
Q Consensus 694 G~~Plsavl~~~~i~ 708 (719)
| +|+||++.++++.
T Consensus 235 G-~P~~a~~~~~~~~ 248 (364)
T PRK04013 235 G-VPVSLTLTNFDVE 248 (364)
T ss_pred C-ceeEEEEeccccc
Confidence 9 7999999998863
No 60
>PRK07046 aminotransferase; Validated
Probab=100.00 E-value=1.7e-49 Score=446.28 Aligned_cols=292 Identities=18% Similarity=0.154 Sum_probs=229.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcccchhhCCCcccc--CCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeecccccc
Q 005009 332 FDSLKNIMLLAYSERIQRLCDMPKRAGELFWWP--FTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW 409 (719)
Q Consensus 332 v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p--~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~ 409 (719)
+...+..+..+|..+..++..+.+++++.+..- ++....++...|.++++++|. |+||.||| +|||+++|+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~--~v~D~DG~----~yiD~~~g~g 85 (453)
T PRK07046 12 AAALLARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGA--RFTDVDGH----RYDDFCLGDT 85 (453)
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeC--EEEeCCCC----EEEEeccccc
Confidence 344455566677777778888888888877553 333223333468888887776 79999999 9999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
+.++||+ ||+|++|+++|+++..+. ...++...+|||+|++..+ .++|+|+||||||||.|||+| |.||+|
T Consensus 86 ~~~lGh~-~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~TGr- 156 (453)
T PRK07046 86 GAMFGHS-PAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAVTGR- 156 (453)
T ss_pred ccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHhhCC-
Confidence 9999999 999999999999986543 3578999999999999885 689999999999999999999 888765
Q ss_pred cccccccCCCccccCcceEEEEEeCCcccCcccccccc--CCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
.+||.|+|+|||++.+++... +...++. . +...|.. ..+....
T Consensus 157 -----------------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~-----~------~~g~~~~-~~~~~~~------ 201 (453)
T PRK07046 157 -----------------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP-----G------LLGQVHD-LTATTRV------ 201 (453)
T ss_pred -----------------CEEEEECCCCCCCcHHhHhhccCCCCCCCC-----C------CCCCCcc-ccCceEe------
Confidence 489999999999987766432 2111110 0 0000000 0001111
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
++|||. +.+++.+. +++|||||+||| ||++|+++|+++||++||
T Consensus 202 ----------~~~nd~------------------~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr 245 (453)
T PRK07046 202 ----------VEFNDL------------------AALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALR 245 (453)
T ss_pred ----------eCCCCH------------------HHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHH
Confidence 235652 45666663 368999999998 999999999999999999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|++||++||+||||| | |+|...+.+++||+|||+|+||+|||| +|+||+++++++++.+.
T Consensus 246 ~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~ 307 (453)
T PRK07046 246 ELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQ 307 (453)
T ss_pred HHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHh
Confidence 99999999999999999 5 577666778899999999999999999 79999999999999885
No 61
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=1.9e-49 Score=439.47 Aligned_cols=250 Identities=24% Similarity=0.300 Sum_probs=209.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||+||+|++++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|.+
T Consensus 18 ~~~~~~~~~G~--~~~d~dG~----~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~ 89 (395)
T PRK03715 18 PDIVFTHGKGS--WLYDHNGK----RYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQ 89 (395)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCcChhhccCCCC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhh
Confidence 45678887776 79999999 99999999999999999 99999999999999877653 4568999999999998
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++|||||||+|||+| |.|+++. . ++|.+||+++++|||+|.+++++++...++.
T Consensus 90 ~~~---~~~v~f~~SGseA~e~Aik~a-r~~~~~~-~------------~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 152 (395)
T PRK03715 90 HSC---FDKVFFANSGAEANEGAIKLA-RKWGRKH-K------------NGAYEIITFDHSFHGRTLATMSASGKPGWDT 152 (395)
T ss_pred ccC---CCEEEEeCCcHHHHHHHHHHH-HHHhhcc-C------------CCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence 754 579999999999999999999 6775432 1 4578999999999999999999998654432
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. ++..+. +|+| .+.+++.+.
T Consensus 153 ~--------~~~~~--------~~~~~~----------------~~~d------------------~~~l~~~l~----- 177 (395)
T PRK03715 153 I--------FAPQV--------PGFPKA----------------ELND------------------IASVEKLIT----- 177 (395)
T ss_pred C--------CCCCC--------CCceee----------------CCch------------------HHHHHHHcC-----
Confidence 1 11100 011111 1333 245565553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++|||+||+ ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 178 ---~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G 253 (395)
T PRK03715 178 ---DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG 253 (395)
T ss_pred ---CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHh
Q 005009 695 VIPLAATLATNAVFD 709 (719)
Q Consensus 695 ~~Plsavl~~~~i~~ 709 (719)
+|+|+++++++++.
T Consensus 254 -~p~~av~~~~~i~~ 267 (395)
T PRK03715 254 -VPLAALLAKAEVAV 267 (395)
T ss_pred -cceEEEEEcccccc
Confidence 79999999999974
No 62
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=3.6e-49 Score=438.72 Aligned_cols=258 Identities=24% Similarity=0.350 Sum_probs=216.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+... .+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~ 93 (408)
T PRK04612 22 RQVVLERGQGS--RVWDDQGR----EYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVT 93 (408)
T ss_pred CCceEEEeeeC--EEEECCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 46678887775 89999999 99999999999999999 99999999999999877642 4678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..|. .++|+|++|||||||+|||+| |+|++++|. .++|.+||+|+++|||+|.+++++++.+.++.
T Consensus 94 ~~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-----------~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 94 ASRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGR-----------PADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred hCCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCC-----------CCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 8764 479999999999999999999 788754432 13577899999999999999999998654443
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+. | ++..+++ |+|. +.+++.+.
T Consensus 160 ~--------~~~~---~-----~~~~~~~----------------~~d~------------------~~l~~~~~----- 184 (408)
T PRK04612 160 G--------YEPL---P-----GGFRYVD----------------FNDV------------------EALEAAMA----- 184 (408)
T ss_pred C--------CCCC---C-----CCceEcC----------------CCCH------------------HHHHHhhC-----
Confidence 2 1110 0 1112222 3331 44555553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++||||+||+ |++||++.+|++|+++|+++|++||++||+|||||||||+|++|+++++++.|||+|+||+||||
T Consensus 185 --~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G 261 (408)
T PRK04612 185 --GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG 261 (408)
T ss_pred --CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC
Confidence 368999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 262 -~piga~~~~~~~~~~~~~ 279 (408)
T PRK04612 262 -FPIGAMLAGPKVAETMQF 279 (408)
T ss_pred -CceEEEEECHHHHhhhcC
Confidence 799999999999988754
No 63
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=7.9e-49 Score=434.71 Aligned_cols=255 Identities=26% Similarity=0.350 Sum_probs=215.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||+||+|+++|||+ ||+|++|+++|++++.+.. ..+.+++..+|+++|++
T Consensus 17 ~~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~L~~ 88 (397)
T TIGR03246 17 APFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIG-NGYTNEPVLRLAKKLVD 88 (397)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHh
Confidence 36688887776 89999999 99999999999999999 9999999999999865543 24578999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|+||||||||+|||+| |.|+.+++. ++|.+||+++++|||+|.+++++++...++.
T Consensus 89 ~~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~ 152 (397)
T TIGR03246 89 ATF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG------------ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ 152 (397)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 876 479999999999999999999 788755422 4678999999999999999999987544433
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.++ + ++..++ +|||. +.+++.+.
T Consensus 153 ~--------~~~~--~------~~~~~~----------------~~~d~------------------~~l~~~l~----- 177 (397)
T TIGR03246 153 G--------FAPL--P------GGIKHA----------------PYNDL------------------AAAKALIS----- 177 (397)
T ss_pred C--------CCCC--C------CceEEe----------------CCCCH------------------HHHHHHhc-----
Confidence 2 1111 0 122222 24442 45666663
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++|||+||+ |++||+++||++||++|+++|++||++||+|||||||||||++|+++++|+.|||+|+||+||||
T Consensus 178 ---~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG 253 (397)
T TIGR03246 178 ---DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG 253 (397)
T ss_pred ---cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.|..
T Consensus 254 -~pigav~~~~~i~~~~~~ 271 (397)
T TIGR03246 254 -FPIGAMLTTTEIAAHLKV 271 (397)
T ss_pred -cceeEEEEcHHHHHhccC
Confidence 799999999999998854
No 64
>PLN00144 acetylornithine transaminase
Probab=100.00 E-value=6.2e-49 Score=433.59 Aligned_cols=256 Identities=24% Similarity=0.340 Sum_probs=211.7
Q ss_pred CCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCe
Q 005009 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (719)
Q Consensus 384 G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~r 463 (719)
|.|+|+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|++..+ .++
T Consensus 4 ~~G~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~~ 74 (382)
T PLN00144 4 GKGCKLYDVEGK----EYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF---ADR 74 (382)
T ss_pred eeccEEEeCCCC----EEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC---CCe
Confidence 444589999999 99999999999999999 99999999999999877653 3568999999999999875 579
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
|+|++|||||||+|||+| |.|++++|.. ++..+..+|.+||+|+++|||+|.+++++++...++.. +
T Consensus 75 v~f~~sGseA~e~AlklA-r~~~~~~~~~-----~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~----~--- 141 (382)
T PLN00144 75 VFFCNSGTEANEAAIKFA-RKYQRVRAPD-----KKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTP----F--- 141 (382)
T ss_pred EEEeCCcHHHHHHHHHHH-HHHHhccCCC-----CccccccccceEEEECCCcccccHHHHhcCCCcccccc----C---
Confidence 999999999999999999 8888765430 00000122689999999999999999999986544432 1
Q ss_pred CCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv 623 (719)
.+. . ++..+++ |||. +.+++.+. .++++||
T Consensus 142 -~~~--~------~~~~~~~----------------~~d~------------------~~l~~~~~-------~~~~aav 171 (382)
T PLN00144 142 -EPL--M------PGVTFVE----------------YGNL------------------EAARKLIQ-------KGKTAAV 171 (382)
T ss_pred -CCC--C------CCeEEeC----------------CCCH------------------HHHHHhcC-------CCCeEEE
Confidence 110 0 1122222 4442 45665553 3589999
Q ss_pred EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEe
Q 005009 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 624 IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~ 703 (719)
|+||+ ||.||+..++.+|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|++++
T Consensus 172 i~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~~ 249 (382)
T PLN00144 172 FVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLV 249 (382)
T ss_pred EEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceEEEEE
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred CHHHHhhhcC
Q 005009 704 TNAVFDSFVG 713 (719)
Q Consensus 704 ~~~i~~~~~~ 713 (719)
++++++.|..
T Consensus 250 ~~~~~~~~~~ 259 (382)
T PLN00144 250 TEKVASAINP 259 (382)
T ss_pred cHHHHhccCC
Confidence 9999998853
No 65
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=100.00 E-value=1.1e-48 Score=437.97 Aligned_cols=277 Identities=18% Similarity=0.195 Sum_probs=208.8
Q ss_pred CeEEEEeecCCceEEEeC-CCCcccceeeeccccccccCCCCCCCHHHH--HHHHHhhhhcccc--cCCCCCChHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECA 449 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~-dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~--~Av~~q~~~~~~~--~~~~~~~~~~~~La 449 (719)
.|.+++-.+|.|+|+||. ||| +||||++|+|++++||+ ||+|+ +|+++|++++.+. +...+.+++..+++
T Consensus 17 ~p~~~~~~~a~G~~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~ 91 (431)
T TIGR03251 17 FDLVLDLDRSRGSVLVDARDGR----RYLDMFSFFASMALGMN-HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFV 91 (431)
T ss_pred CceeeEEEeccCCEEEECCCCC----ChhhcccChhhcCCCCC-ChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHH
Confidence 355543333455589996 999 99999999999999999 99999 9999999987532 22346788999999
Q ss_pred HHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccCcceEEEEEeCCcccCcccccc
Q 005009 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (719)
Q Consensus 450 e~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~----~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals 525 (719)
++|++.++.+.+++|+|+||||||||+|||+| |+|+++ +|. +.++|.+||+|+++|||+|.++++
T Consensus 92 ~~l~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~----------~~~~~~~ii~~~~~yHG~t~~als 160 (431)
T TIGR03251 92 DTFARVLGDPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGI----------PAALGTQVLHLRQAFHGRSGYTLS 160 (431)
T ss_pred HHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCC----------CCCCCceEEEECCccCCcchhhhh
Confidence 99999863233789999999999999999999 788754 232 002367899999999999999999
Q ss_pred ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH
Q 005009 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (719)
Q Consensus 526 lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le 605 (719)
+++...++.. +.+.++. .+++.|+.. + +++..+ ..+...+...+++.++
T Consensus 161 ~~~~~~~~~~--------~~~~~~~---------~~~~~p~~~-~--------~~~~~~-----~~~~~~~~~~~l~~~~ 209 (431)
T TIGR03251 161 LTNTDPRKTA--------RFPKFDW---------PRIDNPKLT-F--------PLDAPN-----LDQVIALEEEALRQAR 209 (431)
T ss_pred ccCCcccccc--------CCCCCCC---------ccCCCCccc-C--------Cccccc-----cchhhHHHHHHHHHHH
Confidence 9985433321 1111100 112222211 0 011000 0001123334567788
Q ss_pred HHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee
Q 005009 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (719)
Q Consensus 606 ~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv 685 (719)
+.+++ .+++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+
T Consensus 210 ~~~~~-----~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 210 AAFAE-----RPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred HHHHh-----CCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEE
Confidence 88863 4689999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred eehhccCCCccchheeEeCHHHHh
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
|+||++ |++++++.+++.+
T Consensus 284 ~~gK~~-----~~~g~~~~~~i~~ 302 (431)
T TIGR03251 284 AFGKKT-----QVCGIMAGRRVDE 302 (431)
T ss_pred EecccC-----ccceEEecchHHH
Confidence 999996 6667777776543
No 66
>PRK06149 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-49 Score=476.71 Aligned_cols=270 Identities=19% Similarity=0.188 Sum_probs=216.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+. ++||+ ||+|++|+++|++++.+.+ .+.++...+|+++|++
T Consensus 567 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~~~~--~lGh~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~ 635 (972)
T PRK06149 567 DPPQIERGWRH--HLFDMAGR----SYLDMVNNVT--VLGHG-HPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAA 635 (972)
T ss_pred CCCeEEEeeee--EEEeCCCC----EEEECCCCcc--ccCCC-CHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHH
Confidence 35678887775 89999999 9999999863 79999 9999999999999876543 3568899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+ +++|+|+||||||||+|||+| |.|++| .+||+++++|||+|.+++++++....+.
T Consensus 636 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~ga~~~s~~~~~~~ 695 (972)
T PRK06149 636 LAPDG-LDTVFLVNSGSEANDLAIRLA-WAASGR------------------RDVVSVLEAYHGWTVATDAVSTSIADNP 695 (972)
T ss_pred hCCCC-cCEEEEeCCchHHHHHHHHHH-HHhcCC------------------CeEEEEeCCCCCcChhHhhhcCCccccc
Confidence 98754 689999999999999999999 788754 4899999999999999999876422111
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
.++.. ..+++..++.|+.|+++ |++. +....|.+.+++.++...
T Consensus 696 ----~~~~~-----------~~~~v~~~~~p~~~~~~--------~~~~-----------~~~~~~~~~~~~~l~~~~-- 739 (972)
T PRK06149 696 ----QALET-----------RPDWVHPVESPNTYRGR--------FRGA-----------DSAADYVRDVVAQLEELD-- 739 (972)
T ss_pred ----cccCC-----------CCCCeEEeCCCcccCCc--------CCCc-----------ccHHHHHHHHHHHHHHHh--
Confidence 01000 01234456667666432 3221 011223344444443211
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeehhccCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 740 ~~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~ 818 (972)
T PRK06149 740 ASGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGN 818 (972)
T ss_pred hcCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccC
Confidence 24678999999998 999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|||++++++++.|..
T Consensus 819 G-~Pl~av~~~~~i~~~~~~ 837 (972)
T PRK06149 819 G-HPLGAVITRREIAEALEA 837 (972)
T ss_pred C-eeeEEEEEcHHHHhhhcc
Confidence 9 799999999999998864
No 67
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=100.00 E-value=1.5e-47 Score=425.71 Aligned_cols=255 Identities=26% Similarity=0.335 Sum_probs=214.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.+.. ..+.+++..+|+++|++
T Consensus 21 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 92 (406)
T PRK12381 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLID 92 (406)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhccccc-CccCCHHHHHHHHHHHh
Confidence 35678887776 89999999 99999999999999999 9999999999999876654 34678899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+.+ .++|+|++||+||||+|+|+| |.|+.+++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 93 ~~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 93 ATF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred hCC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 875 479999999999999999999 777654332 4578999999999999999999998654432
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+. + ++..++ +|||. +.+++.+.
T Consensus 157 ~--------~~~~--~------~~~~~~----------------~~~d~------------------~~l~~~l~----- 181 (406)
T PRK12381 157 D--------FAPL--P------PDIRHA----------------AYNDL------------------NSASALID----- 181 (406)
T ss_pred C--------CCCC--C------CCeeEe----------------CCCCH------------------HHHHHhcc-----
Confidence 1 1111 0 111111 24442 44565553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++|||+||+ ||+||++++|++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||+||||
T Consensus 182 ---~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG 257 (406)
T PRK12381 182 ---DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG 257 (406)
T ss_pred ---CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 258 -~~ig~~~~~~~~~~~~~~ 275 (406)
T PRK12381 258 -FPIGAMLTTEKCASVMTV 275 (406)
T ss_pred -CceEEEEEcHHHHhhcCC
Confidence 799999999999998854
No 68
>PLN02624 ornithine-delta-aminotransferase
Probab=100.00 E-value=1.4e-46 Score=425.46 Aligned_cols=258 Identities=22% Similarity=0.338 Sum_probs=216.5
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +||||+||+++.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|+++
T Consensus 58 p~~~~~a~G~--~l~d~dG~----~ylD~~sg~~~~~~Gh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~ 129 (474)
T PLN02624 58 PVVFSRAKGS--RIWDPEGK----KYLDFLSAYSAVNQGHC-HPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSM 129 (474)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhh
Confidence 6688887776 79999999 99999999999999999 99999999999999887653 46799999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~-~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+| .++++|+|||+||||+|||+| |.|+. ++|. ..+|.+||++.++|||+|.+++++++...++.
T Consensus 130 ~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~-----------~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 194 (474)
T PLN02624 130 FG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGI-----------PKNEAIIVSCCGCFHGRTLAAISMSCDNEATR 194 (474)
T ss_pred cC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCC-----------CCCCcEEEEECCCcCCCCHHHhhcCCCccccc
Confidence 86 579999999999999999999 66642 2221 02467899999999999999999987543322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++++.. | +..++ +|+|. +.+++.++.
T Consensus 195 --------~~~~~~--~------~~~~~----------------~~~d~------------------~~l~~~l~~---- 220 (474)
T PLN02624 195 --------GFGPLL--P------GHLKV----------------DFGDL------------------DALEKIFEE---- 220 (474)
T ss_pred --------cCCCCC--C------CceEe----------------CCCCH------------------HHHHHHHHh----
Confidence 111111 1 11122 24442 456677753
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++||||+||+ ||++|++.|+++||++|+++|++||++||+|||||||||+|++|+++++++.|||+|+||++|||
T Consensus 221 -~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG 298 (474)
T PLN02624 221 -DGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGG 298 (474)
T ss_pred -CCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCC
Confidence 3578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
++|+|++++++++++.+.
T Consensus 299 ~~pigav~~~~~i~~~~~ 316 (474)
T PLN02624 299 VIPVSAVLADKDVMLCIK 316 (474)
T ss_pred CCcceeeeecHHHHhHhc
Confidence 899999999999988774
No 69
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=100.00 E-value=3.2e-44 Score=397.50 Aligned_cols=257 Identities=20% Similarity=0.301 Sum_probs=212.9
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|++
T Consensus 22 ~p~~~~~~~G~--~l~d~~G~----~~lD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (396)
T PRK04073 22 LPIVISEAEGV--WVKDPEGN----RYMDMLSAYSAVNQGHR-HPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAK 93 (396)
T ss_pred CCceEEeeeec--EEEECCCC----EEEEcCCCHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHh
Confidence 36678887665 89999999 99999999999999999 99999999999999887653 4578899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~-~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.| .++++|++||+||||+|||+| |.|+.. +|. .++|.+||+++++|||+|.+++++++.+.++
T Consensus 94 ~~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~-----------~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~ 158 (396)
T PRK04073 94 LTG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGV-----------EPNKAEIIACEGNFHGRTMAAVSLSSEEEYK 158 (396)
T ss_pred cCC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCC-----------CCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence 876 479999999999999999999 666421 121 1456799999999999999999999754333
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+.+ ++..+++ |+|. +.+++.+.
T Consensus 159 ~~--------~~~~~--------~~~~~~~----------------~~d~------------------~~l~~~i~---- 184 (396)
T PRK04073 159 RG--------FGPML--------PGIKKIP----------------YGDL------------------EALKAAIT---- 184 (396)
T ss_pred cC--------CCCCC--------CCceEeC----------------CCCH------------------HHHHHhcc----
Confidence 21 11110 1112222 3432 44555553
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++++||+||+ |+.+|.+.++++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++|+
T Consensus 185 ----~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~ 259 (396)
T PRK04073 185 ----PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG 259 (396)
T ss_pred ----cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccC
Confidence 36899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
|.+|+|++++++++++.+..
T Consensus 260 gg~~ig~~~~~~~i~~~~~~ 279 (396)
T PRK04073 260 GVFPISCVAANRDILGVFTP 279 (396)
T ss_pred CCCcceEEEEcHHHHhhhcC
Confidence 88899999999999998853
No 70
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=100.00 E-value=2.3e-45 Score=374.30 Aligned_cols=280 Identities=20% Similarity=0.287 Sum_probs=229.6
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
+.|+.|+++.|. |++|.+|+ +|||+++.+ ...||| ||+|++|..+|+...... ..+.|+...+.|++|.
T Consensus 28 sDP~kivRaq~Q--YmfDE~g~----~yLDCInNV--aHvghc-hp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVRAQGQ--YMFDEEGT----RYLDCINNV--AHVGHC-HPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhhehhccc--eeeccCcc----cHHHHhhhh--hhcccC-CHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 457888898887 79999999 999999854 368999 999999999999986543 3578999999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
..+|. ++.++|+|||||||+.|+|+| |.|+++ .++|.++.+|||+....|.+|..+ |+
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkh------------------qDvItldHAYHGHl~s~mE~SPYK-F~ 154 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNFTKH------------------QDVITLDHAYHGHLQSVMEVSPYK-FN 154 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhhccc------------------CceEEEechhccceeeeeecccee-cc
Confidence 99986 899999999999999999999 888776 489999999999999888887432 11
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+ . .+.-++-++..|.|+.|++..... .+.+ .+....|.+.+++.++...
T Consensus 155 ~g--------~-------~v~kpd~VHVAPcPDvyrGK~r~~---~~~~-----------a~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 155 QG--------G-------GVAKPDYVHVAPCPDVYRGKFRDK---MYPD-----------ADMGALYADPVKEICQDQL- 204 (452)
T ss_pred CC--------C-------CcCCCceeEecCCccccccccccc---cCCc-----------ccchhhhhhHHHHHHHHHH-
Confidence 11 0 011112356788999998753211 1111 1223456677777776521
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeehhccC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlgK~Lg 692 (719)
..+..|||+|.|.. |+.||-++||++|++.+.+..+.+|.++|+||||+||||.|+ +|++|.|++.|||||+||.||
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 24568999999997 999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhcC-CCCCCC
Q 005009 693 GGVIPLAATLATNAVFDSFVG-DSKKRE 719 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~~-~~~~~~ 719 (719)
+| .|+++|+++++|+++|.. +-.+||
T Consensus 283 NG-hPVa~VattkeIA~Af~atgv~YFN 309 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATGVEYFN 309 (452)
T ss_pred CC-CeeeEEeccHHHHHHhccccceehh
Confidence 99 799999999999999976 555553
No 71
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=100.00 E-value=7.5e-44 Score=397.69 Aligned_cols=257 Identities=21% Similarity=0.290 Sum_probs=208.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+++|+|++++||+ ||+|++|+++|+++..+. .+.++...+|+++|++
T Consensus 30 ~p~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~ 99 (423)
T TIGR00713 30 TPFFVARGKGA--YLYDVDGN----EYIDYVLSWGPLILGHA-HPRVVEAVKEALERGTSY---GAPTEAEILLAKEIIS 99 (423)
T ss_pred CCeeEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHH
Confidence 47788887775 89999999 99999999999999999 999999999999986542 3567889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+. .++|+|++|||||||+|+|+| |.|+++ .+||+++++|||.+.+++++++......
T Consensus 100 ~~~~--~~~v~~~~sGseA~e~Alk~a-r~~~gr------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 158 (423)
T TIGR00713 100 RVPS--VEMVRFVNSGTEATMSAVRLA-RGYTGR------------------DKIIKFEGCYHGHHDALLVKAGSGAATL 158 (423)
T ss_pred hCCc--ccEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCCCCChhhhhccccCccccc
Confidence 8875 379999999999999999999 788654 5899999999999888877665321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
..++... + + ....|+.++ ++|+| .+.+++.+.+
T Consensus 159 --~~~~~~~----~--~---------~~~~~~~~~--------~~~~d------------------~~~l~~~i~~---- 191 (423)
T TIGR00713 159 --GLPTSPG----V--P---------EDFAKLTLV--------LPYND------------------LEALEEVFEE---- 191 (423)
T ss_pred --CCCCCCC----C--C---------cccccceEE--------eCCCC------------------HHHHHHHHHH----
Confidence 0011000 0 0 000111111 12343 2556777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++|||+||+ ||++|+++++++|+++|+++|++||++||+||||||| |+|.+|+++++++.|||+||||++|+|
T Consensus 192 -~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G 268 (423)
T TIGR00713 192 -YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG 268 (423)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 269 -~pig~v~~~~~i~~~~~~ 286 (423)
T TIGR00713 269 -LPVGAFGGRREIMERLAP 286 (423)
T ss_pred -CceeeeeEHHHHHHhhCc
Confidence 799999999999998863
No 72
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=100.00 E-value=1.9e-43 Score=395.18 Aligned_cols=268 Identities=26% Similarity=0.360 Sum_probs=219.4
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 24 p~~~~~~~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 96 (425)
T PRK08088 24 PIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQK 96 (425)
T ss_pred CceEEeeeeC--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHh
Confidence 6688887775 79999999 99999999999999999 99999999999999877654445688999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.|.+..++++|++||+||||+|||+| |.++++ .+||+|+++|||+|.+++++++...
T Consensus 97 ~~~~~~~~~~f~~sGsea~e~Alkla-r~~~~r------------------~~iv~~~~~yHG~~~~~~~~~~~~~---- 153 (425)
T PRK08088 97 VPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGVIAFTGAYHGRTHYTLALTGKVN---- 153 (425)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHHhCC------------------CeEEEECCccCCccHHHHHhhCCCC----
Confidence 77553469999999999999999999 777654 4899999999999999999986321
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
++..++++. + .+..++++|..+ ++. ..+.+.+.+++.++.. .
T Consensus 154 ---~~~~~~~~~--~------~~~~~~~~p~~~------------~~~------------~~~~~~~~l~~~l~~~---~ 195 (425)
T PRK08088 154 ---PYSAGMGLM--P------GHVYRALYPCPL------------HGV------------SEDDAIASIERIFKND---A 195 (425)
T ss_pred ---ccccCCCCC--C------CCcEEcCCCccc------------cCc------------cHHHHHHHHHHHHHhc---c
Confidence 122222211 1 122344444322 110 0123356678777531 2
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
.++++||||+||+ ||++|+++++++|+++|+++|++||+++|+|||+|||||+|++++++++++.|||.+|||+|++|
T Consensus 196 ~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 273 (425)
T PRK08088 196 APEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG- 273 (425)
T ss_pred CCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-
Confidence 3578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 274 ~rig~v~~~~~~~~~~~~ 291 (425)
T PRK08088 274 FPLAGVTGRAEVMDAIAP 291 (425)
T ss_pred CcceeeEecHHHHhhcCC
Confidence 799999999999998854
No 73
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=2.5e-43 Score=394.26 Aligned_cols=256 Identities=23% Similarity=0.325 Sum_probs=206.9
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+++|+|+.++||+ ||+|++|+++|+++..+ ..+.++...+|+++|++
T Consensus 32 ~~~~~~~a~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~ 101 (426)
T PRK00062 32 TPRFIERAKGA--YLYDVDGN----EYIDYVGSWGPMILGHA-HPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIE 101 (426)
T ss_pred CCeEEEeCcCC--EEEeCCCC----EEEEcccchhhhhcCCC-CHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHH
Confidence 36778887775 89999999 99999999999999999 99999999999998432 23568889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.++. .++|+|+|||+||||+|+|+| |.++++ .+||+|+++|||+|.++.++++......
T Consensus 102 ~~~~--~~~v~~~~sGseA~e~Aik~a-~~~~g~------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 160 (426)
T PRK00062 102 LVPS--IEMVRMVNSGTEATMSAIRLA-RGYTGR------------------DKIIKFEGCYHGHADSLLVKAGSGAATL 160 (426)
T ss_pred hCCC--CCEEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEEcCccCCchhhhhhccCcccccc
Confidence 8763 589999999999999999999 677543 5899999999999988888765321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. .++... . +. .+ .+..++ ++|+| .+.+++.+++
T Consensus 161 ~--~~~~~~----~--~~--------~~-~~~~~~--------~~~~d------------------~~~l~~~i~~---- 193 (426)
T PRK00062 161 G--LPDSPG----V--PE--------DF-AKHTLT--------APYND------------------LEAVEELFEE---- 193 (426)
T ss_pred C--CCCCCC----C--Cc--------cc-ccceEE--------cCCCC------------------HHHHHHHHHh----
Confidence 0 011000 0 00 00 011111 12343 2456666653
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ||++|+++++++||++|+++|++||++||+||||||| |+|.+|+++++++.|||+++||++|||
T Consensus 194 -~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G 270 (426)
T PRK00062 194 -YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG 270 (426)
T ss_pred -CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC
Confidence 3568999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++++++++++.|.
T Consensus 271 -~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 271 -LPVGAFGGRREIMEQLA 287 (426)
T ss_pred -CcceeeeEHHHHHHhhc
Confidence 79999999999999885
No 74
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=387.78 Aligned_cols=255 Identities=23% Similarity=0.337 Sum_probs=213.1
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||+||+|++++||+ ||+|++|+++|++++.+... .+.++...+|+++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 84 (389)
T PRK01278 13 ADLAFERGEGV--WLIDEDGE----RYLDFASGIAVNSLGHA-HPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVE 84 (389)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHh
Confidence 46788887775 79999999 99999999999999999 99999999999998766542 3568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++|+|++||+||||+|+|+| |.|+..+|. ++|.+||+++++|||++.+++++++...++.
T Consensus 85 ~~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~------------~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 148 (389)
T PRK01278 85 NSF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH------------PERYRIITFEGAFHGRTLATIAAGGQEKYLE 148 (389)
T ss_pred hCC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCCcHHHHhccCChhhcc
Confidence 875 479999999999999999999 777655443 5678999999999999999999987543332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. +++.++ +|+|. +.+++.+.
T Consensus 149 ~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~----- 173 (389)
T PRK01278 149 G--------FGPLV--------PGFDQV----------------PFGDI------------------EALKAAIT----- 173 (389)
T ss_pred c--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhhC-----
Confidence 1 00000 111111 13432 45666653
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++||+||+ |+.+|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||++++|
T Consensus 174 ---~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 249 (389)
T PRK01278 174 ---PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG 249 (389)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC
Confidence 37999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 250 -~~ig~~~~~~~~~~~~~~ 267 (389)
T PRK01278 250 -FPLGACLATEEAAKGMTP 267 (389)
T ss_pred -cceEEEEEcHHHHhccCC
Confidence 799999999999988754
No 75
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=100.00 E-value=8.4e-43 Score=387.05 Aligned_cols=254 Identities=25% Similarity=0.346 Sum_probs=211.2
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++.+++|. |+||.||+ +||||++|+|+++|||+ ||+|.+|+.+|++++.+... .+.+++..+|+++|++.
T Consensus 23 ~~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (403)
T PRK05093 23 EFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDA 94 (403)
T ss_pred CeeEEEeecC--EEEeCCCC----EEEEcCcCHHhccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhh
Confidence 5678887775 89999999 99999999999999999 99999999999998655432 34688899999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.+ .++++|++||+||||+|+|+| |.++.+++. .+|.+||+++++|||+|.+++++++...++..
T Consensus 95 ~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~------------~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~ 158 (403)
T PRK05093 95 TF---AERVFFANSGAEANEAAFKLA-RRYACDRHG------------PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDG 158 (403)
T ss_pred CC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEEcCCcCCchhhhHhhcCChhhhhc
Confidence 75 479999999999999999999 777654322 45789999999999999999998865432221
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
..+. + .+..++ +|||. +.+++.+.
T Consensus 159 --------~~~~---~-----~~~~~~----------------~~~d~------------------~~l~~~l~------ 182 (403)
T PRK05093 159 --------FGPK---P-----ADITHV----------------PFNDL------------------AAVKAVID------ 182 (403)
T ss_pred --------CCCC---C-----CCcEEe----------------CCCCH------------------HHHHHHhc------
Confidence 1110 0 011122 24542 45565553
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
+++++||+||+ +++||+++++++|+++|+++|++||+++|+|||++||||+|++++++++++.|||++|||++++|
T Consensus 183 --~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 258 (403)
T PRK05093 183 --DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG- 258 (403)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC-
Confidence 36999999998 99999999999999999999999999999999999999999999888999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 259 ~rig~vv~~~~i~~~l~~ 276 (403)
T PRK05093 259 FPIGAMLTTAEIASHFKV 276 (403)
T ss_pred cceEEEEEcHHHHhhcCC
Confidence 799999999999998754
No 76
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=100.00 E-value=7.6e-43 Score=390.82 Aligned_cols=242 Identities=20% Similarity=0.249 Sum_probs=188.3
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+. ...+....+|+++|+
T Consensus 29 ~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~ 98 (431)
T PRK06209 29 LAPGFIQRGSGA--HVWDVDGN----EYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGCNF---TRPSAIELDAAESFL 98 (431)
T ss_pred CCCeEEEeccCC--EEEeCCCC----EEEEccccccchhcCCC-CHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHH
Confidence 457788887775 89999999 99999999999999999 999999999999987542 234556678999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE-eCCcccCccccccccCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~-~~syHG~t~galslt~~~~~ 532 (719)
+.+|. .++|+|+||||||||+|||+| |+|++| .+|+++ .++|||........+...
T Consensus 99 ~~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~i~~~~~~~~h~~~~~~~g~~~~~-- 155 (431)
T PRK06209 99 ELIDG--ADMVKFCKNGSDATSAAVRLA-RAYTGR------------------DLVARCADHPFFSTDDWFIGTTPMS-- 155 (431)
T ss_pred HhCCc--cceEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEeccCccccccccccccCCCC--
Confidence 98874 579999999999999999999 888765 489999 788887422111100000
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
. ..|. .. ...+.. ++||| .+.+++.+++
T Consensus 156 -~--------------~~~~-----~~--~~~~~~----------~~~~d------------------~~~l~~~l~~-- 183 (431)
T PRK06209 156 -A--------------GIPA-----SV--SALTVT----------FRYND------------------IASLEALFED-- 183 (431)
T ss_pred -C--------------CCCh-----hH--hccccc----------cCCCC------------------HHHHHHHHHh--
Confidence 0 0000 00 000000 12454 2567777763
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
+++++||||+||+ ||+ .+|++||++|+++|++||++||+|||||||++++ +++.+++|+.|||+|+||+||
T Consensus 184 ---~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lg 254 (431)
T PRK06209 184 ---HPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALG 254 (431)
T ss_pred ---CCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhc
Confidence 3568999999998 886 7889999999999999999999999999998764 344446899999999999999
Q ss_pred CCccchheeEeCHHHHhh
Q 005009 693 GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~ 710 (719)
|| +|+|++++++++++.
T Consensus 255 gG-~p~~av~~~~~i~~~ 271 (431)
T PRK06209 255 NG-FAVSALAGKREYMEL 271 (431)
T ss_pred CC-cccEEEEEHHHHHhh
Confidence 99 799999999999997
No 77
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=100.00 E-value=2.2e-42 Score=383.38 Aligned_cols=259 Identities=22% Similarity=0.326 Sum_probs=214.6
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +||||+|++++.++||+ ||+|++|+++|++++.+... .+.++...+|+++|+++
T Consensus 20 ~~~~~~~~g~--~~~~~~g~----~~lD~~s~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 91 (401)
T TIGR01885 20 PVVFSKAEGV--HVWDVEGK----RYLDFLSAYSAVNQGHC-HPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKL 91 (401)
T ss_pred CceEEeeecC--EEEeCCCC----EEEEcccCHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5677787776 79999999 99999999999999999 99999999999999876553 34689999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc-cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~-G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
++ .++++|++||+||||+|||+| |.++.++ |. ..+|.+|++++++|||+|.+++++++...+..
T Consensus 92 ~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~-----------~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 92 FG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGI-----------PENQAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred cC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCC-----------CCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 86 479999999999999999999 6765332 21 13478999999999999999999987533221
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +++.. | +...+ +|+| .+.+++.+++
T Consensus 157 ~--------~~~~~--~------~~~~~----------------~~~d------------------~~~le~~l~~---- 182 (401)
T TIGR01885 157 N--------FGPYV--P------GFKKI----------------PYNN------------------LEALEEALED---- 182 (401)
T ss_pred c--------cCCCC--C------CceEe----------------CCCC------------------HHHHHHHHHh----
Confidence 1 11110 1 11111 2444 2456777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++++|++.|+++||++|+++|++||++||+|||+|||||||++|+++++++.||++|+||+++||
T Consensus 183 -~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g 260 (401)
T TIGR01885 183 -HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGG 260 (401)
T ss_pred -cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCC
Confidence 2468999999998 99999999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
++|+|++++++++++.+..
T Consensus 261 ~~~ig~v~~~~~i~~~~~~ 279 (401)
T TIGR01885 261 VYPVSAVLADDDVMLTIKP 279 (401)
T ss_pred CCCcEEEEEcHHHHhhccC
Confidence 8899999999999988754
No 78
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-43 Score=364.29 Aligned_cols=291 Identities=21% Similarity=0.237 Sum_probs=216.0
Q ss_pred ecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh----ccC
Q 005009 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ----GVG 457 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~----~~~ 457 (719)
.+.-|.|++|+||| ++||.++++.++.+||| ||.++++++.--..-..++.+...+-+..++++.|.+ .+|
T Consensus 63 EkS~GNYlvDvDGN----~lLDvYsQIsSvplGYn-~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~AP 137 (484)
T KOG1405|consen 63 EKSIGNYLVDVDGN----RLLDVYSQISSVPLGYN-NPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAP 137 (484)
T ss_pred hhhcCceEEecCCC----eeehhhhhhcccccCCC-CHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCc
Confidence 34445589999999 99999999999999999 9999999874222222333333444455666666655 668
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCC-------ccccCcceEEEEEeCCcccCccccccccCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKD-------TTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~-~G~~~~~~~~~-------~~~~~~r~kII~~~~syHG~t~galslt~~ 529 (719)
+| ++.|++..|||+|||+|+|.|+-+|..+ +| ..+++.++ +++......|++|+|+|||+|++++|+|.+
T Consensus 138 KG-~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg-~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~S 215 (484)
T KOG1405|consen 138 KG-QKQVITMLCGSCANENAYKTAFIWYRAKERG-QAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHS 215 (484)
T ss_pred ch-HHHHHHHhccccccHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccC
Confidence 77 7899999999999999999998777643 34 34554444 457778889999999999999999999987
Q ss_pred CCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHh
Q 005009 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (719)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~ 609 (719)
+..++. ..|.|+||.. ++|.. .++-+ +....+....+.|++.+|+.|.
T Consensus 216 KpIHKl--------diPaFdWPiA---------~fP~y-------------kYPLd--env~~N~ked~~Cl~~Ve~li~ 263 (484)
T KOG1405|consen 216 KPIHKL--------DIPAFDWPIA---------PFPRY-------------KYPLD--ENVAENKKEDQGCLAEVEDLIV 263 (484)
T ss_pred cccccc--------CCCCCCCCCC---------CCccc-------------cCChh--hhhhhhhhhhhhHHHHHHHHHH
Confidence 665542 2234555543 33311 00000 0011122334677899999998
Q ss_pred cCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC--Ccceeee
Q 005009 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIACY 687 (719)
Q Consensus 610 ~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv--~PDIvtl 687 (719)
++. .....|||+||||| |++||+...+++|+++||++|+||||.+|+||||||-|-||++|+++||++ .||+|||
T Consensus 264 ~~~--~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTF 340 (484)
T KOG1405|consen 264 KYR--KKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTF 340 (484)
T ss_pred HHh--hcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceeh
Confidence 763 23458999999998 999999999999999999999999999999999999999999999999998 5999999
Q ss_pred hhcc-CCCccchheeEeCH--HHHhhhcCC
Q 005009 688 GKLL-TGGVIPLAATLATN--AVFDSFVGD 714 (719)
Q Consensus 688 gK~L-ggG~~Plsavl~~~--~i~~~~~~~ 714 (719)
+|-+ +|||+---...-++ .+++.++++
T Consensus 341 SKK~q~gGffh~~~frpn~pYrifNTWmGd 370 (484)
T KOG1405|consen 341 SKKFQTGGFFHDEEFRPNEPYRIFNTWMGD 370 (484)
T ss_pred hhhhhcCccccCcccCCCchHHHhhhhcCC
Confidence 9998 67875433333332 455555554
No 79
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=8.9e-41 Score=366.89 Aligned_cols=249 Identities=24% Similarity=0.290 Sum_probs=206.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||+|++|+++|||+ ||+|++|+++|++++.+.+ ..+.++...+|+++|++
T Consensus 11 ~~~~~~~~~G~--~~~d~~G~----~~lD~~s~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 82 (377)
T PRK02936 11 FPIDIVKGKGT--KVTDNNGK----TYLDFTSGIAVCNLGHC-HPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAE 82 (377)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHh
Confidence 46678887776 79999999 99999999999999999 9999999999999875543 23568889999999998
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||+||||+|+|+| |.++++ .+||+++++|||++.+++++++...++.
T Consensus 83 ~~~---~~~~~~~~sG~~a~~~A~~~a-~~~~g~------------------~~vi~~~~~~Hg~~~~~~~~~~~~~~~~ 140 (377)
T PRK02936 83 NSA---GDLVFFCNSGAEANEAALKLA-RKHTGK------------------SKIVTFEQSFHGRTFGTMSATGQEKIKE 140 (377)
T ss_pred cCC---CCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCCcHHhhhccCCccccc
Confidence 766 368999999999999999999 666543 5899999999999999999887543322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. + +...+ +|+|. +.+++.+.
T Consensus 141 ~--------~~~~~--~------~~~~~----------------~~~d~------------------~~l~~~~~----- 165 (377)
T PRK02936 141 G--------FGPLL--P------GFTHV----------------PFNDI------------------KALKEVMN----- 165 (377)
T ss_pred c--------CCCCC--C------CceEe----------------CCCCH------------------HHHHHhcc-----
Confidence 1 11110 0 11111 13432 44555553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++||+||+ |+++|+++++++|+++|+++|++||+++|+|||+|||||+|++|+++++++.||++|+||++++|
T Consensus 166 ---~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 241 (377)
T PRK02936 166 ---EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG 241 (377)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC
Confidence 36899999998 99999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 242 -~~ig~v~~~~~~~~~~~~ 259 (377)
T PRK02936 242 -IPVGAMIGKKELGTAFGP 259 (377)
T ss_pred -CccEEEEEcHHHHhhccC
Confidence 799999999999998854
No 80
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=100.00 E-value=8.9e-41 Score=370.00 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=210.5
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +|||+++|+++.++||+ ||+|.+|+++|++++.+.+. .+.++...+|+++|+++
T Consensus 24 ~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~~Gh~-~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTRGEGV--WVWDTDGN----RYLDCLSAYSAVNQGHC-HPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5577787765 89999999 99999999999999999 99999999999999887653 45688999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~-~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+ .++++|++||+||||+|||+| |.++. ++|. ..+|.+||++.++|||+|.+++++++.+.++.
T Consensus 96 ~~---~~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~-----------~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TG---SHKVLPMNSGAEAVETAIKAV-RKWGYEVKGV-----------PEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 87 369999999999999999999 66642 2221 13467999999999999999888876433222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.++ .+ +..++ +|+|. +.+++.+.
T Consensus 161 ~--------~~~~--~~------~~~~~----------------~~~d~------------------~~le~~i~----- 185 (401)
T PRK00854 161 G--------FGPF--TP------GFRVV----------------PFGDA------------------EALEAAIT----- 185 (401)
T ss_pred c--------CCCC--CC------CeEEe----------------CCCCH------------------HHHHHHhC-----
Confidence 1 1110 01 11222 24442 45666663
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++||+||+ ++.+|.+.++++||++|+++|++||++||+|||||||||+|++|+.+++|+.||++++||+|+||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999999888999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
++|+|++++++++++.+.
T Consensus 262 ~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred ccCeEEEEEcHHHHhccc
Confidence 889999999999999875
No 81
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=100.00 E-value=5.8e-40 Score=362.96 Aligned_cols=258 Identities=21% Similarity=0.291 Sum_probs=208.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++.+++|. |+||.||+ +||||++|+++.++||+ ||+|++|+++|++++.+.+. .+.++...+++++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dg~----~~lD~~~~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 84 (400)
T PTZ00125 13 LPVVLKRGKGV--FVWDVEGK----KYYDFLSAYSAVNQGHC-HPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITD 84 (400)
T ss_pred CCccEEeeecC--EEEeCCCC----EEEEcccCHhhccCCcC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHh
Confidence 35677787776 89999999 99999999999999999 99999999999998887653 3457788888888888
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
..+ .++++|++||+||||+|||++ |.++ .++|. ..++.+||+++++|||++.+++++++...+.
T Consensus 85 ~~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~-----------~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~ 149 (400)
T PTZ00125 85 LFG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGI-----------PENQAKIIFCNGNFSGRTIGACSASTDPKCY 149 (400)
T ss_pred CCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCCeEEEECCCcCCccHHHHhhcCCcchh
Confidence 765 579999999999999999999 5442 22221 0246799999999999999999988643221
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. .+.+.. ++...+ +++| .+.+++.+.
T Consensus 150 ~--------~~~~~~--------~~~~~~----------------~~~d------------------~~~le~~l~---- 175 (400)
T PTZ00125 150 N--------NFGPFV--------PGFELV----------------DYND------------------VEALEKLLQ---- 175 (400)
T ss_pred c--------cCCCCC--------CCceEe----------------CCCC------------------HHHHHHHhC----
Confidence 1 111100 011111 1333 255666664
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++++|++||+ |+.+|++.++++|+++|+++|++||++||+|||++||||+|++|+.+++++.||++|+||++++
T Consensus 176 ---~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~ 251 (400)
T PTZ00125 176 ---DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSG 251 (400)
T ss_pred ---CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccC
Confidence 247999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
|+.|+|++++++++++.+..
T Consensus 252 g~~~ig~v~~~~~~~~~~~~ 271 (400)
T PTZ00125 252 GLYPISAVLANDDVMLVIKP 271 (400)
T ss_pred CCcCcEEEEEcHHHHhhccC
Confidence 97799999999999998753
No 82
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=6.1e-40 Score=362.99 Aligned_cols=251 Identities=22% Similarity=0.284 Sum_probs=207.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||.+|+++++|||+ ||+|.+|+++|++++.+.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~~~d~dg~----~~lD~~s~~~~~~lG~~-~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVRGEGA--VVWDVDGK----EYLDLLGGIAVNALGHA-HPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEEeeec--EEEECCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 46788887775 79999999 99999999999999999 9999999999999977643 24567888999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+....++++|++||+||+++|+|++ +. ++ |.+||.++++|||.+.+++++++...+..
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~-~~-~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLA-RL-TG------------------RTKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHH-HH-HC------------------CCeEEEECCCcCCccHHHHhccCCccccc
Confidence 877432469999999999999999999 44 22 35899999999999999998887443222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. + .+ +. .+...+ +|+| .+.+++.+.
T Consensus 157 ~----~----~~-~~-------~~~~~~----------------~~~d------------------~~~l~~~~~----- 181 (398)
T PRK03244 157 P----F----EP-LP-------GGVEHV----------------PYGD------------------VDALAAAVD----- 181 (398)
T ss_pred C----C----CC-CC-------CCceEe----------------CCCC------------------HHHHHHhhc-----
Confidence 1 0 00 00 011111 1333 134555542
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++||+||+ |+.+|+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+||+|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.|..
T Consensus 258 -~~ig~~~~~~~~~~~~~~ 275 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTP 275 (398)
T ss_pred -cccEEEEEcHHHHhhccC
Confidence 799999999999998854
No 83
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=100.00 E-value=7.6e-40 Score=332.00 Aligned_cols=198 Identities=31% Similarity=0.411 Sum_probs=172.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCC---ChHHHHHHhcCCCccccCCCccccc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD---SDSRFLFTKLPSLSLRRNFPSSLIL 112 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (719)
||+.|||||||||||||++|++|+++++ ++|+++.+|||||+|..+. +|+.++.+.. +
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~-~------------- 61 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQRLS-G------------- 61 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHHhc-C-------------
Confidence 5789999999999999999999999994 8999999999999998765 5777666553 2
Q ss_pred cchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCC
Q 005009 113 SNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (719)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (719)
.+++|+. +|+|.|++|+|||+|++.| |+.+
T Consensus 62 ------------------~~~~~~~-------------------------------~~py~f~~P~sPhlAa~~e-g~~I 91 (223)
T COG0132 62 ------------------LDLSYEL-------------------------------INPYRFKEPLSPHLAAELE-GRTI 91 (223)
T ss_pred ------------------CCccccc-------------------------------ccceecCCCCCcHHHHhhc-CCcc
Confidence 2333333 8999999999999999999 9999
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
+.+++...+.++.+. +|+|||||||||++|++++.+.+||++.+++|||||+..++|||||++++++
T Consensus 92 ~~~~l~~~l~~l~~~-------------~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 92 DLEKLSQGLRQLLKK-------------YDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred cHHHHHHHHHhhhcc-------------cCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHH
Confidence 999999988887653 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCC--CC----HHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGL--VN----EVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~--~~----~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
+++++|+++.|||+|+... .. ...+++.+ +.|++| +|+.++..
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~--~~p~~g~~p~~~~~~ 208 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRI--GAPLLGIIPYLPESE 208 (223)
T ss_pred HHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhc--CCCccccccCCcccc
Confidence 9999999999999999822 22 22344455 999999 99987644
No 84
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=100.00 E-value=6e-38 Score=347.36 Aligned_cols=279 Identities=28% Similarity=0.437 Sum_probs=223.4
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+++++.+|++++ . ...|.++++++|. ++||.||+ +||||++|+++.++||+ ||+|++|+++|+++..+
T Consensus 3 ~~~~~~~~~~~~--~---~~~~~~~~~~~g~--~~~d~dG~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYT--V---RPYPLVIVRAEGA--YLYDVDGN----RYLDFLSGIGVLNLGHN-HPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhcccccc--C---CCCCceEEeeecC--EEEeCCCC----EEEEcCccHHhhccCCC-CHHHHHHHHHHHHhCcC
Confidence 456778899886 1 2467889887776 79999999 99999999999999999 99999999999987665
Q ss_pred ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeC
Q 005009 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (719)
Q Consensus 435 ~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~ 514 (719)
.....+.++...+|+++|++..|.+ .++++|++||+|||+.|++++ |.++++ .+||.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~~~~------------------~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYTGR------------------KKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHcCC------------------CeEEEECC
Confidence 4432236889999999999998743 589999999999999999999 666543 48999999
Q ss_pred CcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCch
Q 005009 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (719)
Q Consensus 515 syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~ 594 (719)
+|||++.+++++++...++.. +.+.. .....+|.+.+++. +
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~~~~~~~~-----------------------~ 171 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGG------------FGPLL----PGVLHVPYPYRYRP-----------------------P 171 (413)
T ss_pred CcCCccHHHHHhcCCcccccc------------CCCCC----CCcEEeCCCccccc-----------------------h
Confidence 999999999998865433321 00000 01122222211100 0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 595 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
.......+.+++.+.+ +++++++||+||+ ++.+|.+.++++|+++|+++|++||++||+|||++||||+|.+++
T Consensus 172 ~~~~~d~~~l~~~l~~-----~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 172 AELADDLEALEEALEE-----HPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred hhHHHHHHHHHHHHhc-----CCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 0011124667777763 3568999999997 999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 675 ~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
++++++.||++|+||++++| +|+|++++++++++.+
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~ 281 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAF 281 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhh
Confidence 99999999999999999999 8999999999999986
No 85
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=7.2e-38 Score=344.17 Aligned_cols=247 Identities=23% Similarity=0.272 Sum_probs=200.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||+ +|||+.||+++.++|| ||+|++|+.+|++++.+.. ..+.++...+++++|+.
T Consensus 11 ~~~~~~~~~G~--~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 81 (375)
T PRK04260 11 AAIEFVKAEGN--YLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIG 81 (375)
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhc
Confidence 36678887776 89999999 9999999999999999 6899999999999865433 23457778888888865
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
. + ..+++|++||+|||+.|+|+| |.+++ |.+||+++++|||++.+++++++...++.
T Consensus 82 ~-~---~~~~~~~~SGseA~~~Al~~a-r~~~~------------------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~ 138 (375)
T PRK04260 82 D-K---DYLAFFCNSGAEANEAAIKIA-RKATG------------------KQEIITFQNSFHGRTFGSMSATGQDKIKD 138 (375)
T ss_pred C-c---CCEEEEcCccHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCcccHHHHhccCCcccCC
Confidence 3 1 247899999999999999999 66644 35899999999999999999987543332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +++. ++. .+. .+|+| .+.+++.+.
T Consensus 139 ~--------~~~~--~~~-----------~~~-----------~~~~d------------------l~~l~~~l~----- 163 (375)
T PRK04260 139 G--------FGDG--VPH-----------FSY-----------AIFND------------------LNSVKALVN----- 163 (375)
T ss_pred C--------CCCC--CCC-----------eEE-----------eCCCC------------------HHHHHHhcC-----
Confidence 1 1110 000 000 01333 244555442
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++|++||+ ++++|++.++++|+++++++|+++|+++|+|||++||||+|.+|.++++++.|||+||||+||+|
T Consensus 164 ---~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 239 (375)
T PRK04260 164 ---KNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG 239 (375)
T ss_pred ---CCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC
Confidence 46899999998 99999999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.|..
T Consensus 240 -~~ig~~~~~~~~~~~~~~ 257 (375)
T PRK04260 240 -VPVGAMLAKSSLGGAFGY 257 (375)
T ss_pred -cceEEEEEcHHHHhhcCC
Confidence 799999999999998853
No 86
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=100.00 E-value=8.5e-38 Score=344.81 Aligned_cols=253 Identities=25% Similarity=0.364 Sum_probs=209.3
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +|||+.+|++++++||+ ||+|.+|+++|+++..+.. ..+.++...+|+++|++.
T Consensus 22 ~~~~~~~~G~--~~~d~dg~----~~iD~~~g~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 22 PIAFVRGEGA--RLWDDDGK----EYLDFLAGIAVNNLGHC-HPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVEL 93 (396)
T ss_pred CceEEeeeeC--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 6688887776 79999999 99999999999999999 9999999999999876543 235688899999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.+ .++++|++||+||++.|+|++ +.++++.+ .++.+|++++++|||.+..++++++...++..
T Consensus 94 ~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~-------------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (396)
T PRK02627 94 SG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKG-------------IEKPEIITAENSFHGRTLATLSATGQPKYQEG 156 (396)
T ss_pred cC---CCEEEECCCcHHHHHHHHHHH-HHHhcccC-------------CCCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence 65 589999999999999999999 77766542 23478999999999999999998865433221
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
..+. .++...+ +|+| .+.+++.+.
T Consensus 157 --------~~~~--------~~~~~~~----------------~~~d------------------~~~l~~~i~------ 180 (396)
T PRK02627 157 --------FEPL--------VEGFIYV----------------PFND------------------IEALKAAIT------ 180 (396)
T ss_pred --------CCCC--------CCCceEe----------------CCCC------------------HHHHHHhcC------
Confidence 0000 0111111 1333 244555552
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
+++++||+||+ |+.+|+.+++++|+++|+++|++||++||+|||++||||+|++++++++++.||++||||++++|
T Consensus 181 --~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G- 256 (396)
T PRK02627 181 --DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGG- 256 (396)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCC-
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 257 ~rig~~~~~~~~~~~~~~ 274 (396)
T PRK02627 257 VPIGAVLAKEKVADVFTP 274 (396)
T ss_pred cccEEEEEcHHHHhccCC
Confidence 799999999999988853
No 87
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=100.00 E-value=1.3e-35 Score=298.61 Aligned_cols=196 Identities=34% Similarity=0.457 Sum_probs=162.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (719)
++|||+||+|+||||+||+||+++|. ++|.+|+|||||++|...+.|..++.+.+ ++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~----------------- 57 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GL----------------- 57 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CT-----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CC-----------------
Confidence 58999999999999999999999995 89999999999999998888999887664 22
Q ss_pred hhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHH
Q 005009 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (719)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v 197 (719)
+. .....+++.|++|++|+++++.+ +..+.++++
T Consensus 58 --------------~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 58 --------------SE-------------------------------PPDDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp --------------CC-------------------------------CHHHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred --------------Cc-------------------------------ccccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 00 12346899999999999999998 777777777
Q ss_pred HHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhC
Q 005009 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (719)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~ 277 (719)
+ ++++.+. +|++||||+||+++|...+.+|+|||+.|++|||||++.++|+++|+++++++++.+
T Consensus 92 ~--~~~l~~~-------------~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEE-------------YDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTT-------------TCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhc-------------CCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 6 5555543 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccC-CCCCHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 005009 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 278 ~~~v~gvi~N~~-~~~~~~~l~~~~~~~~pvlg-lP~~~~~~~~ 319 (719)
|+++.|||+|++ ..++.++++++. ++||+| ||+.+.++++
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~~--~i~vlg~iP~~~~L~~p 198 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREKS--GIPVLGVIPEDPDLSAP 198 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHHH--CCEECE---SSTT----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHhC--CCCEEEECCCCcccccC
Confidence 999999999998 556888888888 899999 9999998765
No 88
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.98 E-value=1.2e-31 Score=276.58 Aligned_cols=202 Identities=21% Similarity=0.202 Sum_probs=162.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CChHHHHHHhcCCCccccCCCcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSS 109 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~ 109 (719)
|+++|||+||+|++|||+||++|+++|. ++|++|+|||||++|+.. +.|+.++.+.+ +
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~-----~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~-~---------- 64 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALA-----SQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVS-S---------- 64 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEECccccCCccCCCCCchHHHHHHHHhc-C----------
Confidence 4568999999999999999999999995 889999999999998632 24555554432 1
Q ss_pred ccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcC
Q 005009 110 LILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESG 189 (719)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~ 189 (719)
.+.| +..++||.|+.+. +++.+ +
T Consensus 65 ---------------------~~~~-------------------------------~~~~~p~~~~~~~----a~~~~-~ 87 (231)
T PRK12374 65 ---------------------IELP-------------------------------YEAVNPIALSEEE----SSVAH-S 87 (231)
T ss_pred ---------------------CCCC-------------------------------HHhccCeecCCCc----ChHHc-C
Confidence 1122 2336788776653 45566 7
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHH
Q 005009 190 GVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (719)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (719)
..++.++|.+.++++.+. +|+|||||+||+++|++......|++..+++|+|||++.++|++||+++
T Consensus 88 ~~i~~~~i~~~~~~l~~~-------------~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lL 154 (231)
T PRK12374 88 CPINYTLMSNGLANLSEK-------------VDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALL 154 (231)
T ss_pred CcCCHHHHHHHHHHHHhh-------------CCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHH
Confidence 778889999999876544 9999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 005009 270 AYESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (719)
Q Consensus 270 ~~~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-lP~~~~~~~~~~~~~l 325 (719)
+++.++.+|++++|||+|++... +...+.+.. ++|++| ||+.+.++..++.+++
T Consensus 155 t~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~--~~~~lg~iP~~~~~~~~~~~~~l 215 (231)
T PRK12374 155 TAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKL--PAPLIGELPYLPRAEQRELGQYI 215 (231)
T ss_pred HHHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhc--CCCEEEEeCCCCCCChHHHHhhc
Confidence 99999999999999999998322 233444444 899999 9999876655555554
No 89
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.97 E-value=6.5e-31 Score=288.16 Aligned_cols=254 Identities=28% Similarity=0.402 Sum_probs=204.9
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +||||++|+|++++||+ ||.|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 9 ~~~~~~~~~g~--~~~~~~g~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 80 (379)
T TIGR00707 9 LPVKIVRGKGA--YVYDVNGK----EYLDFVAGIAVNSLGHA-HPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVE 80 (379)
T ss_pred CCccEEEeecC--EEEeCCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHh
Confidence 46788888776 79999999 99999999999999999 9999999999999876543 23467889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .+++++++||+||++.|++++ +.+++..| +.+.+|++++.+|||.+..+...++...+..
T Consensus 81 ~~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~-------------~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 143 (379)
T TIGR00707 81 HSG---ADRVFFCNSGAEANEAALKLA-RKYTGDKG-------------KEKKKIIAFENSFHGRTMGALSATGQPKYQK 143 (379)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccC-------------CCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence 987 469999999999999999998 66655221 2346899999999999988887775432211
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. + .+.. ..... ++||| .+.+++.+.
T Consensus 144 ~----~----~~~~--------~~~~~----------------~~~~d------------------~~~l~~~~~----- 168 (379)
T TIGR00707 144 G----F----EPLV--------PGFSY----------------APYND------------------IESLKKAID----- 168 (379)
T ss_pred c----C----CCCC--------CCcee----------------eCCCC------------------HHHHHHHhh-----
Confidence 0 0 0000 00000 11333 244555554
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++.+|++||+ ++.+|...++.+++++|.++|++||+++|+||+++|||++|+++.++.+++.||++|+||++++|
T Consensus 169 ---~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 244 (379)
T TIGR00707 169 ---DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG 244 (379)
T ss_pred ---hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC
Confidence 25789999998 99999988899999999999999999999999999999999887777889999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 245 -~riG~~~~~~~~~~~~~~ 262 (379)
T TIGR00707 245 -VPIGATLAKEEVAEAFTP 262 (379)
T ss_pred -cccEEEEEcHHHHhhhcC
Confidence 799999999999998864
No 90
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.97 E-value=3.3e-30 Score=263.66 Aligned_cols=203 Identities=29% Similarity=0.379 Sum_probs=168.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC---CCChHHHHHHhcCCCccccCCCccccccch
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP---HDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (719)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|.. .+.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999995 89999999999999865 345777766554 22
Q ss_pred hhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHH
Q 005009 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (719)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (719)
+. ....++++.|+.|.+|+.+++++ +..++.+
T Consensus 60 ----------------~~-------------------------------~~~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------PL-------------------------------DYEDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------CC-------------------------------ChhhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 01 12347899999999999999988 8888899
Q ss_pred HHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH
Q 005009 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (719)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~ 275 (719)
++.+.++++.++ +|++||||+||+.+|...+.+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~-------------~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQ-------------YDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhh-------------CCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 999999876543 9999999999999998877899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEccCCCC-------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 005009 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (719)
Q Consensus 276 ~~~~~v~gvi~N~~~~~-------~~~~l~~~~~~~~pvlg-lP~~~~~~~~~~~~~l 325 (719)
.+|+++.|+|+|++... +.+.+++.+ ++|++| +|+.+......+.+++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~--gi~vlg~ip~~~~~~~~~~~~~~ 214 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERLL--PAPLLGELPYLAEAELAAAAEYL 214 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHHc--CCCeEEecCCCCCcchHHHHhhC
Confidence 99999999999998332 445556665 899999 9997654433444443
No 91
>PRK00784 cobyric acid synthase; Provisional
Probab=99.95 E-value=7.3e-27 Score=265.46 Aligned_cols=200 Identities=17% Similarity=0.080 Sum_probs=152.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC-----C---CCChHHHHHHhcCCCccccCCC
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-----P---HDSDSRFLFTKLPSLSLRRNFP 107 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~-----~---~~~d~~~~~~~~~~~~~~~~~~ 107 (719)
||++|||+||+|+||||+||++|+++|+ ++|++|++||||++.. + +.+|+.++.+.+.++
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~------- 68 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGV------- 68 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCC-------
Confidence 4789999999999999999999999994 8899999999985311 1 124666665544222
Q ss_pred ccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHh--
Q 005009 108 SSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-- 185 (719)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-- 185 (719)
.+...+||+.++ |.+|+.++.
T Consensus 69 --------------------------------------------------------~~~~~i~P~~~~-~~sp~~a~~~~ 91 (488)
T PRK00784 69 --------------------------------------------------------EPSVDMNPVLLK-PQSDRGSQVIV 91 (488)
T ss_pred --------------------------------------------------------CchhccCCEEec-CCCCCcceEEE
Confidence 011346788775 678776541
Q ss_pred -------------HhcCCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCC-CCCC-CCchhHHHHhhcC
Q 005009 186 -------------RESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGP-SGSLQCDLYRPFR 250 (719)
Q Consensus 186 -------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~-~p~~-~~~~~~dla~~l~ 250 (719)
.+ +..+..++|++.+.++.++ +|++||||+||++ .|+. .+.+++|||+.++
T Consensus 92 ~g~~~~~l~a~~~~~-~~~~~~~~I~~~~~~l~~~-------------~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~ 157 (488)
T PRK00784 92 QGKPVGNMDARDYHD-YKPRLLEAVLESLDRLAAE-------------YDVVVVEGAGSPAEINLRDRDIANMGFAEAAD 157 (488)
T ss_pred cCccccccCHHHHhh-cchhhHHHHHHHHHHHHhc-------------CCEEEEECCCCccccCcccCCchhHHHHHHcC
Confidence 22 4557788999999876644 9999999999999 5654 3578999999999
Q ss_pred CCEEEEEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcch
Q 005009 251 LPGILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (719)
Q Consensus 251 ~pvilV~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-lP~~~~~~~~~ 320 (719)
+|||||++.++| ++++++.+++.+..+ +.+|+|||+|++..+ +...+++.+ ++||+| ||+.+.+.-+.
T Consensus 158 ~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~--gipvLG~iP~~~~L~~~~ 234 (488)
T PRK00784 158 APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELT--GVPVLGVLPYLDDLRLPA 234 (488)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCcCh
Confidence 999999999998 589998888888754 479999999999532 222244444 899999 99998876544
No 92
>PRK07505 hypothetical protein; Provisional
Probab=99.94 E-value=6.3e-26 Score=251.90 Aligned_cols=231 Identities=10% Similarity=0.008 Sum_probs=168.5
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhccc--c-cC-CCCCChHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH--V-MF-PENVYEPALECAEL 451 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~--~-~~-~~~~~~~~~~Lae~ 451 (719)
..+++++| +++||.||+ +||||.| +.++| |+ ||+|++|+++|++++++ . .. ....++...+|+++
T Consensus 30 ~~~~~~~G--~~~~d~~g~----~~ld~~s---~~~lgl~~-~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~ 99 (402)
T PRK07505 30 LTVGEREG--ILITLADGH----TFVNFVS---CSYLGLDT-HPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEA 99 (402)
T ss_pred ceeeccCC--ccEEecCCc----eEEEeec---CCccCCCC-CHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHH
Confidence 45666655 589999999 9999998 57899 99 99999999999998652 1 11 12347889999999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|++.++ . ++++++||++|++.|+|++ +..... .+|.+||+++++|||+..+.. .
T Consensus 100 la~~~~---~-~~~~~~sG~~a~~~ai~~~-~~~~~~---------------~~~~~vi~~~~~~H~s~~~~~------~ 153 (402)
T PRK07505 100 LSELFG---A-SVLTFTSCSAAHLGILPLL-ASGHLT---------------GGVPPHMVFDKNAHASLNILK------G 153 (402)
T ss_pred HHHHhC---C-CEEEECChHHHHHHHHHHH-HhcccC---------------CCCCCEEEEchhhhHhHHhhh------h
Confidence 999887 3 7888999999999999998 321100 135679999999999432111 0
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
... . + + ....++ ++|. +.+++.+.+
T Consensus 154 ~~~--------~-~-----~------~v~~~~----------------~~d~------------------~~l~~~~~~- 178 (402)
T PRK07505 154 ICA--------D-E-----T------EVETID----------------HNDL------------------DALEDICKT- 178 (402)
T ss_pred hhh--------c-C-----C------eEEEeC----------------CCCH------------------HHHHHHHhc-
Confidence 000 0 0 0 011111 3332 445666642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc--cCccccCccccccccCC-Cccee---
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA--- 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq--TGfGRtG~~~a~e~~gv-~PDIv--- 685 (719)
...+++|+||+ ++.|++.. +++|+++|++||++||+||+| +||||+|++++.+++++ .||.+
T Consensus 179 ------~~~~~vl~~p~-~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~ 246 (402)
T PRK07505 179 ------NKTVAYVADGV-YSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA 246 (402)
T ss_pred ------CCCEEEEEecc-cccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence 35789999998 99876544 799999999999999999998 78999999988899998 88865
Q ss_pred -eehhccCCCccchheeE-eCHHHHhhhcC
Q 005009 686 -CYGKLLTGGVIPLAATL-ATNAVFDSFVG 713 (719)
Q Consensus 686 -tlgK~LggG~~Plsavl-~~~~i~~~~~~ 713 (719)
+++|++|+| .|.++ .++++.+.+..
T Consensus 247 ~s~sK~~~~~---Gg~~~~~~~~~~~~~~~ 273 (402)
T PRK07505 247 ASLGKAFGAS---GGVIMLGDAEQIELILR 273 (402)
T ss_pred Eechhhhhcc---CeEEEeCCHHHHHHHHH
Confidence 799999863 13344 47788877643
No 93
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.92 E-value=4.5e-24 Score=208.56 Aligned_cols=165 Identities=28% Similarity=0.397 Sum_probs=140.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC-CChHHHHHHhcCCCccccCCCccccccchhhhh
Q 005009 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (719)
Q Consensus 41 ~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (719)
||+||++|+|||+++++|+++|. ++|+||++|||++++... +.|..++.+.. +.
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~-~~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNIS-GT------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHc-CC-------------------
Confidence 79999999999999999999994 889999999999998653 46666665543 11
Q ss_pred hHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHHHH
Q 005009 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (719)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v~~ 199 (719)
.. ....++++.+..|.+|+.+...+ +.....+++.+
T Consensus 56 ------------~~-------------------------------~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------AL-------------------------------DWDEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CC-------------------------------chhccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 00 11225678888899999887776 66678888989
Q ss_pred HHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 005009 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (719)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (719)
.+.++.++ +|++||||+||+.+|+....+++|+++.+++|||||++.+.++++++..+.+.++++|+
T Consensus 92 ~~~~l~~~-------------~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQK-------------YDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhc-------------CCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 88876543 99999999999999988888999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 005009 280 DVVAVVFE 287 (719)
Q Consensus 280 ~v~gvi~N 287 (719)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
No 94
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.92 E-value=5.7e-24 Score=238.74 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=142.6
Q ss_pred HHHhcccCCCCCCCC-CCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHh
Q 005009 18 LRLFHHSTFHPQPLD-LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTK 96 (719)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~ 96 (719)
-.+++.+-----.+. .+-+|+.|||+||+||||||+||++|+++|+ ++ |.+||| | ++..|.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---G-pD~id~------ 279 (476)
T PRK06278 218 EKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---G-PDVRDI------ 279 (476)
T ss_pred HHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---C-CChhhc------
Confidence 345555443322222 2236889999999999999999999999994 33 999995 4 222220
Q ss_pred cCCCccccCCCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeeccc
Q 005009 97 LPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEE 176 (719)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (719)
. ..++.|+.
T Consensus 280 ~-----------------------------------------------------------------------p~~~~~~~ 288 (476)
T PRK06278 280 V-----------------------------------------------------------------------PSLYLLRE 288 (476)
T ss_pred C-----------------------------------------------------------------------Ccceeccc
Confidence 0 12578999
Q ss_pred CcChHHHHhHhcCCC-CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCC---chhHHHHhhcCCC
Q 005009 177 AVSPHLAAERESGGV-VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLP 252 (719)
Q Consensus 177 ~~~p~~a~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~---~~~~dla~~l~~p 252 (719)
|+||+.++.++ +.. +..++..+.++. ..+|++|||||||+++|...+ .+++|||+.+++|
T Consensus 289 ~~sp~~a~n~~-~d~~~~~~~~~~~~~~---------------~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~P 352 (476)
T PRK06278 289 KMTKYNSIKIG-DRGWSDVEEFLEFVKN---------------SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFP 352 (476)
T ss_pred ccCChHHHhhc-CCcccCHHHHHHHHHh---------------cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCC
Confidence 99999999976 443 555555554321 138999999999999995433 5899999999999
Q ss_pred EEEEEcCCCChHHHHHHHH----HHHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC-CCcEEecCC
Q 005009 253 GILVGDGRLGGISGTISAY----ESLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN-RVPVLVLPP 312 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~----~~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~-~~pvlglP~ 312 (719)
||||++.++|++++++..+ +++++++++|.|||+|++ +..+.+.+++.++. ++||+|+|+
T Consensus 353 VILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 353 VYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 9999999999999998854 567778999999999999 44556666666655 999999655
No 95
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.91 E-value=4.2e-24 Score=231.35 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=145.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (719)
+.|+|+||+||+|||+||+||+++|. ++|++|.+|| -+|++.|+.|+....
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-----~rg~~VqpfK----vGPDYIDP~~H~~at-------------------- 51 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-----RRGLKVQPFK----VGPDYIDPGYHTAAT-------------------- 51 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHH-----hcCCcccccc----cCCCccCchhhhHhh--------------------
Confidence 46999999999999999999999994 8999999999 357889999876554
Q ss_pred hhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHH
Q 005009 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (719)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v 197 (719)
+..+.|++.| .+..+.|
T Consensus 52 -----------------------------------------------G~~srNLD~~----------------mm~~~~v 68 (451)
T COG1797 52 -----------------------------------------------GRPSRNLDSW----------------MMGEEGV 68 (451)
T ss_pred -----------------------------------------------CCccCCCchh----------------hcCHHHH
Confidence 3366888888 3567888
Q ss_pred HHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCC---CCchhHHHHhhcCCCEEEEEcCCCC--hHHHHHHHHH
Q 005009 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLG--GISGTISAYE 272 (719)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~---~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~~~ 272 (719)
++.|.+..++ .|+.||||++|++++.. +..+.++||+.|++|||||+|++.. ++..++..+.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 8888887765 89999999999999833 3579999999999999999997744 3444445555
Q ss_pred HHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC--CCcEEe-cCCCCCCCcc
Q 005009 273 SLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~--~~pvlg-lP~~~~~~~~ 319 (719)
.+. .+++|.|||+|++ ++.|++.+++.++. ++||+| ||+.+.+.-+
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 554 4589999999999 68899999988875 799999 9999887754
No 96
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.91 E-value=9.9e-24 Score=234.52 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=133.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (719)
|+.|||+||+||+|||+||++|+++|+ ++|.+|.+||| | ++..|+.++...+ +.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~-----~~g~~v~~~K~---G-pd~iD~~~~~~~~-g~---------------- 54 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE-----DAGYAVQPAKA---G-PDFIDPSHHEAVA-GR---------------- 54 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEEee---C-CCCCCHHHHHHHh-CC----------------
Confidence 568999999999999999999999994 88999999997 4 5567888776553 21
Q ss_pred hhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHH
Q 005009 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (719)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (719)
.+.|+..| .+ ..+.
T Consensus 55 --------------------------------------------------~~~nld~~-------~~---------~~~~ 68 (433)
T PRK13896 55 --------------------------------------------------PSRTLDPW-------LS---------GEDG 68 (433)
T ss_pred --------------------------------------------------CcccCChh-------hC---------CHHH
Confidence 11222222 11 2344
Q ss_pred HHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh--HHHHHHHHHHH
Q 005009 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (719)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~--i~~~~~~~~~l 274 (719)
|.+.+.+ . .+|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~---~------------~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR---G------------EGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh---h------------cCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 5554432 1 2899999999999986 34689999999999999999999995 66668887544
Q ss_pred Hh---CCCcEEEEEEccC-CCCCHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 005009 275 KL---RGYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 275 ~~---~~~~v~gvi~N~~-~~~~~~~l~~~~~~~~pvlg-lP~~~~~~~~ 319 (719)
.. ++++|.|||+|++ +..+.+.+++.+++++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 43 5799999999999 45567777877766799999 9998876543
No 97
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.91 E-value=5.1e-24 Score=241.00 Aligned_cols=194 Identities=15% Similarity=0.043 Sum_probs=139.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc----cCCCC----CChHHHHHHhcCCCccccCCCcccc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ----TGYPH----DSDSRFLFTKLPSLSLRRNFPSSLI 111 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~----~g~~~----~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (719)
|||+||+|+||||+||++||+.|+ ++|++|+||||++ ++... .++++.++..++++ .|.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~-----~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~-------~~~- 67 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA-----RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI-------EPS- 67 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH-----hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-------Cch-
Confidence 699999999999999999999994 8999999999984 22111 23344443333221 112
Q ss_pred ccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccC-------------c
Q 005009 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEA-------------V 178 (719)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 178 (719)
..+||+.|++| +
T Consensus 68 -------------------------------------------------------~~~nPv~lk~~~~~~s~~i~~g~~~ 92 (475)
T TIGR00313 68 -------------------------------------------------------VHMNPILLKPKGNFTSQVIVHGRAV 92 (475)
T ss_pred -------------------------------------------------------hccCCEEeCcCCCCcCcEEEcCccc
Confidence 23555666553 4
Q ss_pred ChHHHHhHhc-CCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCC--CCCCCchhHHHHhhcCCCEEE
Q 005009 179 SPHLAAERES-GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGIL 255 (719)
Q Consensus 179 ~p~~a~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~--p~~~~~~~~dla~~l~~pvil 255 (719)
+|+.+.+... +..+..++|.+.+.++.+. +|++||||+||+++ +...+.+++++|+.+++||||
T Consensus 93 ~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~-------------~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVIL 159 (475)
T TIGR00313 93 GDMNYQEYYKNKVDFFLKAIKESLEILARE-------------YDYVVIEGAGSPAEINLLKRDLANMRIAELANADAIL 159 (475)
T ss_pred CcCCHHHHhhhhhHHHHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEE
Confidence 4554432210 3346688888888877644 99999999999987 244678999999999999999
Q ss_pred EEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 256 VGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 256 V~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
|++.++| .+++++.+++.++.. +..+.|||+|++... +.+.|++++ ++||+| +|+.+.+
T Consensus 160 V~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~--gipvLG~ip~~~~l 227 (475)
T TIGR00313 160 VADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELT--GIPVLGVLPYDENL 227 (475)
T ss_pred EEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhh--CCCEEEEecCCCcC
Confidence 9998887 567888888888764 368999999999422 233344444 899999 9998765
No 98
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.90 E-value=5.1e-23 Score=232.00 Aligned_cols=177 Identities=18% Similarity=0.253 Sum_probs=134.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccch
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (719)
+|+.|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++...+ +.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---G-pd~~d~~~~~~~~-g~--------------- 56 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---G-PDYIDPAYHTAAT-GR--------------- 56 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---C-CCcccHHHHHHHh-CC---------------
Confidence 4789999999999999999999999994 88999999998 4 4556777665432 11
Q ss_pred hhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHH
Q 005009 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (719)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (719)
.+.++..| ....+
T Consensus 57 ---------------------------------------------------~~~~ld~~----------------~~~~~ 69 (451)
T PRK01077 57 ---------------------------------------------------PSRNLDSW----------------MMGEE 69 (451)
T ss_pred ---------------------------------------------------CcccCCce----------------eCCHH
Confidence 01111112 12466
Q ss_pred HHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCC---CCCchhHHHHhhcCCCEEEEEcCCCC--hHHHHHHH
Q 005009 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLG--GISGTISA 270 (719)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~---~~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~ 270 (719)
.|.+.+.++.++ +|++||||+||++++. .++.+++|||+.+++|||||++.+.. ++++++.+
T Consensus 70 ~v~~~~~~~~~~-------------~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQG-------------ADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhccc-------------CCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 788888876544 9999999999999964 35688999999999999999998864 45566666
Q ss_pred HHHHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC-CCcEEe-cCCCCCCCc
Q 005009 271 YESLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN-RVPVLV-LPPLPQDSS 318 (719)
Q Consensus 271 ~~~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~-~~pvlg-lP~~~~~~~ 318 (719)
+..+ .+++++.|||+|++ ...+...+.+.+++ ++||+| ||+.+.+..
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~ 186 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALAL 186 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCC
Confidence 6665 34799999999999 33345555666654 899999 999987653
No 99
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.90 E-value=6.9e-23 Score=230.69 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=129.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchhhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (719)
+|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++...+ +.
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~-----~~G~~V~~fK~---g-~d~~D~~~~~~~~-g~------------------ 52 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALS-----RRKLRVQPFKV---G-PDYIDPMFHTQAT-GR------------------ 52 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCceeEEcc---C-CCCCCHHHHHHHh-CC------------------
Confidence 4899999999999999999999994 88999999998 3 4456777654443 11
Q ss_pred hhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHHH
Q 005009 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (719)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v~ 198 (719)
.+.++..| .++.++|.
T Consensus 53 ------------------------------------------------~~~~ld~~----------------~~~~~~i~ 68 (449)
T TIGR00379 53 ------------------------------------------------PSRNLDSF----------------FMSEAQIQ 68 (449)
T ss_pred ------------------------------------------------chhhCCcc----------------cCCHHHHH
Confidence 00111112 13577888
Q ss_pred HHHHHHHhccccccccccccCcCcEEEEeCCCCCC---CCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH--H
Q 005009 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE--S 273 (719)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~---~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~--~ 273 (719)
+.+.++.++ +|++||||+||++ +|+.+..+++|||+.+++|||||++.+ ++++++.++. .
T Consensus 69 ~~~~~~~~~-------------~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKG-------------TDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhccc-------------CCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 888887654 8999999999999 566667899999999999999999987 4666666643 1
Q ss_pred -HHhCCCcEEEEEEccCCC-CCHHHHHHhhcC--CCcEEe-cCCCCCCCcc
Q 005009 274 -LKLRGYDVVAVVFEDHGL-VNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 274 -l~~~~~~v~gvi~N~~~~-~~~~~l~~~~~~--~~pvlg-lP~~~~~~~~ 319 (719)
...++++|.|||+|++.. .+...+.+.+++ ++||+| ||+.+++..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCccccCCC
Confidence 124689999999999942 333333333332 899999 9999877643
No 100
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.89 E-value=1.1e-22 Score=226.33 Aligned_cols=211 Identities=14% Similarity=0.050 Sum_probs=162.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++|+|+| |.+||.+.||+|++|+++|++++++.. .....++...+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 8999999 899999669999999999999987642 1123456789999999999873 68999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
+|++...+.+ +.++|.++..|||++..++..++...
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~------------------------ 155 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEK------------------------ 155 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeE------------------------
Confidence 9999541211 23689999999999888776543210
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
.. + +++|. +.+++.+.. ..+.++++|++|++ ++.+|.
T Consensus 156 ----~~--~--------------~~~d~------------------~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 156 ----RI--F--------------RHNDP------------------ADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred ----EE--e--------------CCCCH------------------HHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 00 1 12331 234445542 11346789999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCCC--ccee--eehhccC--CCccchheeEeCHHH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv~--PDIv--tlgK~Lg--gG~~Plsavl~~~~i 707 (719)
+.+ +++++++|++||++||+||+|+ |+ |++|..+. +++++. +||+ ||+|++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~-~~~~~~~~~~i~~~tlsKa~g~~GG~-----~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIA-EREGLADRLTIIEGTLAKAFGVMGGY-----ITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchh-hhcCCCCCCeEEEEeCchhhcccCce-----eeCCHHH
Confidence 988 9999999999999999999997 87 99998664 777775 6887 9999998 665 6788888
Q ss_pred HhhhcC
Q 005009 708 FDSFVG 713 (719)
Q Consensus 708 ~~~~~~ 713 (719)
.+.+..
T Consensus 263 ~~~l~~ 268 (406)
T PRK13393 263 CDFIRS 268 (406)
T ss_pred HHHHHH
Confidence 887654
No 101
>PLN02822 serine palmitoyltransferase
Probab=99.89 E-value=1.5e-22 Score=229.99 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=168.8
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~ 451 (719)
..++.+++|. +++ .+|+ +||||.++ .++|...||+|++|+++++++++..+. ....++.+.+|+++
T Consensus 93 ~~~~~~~~G~--~i~-~~G~----~~id~~s~---~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~ 162 (481)
T PLN02822 93 PPVLESAAGP--HTI-INGK----DVVNFASA---NYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETK 162 (481)
T ss_pred CCceecCCCC--eEE-ECCc----eEEEeECC---CcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHH
Confidence 3467777776 677 7999 99999984 456775599999999999999876321 12457889999999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|+++++.. +.++|++ |..++.+|++.. .+|.++|.++..||+++..++.+++...
T Consensus 163 La~~~~~~--~~i~~s~-G~~a~~sai~a~----------------------~~~gd~Ii~d~~~H~s~~~~~~ls~~~~ 217 (481)
T PLN02822 163 IAKFLGTP--DSILYSY-GLSTIFSVIPAF----------------------CKKGDIIVADEGVHWGIQNGLYLSRSTI 217 (481)
T ss_pred HHHHhCCC--CEEEECC-HHHHHHHHHHHh----------------------CCCCCEEEEeCCccHHHHHHHHHcCCeE
Confidence 99999853 4666665 555788877744 2345788899999999877777764210
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
+.+ ++||. +.++..+++.
T Consensus 218 ------------------------------~~~--------------~~nd~------------------~~l~~~l~~~ 235 (481)
T PLN02822 218 ------------------------------VYF--------------KHNDM------------------ESLRNTLEKL 235 (481)
T ss_pred ------------------------------EEE--------------CCCCH------------------HHHHHHHHHH
Confidence 001 13442 1122222221
Q ss_pred CCC-CCCCcE-EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc--CccccCccccccccCC---Ccce
Q 005009 612 PGL-KVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDI 684 (719)
Q Consensus 612 ~~~-~~~~~i-AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT--GfGRtG~~~a~e~~gv---~PDI 684 (719)
... ....++ ++||+|++ ++..|.+.+ +++|+++|++||++||+||+++ .+||+|++ .++++|+ .|||
T Consensus 236 ~~~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~di 309 (481)
T PLN02822 236 TAENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDI 309 (481)
T ss_pred hhhhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeE
Confidence 000 001234 89999998 999999988 9999999999999999999998 57889987 5789998 7999
Q ss_pred ee--ehhccC--CCccchheeEeCHHHHhhhcC
Q 005009 685 AC--YGKLLT--GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 685 vt--lgK~Lg--gG~~Plsavl~~~~i~~~~~~ 713 (719)
++ |||++| ||| +++++++++.+..
T Consensus 310 i~~s~sKalg~~GG~-----i~g~~~ii~~~~~ 337 (481)
T PLN02822 310 ITAAMGHALATEGGF-----CTGSARVVDHQRL 337 (481)
T ss_pred EEecchhhhhhCCeE-----EEcCHHHHHHHHh
Confidence 88 889998 775 8899999998753
No 102
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.87 E-value=2e-21 Score=215.94 Aligned_cols=210 Identities=15% Similarity=0.064 Sum_probs=159.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC---C-CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF---P-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~---~-~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
+++||+| |++||++.||+|++|+.++++++++... . ...++...+|+++|+++.+ .+++++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g---~~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG---KEAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC---CCcEEEECcHHHHHH
Confidence 8999999 8999999999999999999999865421 1 1247789999999999887 367899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.|++++. .+ . +..+|..+..+|++...++.+++...
T Consensus 121 ~ai~~l~-~~--~-----------------~~~~i~~~~~~h~s~~~~~~~~~~~~------------------------ 156 (407)
T PRK09064 121 ATLSTLA-KL--I-----------------PDCVIFSDELNHASMIEGIRRSRCEK------------------------ 156 (407)
T ss_pred HHHHHHh-CC--C-----------------CCCEEEEeCcchHHHHHHHHHcCCcE------------------------
Confidence 9999883 21 1 13567777777887665554432110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
..+ +++| .+.+++.++. ..++++.+|++|++ ++..|.
T Consensus 157 ------~~~--------------~~~d------------------~~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 157 ------HIF--------------RHND------------------VAHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred ------EEE--------------CCCC------------------HHHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 000 1222 1345666653 12246789999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCC--Cccee--eehhccC--CCccchheeEeCHHH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsavl~~~~i 707 (719)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .+++++ .|||+ ||||++| ||| +++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGY-----IAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCce-----EecCHHH
Confidence 887 9999999999999999999997 7 69999876 567776 58998 9999998 665 7889998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 264 ~~~l~ 268 (407)
T PRK09064 264 VDAVR 268 (407)
T ss_pred HHHHH
Confidence 88764
No 103
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.86 E-value=5.1e-21 Score=212.44 Aligned_cols=211 Identities=18% Similarity=0.131 Sum_probs=160.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++++|.| |++||.+.||+|++|+++|++++++... ....++...+|+++|+++.+. +.+++++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~sG~~an~ 119 (402)
T TIGR01821 46 DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFTSGYVAND 119 (402)
T ss_pred eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEECchHHHHH
Confidence 8999999 9999999999999999999999876431 123577899999999999873 57899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.|++++. .+ .+..+|..+..||+++..++..++...
T Consensus 120 ~ai~~l~-~~-------------------~~~~~v~~~~~~h~s~~~~~~~~g~~~------------------------ 155 (402)
T TIGR01821 120 ATLATLA-KI-------------------IPGCVIFSDELNHASMIEGIRHSGAEK------------------------ 155 (402)
T ss_pred HHHHHhh-CC-------------------CCCCEEEEcchHhHHHHHHHHHcCCeE------------------------
Confidence 9999982 21 113578888889998877665543210
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
.. + +++|. +.+++.++. ..++++.+|++|++ ++..|.
T Consensus 156 ----~~--~--------------~~~d~------------------~~l~~~l~~----~~~~~~~~v~~e~~-~~~~G~ 192 (402)
T TIGR01821 156 ----FI--F--------------RHNDV------------------AHLEKLLQS----VDPNRPKIIAFESV-YSMDGD 192 (402)
T ss_pred ----EE--E--------------CCCCH------------------HHHHHHHHh----ccCCCCeEEEEcCC-CCCCCC
Confidence 00 0 02221 345555543 12235789999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCC--Cccee--eehhccC--CCccchheeEeCHHH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsavl~~~~i 707 (719)
+.+ +++|+++|++||++||+||+|+ | +|++|.+. .+++++ .|||+ |++|++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----i~~~~~~ 262 (402)
T TIGR01821 193 IAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGVVGGY-----IAASRKL 262 (402)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhccCCce-----eecCHHH
Confidence 987 9999999999999999999998 5 46776643 467776 57888 9999998 565 7889999
Q ss_pred HhhhcC
Q 005009 708 FDSFVG 713 (719)
Q Consensus 708 ~~~~~~ 713 (719)
++.+..
T Consensus 263 ~~~l~~ 268 (402)
T TIGR01821 263 IDAIRS 268 (402)
T ss_pred HHHHHH
Confidence 887753
No 104
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.85 E-value=8.2e-21 Score=223.90 Aligned_cols=185 Identities=16% Similarity=0.106 Sum_probs=138.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccch
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (719)
||++|||+||+|++|||+||+||+++|+ ++|++|+|||||++++- +........
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~---~~~~~~~~~------------------ 54 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL---TMSEVEALL------------------ 54 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC---CHHHHHHHH------------------
Confidence 4679999999999999999999999994 88999999999998721 111111100
Q ss_pred hhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHH
Q 005009 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (719)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (719)
. +.+.....+
T Consensus 55 -------------------------------------------------------------------~---~~~~~~~~~ 64 (684)
T PRK05632 55 -------------------------------------------------------------------A---SGQLDELLE 64 (684)
T ss_pred -------------------------------------------------------------------h---ccCChHHHH
Confidence 0 001123467
Q ss_pred HHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh----HHHHHHHH
Q 005009 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAY 271 (719)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~----i~~~~~~~ 271 (719)
+|.+.|.++.++ +|++||||++|+........+|+|||+.|++|||||++.+.++ ++++..+.
T Consensus 65 ~I~~~~~~l~~~-------------~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~ 131 (684)
T PRK05632 65 EIVARYHALAKD-------------CDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAA 131 (684)
T ss_pred HHHHHHHHhccC-------------CCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHH
Confidence 788888776543 9999999998777655556789999999999999999999887 57778888
Q ss_pred HHHH-hCCCcEEEEEEcc--CCCCCHHHHHHhh------------------cC-CCcEEe-cCCCCCCCcchhhhhhhhc
Q 005009 272 ESLK-LRGYDVVAVVFED--HGLVNEVPLMSYL------------------RN-RVPVLV-LPPLPQDSSNDLMEWFDES 328 (719)
Q Consensus 272 ~~l~-~~~~~v~gvi~N~--~~~~~~~~l~~~~------------------~~-~~pvlg-lP~~~~~~~~~~~~~l~~~ 328 (719)
+.+. .++.+++|||+|+ +.......+.+.+ .. ++|++| ||+.+.+.++++.+..+.+
T Consensus 132 ~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~i~~~L 211 (684)
T PRK05632 132 SSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVIDIAKHL 211 (684)
T ss_pred HHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHHHHHHc
Confidence 8887 7889999999999 4333333333322 22 899999 9999999988666555544
Q ss_pred h
Q 005009 329 H 329 (719)
Q Consensus 329 ~ 329 (719)
.
T Consensus 212 ~ 212 (684)
T PRK05632 212 G 212 (684)
T ss_pred C
Confidence 3
No 105
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.85 E-value=1.6e-20 Score=178.12 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=78.9
Q ss_pred cEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------CHH
Q 005009 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------NEV 295 (719)
Q Consensus 222 d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~------~~~ 295 (719)
|++|||||||+++|...+.+++|+++.+++|+|+|++.++|+++|++.+++.++.+|+.+.|||.|+.... +.+
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~ 119 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE 119 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998321 245
Q ss_pred HHHHhhcCCCcEEe-cC
Q 005009 296 PLMSYLRNRVPVLV-LP 311 (719)
Q Consensus 296 ~l~~~~~~~~pvlg-lP 311 (719)
.+.+.+ ++|++| +|
T Consensus 120 ~i~~~~--gip~LG~IP 134 (134)
T cd03109 120 TIERLT--GIPVLGIVP 134 (134)
T ss_pred HHHHhc--CCCEEEeCC
Confidence 555555 999999 76
No 106
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.84 E-value=1.6e-20 Score=210.30 Aligned_cols=227 Identities=9% Similarity=0.020 Sum_probs=174.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++|||.| |++||.++||+|++++.+.+++++.... ....+..+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999999 9999999999999999999999986531 22347888999999999998 478999999999999
Q ss_pred HHHHHHHHHhhc---cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 476 IALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 476 ~AlKlA~r~~~~---~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
+++.... .... ..+ -+..++..+|..+...|.+...++.++... ..
T Consensus 177 ~~i~aL~-~~~~~~~~~~----------~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~---~~----------------- 225 (476)
T PLN02955 177 AAMVAIG-SVASLLAASG----------KPLKNEKVAIFSDALNHASIIDGVRLAERQ---GN----------------- 225 (476)
T ss_pred HHHHHHh-hccccccccc----------cccCCCCcEEEEeccchHHHHHHHHhcccc---CC-----------------
Confidence 9998751 1000 000 001235678999999999988888776321 00
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
..... ++|||. +.|++.|+.. .++.+.||+|+| .++
T Consensus 226 ------a~~~~--------------f~HND~------------------~~Le~~L~~~-----~~~~~~Vv~EgV-~Sm 261 (476)
T PLN02955 226 ------VEVFV--------------YRHCDM------------------YHLNSLLSSC-----KMKRKVVVTDSL-FSM 261 (476)
T ss_pred ------ceEEE--------------eCCCCH------------------HHHHHHHHhC-----CCCceEEEEeCC-CCC
Confidence 00011 126764 5677777642 345578999998 999
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCCcce----eeehhccC--CCccchheeEeC
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLAT 704 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~PDI----vtlgK~Lg--gG~~Plsavl~~ 704 (719)
.|.+.| +++|+++|++||++||+||+|+ +|+.|+ .+..+++|+.||+ .||||++| ||| ++++
T Consensus 262 dGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs 331 (476)
T PLN02955 262 DGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACS 331 (476)
T ss_pred CCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecH
Confidence 999998 9999999999999999999995 667777 5667799998877 59999999 786 9999
Q ss_pred HHHHhhhcCCCCC
Q 005009 705 NAVFDSFVGDSKK 717 (719)
Q Consensus 705 ~~i~~~~~~~~~~ 717 (719)
+++++.+....++
T Consensus 332 ~~~~~~l~~~~~~ 344 (476)
T PLN02955 332 KKWKQLIQSRGRS 344 (476)
T ss_pred HHHHHHHHHhCCC
Confidence 9999988765544
No 107
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.84 E-value=3.2e-20 Score=203.56 Aligned_cols=220 Identities=16% Similarity=0.111 Sum_probs=176.6
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEe
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFS 467 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~ 467 (719)
.+|+ +++||+| |++||.+.||+|++|+++++++++.... ....++.+.+|+++|+++.| .++++++
T Consensus 36 ~~~~----~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f 105 (388)
T COG0156 36 ADGR----KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLF 105 (388)
T ss_pred cCCc----eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEE
Confidence 3477 9999999 9999999999999999999999765431 23458899999999999998 4789999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
+||..||.+++-.. .++.++|..+.-.|.+...+..+++...++
T Consensus 106 ~SGy~AN~~~i~~l----------------------~~~~dli~~D~lnHASiidG~rls~a~~~~-------------- 149 (388)
T COG0156 106 SSGFVANLGLLSAL----------------------LKKGDLIFSDELNHASIIDGIRLSRAEVRR-------------- 149 (388)
T ss_pred cccchhHHHHHHHh----------------------cCCCcEEEEechhhhhHHHHHHhCCCcEEE--------------
Confidence 99999999999887 345689999999999998888887543211
Q ss_pred cCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
..+||. +.||+.|++.. ..++ +-..|++|.
T Consensus 150 ------------------------------f~HnD~------------------~~Le~~l~~~~-~~~~-~~~~Ivteg 179 (388)
T COG0156 150 ------------------------------FKHNDL------------------DHLEALLEEAR-ENGA-RRKLIVTEG 179 (388)
T ss_pred ------------------------------ecCCCH------------------HHHHHHHHhhh-ccCC-CceEEEEec
Confidence 114552 66788887531 0122 567999999
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCCcc---ee--eehhccCC--Cccch
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---IA--CYGKLLTG--GVIPL 698 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~PD---Iv--tlgK~Lgg--G~~Pl 698 (719)
| +++.|.+.| |++|.+||+|||++|++||+|. +|-.|+ .+.++++|+.|+ |+ ||||++|+ ||
T Consensus 180 V-fSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~--- 250 (388)
T COG0156 180 V-FSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY--- 250 (388)
T ss_pred c-ccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce---
Confidence 8 999999999 9999999999999999999994 555554 355677898765 43 89999984 55
Q ss_pred heeEeCHHHHhhhcCCCCCC
Q 005009 699 AATLATNAVFDSFVGDSKKR 718 (719)
Q Consensus 699 savl~~~~i~~~~~~~~~~~ 718 (719)
+++++.+.+.+....++|
T Consensus 251 --v~g~~~~~d~L~~~ar~~ 268 (388)
T COG0156 251 --IAGSAALIDYLRNRARPF 268 (388)
T ss_pred --eeCcHHHHHHHHHhCCce
Confidence 999999999998766654
No 108
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.84 E-value=1.3e-21 Score=215.67 Aligned_cols=211 Identities=19% Similarity=0.148 Sum_probs=154.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc--------cCCCCCChHHHHHHhcCCCccccCCCc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--------TGYPHDSDSRFLFTKLPSLSLRRNFPS 108 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~--------~g~~~~~d~~~~~~~~~~~~~~~~~~~ 108 (719)
|+.+||.||.+++|||++++||||.|. ++|++|++|||.. .++.+..-+++++..++++ .
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~-----~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i-------~ 68 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILA-----RRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGI-------E 68 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHH-----hcCCccCCCchhhcccccEECCCCcEEehhhhHHHHHcCC-------C
Confidence 357999999999999999999999994 9999999999943 3344557789999999888 7
Q ss_pred cccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHh-Hh
Q 005009 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RE 187 (719)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~~ 187 (719)
|++.||++|+++.... .+|+...+.+.. -..+.+ ..
T Consensus 69 p~v~mNPvLLKP~sd~----------------------------~sQVIv~G~~~G---------------~~s~~~yy~ 105 (486)
T COG1492 69 PSVHMNPVLLKPCSDT----------------------------GSQVIVMGKDIG---------------RKSAVEYYQ 105 (486)
T ss_pred CccccCCEEEeecCCC----------------------------ceEEEEeccccc---------------ccChHHHHH
Confidence 9999999998876321 222222222221 111111 11
Q ss_pred cCCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCC--CCCCchhHHHHhhcCCCEEEEEcCCCCh-H
Q 005009 188 SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLPGILVGDGRLGG-I 264 (719)
Q Consensus 188 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p--~~~~~~~~dla~~l~~pvilV~~~~~g~-i 264 (719)
.+.......+.+++.++.+. +|+|++||||+-... -..+..|+.+|+..++|||||+|+..|+ +
T Consensus 106 ~~~~~l~~~v~~s~~~l~~~-------------~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvf 172 (486)
T COG1492 106 EGKGLLWVAVKESLERLDRE-------------YDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVF 172 (486)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------------ccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeeccccee
Confidence 02234567777887777655 999999999943332 2356899999999999999999977765 4
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEccC-C-----CCCHHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 265 SGTISAYESLKLR-GYDVVAVVFEDH-G-----LVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 265 ~~~~~~~~~l~~~-~~~v~gvi~N~~-~-----~~~~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+...+++.|... .-.|.|+|+|++ + .+..++|++.+ ++|||| +||++..-
T Consensus 173 Asl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~t--g~~vlGv~P~~~~~~ 231 (486)
T COG1492 173 ASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELT--GVPVLGVLPYLKDAL 231 (486)
T ss_pred eeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhh--CCeeEeecccccccc
Confidence 5555578877643 247999999998 2 34577777777 999999 99987643
No 109
>PRK07179 hypothetical protein; Provisional
Probab=99.78 E-value=3.6e-18 Score=190.10 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=151.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc--CCCC--CChHHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPEN--VYEPALECAE 450 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~--~~~~--~~~~~~~Lae 450 (719)
.++++.+++| .+++|.+|| .|||+. + ||+|++|+.+|+++++... ...+ ..+...+|++
T Consensus 44 ~~~~~~~~~g--~~~~~~~~~----~YL~l~----------~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~ 106 (407)
T PRK07179 44 KHLVLGKTPG--PDAIILQSN----DYLNLS----------G-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK 106 (407)
T ss_pred ceEEeecCCC--CcEEEeecC----CccCCC----------C-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH
Confidence 3556655555 478999999 999987 4 9999999999998874221 1112 2357889999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|+++++. +.++|++||++||+.|++... . + .+.|..+.-.|-+...++...+.
T Consensus 107 ~la~~~g~---~~~~~~~sG~~An~~~l~~l~-----~---------------~--g~~v~~~~~~h~s~~~~~~~~g~- 160 (407)
T PRK07179 107 KLAAFTGF---ESCLLCQSGWAANVGLLQTIA-----D---------------P--NTPVYIDFFAHMSLWEGVRAAGA- 160 (407)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----C---------------C--CCEEEEECCcCHHHHHHHHHCCC-
Confidence 99999873 678999999999999999771 1 1 12233344445433322221110
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
...+++ ++| .+.+++.+.+
T Consensus 161 -----------------------------~~~~~~--------------~~d------------------~~~l~~~l~~ 179 (407)
T PRK07179 161 -----------------------------QAHPFR--------------HND------------------VDHLRRQIER 179 (407)
T ss_pred -----------------------------eEEEec--------------CCC------------------HHHHHHHHHh
Confidence 001111 222 2456666652
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCCC--cceee
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCV--PDIAC 686 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv~--PDIvt 686 (719)
.+.++|++|++ ++..|.+.| +++|.++|++||++||+||+|+. +|++|..+ ++++++. +|+++
T Consensus 180 -------~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~ 246 (407)
T PRK07179 180 -------HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFIT 246 (407)
T ss_pred -------cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEE
Confidence 13578999998 999999988 89999999999999999999973 45666644 4567774 48864
Q ss_pred --ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 --YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 --lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|++|+ ++|++++++++++.+.
T Consensus 247 ~S~sK~~g~---~~G~l~~~~~~~~~~~ 271 (407)
T PRK07179 247 ASLAKAFAG---RAGIITCPRELAEYVP 271 (407)
T ss_pred eechHhhhc---cCeEEEeCHHHHHHHH
Confidence 7999975 4789999999877664
No 110
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=185.72 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=145.7
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC----CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHH
Q 005009 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 402 LD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~----~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~A 477 (719)
|||.| +++||.+.||++++++.+++++++..+.. ...+....+|+++|+++.+. +..++++||+.|+-++
T Consensus 1 ~~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~ 74 (392)
T PLN03227 1 LNFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSST 74 (392)
T ss_pred CCCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 46666 88999999999999999999987643311 11256788999999999874 5789999999999977
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
+... .+ +.+.|..+..-|+++..++.+++..
T Consensus 75 i~~l-----~~-----------------~GD~Vl~~~~~h~s~~~~~~l~~~~--------------------------- 105 (392)
T PLN03227 75 VAAF-----AK-----------------RGDLLVVDRGVNEALLVGVSLSRAN--------------------------- 105 (392)
T ss_pred HHHh-----CC-----------------CCCEEEEeccccHHHHHHHHHcCCe---------------------------
Confidence 7654 11 2244556666677665554433210
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC---CCCCCcEEEEEEccccccCCc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG---LKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~---~~~~~~iAAvIvEPViqg~gG 634 (719)
... ++++|.+ + .+.+.+.+..... .....+...|++||+ ++.+|
T Consensus 106 ---~~~--------------~~~~d~~----------~-----l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G 152 (392)
T PLN03227 106 ---VRW--------------FRHNDMK----------D-----LRRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTG 152 (392)
T ss_pred ---EEE--------------eCCCCHH----------H-----HHHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCC
Confidence 000 0123321 0 0111112211000 001235678999998 99999
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEecccc--CccccCccccccccCCCc----ceeeehhccCCCccch-heeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPL-AATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT--GfGRtG~~~a~e~~gv~P----DIvtlgK~LggG~~Pl-savl~~~~i 707 (719)
.+.+ +++++++|++||++||+||+++ ++|++|. |+++++|+.| ||++++++ .|+.|+ |++++++++
T Consensus 153 ~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls--k~~g~~gg~v~~~~~~ 225 (392)
T PLN03227 153 TLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE--NAFGSVGGMTVGSEEV 225 (392)
T ss_pred cccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech--hhhhccCcEEecCHHH
Confidence 9988 9999999999999999999997 4566666 6889999999 99987733 332255 456789998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 226 ~~~~~ 230 (392)
T PLN03227 226 VDHQR 230 (392)
T ss_pred HHHHH
Confidence 87664
No 111
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.74 E-value=6.1e-17 Score=178.08 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=159.0
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~ 451 (719)
|.++.+++|. |++ .+|+ +||||.+ +..+||..||++++++.+++.++.+.. ......+...+++++
T Consensus 17 ~~~~~~~~g~--~~~-~~g~----~~id~~~---~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 86 (385)
T TIGR01825 17 IRVLESAQGP--RVR-VNGK----EVINLSS---NNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEK 86 (385)
T ss_pred ccccccCCCc--eEE-ECCc----eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHH
Confidence 5577777776 788 9999 9999987 356899339999999999998764321 122346778899999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|++..+. +..++.+||++|++.|++... . +.+.|..+..+|+....++.+.+...
T Consensus 87 l~~~~g~---~~~i~~~sG~~a~~~a~~~~~----~------------------~gd~vi~~~~~~~~~~~~~~~~g~~~ 141 (385)
T TIGR01825 87 LAKFKKT---EAALVFQSGFNTNQGVLSALL----R------------------KGDIVLSDELNHASIIDGLRLTKATK 141 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHhC----C------------------CCCEEEEEccccHHHHHHHHhcCCce
Confidence 9998773 467888999999999888661 1 12456677888887665544432110
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
..++ +.| .+.+++.+.+
T Consensus 142 ------------------------------~~~~--------------~~d------------------~~~l~~~l~~- 158 (385)
T TIGR01825 142 ------------------------------KIYK--------------HAD------------------MDDLDRVLRE- 158 (385)
T ss_pred ------------------------------EEeC--------------CCC------------------HHHHHHHHHh-
Confidence 0000 111 1234555543
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCCCcce----e
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVPDI----A 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv~PDI----v 685 (719)
....+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ | ++++|. +...++++.+|. .
T Consensus 159 ---~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 229 (385)
T TIGR01825 159 ---NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVG 229 (385)
T ss_pred ---hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEE
Confidence 11246789999997 898898776 8999999999999999999995 4 566665 334556666663 5
Q ss_pred eehhccCCCccchheeEeCHHHHhhhc
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|++|+ +.|.+++++++++.+.
T Consensus 230 s~sK~~~~---~gG~~~~~~~~~~~~~ 253 (385)
T TIGR01825 230 TLSKAIGV---VGGYAAGHKELIEYLK 253 (385)
T ss_pred eccHHhhc---CCCEEecCHHHHHHHH
Confidence 89999963 2255788898888774
No 112
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.73 E-value=1e-16 Score=175.75 Aligned_cols=224 Identities=16% Similarity=0.127 Sum_probs=157.2
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~ 451 (719)
.++++++|. |+++ +|+ +|||+.++ .++|| . ||+|++|+++++.++..... .....+...+++++
T Consensus 24 ~~~~~~~g~--~~~~-~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (385)
T PRK05958 24 RPREGGAGR--WLVV-DGR----RMLNFASN---DYLGLAR-HPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEE 92 (385)
T ss_pred cccccCCCc--eeEe-CCc----eEEEeeCC---CcccCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHH
Confidence 367777776 7887 999 99999995 46898 6 89999999999988653211 11235678899999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
++++.+. +.++++++|++++..+++.. . ++.+.|.+...+|+.+..++.+.+..
T Consensus 93 la~~~~~---~~~i~~~~g~~~~~~~l~~~----~------------------~~gd~V~~~~~~~~~~~~~~~~~g~~- 146 (385)
T PRK05958 93 LAEWFGA---ERALLFSSGYAANLAVLTAL----A------------------GKGDLIVSDKLNHASLIDGARLSRAR- 146 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHh----C------------------CCCCEEEEeCccCHHHHHHHHhcCCc-
Confidence 9998863 57788899999999887654 1 12345667778898777665544311
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
...+| .+| .+.+++.+..
T Consensus 147 -----------------------------~~~~~--------------~~d------------------~~~l~~~i~~- 164 (385)
T PRK05958 147 -----------------------------VRRYP--------------HND------------------VDALEALLAK- 164 (385)
T ss_pred -----------------------------eEEeC--------------CCC------------------HHHHHHHHHh-
Confidence 00011 111 1445666652
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccC--CCcc---e
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG--CVPD---I 684 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~g--v~PD---I 684 (719)
...+.++++++++ +...|...+ +++|.++|++||+++|+||+|+ | +|++|..+. ..++ ..+| +
T Consensus 165 ----~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~-~~~~~~~~~~~i~~ 234 (385)
T PRK05958 165 ----WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLA-AEAGLAGEPDVILV 234 (385)
T ss_pred ----ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchH-HhhCCCCCCceEEE
Confidence 1234789999997 888887766 9999999999999999999995 4 456665442 2223 3567 5
Q ss_pred eeehhccCCCccchheeEeCHHHHhhhc
Q 005009 685 ACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 685 vtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
.+++|++|. +.|++++++++++.+.
T Consensus 235 ~s~sK~~~~---~Gg~~~~~~~~~~~~~ 259 (385)
T PRK05958 235 GTLGKALGS---SGAAVLGSETLIDYLI 259 (385)
T ss_pred Eechhhccc---CCcEEEcCHHHHHHHH
Confidence 589999974 2266888988887764
No 113
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.71 E-value=8.7e-17 Score=179.17 Aligned_cols=212 Identities=14% Similarity=0.043 Sum_probs=152.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC----CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~----~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++++|.| ++++|.+.||+|++|+.++++++++.... ...++...+|+++|+++.|. +..++++||++||+
T Consensus 47 ~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~sG~~a~~ 120 (410)
T PRK13392 47 RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFTSGYVSND 120 (410)
T ss_pred eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEECcHHHHHH
Confidence 8999998 88999977999999999999988653211 11345788999999999883 57888999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++...+. . + ..+|..+..+|+++..++..++...
T Consensus 121 ~~i~~l~~~---~---------------~--g~~vi~~~~~h~s~~~~~~~~g~~~------------------------ 156 (410)
T PRK13392 121 AALSTLGKL---L---------------P--GCVILSDALNHASMIEGIRRSGAEK------------------------ 156 (410)
T ss_pred HHHHHHhcC---C---------------C--CCEEEEehhhhHHHHHHHHHcCCeE------------------------
Confidence 999955111 1 1 2466677789998776555443210
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
.. ++ ++|. +.+++.++. ...++..+|++|++ ++..|.
T Consensus 157 ----~~--~~--------------~~d~------------------~~l~~~l~~----~~~~~t~~v~i~~~-~n~tG~ 193 (410)
T PRK13392 157 ----QV--FR--------------HNDL------------------ADLEEQLAS----VDPDRPKLIAFESV-YSMDGD 193 (410)
T ss_pred ----EE--Ee--------------CCCH------------------HHHHHHHHh----ccCCCCEEEEEeCC-CCCCcc
Confidence 00 00 1221 223344442 12346779999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCC--Cccee--eehhccCCCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv--~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
+.+ +++|+++|++||++||+||+|+ |+ |+.|..+ .++.++ .+|++ +++|++|+ +-|.+++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~ 265 (410)
T PRK13392 194 IAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLID 265 (410)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHH
Confidence 887 9999999999999999999998 64 7777665 355665 57887 99999874 1134678888888
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 266 ~l~ 268 (410)
T PRK13392 266 FVR 268 (410)
T ss_pred HHH
Confidence 654
No 114
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.71 E-value=2e-16 Score=174.20 Aligned_cols=211 Identities=14% Similarity=0.036 Sum_probs=150.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-------cccCCCC----CChHHHHHHHHHHhccCCCCCCeEEEeC
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSD 468 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-------~~~~~~~----~~~~~~~Lae~L~~~~~~~~~~rv~f~~ 468 (719)
+++||.| |.+||++.||++.+++.+++.++. .....+. .++...++.++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 7899999 999999999999999999998872 2221122 467899999999999984 5789999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
||+.||.+.+.. +. ++.++|..+..+|+++..++..... +
T Consensus 79 sG~~a~~~~~~~----~~------------------~~~d~ii~d~~~H~sv~~~~~~~~~--~---------------- 118 (370)
T PRK05937 79 SGYMANLGLCAH----LS------------------SVTDYVLWDEQVHISVVYSLSVISG--W---------------- 118 (370)
T ss_pred ChHHHHHHHHHH----hC------------------CCCCEEEEEhhhhHHHHHHHHHcCC--c----------------
Confidence 999998543222 21 2347999999999998887665310 0
Q ss_pred CCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 005009 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV 628 (719)
.++++ ++| .+.+++.++... ....+..+|++|++
T Consensus 119 ------------~~~~~--------------~~d------------------~~~l~~~l~~~~--~~~~~~~~v~v~~v 152 (370)
T PRK05937 119 ------------HQSFR--------------HND------------------LDHLESLLESCR--QRSFGRIFIFVCSV 152 (370)
T ss_pred ------------eEEec--------------CCC------------------HHHHHHHHHhhh--ccCCCcEEEEEecC
Confidence 00111 233 245666665321 11123456889998
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccC---CCcceeeehhccCC-CccchheeE
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG---CVPDIACYGKLLTG-GVIPLAATL 702 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~g---v~PDIvtlgK~Lgg-G~~Plsavl 702 (719)
+++.|.+.| +++|.++|+++|++||+||+|+ | +|++|+.+.. .++ +.+|+.|++|++|+ | ++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~-~~~~~~~~~~~~tlsK~~g~~G----~~vl 222 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCH-SLGYENFYAVLVTYSKALGSMG----AALL 222 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHH-hhCCCCCcEEEEechhhhhcCc----eEEE
Confidence 999999998 9999999999999999999997 5 7778764332 223 34788999999975 4 4567
Q ss_pred eCHHHHhhhc
Q 005009 703 ATNAVFDSFV 712 (719)
Q Consensus 703 ~~~~i~~~~~ 712 (719)
+.+++.+.+.
T Consensus 223 ~~~~~~~~~~ 232 (370)
T PRK05937 223 SSSEVKQDLM 232 (370)
T ss_pred cCHHHHHHHH
Confidence 7777655543
No 115
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.68 E-value=4.6e-16 Score=159.97 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=172.8
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L 452 (719)
.|+.+..|..+. ++|. -+.+|.|++ |++||.+.||+|.+|-++.++.++... +...+...+..|+.+|
T Consensus 50 rVi~s~q~p~i~---v~G~--~k~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQ---VKGS--DKKILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEE---Eecc--ccceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 377888887433 4443 126999998 999999999999999999999987643 4456788999999999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
+++.+. +..+++.|+.+||.+++...+ + ...-|.-+.-.|.+....+.+.. .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail---~-------------------pedAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL---T-------------------PEDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc---C-------------------hhhhhhccccccchhhhhhHHHh--hh
Confidence 998874 678899999999999988772 1 12345556677887777776653 12
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
++. | ...++..+.+
T Consensus 175 ~h~----------------------------------------------d------------------v~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RHV----------------------------------------------D------------------VFDLEHCLIS-- 188 (417)
T ss_pred ccc----------------------------------------------h------------------hHHHHHHHHH--
Confidence 110 0 0112222221
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cC-ccccCccccccccCC--Cccee--e
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TG-FWRLGVETTADLLGC--VPDIA--C 686 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TG-fGRtG~~~a~e~~gv--~PDIv--t 686 (719)
...-+.-.|..+.+ +++.|.+.| ++++.+|++|||.||.+||.| || ||-||. ...+.+|+ ++||+ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr-Gt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR-GTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC-ChHHHhCCCCcceehhhh
Confidence 12346778999998 999999999 999999999999999999999 56 477775 45577887 68887 9
Q ss_pred ehhccCC---CccchheeEeCHHHHhhhcCCCCCC
Q 005009 687 YGKLLTG---GVIPLAATLATNAVFDSFVGDSKKR 718 (719)
Q Consensus 687 lgK~Lgg---G~~Plsavl~~~~i~~~~~~~~~~~ 718 (719)
+||++|| || +.++..+.+.+.+.+++|
T Consensus 261 LgKAlGga~GGy-----ttgp~~li~llrqr~Rpy 290 (417)
T KOG1359|consen 261 LGKALGGASGGY-----TTGPKPLISLLRQRSRPY 290 (417)
T ss_pred hhhhhcCCCCCC-----ccCChhHHHHHHhcCCce
Confidence 9999994 66 999999999998888776
No 116
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.64 E-value=5.6e-15 Score=162.77 Aligned_cols=229 Identities=16% Similarity=0.117 Sum_probs=152.6
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHH
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLL 453 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~ 453 (719)
.+++++|. ++||.+|+ .||||++| .++||..||++.+++++++.+..+... .....+...++++.|+
T Consensus 27 ~~~~~~~~--~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la 97 (397)
T PRK06939 27 VITSPQGA--DITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLA 97 (397)
T ss_pred cccCCCCc--eEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHH
Confidence 35566665 79999999 99999884 568995499999999999987644221 1234566778999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. +..+++++|++|++.+++... +.| ..||..+ .+|.....++.+.+..
T Consensus 98 ~~~g~---~~~i~~tsG~~a~~~~~~~l~-----~~g----------------d~vi~~~-~~~~~~~~~~~~~~~~--- 149 (397)
T PRK06939 98 KFLGT---EDAILYSSCFDANGGLFETLL-----GKE----------------DAIISDA-LNHASIIDGVRLCKAK--- 149 (397)
T ss_pred HHhCC---CcEEEEcChHHHHHHHHHHhC-----CCC----------------CEEEEEh-hhhHHHHHHHHhcCCc---
Confidence 98773 456778889999999887551 111 2455544 4554333322222110
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+.+| ++| .+.+++.+.+..
T Consensus 150 ---------------------------~~~~~--------------~~d------------------~~~l~~~i~~~~- 169 (397)
T PRK06939 150 ---------------------------RYRYA--------------NND------------------MADLEAQLKEAK- 169 (397)
T ss_pred ---------------------------eEEeC--------------CCC------------------HHHHHHHHHhhh-
Confidence 00111 112 133444443210
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCC--Cccee--ee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CY 687 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv--~PDIv--tl 687 (719)
....+..+|+++++ ++..|...+ +++|.++|++||++||+||++. |+ ++.|.. ....+++ .+|++ ++
T Consensus 170 -~~~~~~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~ 242 (397)
T PRK06939 170 -EAGARHKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTL 242 (397)
T ss_pred -ccCCCCeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEEC
Confidence 11236789999997 888887655 9999999999999999999994 53 445542 3344565 46888 89
Q ss_pred hhccCCCccchheeEeCHHHHhhhc
Q 005009 688 GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|.++|+ ++|.+++++++++.+.
T Consensus 243 sK~~~g~--r~G~v~~~~~~~~~l~ 265 (397)
T PRK06939 243 GKALGGA--SGGYTAGRKEVIDWLR 265 (397)
T ss_pred HHHhCcc--CceEEEeCHHHHHHHH
Confidence 9999754 6788999999988775
No 117
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.63 E-value=9.4e-15 Score=161.37 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=154.8
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCC---CCChHHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPE---NVYEPALECAELL 452 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~---~~~~~~~~Lae~L 452 (719)
.++.++.|. ++++.+|+ +||||.++ .++|++.||++++++.+++.+++... ... ...+...+|.++|
T Consensus 22 ~~~~~~~~~--~~~~~~g~----~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~i 92 (393)
T TIGR01822 22 RIITSPQGA--DIRVADGR----EVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKI 92 (393)
T ss_pred cccccCCCc--eEEecCCc----eEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHH
Confidence 345565665 68888999 99999995 68999989999999999998864321 111 2256678899999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++.++. +.++.++||++|+.+++... . ..| ..||+ +.-+|.+....+.+.+...
T Consensus 93 a~~~g~---~~~ii~~~~~~a~~~~~~~l----~-~~g----------------d~vi~-~~~~~~s~~~~~~~~~~~~- 146 (393)
T TIGR01822 93 AAFLGT---EDTILYASCFDANGGLFETL----L-GAE----------------DAIIS-DALNHASIIDGVRLCKAKR- 146 (393)
T ss_pred HHHhCC---CcEEEECchHHHHHHHHHHh----C-CCC----------------CEEEE-eccccHHHHHHHHhcCCce-
Confidence 999884 46777799999999766544 1 111 24555 4555554443333321100
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.++ ++|. +.+++.+.+..
T Consensus 147 -----------------------------~~~~--------------~~d~------------------~~l~~~i~~~~ 165 (393)
T TIGR01822 147 -----------------------------YRYA--------------NNDM------------------ADLEAQLKEAR 165 (393)
T ss_pred -----------------------------EEeC--------------CCCH------------------HHHHHHHHhhh
Confidence 0000 1221 34555554310
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCC--Cccee--e
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--C 686 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv--~PDIv--t 686 (719)
....+...|+++++ +...|.+.+ +++|.++|++||++||+||+|. |+ |..|.. ..+..++ .+|++ +
T Consensus 166 --~~~~~~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s 237 (393)
T TIGR01822 166 --AAGARHRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGT 237 (393)
T ss_pred --hcCCCceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEE
Confidence 11236788999997 899898877 9999999999999999999993 43 344442 2334555 46887 7
Q ss_pred ehhccCCCccchheeEeCHHHHhhhcC
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|.++|+ .+|.+++++++.+.+..
T Consensus 238 ~sK~l~g~--r~G~~~~~~~~~~~l~~ 262 (393)
T TIGR01822 238 LGKALGGA--SGGFTTARKEVVELLRQ 262 (393)
T ss_pred ChHHhhCC--CcEEEEeCHHHHHHHHH
Confidence 89999863 67889999999887643
No 118
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.61 E-value=2e-14 Score=155.83 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=150.3
Q ss_pred EEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhcccccCC----CCCChHHHHHHHHHH
Q 005009 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLL 453 (719)
Q Consensus 379 i~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~~~----~~~~~~~~~Lae~L~ 453 (719)
++++.|. +++ .+|+ +||||.++ .++|| . ||+|++++++++.+++..... ....+...++.+.|+
T Consensus 3 ~~~~~~~--~~~-~~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 71 (360)
T TIGR00858 3 LDRGPGP--EVV-RDGR----RLLNFSSN---DYLGLAS-HPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELA 71 (360)
T ss_pred cccCCCC--eEE-ECCc----eEEecccC---CcccCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHH
Confidence 3455665 565 7899 99999996 57996 6 999999999999876542110 122466788999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++.+. +..+++++|++++..+++.+ . . +.+.|.....+|+....++...+..
T Consensus 72 ~~~~~---~~~i~~~~G~~~~~~~l~~~----~-~-----------------~gd~v~~~~~~~~~~~~~~~~~g~~--- 123 (360)
T TIGR00858 72 EWKGT---EAALLFSSGYLANVGVISAL----V-G-----------------KGDLILSDALNHASLIDGCRLSGAR--- 123 (360)
T ss_pred HHhCC---CCEEEECchHHHHHHHHHHh----C-C-----------------CCCEEEEEccccHHHHHHHHhcCCc---
Confidence 98763 46778889999999887654 1 1 1234555666777655544433210
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+.+| ..| .+.+++.+.+
T Consensus 124 ---------------------------~~~~~--------------~~d------------------~~~l~~~~~~--- 141 (360)
T TIGR00858 124 ---------------------------VRRYR--------------HND------------------VEHLERLLEK--- 141 (360)
T ss_pred ---------------------------eEEec--------------CCC------------------HHHHHHHHHH---
Confidence 00011 111 1445666653
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc--ccccccCCCcc-----eee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-----IAC 686 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PD-----Ivt 686 (719)
....+.++|+++++ ....|...+ +++|.++|++||+++|+||+++ +|+.+.. ....++++.|| +.+
T Consensus 142 -~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s 214 (360)
T TIGR00858 142 -NRGERRKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGT 214 (360)
T ss_pred -cccCCCeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEe
Confidence 11135689999997 888887766 8999999999999999999996 5554431 22345677665 558
Q ss_pred ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|++++ +.|.+++++++++.+.
T Consensus 215 ~sK~~~~---~gG~~~~~~~~~~~~~ 237 (360)
T TIGR00858 215 LSKALGS---YGAYVAGSQALIDYLI 237 (360)
T ss_pred chhhhhc---cCcEEEcCHHHHHHHH
Confidence 9999975 2256888888887764
No 119
>PLN02483 serine palmitoyltransferase
Probab=99.55 E-value=1.8e-13 Score=156.31 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=158.1
Q ss_pred CCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCC-CHHHHHHHHHhhhhccccc---CC-CCCChHHH
Q 005009 372 PEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVM---FP-ENVYEPAL 446 (719)
Q Consensus 372 ~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~-hP~V~~Av~~q~~~~~~~~---~~-~~~~~~~~ 446 (719)
|.....++++....+.+-+...|+ .+++|+|.| +++||.++ |+.+.+++.+.+++++..+ .. ...++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ 149 (489)
T PLN02483 75 PDAWFDVVERVSNDNNKTLKRTTK--TRRCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHR 149 (489)
T ss_pred CCCeEEEEEeecCCCCceEEecCC--CceEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHH
Confidence 334455777766554333333333 248999999 89999984 5778889998888877532 11 12478899
Q ss_pred HHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc
Q 005009 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (719)
Q Consensus 447 ~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl 526 (719)
+|.++|+++.+. +..+++++|+.+|..++.... . +.+.|..+..+|.+...++..
T Consensus 150 ele~~lA~~~g~---~~ai~~~~G~~an~~~i~al~-----~-----------------~Gd~Vi~d~~~h~s~~~~~~~ 204 (489)
T PLN02483 150 ELEELVARFVGK---PAAIVFGMGYATNSTIIPALI-----G-----------------KGGLIISDSLNHNSIVNGARG 204 (489)
T ss_pred HHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----C-----------------CCCEEEEcchhhHHHHHHHHH
Confidence 999999999984 456677889999987776541 1 123445666666655554444
Q ss_pred cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHH
Q 005009 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (719)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~ 606 (719)
+|.. ...+| ++|. +++ .+.+++
T Consensus 205 ~Ga~------------------------------v~~~~--------------~~d~----------~~l----e~~l~~ 226 (489)
T PLN02483 205 SGAT------------------------------IRVFQ--------------HNTP----------SHL----EEVLRE 226 (489)
T ss_pred cCCe------------------------------EEEEe--------------CCCH----------HHH----HHHHHh
Confidence 3311 00111 2221 011 122232
Q ss_pred HHhcCCC-CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCCCc-
Q 005009 607 NLLQNPG-LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVP- 682 (719)
Q Consensus 607 ~l~~~~~-~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv~P- 682 (719)
.+..... ...+.....|++|++ .++.|.+.+ +++|.++|++||++||+||+|+ | +|++|.. ..+++++.|
T Consensus 227 ~i~~~~p~t~~p~~k~livve~v-~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~ 300 (489)
T PLN02483 227 QIAEGQPRTHRPWKKIIVIVEGI-YSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPA 300 (489)
T ss_pred hhhccccccccCCceEEEEECCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcc
Confidence 2211000 011233468899998 899998887 9999999999999999999996 2 5777765 457778755
Q ss_pred --cee--eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 683 --DIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 683 --DIv--tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||+ +++|++|+ +.|.+++++++++.+..
T Consensus 301 ~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~ 332 (489)
T PLN02483 301 DVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKR 332 (489)
T ss_pred cCcEEEEecchhccc---CceEEEcCHHHHHHHHH
Confidence 777 99999973 11448889999988764
No 120
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=99.52 E-value=1e-13 Score=150.61 Aligned_cols=198 Identities=20% Similarity=0.197 Sum_probs=129.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc--cCCCCCChHHHHHHhcCCCccccCCCcccccc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~--~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (719)
||++|||.+|++++|||.|++||+++|. ++|.+|+|||||. +|...+...+.+.+..
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~---------------- 59 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRAT---------------- 59 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHh----------------
Confidence 6889999999999999999999999994 8999999999997 5544333322221111
Q ss_pred chhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHh-c-CCC
Q 005009 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERE-S-GGV 191 (719)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~-~-~~~ 191 (719)
+.++.+.+ +..+. .+-.+. + ...
T Consensus 60 ----------------~~~l~~~~---------------------------------~~~~~------~ae~L~~~~~~d 84 (354)
T COG0857 60 ----------------SSSLTYAE---------------------------------PLVLS------FAEVLLSTGQDD 84 (354)
T ss_pred ----------------hhhcccCc---------------------------------ccchh------hHHHHhccccch
Confidence 00111110 11111 111111 0 123
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHH----H
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISG----T 267 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~----~ 267 (719)
..+++|.+.|.++.+. +|++++||-==..........|.+||+.|+++++||++..+-+..+ .
T Consensus 85 ~l~e~i~~~y~e~~~~-------------~~~vv~~g~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~i 151 (354)
T COG0857 85 VLLEEILANYAELAKD-------------ADVVVVEGDVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSRV 151 (354)
T ss_pred HHHHHHHHHHHHHhcc-------------CceEEeccceeccccCccccccHHHHhhcCcchhhccccccCChhhhhhHH
Confidence 3466777777776653 8899999932111112244789999999999999999977655444 4
Q ss_pred HHHHHHHHhCCCcEEEEEEccCC----CCCHHHHHHhhcC-CCcEEe-cCCCCCCCcchhh
Q 005009 268 ISAYESLKLRGYDVVAVVFEDHG----LVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDLM 322 (719)
Q Consensus 268 ~~~~~~l~~~~~~v~gvi~N~~~----~~~~~~l~~~~~~-~~pvlg-lP~~~~~~~~~~~ 322 (719)
..+...+...+.++.|||+|+.. ......+.+++++ +..+++ +|...-+.+..+.
T Consensus 152 ~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~ 212 (354)
T COG0857 152 ELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVR 212 (354)
T ss_pred HHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHH
Confidence 44555555455589999999762 2345667777776 888999 8887766655544
No 121
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.45 E-value=1.3e-12 Score=141.44 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=139.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
+||.|++ +.+|||.+||+|.+|++++++++.+.. ......+...++.+.|+++.+. +..++++||++|+.
T Consensus 2 ~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~~ 75 (349)
T cd06454 2 KVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAND 75 (349)
T ss_pred Cceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHHH
Confidence 7899998 899999999999999999998865321 0113467778999999998873 45788899999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
++++.+. .+| ..|+ ....+|+....++...|..
T Consensus 76 ~~~~~~~-----~~g----------------d~Vl-~~~~~~~~~~~~~~~~g~~------------------------- 108 (349)
T cd06454 76 GVLSTLA-----GKG----------------DLII-SDSLNHASIIDGIRLSGAK------------------------- 108 (349)
T ss_pred HHHHHhc-----CCC----------------CEEE-EehhhhHHHHHHHHHcCCc-------------------------
Confidence 8886551 111 2344 4555676544332221110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...+| ..| .+.+++.+.+. ..+.+.++|+++++ +...|.
T Consensus 109 -----~~~~~--------------~~~------------------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG~ 147 (349)
T cd06454 109 -----KRIFK--------------HND------------------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDGD 147 (349)
T ss_pred -----eEEec--------------CCC------------------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCCC
Confidence 00011 001 13455555531 11356789999997 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccC---CCccee--eehhccCCCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~g---v~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
..+ +++|.++|++||+++|+||++. +|..+... ....+. ..+|++ +++|.++. +.|.+++++++++
T Consensus 148 ~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~ 219 (349)
T cd06454 148 IAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELID 219 (349)
T ss_pred ccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHH
Confidence 776 8999999999999999999994 44443211 111222 245776 68999974 3356888888887
Q ss_pred hhcC
Q 005009 710 SFVG 713 (719)
Q Consensus 710 ~~~~ 713 (719)
.+..
T Consensus 220 ~~~~ 223 (349)
T cd06454 220 YLRS 223 (349)
T ss_pred HHHH
Confidence 6543
No 122
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.42 E-value=1.2e-12 Score=139.56 Aligned_cols=207 Identities=16% Similarity=0.061 Sum_probs=156.0
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHh
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~ 485 (719)
|.+||.+.||+|.+|+++.+++++... ..+..+..+++|++.|+++..+ +.+++++|-.-||++.|-..-+.
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak~- 254 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAKK- 254 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHHH-
Confidence 667888889999999999999987643 1234577899999999998874 56778888899999998766222
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (719)
. ...+|.-+.+.|.+....+.-++-+.+
T Consensus 255 --l-----------------pgcei~SD~gNHASMI~GIrns~v~K~--------------------------------- 282 (570)
T KOG1360|consen 255 --L-----------------PGCEIFSDEGNHASMIQGIRNSRVPKH--------------------------------- 282 (570)
T ss_pred --C-----------------CCcEEeccccchHHHHHHhhhcCCcce---------------------------------
Confidence 1 236788899999987765554432110
Q ss_pred chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 566 ~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
- +++||. +.|+++|+.+ .+...--|-+|.| .++.|.+.| +++
T Consensus 283 -I----------FrHND~------------------~hL~~lL~~~----~~svPKivAFEtV-hSM~Gavcp----lee 324 (570)
T KOG1360|consen 283 -I----------FRHNDL------------------DHLEQLLQSS----PKSVPKIVAFETV-HSMDGAVCP----LEE 324 (570)
T ss_pred -e----------eccCCH------------------HHHHHHHHhC----CCCCCceEEEeee-eccCCCcCC----HHH
Confidence 0 125663 6788888864 2333345568998 999999999 999
Q ss_pred HHHHHHhcCCcEEEeccccCccccCcc--ccccccCC--Cccee--eehhccC--CCccchheeEeCHHHHhhhcCCCC
Q 005009 646 LVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsavl~~~~i~~~~~~~~~ 716 (719)
|.++++|||++-.+|||+. .|-.|.. +.-++-|| +-||+ |+||+.| ||| ++.+..+.|.+++-..
T Consensus 325 lcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyAa 397 (570)
T KOG1360|consen 325 LCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYAA 397 (570)
T ss_pred HHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhcC
Confidence 9999999999999999996 4556663 33466777 67998 8999999 687 8899999998876443
No 123
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.37 E-value=5.7e-12 Score=139.34 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=133.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhhhcc-cccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 406 ASWWTQGPDATLQIELARDMGYTAARFG-HVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 406 sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+++....||+ ||++++++..|+ ... +... .....+...+++++|+++.+.+ .+.+.|+++|+++++.+++
T Consensus 23 ~~l~~g~~~~~-~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKHN-PPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCCc-CcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 45667789999 999999988887 321 1111 1123356678999999988743 3478888888888899999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.++ ... ++.+.|.+...+||++..++.+.+... +. ..
T Consensus 100 ~~~-~~~------------------~~gd~Vl~~~~~h~~~~~~~~~~~~~~--g~----------------------~~ 136 (398)
T cd00613 100 AAI-RAY------------------HKRNKVLVPDSAHPTNPAVARTRGEPL--GI----------------------EV 136 (398)
T ss_pred HHH-hcc------------------cCCCEEEEcCccCcchHHHHHHhcccC--Cc----------------------EE
Confidence 883 221 123566678889999988887765310 00 00
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++.++.. ..| .+.+++.+. .++++|++++. . ..|.+
T Consensus 137 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~--- 174 (398)
T cd00613 137 VEVPSDEGG-----------TVD------------------LEALKEEVS--------EEVAALMVQYP-N-TLGVF--- 174 (398)
T ss_pred EEeccCCCC-----------CcC------------------HHHHHHhcC--------CCeEEEEEECC-C-CCcee---
Confidence 111111000 000 244555553 36889999986 5 56777
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccC---ccccCccccccccCCCcceee--eh---hccCCCccchheeE-eCHHHHhh
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLGCVPDIAC--YG---KLLTGGVIPLAATL-ATNAVFDS 710 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTG---fGRtG~~~a~e~~gv~PDIvt--lg---K~LggG~~Plsavl-~~~~i~~~ 710 (719)
.+++++|+++|++||++||+|++|++ ++++|.+ .+|+++ +. |++|+| .|.++++ +++++.+.
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~--------~~d~~~~s~~K~~~p~g~G-gp~~g~l~~~~~~~~~ 245 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY--------GADIVVGNLQKTGVPHGGG-GPGAGFFAVKKELVRF 245 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc--------CCCEEEeeccccCCCCCCC-CCceeEEEEhhhhHhh
Confidence 36789999999999999999998853 3334432 489986 33 555656 3655554 55677665
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 246 ~ 246 (398)
T cd00613 246 L 246 (398)
T ss_pred C
Confidence 4
No 124
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.21 E-value=1.6e-10 Score=126.52 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=130.9
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
+++||.+.||+|++|..+.+++++ ..++.+.+|.++|+++.+.+ -+.+++++||++||..++.... ..
T Consensus 27 ~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~-----~~ 94 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALE-----PP 94 (346)
T ss_pred cccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhC-----CC
Confidence 447888889999999999999884 24688999999999998742 2789999999999999998661 11
Q ss_pred cccccccCCCccccCcceEEEE--EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 490 EVLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~--~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
| ..|+. .+.-+|.+....+.+.|...+
T Consensus 95 g----------------d~Vli~~~d~p~~~s~~~~~~l~ga~~~----------------------------------- 123 (346)
T TIGR03576 95 G----------------RKVVHYLPEKPAHPSIPRSCKLAGAEYF----------------------------------- 123 (346)
T ss_pred C----------------CEEEECCCCCCCchhHHHHHHHcCCEEe-----------------------------------
Confidence 1 24543 234567665444444331100
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
.+++. +.++. . .+...|++++ .++.|.+. +..-+++|.
T Consensus 124 -----------~~~~l------------------~~l~~-~---------~~~~lIiitg--~s~~G~v~-~~~~L~~i~ 161 (346)
T TIGR03576 124 -----------ESDEL------------------SELKK-I---------DGTSLVVITG--STMDLKVV-SEEDLKRVI 161 (346)
T ss_pred -----------ccCCH------------------HHHhh-C---------cCceEEEEEC--CCCCCccc-CHHHHHHHH
Confidence 01110 11211 1 1234677776 36777765 467799999
Q ss_pred HHHHhcCCcEEEeccccCcccc---CccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhcCCCC
Q 005009 648 KECQNRKIPVIFDEVFTGFWRL---GVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRt---G~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~~~~~ 716 (719)
++|++||+++|+||++. .|-. |..- ..+++ +|++ +++|+|+|. =+|.+++++++++.+..-..
T Consensus 162 ~la~~~~~~livDEAy~-~~~~~~~~~~~-~~~~~--~divv~s~SKalaG~--r~G~v~~~~~li~~l~~~~~ 229 (346)
T TIGR03576 162 KQAKSKEAIVLVDDASG-ARVRRLYGQPP-ALDLG--ADLVVTSTDKLMDGP--RGGLLAGRKELVDKIKSVGE 229 (346)
T ss_pred HHHHHcCCEEEEECCcc-ccccccCCCCC-HHHcC--CcEEEeccchhcccc--ceEEEEeCHHHHHHHHHhhc
Confidence 99999999999999995 3332 3221 12333 5765 799999653 25669999999998865443
No 125
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.99 E-value=1.3e-08 Score=113.08 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=133.1
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccc-----cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHh
Q 005009 411 QGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~-----~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~ 485 (719)
.-+|.- .+++++|+.+........ .......+...++.++++++++ .+.++|+++|++|+..|++...
T Consensus 27 ~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g---~~~~~~~~g~t~a~~~al~~l~--- 99 (387)
T PRK09331 27 QRGGIL-TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG---MDEARVTHGAREGKFAVMHSLC--- 99 (387)
T ss_pred hcCCCC-CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhc---
Confidence 357888 999999999887543321 1111224567899999999988 3678899999999999988762
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (719)
.+| .+|++-.. .|-+...++...|.. ...++.+
T Consensus 100 --~~g----------------d~Vlv~~~-~h~s~~~~~~~~G~~----------------------------~~~v~~~ 132 (387)
T PRK09331 100 --KKG----------------DYVVLDGL-AHYTSYVAAERAGLN----------------------------VREVPKT 132 (387)
T ss_pred --CCC----------------CEEEECCC-chHHHHHHHHHcCCE----------------------------EEEEeCc
Confidence 111 25665544 444443333322210 0011110
Q ss_pred --chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHH
Q 005009 566 --EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (719)
Q Consensus 566 --~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl 643 (719)
..+ ..| .+.+++.+.+.. .....++.+|+++-. .+..|...+ +
T Consensus 133 ~~~~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l 177 (387)
T PRK09331 133 GYPEY-----------KIT------------------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----A 177 (387)
T ss_pred cCcCC-----------CcC------------------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----H
Confidence 000 011 245555554210 011246778888876 788888877 9
Q ss_pred HHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 644 ~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
++|.++|++||+++|+||+|. +|..+ +....+|+.-.+.++.|.++++ .++|.+++++++++.+...
T Consensus 178 ~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~ 244 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRT 244 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccc
Confidence 999999999999999999995 44322 2222345433344789999877 5889999999988876443
No 126
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.98 E-value=5.3e-09 Score=112.24 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc----ccccCCCcceeeehhccC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----ADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a----~e~~gv~PDIvtlgK~Lg 692 (719)
..++.+|++++. +...|.+. |.+.+++|.++|+++|+++|+||++++++..|.... ....+....+-+++|.++
T Consensus 130 ~~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 207 (350)
T cd00609 130 TPKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207 (350)
T ss_pred CccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccC
Confidence 357899999996 88889855 688999999999999999999999998877666532 222222222337999999
Q ss_pred -CCccchheeEeCH-HHHhhhcC
Q 005009 693 -GGVIPLAATLATN-AVFDSFVG 713 (719)
Q Consensus 693 -gG~~Plsavl~~~-~i~~~~~~ 713 (719)
+| .++|++++++ ++.+.+..
T Consensus 208 ~~g-~~~G~i~~~~~~~~~~~~~ 229 (350)
T cd00609 208 LPG-LRIGYLIAPPEELLERLKK 229 (350)
T ss_pred Ccc-cceEEEecCHHHHHHHHHH
Confidence 77 7899999999 78887653
No 127
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-08 Score=109.95 Aligned_cols=246 Identities=13% Similarity=0.081 Sum_probs=158.9
Q ss_pred CCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCC-CHHHHHHHHHhhhhcccccC----CCCCChHH
Q 005009 371 VPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMF----PENVYEPA 445 (719)
Q Consensus 371 ~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~-hP~V~~Av~~q~~~~~~~~~----~~~~~~~~ 445 (719)
+|.....++++-.-.+.|-+...|+ ..+.|.+.| -++||.++ +-.-++++.+.++++++... -...++.+
T Consensus 110 VPG~~v~l~dR~S~D~n~tfk~tG~--~~~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~h 184 (519)
T KOG1357|consen 110 VPGAWVDLMDRVSDDYNWTFKYTGT--RSRCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEH 184 (519)
T ss_pred CCCceEEeeeeeccCCCceEEeccc--eeeeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHH
Confidence 4444556777766666666666676 113445443 23343320 33344455555566655431 12457889
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc
Q 005009 446 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (719)
Q Consensus 446 ~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals 525 (719)
.++++..+++.+. +.++-+..|.-+|..-+-.. ..+...|.-+.-.|++......
T Consensus 185 kelE~l~A~f~g~---e~a~vF~mGf~TNs~~~p~l----------------------~~~gsLIiSDelNHaSi~~GaR 239 (519)
T KOG1357|consen 185 KELEELVARFLGV---EDAIVFSMGFATNSMNIPSL----------------------LGKGSLIISDELNHASLITGAR 239 (519)
T ss_pred HHHHHHHHHhcCC---cceEEEeccccccccCccee----------------------ecCCcceeeccccchheecccc
Confidence 9999999999885 45566666755554433332 2345667778888998888777
Q ss_pred ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH
Q 005009 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (719)
Q Consensus 526 lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le 605 (719)
++|.... + ..|||+. ++ ..-|+
T Consensus 240 LSgAtiR-----------------------------V---------------fkHNdm~----------~L----Er~Lr 261 (519)
T KOG1357|consen 240 LSGATTR-----------------------------V---------------FRHNDMQ----------GL----ERLLR 261 (519)
T ss_pred ccCceEE-----------------------------E---------------EecCCHH----------HH----HHHHH
Confidence 7763210 0 1256641 11 12333
Q ss_pred HHHhcCCCCC-CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCCCc
Q 005009 606 QNLLQNPGLK-VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP 682 (719)
Q Consensus 606 ~~l~~~~~~~-~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv~P 682 (719)
++|..-+... .+.+.--||+|.| .++.|.++- |+++.++|+|+.+.|++||.+++ .|+||. ..++++|+.|
T Consensus 262 d~I~~gqP~Thrp~kki~iivegi-ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGr-gvce~~g~d~ 335 (519)
T KOG1357|consen 262 DAIVYGQPKTHRPWKKILICVEGI-YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGR-GVCEYFGVDP 335 (519)
T ss_pred HHHhcCCCCcCCcchheeeeeccc-eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCc-ceeeccCCCc
Confidence 4443322222 2567789999998 999999998 89999999999999999999983 567774 6788899865
Q ss_pred ---cee--eehhccC--CCccchheeEeCHHHHhhhcCCC
Q 005009 683 ---DIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDS 715 (719)
Q Consensus 683 ---DIv--tlgK~Lg--gG~~Plsavl~~~~i~~~~~~~~ 715 (719)
||+ |+-|..| ||| +.+++++.+.+.-.+
T Consensus 336 ~dvDImMGtftKSfga~GGy-----iagsk~lid~lrt~s 370 (519)
T KOG1357|consen 336 EDVDIMMGTFTKSFGAAGGY-----IAGSKELIDYLRTPS 370 (519)
T ss_pred hhheeecceehhhcccccce-----ecCcHHHHhhhccCC
Confidence 666 8999987 466 899999999876543
No 128
>PLN02721 threonine aldolase
Probab=98.92 E-value=2.6e-08 Score=108.08 Aligned_cols=217 Identities=13% Similarity=0.036 Sum_probs=127.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
+++|+.++.+. .. +|.+.+|+++. +..... .+..+...+|.+.|+++.+. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~~-~~~~~~a~~~~--~~~~~~--~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----KP-TDAMRAAMANA--EVDDDV--LGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----CC-CHHHHHHHHhc--cCCCcc--cCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 67888887665 36 89999999764 111111 12356678999999999873 568899999999988877
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc-c-cccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~-g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
... ...| ..|+..+.+|.+... + .....|
T Consensus 74 ~~~----~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g----------------------------- 104 (353)
T PLN02721 74 VHC----DVRG----------------SEVILGDNSHIHLYENGGISTLGG----------------------------- 104 (353)
T ss_pred HHc----cCCC----------------CeEEEcCccceehhcccchhhhcC-----------------------------
Confidence 651 1111 357776666422111 0 001000
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...+.+|..- .+. -| .+.+++.+.+.. ..+..+..+|++++. +...|-..
T Consensus 105 -~~~~~v~~~~----------~~~---------~d--------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~~ 154 (353)
T PLN02721 105 -VHPRTVKNNE----------DGT---------MD--------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGRC 154 (353)
T ss_pred -ceeEecCCCc----------CCC---------cC--------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCcc
Confidence 0011111000 000 00 245666665310 012246789999997 77655556
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc--eeeehhccCCCccchhe-eEeCHHHHhhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSF 711 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD--IvtlgK~LggG~~Plsa-vl~~~~i~~~~ 711 (719)
.+.+.+++|.++|++||+++|+||++. ++-.... ..........| +++++|++++ |+|+ +++++++++.+
T Consensus 155 ~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~ 228 (353)
T PLN02721 155 LSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKA 228 (353)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhH
Confidence 689999999999999999999999985 3321100 00000011234 4589999974 4565 56788877653
No 129
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.91 E-value=1.9e-08 Score=96.30 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=61.6
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGG 694 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG 694 (719)
..+++++++++. +...|...+ .++|.++|+++|+++|+||++.++.+...++ ......+|+++.| |.+++
T Consensus 90 ~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~~~- 161 (170)
T cd01494 90 KPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPGV--LIPEGGADVVTFSLHKNLGG- 161 (170)
T ss_pred cCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEeccccccccccccc--ccccccCCEEEEEcccccCC-
Confidence 468899999997 888887776 4999999999999999999999876654332 2223468999888 99987
Q ss_pred ccchheeEeC
Q 005009 695 VIPLAATLAT 704 (719)
Q Consensus 695 ~~Plsavl~~ 704 (719)
...|.++++
T Consensus 162 -~~~G~l~~~ 170 (170)
T cd01494 162 -EGGGVVIVK 170 (170)
T ss_pred -CceEEEEeC
Confidence 356666653
No 130
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.91 E-value=2.5e-08 Score=109.68 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+.+ .+.+ +.++..| +.-.|.+.+ .++++++|+.++++||+||++++|++.|.....+..+..
T Consensus 150 ~~l~~~~~~-----~~~~-~i~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~ 217 (368)
T PRK03317 150 DAAVAAIAE-----HRPD-VVFLTSP--NNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEY 217 (368)
T ss_pred HHHHHHHhc-----cCCC-EEEEeCC--CCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhC
Confidence 456666642 1222 2344555 677788887 788888898889999999999999887766555666667
Q ss_pred ccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 682 PDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 682 PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++ +|||++| .| +++|++++++++++.+..
T Consensus 218 ~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~ 252 (368)
T PRK03317 218 PRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRL 252 (368)
T ss_pred CCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHh
Confidence 8887 8999998 68 799999999999988764
No 131
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=98.85 E-value=2.8e-08 Score=109.68 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~ 696 (719)
+...|+++-. .+..|...+ +++|.++|++||+++|+||+|. +|..+.-. ....+|++ +++|++++| .
T Consensus 146 ~~~lv~~~~p-~~~~G~~~~----l~~i~~la~~~~~~livDea~~-~g~~~~~~----~~~~~di~v~s~sK~~~~~-g 214 (370)
T TIGR02539 146 PPVLALLTHV-DGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT-VGRMPVSA----KEIGADFIVGSGHKSMAAS-G 214 (370)
T ss_pred CcEEEEEECC-CCCCccccC----HHHHHHHHHHcCCeEEEECccc-cCCcCCCH----HHcCCCEEEeeCcccccCC-C
Confidence 4556776654 677788877 8999999999999999999996 54323211 12246865 799999876 5
Q ss_pred chheeEeCHHHHhhhcCCCC
Q 005009 697 PLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~~~~ 716 (719)
|+|.+++++++.+.+.....
T Consensus 215 ~~G~l~~~~~~i~~l~~~~~ 234 (370)
T TIGR02539 215 PCGVLGMSEEWEDIVLRKSR 234 (370)
T ss_pred CEEEEEECHHHHhhhccccc
Confidence 89999999999998765443
No 132
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.82 E-value=5.9e-08 Score=106.20 Aligned_cols=206 Identities=14% Similarity=0.009 Sum_probs=118.7
Q ss_pred CCCCCHHHHHHHHHhhhhcccccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 005009 414 DATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~ 492 (719)
-|. ||++++++.+++........ .....+...++.+.|+++.+.+ -..++|+++|+||++.|++.+ +....+
T Consensus 30 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~-~~~~~~---- 102 (371)
T PRK13520 30 TEP-HPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAA-RNLAKA---- 102 (371)
T ss_pred cCc-hHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHH-HhhccC----
Confidence 567 99999999998875322111 0112333468888898887743 235788999999999999988 432111
Q ss_pred ccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 493 ~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
++.+||..+.++... .......|. ....++.+...
T Consensus 103 ------------~~~~vl~~~~~h~s~-~~~~~~~g~----------------------------~~~~v~~~~~~---- 137 (371)
T PRK13520 103 ------------EKPNIVVPESAHFSF-DKAADMLGV----------------------------ELRRAPLDDDY---- 137 (371)
T ss_pred ------------CCceEEecCcchHHH-HHHHHHcCc----------------------------eEEEecCCCCC----
Confidence 124677777654321 111111110 00112211100
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k 652 (719)
..| .+.+++.+.+ .....+++.+ ....|.+.+ +++|.++|++
T Consensus 138 -------~~d------------------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~ 179 (371)
T PRK13520 138 -------RVD------------------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALE 179 (371)
T ss_pred -------cCC------------------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHH
Confidence 001 3567777752 2223333444 245688877 9999999999
Q ss_pred cCCcEEEeccccCcc----ccCccccccccCCCcceeee--hhccCCCccchheeEeC-HHHHhhhc
Q 005009 653 RKIPVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 653 ~gilLI~DEVqTGfG----RtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~-~~i~~~~~ 712 (719)
||+++|+||+|+|+. +.+..|..... ..|.+++ -|.+.+| .|+|+++++ +++.+.+.
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~ 243 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALA 243 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhc
Confidence 999999999998652 22222333222 3465553 3544445 688888864 45766653
No 133
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.79 E-value=4.3e-08 Score=108.81 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=109.7
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|+.++++... +.| .+||. ...+||
T Consensus 50 r~~~p~~~~le~~la~l~g~---~~~~~~~sG~~Ai~~al~al~-----~~G----------------d~Vl~-~~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGA---ERAVATATGMSAIQAALMTLL-----QAG----------------DHVVA-SRSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEE-ecCCcc
Confidence 34567788999999998873 578899999999999997551 111 24555 455677
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.+...+.-.- ...+. . ...++ .+|
T Consensus 105 ~t~~~~~~~~-------------~~~g~-----~------v~~v~----------------~~d---------------- 128 (380)
T TIGR01325 105 STVGFISEIL-------------PRFGI-----E------VSFVD----------------PTD---------------- 128 (380)
T ss_pred hHHHHHHHHH-------------HHhCC-----E------EEEEC----------------CCC----------------
Confidence 6544322100 00000 0 00011 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. ....|...+ +++|.++|+++|+++|+||+++.+ -. ..-.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~-----~~pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VL-----QQPL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-cc-----CCch
Confidence 134555543 25679999986 676777766 899999999999999999998632 11 1122
Q ss_pred CCCcceee--ehhccCC-CccchheeEeCHHHHhhhc
Q 005009 679 GCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~~~~ 712 (719)
...+||++ ++|.++| |....|++++++++++.+.
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~ 224 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVA 224 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHH
Confidence 34579986 8999987 5333467778888776553
No 134
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=98.75 E-value=2.1e-07 Score=104.66 Aligned_cols=195 Identities=11% Similarity=0.004 Sum_probs=111.9
Q ss_pred CHHHHHHHHHhh-hhcccccCCC---CCChHHHHHHH----HHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHHhhcc
Q 005009 418 QIELARDMGYTA-ARFGHVMFPE---NVYEPALECAE----LLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFD 488 (719)
Q Consensus 418 hP~V~~Av~~q~-~~~~~~~~~~---~~~~~~~~Lae----~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~~~~~ 488 (719)
||++.+|+...+ .+++.....+ ..++...+|++ +++++.+. +.+ ++++||+.||.+++.... +
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~-----~ 112 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL-----K 112 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc-----C
Confidence 899999999985 7776532111 12577888998 99999874 466 457999999999987661 1
Q ss_pred ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchh
Q 005009 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (719)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (719)
+| .+|++-+.+|.|........+. .. .|... .+++.. +..+
T Consensus 113 ~G----------------D~Vl~~~~~~~~~~~~g~~~~~----~~----~~~~~--~~~~~~-------------~~~~ 153 (416)
T PRK13034 113 PG----------------DTILGMSLSHGGHLTHGAKVSL----SG----KWYNA--VQYGVD-------------RLTG 153 (416)
T ss_pred CC----------------CEEEEcCccceeeeecCCccee----cc----ceeee--EEcccc-------------cccC
Confidence 22 3566666654431111111110 00 00000 000000 0000
Q ss_pred hhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHH
Q 005009 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 569 ~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr 647 (719)
..| .+.+++.+.. .+..+|++ +++ .| +..+ +++|.
T Consensus 154 -----------~~d------------------~~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~l~ 189 (416)
T PRK13034 154 -----------LID------------------YDEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FARFR 189 (416)
T ss_pred -----------CcC------------------HHHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHHHH
Confidence 111 2456666642 12356677 575 55 3334 88999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHH
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i 707 (719)
++|++||++||+|+.|+ +|-+|.......++ ..|++ ++.|.|+|+. -|+++++++.
T Consensus 190 ~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~--GG~v~~~~~~ 247 (416)
T PRK13034 190 EIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR--GGMILTNDEE 247 (416)
T ss_pred HHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEEEEeCcccCCCCC--CeEEEECcHH
Confidence 99999999999999994 66665432111112 37877 5689996541 3456665543
No 135
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.75 E-value=2.8e-07 Score=101.78 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=129.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC-ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+||+..+. ..+ +. +|++.+|+.+++....... +. .....+|.+.+++.++-. -+.++++++|++|+..++
T Consensus 29 ~~i~l~~~~--~~~-~~-~~~~~~a~~~~~~~~~~~~---y~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~ 100 (380)
T PRK06225 29 EMIWMGQNT--NHL-GP-HEEVREAMIRCIEEGEYCK---YPPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVM 100 (380)
T ss_pred CeEEccCCC--CCC-CC-CHHHHHHHHHHHhcCCCCC---CCCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHH
Confidence 677776532 234 44 7999999998887532211 11 122456778888877643 357999999999999998
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... .. ...|+..+.+|+... ..+...|.
T Consensus 101 ~~~~-----~~----------------gd~vl~~~p~y~~~~-~~~~~~g~----------------------------- 129 (380)
T PRK06225 101 RAFL-----SP----------------GDNAVTPDPGYLIID-NFASRFGA----------------------------- 129 (380)
T ss_pred HHhc-----CC----------------CCEEEEcCCCCcchH-HHHHHhCc-----------------------------
Confidence 8761 11 135787777776421 11111111
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCcccc
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHM 637 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA-vIvEPViqg~gG~~~ 637 (719)
..+++|-. ++. +-+ .-| .+.+++.+. +++.+ +++.| +.-.|...
T Consensus 130 -~~~~v~~~-------------~~~-~~~--~~d--------~~~l~~~~~--------~~~~~v~l~~p--~NptG~~~ 174 (380)
T PRK06225 130 -EVIEVPIY-------------SEE-CNY--KLT--------PELVKENMD--------ENTRLIYLIDP--LNPLGSSY 174 (380)
T ss_pred -eEEeeccc-------------ccc-CCc--cCC--------HHHHHhhcC--------CCceEEEEeCC--CCCCCcCC
Confidence 01111100 000 000 000 234554443 23434 45677 34556655
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc-cCCCcceeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~-~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+.+.+++|.++|++||+++|+||++..|.. +.....+. .....++.+++|.+| .| +.+|++++++++++.+.
T Consensus 175 -~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~ 248 (380)
T PRK06225 175 -TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVK 248 (380)
T ss_pred -CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHH
Confidence 688899999999999999999999987632 22211111 011234668999998 68 79999999999988764
No 136
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.68 E-value=1.4e-07 Score=104.16 Aligned_cols=171 Identities=13% Similarity=0.047 Sum_probs=112.6
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+. +.+++++||++|+..+++... +. ..+||+....||+.
T Consensus 37 ~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~-----~~----------------gd~Vl~~~~~y~~~ 92 (369)
T cd00614 37 IGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALL-----KA----------------GDHVVASDDLYGGT 92 (369)
T ss_pred CCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHc-----CC----------------CCEEEECCCCcchH
Confidence 4577888999999998873 578899999999999998762 11 13677777777663
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
. ..+...- .. .+ .....++ .+|
T Consensus 93 ~-~~~~~~~-~~------------~g-------------~~~~~v~--------------~~d----------------- 114 (369)
T cd00614 93 Y-RLFERLL-PK------------LG-------------IEVTFVD--------------PDD----------------- 114 (369)
T ss_pred H-HHHHHHH-hh------------cC-------------eEEEEeC--------------CCC-----------------
Confidence 2 2111000 00 00 0000000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++||+++|+||++. .+-. ..-..
T Consensus 115 -~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~-----~~~~~ 174 (369)
T cd00614 115 -PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYL-----QRPLE 174 (369)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhc-----CChhh
Confidence 244555553 25678999987 888888877 9999999999999999999984 2211 11223
Q ss_pred CCccee--eehhccCC-CccchheeEeCH-HHHhhhc
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~~-~i~~~~~ 712 (719)
..+|++ +++|.++| |-...|++++++ ++++.+.
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~ 211 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLR 211 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHH
Confidence 357888 78999986 335678888877 7776553
No 137
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.64 E-value=3.5e-07 Score=99.29 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
.+...++.++|+++++. +.+++++||++|++.+++.. +. .. ..+||....+||+...
T Consensus 17 ~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~~---~~----------------gd~vl~~~~~~~~~~~ 73 (352)
T cd00616 17 GPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-GI---GP----------------GDEVIVPSFTFVATAN 73 (352)
T ss_pred CHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-CC---CC----------------CCEEEeCCcchHHHHH
Confidence 46778999999999873 57889999999999999876 11 11 2478888888886432
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
. +...|.. ...++.+. .+ ..|
T Consensus 74 ~-~~~~g~~----------------------------~~~~~~~~~~~-----------~~d------------------ 95 (352)
T cd00616 74 A-ILLLGAT----------------------------PVFVDIDPDTY-----------NID------------------ 95 (352)
T ss_pred H-HHHcCCe----------------------------EEEEecCCCcC-----------CcC------------------
Confidence 2 2111100 00111110 00 001
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.+. .++.+|++..+ . |...+ +++|+++|+++|+++|+|++|+ +|.. +.....|.
T Consensus 96 ~~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~---~~~~~~~~ 155 (352)
T cd00616 96 PELIEAAIT--------PRTKAIIPVHL-Y---GNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGAT---YKGRKVGT 155 (352)
T ss_pred HHHHHHhcC--------cCCeEEEEECC-C---CCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCe---ECCEEccc
Confidence 244555553 24667777664 4 44444 8999999999999999999997 4332 22223344
Q ss_pred Ccceeeeh----hccCCCccchheeEeC-HHHHhhh
Q 005009 681 VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 681 ~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
..|+.+++ |.+++| +.|+++++ +++++.+
T Consensus 156 ~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~ 189 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERA 189 (352)
T ss_pred CcceeEEcCCCCCCCccc--CceEEEECCHHHHHHH
Confidence 46888877 999655 35667665 4665543
No 138
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.63 E-value=1.8e-07 Score=105.12 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=108.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+ .+.+++++||++|+..+++... +.| .+||.....|+|.
T Consensus 54 ~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vl~~~~~y~~t 109 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLA-----QAG----------------DNIVSSSYLYGGT 109 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEECCCcHHH
Confidence 456778899999999987 3678999999999999998762 112 3688888888762
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+.-.- . .. |.....+| .+|
T Consensus 110 -~~~~~~~~-~------------~~-------------G~~v~~v~--------------~~d----------------- 131 (418)
T TIGR01326 110 -YNLFKHTL-K------------RL-------------GIEVRFVD--------------PDD----------------- 131 (418)
T ss_pred -HHHHHHHH-H------------Hc-------------CcEEEEEC--------------CCC-----------------
Confidence 22211000 0 00 00001111 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +++.+|++|.. ..-.|.+.+ +++|.++|++||+++|+||++. .| +......
T Consensus 132 -~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~-----~~~~~l~ 191 (418)
T TIGR01326 132 -PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TP-----YLCRPID 191 (418)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hh-----hcCCchh
Confidence 244565553 24678999986 777777766 8999999999999999999984 22 1222233
Q ss_pred CCccee--eehhccCC-CccchheeEeCH
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLATN 705 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~~ 705 (719)
..+|++ +++|.++| | ..+|++++++
T Consensus 192 ~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 192 HGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred cCCeEEEECccccccCCc-cceEEEEEec
Confidence 457988 68999998 7 7898888864
No 139
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.62 E-value=7.2e-07 Score=97.90 Aligned_cols=208 Identities=12% Similarity=0.065 Sum_probs=123.3
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc
Q 005009 413 PDATLQIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~~~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~ 487 (719)
=|+. .|++++++.+....++.... ....++...++.+++++..+ .+.++++++|++|+..++....
T Consensus 10 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~i~~~~g~t~al~~~l~~~~----- 80 (361)
T cd06452 10 GGRL-TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG---MDEARVTPGAREGKFAVMHSLC----- 80 (361)
T ss_pred CCCC-CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC---CceEEEeCCHHHHHHHHHHHhc-----
Confidence 4677 88888888877644333211 11124668899999999987 4789999999999999887651
Q ss_pred cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
.+| .+|+....+|.+ ...++...|.. ...++...
T Consensus 81 ~~g----------------d~Vl~~~~~~~~-~~~~~~~~g~~----------------------------~~~v~~~~- 114 (361)
T cd06452 81 EKG----------------DWVVVDGLAHYT-SYVAAERAGLN----------------------------VREVPNTG- 114 (361)
T ss_pred CCC----------------CEEEEcCCcchH-HHHHHHhcCCE----------------------------EEEEecCC-
Confidence 111 245555444443 22221111100 00111100
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
+..+ .-| .+.+++.+.+... ....++.+|++.-. .+..|...+ +++|.
T Consensus 115 ----------------~~~~--~~d--------~~~l~~~l~~~~~-~~~~~~~lv~l~~p-~n~tG~~~~----~~~i~ 162 (361)
T cd06452 115 ----------------HPEY--HIT--------PEGYAEVIEEVKD-EFGKPPALALLTHV-DGNYGNLHD----AKKIA 162 (361)
T ss_pred ----------------CCCc--ccC--------HHHHHHHHHHHhh-ccCCCceEEEEECC-CCCCeeecc----HHHHH
Confidence 0000 000 2445555542100 00124566666654 566676655 89999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+++|+++|+||++. +|... +....+|. |++ ++.|.++++ .++|.+++++++.+.+..
T Consensus 163 ~~~~~~~~~vivD~a~~-~g~~~--~~~~~~~~--d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 163 KVCHEYGVPLLLNGAYT-VGRMP--VSGKELGA--DFIVGSGHKSMAAS-APIGVLATTEEWADIVFR 224 (361)
T ss_pred HHHHHcCCeEEEECCcc-cCCcC--CCHHHcCC--CEEEecCCccccCC-CCeEEEEECHHHHHHHhc
Confidence 99999999999999995 43221 33333443 655 678999876 589999999999888744
No 140
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.60 E-value=9.3e-07 Score=95.38 Aligned_cols=209 Identities=13% Similarity=0.021 Sum_probs=121.2
Q ss_pred eccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHH
Q 005009 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (719)
Q Consensus 403 D~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~ 482 (719)
||+| .+++| . +|++.+|+.+.+.... . ....+...++.+.+++..+. +.++++++|++|+..+++..+
T Consensus 1 ~~~~---~~~~~-~-~~~v~~a~~~~~~~~~--~--~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 1 DFRS---DTVTG-P-TPEMLEAMAAANVGDD--V--YGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred Cccc---ccCCC-C-CHHHHHHHHhcccCCc--c--cCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhc
Confidence 4554 55677 5 8999999987653221 1 12345678899999998872 578899999999998887651
Q ss_pred HHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc---ccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 483 RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 483 r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals---lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
..| ..|+ ....+|.....+.. +.|.. .
T Consensus 69 -----~~g----------------d~v~-~~~~~~~~~~~~~~~~~~~g~~----------------------------~ 98 (338)
T cd06502 69 -----QPG----------------GSVI-CHETAHIYTDEAGAPEFLSGVK----------------------------L 98 (338)
T ss_pred -----CCC----------------CeEE-EecCcceeeecCCcHHHHcCce----------------------------E
Confidence 111 2455 55556654322111 11100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++... + ..| .+.+++.+.+... .+..+..+|+++.. ...||+. +
T Consensus 99 ~~v~~~~-~-----------~~d------------------~~~l~~~i~~~~~-~~~~~~~~v~l~~p-~n~g~~~--~ 144 (338)
T cd06502 99 LPVPGEN-G-----------KLT------------------PEDLEAAIRPRDD-IHFPPPSLVSLENT-TEGGTVY--P 144 (338)
T ss_pred EeecCCC-C-----------cCC------------------HHHHHHHhhccCC-CcCCcceEEEEEee-cCCcccc--C
Confidence 0111100 0 011 2456666653100 11135677777764 5555544 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCc--cccCccccccccCCCccee--eehhccCCCccchhe-eEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGf--GRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsa-vl~~~~i~~~~~ 712 (719)
.+.+++|.++|++||+++|+||.+.-+ +-.|. ....+...+|++ +++|.++. |.++ +++++++.+.+.
T Consensus 145 ~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~---~~g~~~~~~~~~~~~~~ 217 (338)
T cd06502 145 LDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA---PVGAVVVGNRDFIARAR 217 (338)
T ss_pred HHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC---ccceEEECCHHHHHHHH
Confidence 889999999999999999999987311 11122 112222356766 67888863 3344 457888877653
No 141
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.59 E-value=7.9e-07 Score=99.19 Aligned_cols=208 Identities=13% Similarity=0.051 Sum_probs=125.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC-------ChHHHHHHHHHHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-------~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsE 472 (719)
.|||..+ .+-- ++.+.+++.+.+..... +..... .+...++.++|+++++.+ -+.++|+++|++
T Consensus 5 ~yld~aa------~~~~-~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTPV-DPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCCC-CHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888654 3455 89999999887754321 111111 133455667788887743 357999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++.+ ..+...+ ..+||... ..|.+...+...... .+.
T Consensus 76 a~~~~l~~l-~~~~~~~----------------g~~Vi~~~-~~h~s~~~~~~~~~~---~g~----------------- 117 (402)
T TIGR02006 76 SNNLAIKGI-AHFYKSK----------------GNHIITSK-TEHKAVLDTCRYLER---EGF----------------- 117 (402)
T ss_pred HHHHHHHHH-HHhhcCC----------------CCEEEECC-CccHHHHHHHHHHHh---cCC-----------------
Confidence 999999877 3221111 12455544 456544433221100 000
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
....++..... .-| .+.+++.+. ++..+|++..+ +..
T Consensus 118 -----~v~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG---------------------LID--------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00111111000 000 244555553 23567888886 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~ 708 (719)
.|...+ +++|.++|++||+++|+|++|+ +|-.. ++..+..+|+++++ |.+|. ..+|+++++++..
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~ 221 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYGP--KGIGALYVRRKPR 221 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcCC--CceEEEEEccCCC
Confidence 999887 8999999999999999999995 43321 22234578999999 96542 2378888887544
No 142
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.56 E-value=1e-06 Score=97.25 Aligned_cols=205 Identities=14% Similarity=0.042 Sum_probs=122.1
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC------ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV------YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 401 yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~------~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
|||..+ .+-- ++.|.+|+.+.+.... .+..... .+...++.++++++++.. .+.++|+++|++|+
T Consensus 2 yld~aa------~~~~-~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~ 72 (379)
T TIGR03402 2 YLDNNA------TTRV-DPEVLEAMLPYFTEYF-GNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESD 72 (379)
T ss_pred cCCCcC------CCCC-CHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 667443 4556 8999999998876431 1111111 233556667888888753 36799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
..|++.+. ... +++..||.....|++. ......... .+ .
T Consensus 73 ~~al~~~~-~~~-----------------~~~~~vv~~~~~~~s~-~~~~~~~~~---~G-----------~-------- 111 (379)
T TIGR03402 73 NTAIKSAL-AAQ-----------------PEKRHIITTAVEHPAV-LSLCQHLEK---QG-----------Y-------- 111 (379)
T ss_pred HHHHHHHH-Hhc-----------------CCCCeEEEcccccHHH-HHHHHHHHH---cC-----------C--------
Confidence 99999872 211 1123566666666542 111111000 00 0
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
....++.++.. .-+ .+.+++.+. +++..+++.-+ +...|
T Consensus 112 ---~v~~v~~~~~g---------------------~~~--------~~~l~~~i~--------~~~~lv~i~~~-~n~tG 150 (379)
T TIGR03402 112 ---KVTYLPVDEEG---------------------RLD--------LEELRAAIT--------DDTALVSVMWA-NNETG 150 (379)
T ss_pred ---EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCcEEEEEEcc-cCCee
Confidence 00111111000 000 245666554 24566777765 78889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
.+.+ +++|.++|++||+++|+|++|+ +|.. -.+......|+++++ | +.|. ..+|++.++++.
T Consensus 151 ~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~ 214 (379)
T TIGR03402 151 TIFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGT 214 (379)
T ss_pred eccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCC
Confidence 9888 7899999999999999999996 4421 122223468999999 9 6553 346777777653
No 143
>PRK07682 hypothetical protein; Validated
Probab=98.56 E-value=3.2e-06 Score=93.34 Aligned_cols=206 Identities=12% Similarity=0.119 Sum_probs=122.9
Q ss_pred CHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
.+.+.+++.+.++.... ........+....+++.+.+..+... . +.++++++|++|++.+++... +.
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~----- 104 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-----NP----- 104 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-----CC-----
Confidence 56778888877654211 11112334556677777765433210 1 379999999999998887651 11
Q ss_pred ccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
...|+..+.+|++... .....+.. .+++|..
T Consensus 105 -----------gd~vl~~~p~y~~~~~-~~~~~g~~------------------------------~~~~~~~------- 135 (378)
T PRK07682 105 -----------GDEVLIVEPSFVSYAP-LVTLAGGV------------------------------PVPVATT------- 135 (378)
T ss_pred -----------CCEEEEeCCCchhhHH-HHHHcCCE------------------------------EEEeecC-------
Confidence 2478888888885322 11111110 0111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhc
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNR 653 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~ 653 (719)
..+ .+ .-| .+.+++.+. +++.++++ -| +.-.|. ..+.+.+++|.++|++|
T Consensus 136 -----~~~---~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p--~NPtG~-~~s~~~~~~l~~~~~~~ 186 (378)
T PRK07682 136 -----LEN---EF--KVQ--------PAQIEAAIT--------AKTKAILLCSP--NNPTGA-VLNKSELEEIAVIVEKH 186 (378)
T ss_pred -----Ccc---CC--CCC--------HHHHHhhcC--------cccEEEEEECC--CCCcCc-CcCHHHHHHHHHHHHHc
Confidence 000 00 000 244555543 23555544 45 555666 44788999999999999
Q ss_pred CCcEEEeccccCccccCccccc-cccCCCcc---eeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 654 KIPVIFDEVFTGFWRLGVETTA-DLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~~~a~-e~~gv~PD---IvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
|+++|+||++..|...+.+..+ ...+..+. +-+++|.++ .| +.+|.+++++++++.+.
T Consensus 187 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~ 249 (378)
T PRK07682 187 DLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAML 249 (378)
T ss_pred CcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHH
Confidence 9999999999988655543221 11122222 337999998 68 79999999999988764
No 144
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.56 E-value=2.5e-06 Score=86.29 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=49.9
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
+|+|||++.. +.......-+++.. -.+|+|+.....+++++..+++.++..|.++.|+|+|++
T Consensus 128 yD~ViiD~pp-----~~~~~~~~~~~~~~-D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~ 190 (204)
T TIGR01007 128 FDYIIIDTPP-----IGTVTDAAIIARAC-DASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKV 190 (204)
T ss_pred CCEEEEeCCC-----ccccchHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCc
Confidence 9999999953 22212223344444 478899999999999999999999999999999999997
No 145
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.53 E-value=1.8e-06 Score=93.67 Aligned_cols=194 Identities=16% Similarity=0.128 Sum_probs=114.6
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCC-CeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~-~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
.|.|.+++.... .+-. ....+...++.++|++..+.+.- ..++++.||++|++.++....
T Consensus 11 ~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-------------- 71 (355)
T TIGR03301 11 SATVRDAMLVDW---CHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-------------- 71 (355)
T ss_pred CHHHHHHhhhhc---cCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------------
Confidence 566777766521 2211 11236677888888887764311 257889999999999998762
Q ss_pred CCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
..+.++|....+++|.....++ ..|. + ...++.++.+
T Consensus 72 -------~~~~~vi~~~~~~~~~~~~~~a~~~g~---------------------~-------~~~i~~~~~~------- 109 (355)
T TIGR03301 72 -------PRDGKLLVLINGAYGERLAKICEYLGI---------------------P-------HTDLNFSEYE------- 109 (355)
T ss_pred -------CCCCeEEEECCCchhhHHHHHHHHcCC---------------------c-------eEEEecCCCC-------
Confidence 1124677777777775321111 1110 0 0111111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
..| .+.+++.+.+ ++ ++..+ ++-+ ....|...+ +++|.++|++||
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~~-~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~ 155 (355)
T TIGR03301 110 ----PPD------------------LNRIEEALAA-----DP-DITHVATVHH--ETTTGILNP----LEAIAKVARSHG 155 (355)
T ss_pred ----CCC------------------HHHHHHHHHh-----CC-CceEEEEEec--CCcccchhH----HHHHHHHHHHcC
Confidence 001 2556677653 22 33333 2222 344577766 899999999999
Q ss_pred CcEEEeccccCccccCccccccccCCCcce--eeehhccCCCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDI--vtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|+|++++ ||.. .+....++ .|+ .+++|.++|+ .-+|.+++++++++.+.
T Consensus 156 ~~livD~~~s-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~ 209 (355)
T TIGR03301 156 AVLIVDAMSS-FGAI--PIDIEELD--VDALIASANKCLEGV-PGFGFVIARRDLLEASA 209 (355)
T ss_pred CEEEEEeccc-cCCc--ccchhhcC--ccEEEecCCcccccC-CceeEEEECHHHHHHhh
Confidence 9999999986 6532 23333343 455 4789998763 12588999999988765
No 146
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=98.48 E-value=3.7e-06 Score=87.08 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+..+.+ .+|+|||.+.+|+. ..+......- -.||+|+.....++..++...+
T Consensus 94 ~~~~l~~~l~~l~~-------------~yD~VIiD~p~~~~------~~~~~~l~~a-d~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIID-------------DTDFLLIDAPAGLE------RDAVTALAAA-DELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHh-------------hCCEEEEeCCCccC------HHHHHHHHhC-CeEEEEECCCCchHHHHHHHHH
Confidence 45566666666543 39999999987652 1222222222 2588999988888988888888
Q ss_pred HHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~~----~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
.++..+.++.|+|+|++... ..+.+.+.+ ++|+++ ||+.+..
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~--~~~~l~~Ip~~~~~ 200 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETIL--EVPVLGVVPEDPEV 200 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhh--CCcEEEEecCCHhH
Confidence 77777888999999998432 134455555 899999 9987654
No 147
>PRK06108 aspartate aminotransferase; Provisional
Probab=98.48 E-value=6.3e-06 Score=90.79 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=125.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++++..|... ++ . .+.+.+++++.+..... ........+....+++.+.+..+.. .-++++++++|++|+..+
T Consensus 25 ~~i~l~~g~~~--~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 25 GVLPLWFGESD--LP-T-PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CeEEecCCCCC--CC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 35666654432 33 2 57899998887754221 1111223455667777776544411 125799999999999988
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... .. ...|+...-+|.+.. ..+...|.
T Consensus 101 ~~~l~-----~~----------------gd~vl~~~p~y~~~~-~~~~~~g~---------------------------- 130 (382)
T PRK06108 101 AQALV-----GP----------------GDEVVAVTPLWPNLV-AAPKILGA---------------------------- 130 (382)
T ss_pred HHHhc-----CC----------------CCEEEEeCCCccchH-HHHHHCCC----------------------------
Confidence 88651 11 135777666664422 11111110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
..+.+|... .+ .-| .-| .+.+++.+. .++.++++... +.-.|.+.
T Consensus 131 --~~~~v~~~~------------~~--~~~--~~d--------~~~l~~~~~--------~~~~~i~l~~p-~NPtG~~~ 175 (382)
T PRK06108 131 --RVVCVPLDF------------GG--GGW--TLD--------LDRLLAAIT--------PRTRALFINSP-NNPTGWTA 175 (382)
T ss_pred --EEEEeeCCC------------CC--CCc--cCC--------HHHHHHhcC--------ccceEEEEECC-CCCCCccc
Confidence 111111000 00 000 000 244555543 13445555443 56667664
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cccc-c-ccccCCCcc-e--eeehhccC-CCccchheeEeCHHHHhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-T-ADLLGCVPD-I--ACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~~~-a-~e~~gv~PD-I--vtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
+.+.+++|.++|++||+++|+||++.+|... +... . .......+. + .+++|.+| .| +.+|.+++++++.+.
T Consensus 176 -~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~ 253 (382)
T PRK06108 176 -SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQV 253 (382)
T ss_pred -CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHH
Confidence 7899999999999999999999999887432 2111 1 111111122 2 27999997 57 699999999988876
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 254 ~~ 255 (382)
T PRK06108 254 LE 255 (382)
T ss_pred HH
Confidence 63
No 148
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.43 E-value=1.1e-05 Score=79.18 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=63.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHh-hcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~-~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~------ 292 (719)
.+|+|||-+..++. .....+.. ..---+|+|.....-++..+...++.+++.+.++.|+|+|++...
T Consensus 67 ~yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 49999999976531 12233332 233457888888888999999999999999999999999997210
Q ss_pred -----CHHHHHHhhcC-CCcEEe-cCCCC
Q 005009 293 -----NEVPLMSYLRN-RVPVLV-LPPLP 314 (719)
Q Consensus 293 -----~~~~l~~~~~~-~~pvlg-lP~~~ 314 (719)
....+++..+. +.|++| ||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred cccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 11234444433 899999 99865
No 149
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.41 E-value=1.1e-05 Score=89.00 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=52.0
Q ss_pred eeeeccccccccCCCCCC-CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~-hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+|..++-+ .++|-+. .+++++|+++.++.+. ...+...+++++++++.+. +.++++++|++|+..|+
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSV 77 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHH
Confidence 455554444 2444431 6899999999876542 2346677889999998873 57899999999999999
Q ss_pred HHH
Q 005009 479 KMA 481 (719)
Q Consensus 479 KlA 481 (719)
+..
T Consensus 78 ~al 80 (363)
T TIGR01437 78 AAV 80 (363)
T ss_pred HHH
Confidence 877
No 150
>PRK14012 cysteine desulfurase; Provisional
Probab=98.40 E-value=4.6e-06 Score=93.11 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=122.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhh---hcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~---~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
.|+|..+ .+-- ++.+.+++.+.+. .+........ ..+...++.++++++++.. .+.++|++||+
T Consensus 5 iyld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTPV-DPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCCC-CHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6888554 4566 8999999988775 2221110000 0134556777888888743 35699999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|+..+++.+.+.+. .. ...||.-...| .+...+..... ..+. .
T Consensus 77 ~al~~~l~~l~~~~~-~~----------------gd~Vi~~~~~~-~s~~~~~~~~~---~~g~-------------~-- 120 (404)
T PRK14012 77 ESDNLAIKGAAHFYQ-KK----------------GKHIITSKTEH-KAVLDTCRQLE---REGF-------------E-- 120 (404)
T ss_pred HHHHHHHHHHHHhhc-CC----------------CCEEEEecCcc-HHHHHHHHHHH---hCCC-------------E--
Confidence 999999987622221 11 12466655554 43332221110 0000 0
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++.+.. ++ -| .+.+++.+. .+..+|++.-+ +.
T Consensus 121 -------~~~v~~~~~------------g~---------~d--------~~~l~~~i~--------~~t~lv~~~~~-~n 155 (404)
T PRK14012 121 -------VTYLDPQSN------------GI---------ID--------LEKLEAAMR--------DDTILVSIMHV-NN 155 (404)
T ss_pred -------EEEEccCCC------------Cc---------CC--------HHHHHHhcC--------CCCEEEEEECc-CC
Confidence 001111100 00 00 245666664 23457777776 78
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
..|.+.+ +++|.++|++||+++|+|++|+ +|..- +-.. ...+|+++++ |.+|.+ .+|+++++++.
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp~--g~G~l~~~~~~ 222 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--IDLS--KLKVDLMSFSAHKIYGPK--GIGALYVRRKP 222 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--cCcc--cCCCCEEEEehhhccCCC--ceEEEEEecCC
Confidence 8898887 8999999999999999999996 43321 1111 2458999887 976532 36778887764
No 151
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.40 E-value=4.5e-06 Score=91.18 Aligned_cols=203 Identities=10% Similarity=0.008 Sum_probs=118.3
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCC-------ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHH
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-------~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~ 484 (719)
..|-- ++.+.+|+.+.+..... ...... .+...++.++|+++++.+ -+.++|++++++|++.+++.. ..
T Consensus 6 ~~~~~-~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l-~~ 81 (353)
T TIGR03235 6 ATTPI-DPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGL-AR 81 (353)
T ss_pred CCCCC-CHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHH-HH
Confidence 45566 89999999988754211 111101 134567788888887743 357999999999999999766 22
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (719)
.... +++..||. ....|.+....+..... .+ . ....++.
T Consensus 82 ~~~~---------------~g~~~vi~-~~~~~~s~~~~~~~~~~---~G-----------~-----------~v~~v~~ 120 (353)
T TIGR03235 82 AGEQ---------------KGKKHIIT-SAIEHPAVLEPIRALER---NG-----------F-----------TVTYLPV 120 (353)
T ss_pred hccc---------------CCCCeeeE-cccccHHHHHHHHHHHh---cC-----------C-----------EEEEEcc
Confidence 1111 11234444 44445543332221100 00 0 0011111
Q ss_pred cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHH
Q 005009 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (719)
Q Consensus 565 P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~ 644 (719)
+... ..| .+.+++.+. .+...|++.-+ +...|.+.+ ++
T Consensus 121 ~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~ 158 (353)
T TIGR03235 121 DESG-----------RID------------------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IR 158 (353)
T ss_pred CCCC-----------cCC------------------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HH
Confidence 1000 000 245555553 24567777776 888899987 89
Q ss_pred HHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHH
Q 005009 645 ILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 645 ~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~ 708 (719)
+|.++|++||+++|+|++|. +|..- +-.+ ....|+++++ |.+ |-.-+|+++++++..
T Consensus 159 ~I~~l~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~--gp~g~g~l~~~~~~~ 217 (353)
T TIGR03235 159 EIAEVLEAHEAFFHVDAAQV-VGKIT--VDLS--ADRIDLISCSGHKIY--GPKGIGALVIRKRGK 217 (353)
T ss_pred HHHHHHHHcCCEEEEEchhh-cCCcc--cccc--ccCCCEEEeehhhcC--CCCceEEEEEccCcc
Confidence 99999999999999999995 44321 2122 2358999887 964 311267888888753
No 152
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.38 E-value=2.4e-06 Score=96.49 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=107.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||+.|++.+++..+ +.| ..||+....|+|.
T Consensus 60 ~~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all-----~pG----------------d~VIv~~~~y~~t 115 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLL-----QPG----------------DEFIAARKLYGGS 115 (427)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CCC----------------CEEEEecCcchhH
Confidence 3456678899999998874 568999999999999998762 111 3688888888774
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
.. .+... .... |.....++ ..|
T Consensus 116 ~~-~~~~~-------------~~~~-------------G~~v~~vd--------------~~d----------------- 137 (427)
T PRK05994 116 IN-QFGHA-------------FKSF-------------GWQVRWAD--------------ADD----------------- 137 (427)
T ss_pred HH-HHHHH-------------HHhc-------------CcEEEEEC--------------CCC-----------------
Confidence 21 11000 0000 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.. ....|.+.+ +++|.++|++||+++|+||+++. | +.+..+.
T Consensus 138 -~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~--~~~~pl~ 197 (427)
T PRK05994 138 -PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----P--YLIRPIE 197 (427)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----c--ccCCccc
Confidence 134555553 25678999986 788888876 89999999999999999999962 2 2223345
Q ss_pred CCcceee--ehhccCC-CccchheeEeC
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLAT 704 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~~ 704 (719)
..+|+++ +.|.+|| | -++|++++.
T Consensus 198 ~gaDivv~S~tK~lgg~~-~~~gG~v~~ 224 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHG-NSMGGIIVD 224 (427)
T ss_pred cCCcEEEEcCccccCCCC-CcEEEEEEe
Confidence 6789885 7899986 4 467776663
No 153
>PLN02242 methionine gamma-lyase
Probab=98.38 E-value=2.9e-06 Score=95.48 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +.| ..||.....|.+
T Consensus 73 ~~~Pt~~~LE~~lA~l~g---~~~~l~~~sG~~Ai~~al~al~-----~~G----------------D~Vl~~~~~Y~~- 127 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEG---TEAAYCTASGMSAISSVLLQLC-----SSG----------------GHVVASNTLYGG- 127 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEcCCcHHH-
Confidence 457788999999999887 3678899999999999998662 112 356666655533
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+..... +. .+ .... +.+. .|
T Consensus 128 ~~~~~~~~~~---~~---------~G-------------~~~~-----------------~~d~-------~d------- 151 (418)
T PLN02242 128 THALLAHFLP---RK---------CN-------------ITTT-----------------FVDI-------TD------- 151 (418)
T ss_pred HHHHHHHhhh---hc---------cC-------------ceEE-----------------EcCC-------CC-------
Confidence 2221110000 00 00 0000 1110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +.+..+|++|.. ..-.|.+.+ +++|.++|++||+++|+||+++.+ .... ..+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~~----~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLSP----ARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCCH----HHcC
Confidence 245666554 124678999976 777787765 899999999999999999999643 2211 1223
Q ss_pred CCccee--eehhccCCCccch-heeEeCHHHHhhhc
Q 005009 680 CVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIv--tlgK~LggG~~Pl-savl~~~~i~~~~~ 712 (719)
.||+ +++|.++|+--.+ |++++++++++.+.
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHH
Confidence 5776 6899997632453 77888888877654
No 154
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=98.36 E-value=5.1e-06 Score=90.36 Aligned_cols=209 Identities=11% Similarity=0.094 Sum_probs=121.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
+.|||.+|.. .++. +|++++|+++++...... ......+|.+.++++++-. -+.+++++++++++..+++
T Consensus 20 ~~i~l~~~~~--~~~~--~~~~~~a~~~~~~~~~~y-----~~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNEN--PFGP--PPKAKEALRAEADKLHRY-----PDPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCCC--CCCC--CHHHHHHHHHhHHHhhcC-----CCCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 7899987533 3443 799999999887543211 1122356777777776522 3579999999999988877
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+|..... .....| .
T Consensus 90 ~l~-----~~----------------gd~v~~~~p~y~~~~~-~~~~~g------------------------------~ 117 (346)
T TIGR01141 90 AFL-----EP----------------GDAVLVPPPTYSMYEI-SAKIHG------------------------------A 117 (346)
T ss_pred Hhc-----CC----------------CCEEEEcCCCHHHHHH-HHHHcC------------------------------C
Confidence 651 11 1367777766632111 011001 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+.+|.. .+ + ..| .+.+++.+. .++.+|++... ....|...+
T Consensus 118 ~~~~~~~~-------------~~----~--~~d--------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 118 EVVKVPLD-------------ED----G--QLD--------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred eEEEeccC-------------CC----C--CCC--------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 01111100 00 0 001 234444332 24556666644 677788876
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.++++++|+.+ |+++|+||++..|...+..+. .....++++ +++|.+| .| +.+|.+++++++.+.+..
T Consensus 161 ---~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~--~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 161 ---RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLP--LLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNK 234 (346)
T ss_pred ---HHHHHHHHHhCCCCcEEEEECchhhhcCCccHHH--HHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHh
Confidence 55566666655 999999999987754322221 112234544 6899996 47 688999999999887753
No 155
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.35 E-value=6.6e-06 Score=93.19 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g 522 (719)
+...+|.++|++.++ .+.+++++||++|+..|++.+.+.+..+.+. .....||+-..+|.+...
T Consensus 63 ~~~~~fe~~lA~~~g---~~~~v~~~sGt~al~~aL~al~~~~~~~~~~------------~pGd~VIv~~~t~~a~~~- 126 (438)
T PRK15407 63 RFNDAFEKKLAEFLG---VRYALLVNSGSSANLLAFSALTSPKLGDRAL------------KPGDEVITVAAGFPTTVN- 126 (438)
T ss_pred hhHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHhhccccccCC------------CCCCEEEECCCCcHHHHH-
Confidence 446789999999987 3579999999999999998763222111111 112468888777765322
Q ss_pred cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 523 alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
++...|.. | ..++. |.. ++ -| .
T Consensus 127 ~v~~~G~~--------------------p--------v~vdvd~~~------------~~---------id--------~ 149 (438)
T PRK15407 127 PIIQNGLV--------------------P--------VFVDVELPT------------YN---------ID--------A 149 (438)
T ss_pred HHHHcCCE--------------------E--------EEEecCCCc------------CC---------cC--------H
Confidence 22211100 0 00110 000 11 01 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+. .++.+|++.+. .|. +..+++|+++|++||+++|.|++|+ +| ..+.-...|-.
T Consensus 150 ~~le~~i~--------~~tkaVi~~~~-~G~-------p~dl~~I~~la~~~gi~vIeDaa~a-~G---~~~~g~~~G~~ 209 (438)
T PRK15407 150 SLLEAAVS--------PKTKAIMIAHT-LGN-------PFDLAAVKAFCDKHNLWLIEDNCDA-LG---STYDGRMTGTF 209 (438)
T ss_pred HHHHHHcC--------cCCeEEEEeCC-CCC-------hhhHHHHHHHHHHCCCEEEEECccc-hh---hhcCCeeeecc
Confidence 45565553 35678888875 442 2458999999999999999999996 43 22221222333
Q ss_pred cceeeeh----hccCCCccchheeEeCHHHH
Q 005009 682 PDIACYG----KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 682 PDIvtlg----K~LggG~~Plsavl~~~~i~ 708 (719)
-|+.||| |.++.| .-|+++++++-+
T Consensus 210 gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l 238 (438)
T PRK15407 210 GDIATLSFYPAHHITMG--EGGAVFTNDPLL 238 (438)
T ss_pred CceEEEeCCCCCCcccc--CceEEEECCHHH
Confidence 4777665 667654 345677765433
No 156
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=98.35 E-value=8e-06 Score=89.64 Aligned_cols=209 Identities=11% Similarity=0.125 Sum_probs=122.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
+++||.++. +.+| . +|.+.+++++.+..+.. +......+|.+.+++..+-+ -+.++++++.+++...++.
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLG-P-SPKAIEAIRAAADELHR-----YPDGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhcC-----CCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 899998853 3466 4 78899999987765322 11122346777777766532 2578888888877766555
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.. . +. ...|+..+-+|.+....+ ...|.
T Consensus 103 ~l----~-~~----------------gd~vl~~~p~y~~~~~~~-~~~g~------------------------------ 130 (367)
T PRK02731 103 AY----L-GP----------------GDEVIYSEHGFAVYPIAA-QAVGA------------------------------ 130 (367)
T ss_pred Hh----c-CC----------------CCEEEEecCCHHHHHHHH-HHcCC------------------------------
Confidence 43 1 11 136777777765432211 11110
Q ss_pred eeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
..+++|. .+ ..| .+.+++.+. .+..+|++.-. +.-.|.+.+
T Consensus 131 ~~~~~~~~~~-----------~~~------------------~~~l~~~~~--------~~~~~v~l~~p-~nptG~~~~ 172 (367)
T PRK02731 131 KPVEVPAKDY-----------GHD------------------LDAMLAAVT--------PRTRLVFIANP-NNPTGTYLP 172 (367)
T ss_pred eEEEecccCC-----------CCC------------------HHHHHHHhC--------CCCcEEEEeCC-CCCCCcCCC
Confidence 0111110 00 000 244555553 13344555543 677787776
Q ss_pred CHHHHHHHHHHHHh--cCCcEEEeccccCccccCc-cccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhh
Q 005009 639 DPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.++++++|+. +|+++|+||++..+...+. ..+....+..++++ +++|.+| .| +.+|.+++++++.+.+
T Consensus 173 ----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l 247 (367)
T PRK02731 173 ----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDAL 247 (367)
T ss_pred ----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHH
Confidence 4455555554 4999999999987654332 22233333345655 7999997 68 6999999999998877
Q ss_pred cC
Q 005009 712 VG 713 (719)
Q Consensus 712 ~~ 713 (719)
..
T Consensus 248 ~~ 249 (367)
T PRK02731 248 NR 249 (367)
T ss_pred HH
Confidence 53
No 157
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.35 E-value=5.4e-06 Score=90.43 Aligned_cols=195 Identities=17% Similarity=0.059 Sum_probs=115.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
++++.+|+.+.+.. + ......+...++.+.|++.++.+.-..+++++||++|+..+++... ..|
T Consensus 11 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-----~~g------- 74 (356)
T cd06451 11 PPRVLKAMNRPMLG--H--RSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-----EPG------- 74 (356)
T ss_pred CHHHHHHhCCCccC--C--CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-----CCC-------
Confidence 67777777543321 1 1011234466888888888874212357899999999988887541 112
Q ss_pred CCccccCcceEEEEEeCCcccCcccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..||+...+|++..... ....|.. ...++....+
T Consensus 75 ---------~~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 109 (356)
T cd06451 75 ---------DKVLVGVNGVFGDRWADMAERYGAD----------------------------VDVVEKPWGE-------- 109 (356)
T ss_pred ---------CEEEEecCCchhHHHHHHHHHhCCC----------------------------eEEeecCCCC--------
Confidence 36777766665532111 1111100 0011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|++-.. +...|.+.+ ++++.++|+++|++
T Consensus 110 ---~~~------------------~~~l~~~i~~-------~~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~ 156 (356)
T cd06451 110 ---AVS------------------PEEIAEALEQ-------HDIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDAL 156 (356)
T ss_pred ---CCC------------------HHHHHHHHhc-------cCCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCE
Confidence 001 2456666642 24455655554 566788776 88999999999999
Q ss_pred EEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++|. +|.. .+....+ .+|+++. .|.++++ ..+|++++++++++.+.
T Consensus 157 li~D~~~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~ 208 (356)
T cd06451 157 LIVDAVSS-LGGE--PFRMDEW--GVDVAYTGSQKALGAP-PGLGPIAFSERALERIK 208 (356)
T ss_pred EEEeeehh-ccCc--ccccccc--CccEEEecCchhccCC-CCcceeEECHHHHHHHH
Confidence 99999985 5432 2222233 3577654 6999875 46789999999887654
No 158
>PRK07777 aminotransferase; Validated
Probab=98.34 E-value=1.9e-05 Score=87.58 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=64.6
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccccccc-CCC-ccee--eehhccC-
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GCV-PDIA--CYGKLLT- 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~-gv~-PDIv--tlgK~Lg- 692 (719)
++.+|++... +.-.|... +.+.+++|.++|++||+++|+||++.+|.-.+. ......+ +.. .+|+ +++|.+|
T Consensus 159 ~~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 236 (387)
T PRK07777 159 RTRALIVNSP-HNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNV 236 (387)
T ss_pred ccEEEEEcCC-CCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccC
Confidence 4556667654 67778765 788999999999999999999999987632232 1111111 111 2333 7999998
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +-+|++++++++.+.+.
T Consensus 237 ~G-lRiG~~~~~~~l~~~~~ 255 (387)
T PRK07777 237 TG-WKIGWACGPAPLIAAVR 255 (387)
T ss_pred cC-ceeEEEecCHHHHHHHH
Confidence 68 78999999998887664
No 159
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.34 E-value=1.2e-05 Score=88.25 Aligned_cols=208 Identities=10% Similarity=0.047 Sum_probs=121.6
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCC------CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHh
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~------~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~ 485 (719)
..|-- .+.+.+|+++.+.........+. ..+...++.+.|+++++...-+.+++++||++|+..+++.+. .
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~-~- 83 (373)
T cd06453 7 ATSQK-PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG-R- 83 (373)
T ss_pred cccCC-CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh-h-
Confidence 46667 89999999887755322110001 123345666788887764212479999999999999998772 1
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (719)
.. ....+||+...+|-+. ........ . ..+ . ....++..
T Consensus 84 -~~---------------~~g~~vl~~~~~~~~~-~~~~~~~~-~-~~g-----------~-----------~~~~v~~~ 122 (373)
T cd06453 84 -AN---------------KPGDEIVTSVMEHHSN-IVPWQQLA-E-RTG-----------A-----------KLKVVPVD 122 (373)
T ss_pred -cC---------------CCCCEEEECcchhHHH-HHHHHHHH-h-hcC-----------c-----------EEEEeecC
Confidence 00 0123566665444331 11111000 0 000 0 00111111
Q ss_pred chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 566 ~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
+.. .-| .+.+++.+. +++.+|++.-+ ....|...+ +++
T Consensus 123 ~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~----~~~ 160 (373)
T cd06453 123 DDG---------------------QLD--------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP----VKE 160 (373)
T ss_pred CCC---------------------CcC--------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC----HHH
Confidence 000 001 245666664 24567777654 566788877 799
Q ss_pred HHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|.++|++||++||+|++++ +|... + ......+|+++++ |.+++ .-+|.+++++++.+.+.
T Consensus 161 i~~~~~~~~~~li~D~a~~-~~~~~--~--~~~~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~ 222 (373)
T cd06453 161 IGEIAHEAGVPVLVDGAQS-AGHMP--V--DVQDLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMP 222 (373)
T ss_pred HHHHHHHcCCEEEEEhhhh-cCcee--e--eccccCCCEEEeccccccCC--CCcEEEEEchHHhhcCC
Confidence 9999999999999999996 43321 1 1123457999888 99886 34688889999887654
No 160
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2e-06 Score=92.81 Aligned_cols=214 Identities=15% Similarity=0.124 Sum_probs=142.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc--CCC--CCChHHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPE--NVYEPALECAE 450 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~--~~~--~~~~~~~~Lae 450 (719)
.+.++++.-+.+ ...||+ .+++|.| ++.+|...|+++.+.+...+.+++-.. ..+ .+-+.+.+|.+
T Consensus 77 ~~~v~e~~~~~~---~~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~ 146 (467)
T KOG1358|consen 77 NTPVLESVMLPH---VTIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEK 146 (467)
T ss_pred CCcccccccCCc---eEecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHH
Confidence 345677766664 457899 9999888 778898889999999999999986543 111 24678899999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|++.+|- +..+.-+-|-.+++.++..- + .|.+||..+.+-|=...-++.++...
T Consensus 147 ~iakF~G~---E~aivYs~gF~ti~S~ipaf----s------------------KrGDIi~~de~~nfaIq~GlqlSRS~ 201 (467)
T KOG1358|consen 147 RIAKFMGT---EDAIVYSYGFSTIESAIPAF----S------------------KRGDIIFVDEAVNFAIQKGLQLSRST 201 (467)
T ss_pred HHHHhhCC---cceeeeccccchhhhcchhh----h------------------ccCcEEEEehhhhHHHHHHHhhhhhe
Confidence 99999984 55555566778888887643 2 23478877776554333333333110
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
..+| .+||. +.+|+.+.+
T Consensus 202 --------------i~~F------------------------------khndm------------------~~lerll~E 219 (467)
T KOG1358|consen 202 --------------ISYF------------------------------KHNDM------------------EDLERLLPE 219 (467)
T ss_pred --------------eEEe------------------------------cCCCH------------------HHHHHhccC
Confidence 0000 13443 233333322
Q ss_pred CC--CCCCCC---cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCC--
Q 005009 611 NP--GLKVSG---CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV-- 681 (719)
Q Consensus 611 ~~--~~~~~~---~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~-- 681 (719)
.. ..+++. ..--+++|.+ .-..|.+.| ++++.++..||..-+|+||-.+ ||-.|+ .+..+|+|+.
T Consensus 220 ~~~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~~ 293 (467)
T KOG1358|consen 220 QEDEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPIT 293 (467)
T ss_pred cchhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCcc
Confidence 11 002222 2457899997 888899999 9999999999999999999997 555555 4677899985
Q ss_pred -cceee--ehhcc
Q 005009 682 -PDIAC--YGKLL 691 (719)
Q Consensus 682 -PDIvt--lgK~L 691 (719)
-|+++ +.-+|
T Consensus 294 ~iDiv~~sm~~al 306 (467)
T KOG1358|consen 294 DIDIVTASMETAL 306 (467)
T ss_pred ceeeeeecccccc
Confidence 46665 34444
No 161
>PLN02651 cysteine desulfurase
Probab=98.31 E-value=7.8e-06 Score=89.93 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHHHHHhhhhc-ccccC-CC----CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 413 PDATLQIELARDMGYTAARF-GHVMF-PE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~-~~~~~-~~----~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
.+-- ++++.+|+.+.+... ..... .. ...+...++.++|+++++.. -+.+.|+++|++|+..+++.+++.+.
T Consensus 8 ~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 8 TTPI-DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4556 899999998877542 11110 00 01233556777888887643 35799999999999999988733221
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
+. ..+||.....|++ ....+..-.. .+ . ....++.+.
T Consensus 86 -~~----------------g~~vl~~~~~h~s-~~~~~~~~~~---~g-----------~-----------~v~~v~~~~ 122 (364)
T PLN02651 86 -DK----------------KKHVITTQTEHKC-VLDSCRHLQQ---EG-----------F-----------EVTYLPVKS 122 (364)
T ss_pred -CC----------------CCEEEEcccccHH-HHHHHHHHHh---cC-----------C-----------EEEEEccCC
Confidence 11 2356665555444 2222111000 00 0 001111110
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
.. . -| .+.+++.+. +++..|++..+ ....|.+.+ +++|
T Consensus 123 ~~-------------~--------~d--------~~~l~~~i~--------~~t~lv~v~~~-~n~tG~~~~----l~~I 160 (364)
T PLN02651 123 DG-------------L--------VD--------LDELAAAIR--------PDTALVSVMAV-NNEIGVIQP----VEEI 160 (364)
T ss_pred CC-------------c--------CC--------HHHHHHhcC--------CCcEEEEEECC-CCCceeccc----HHHH
Confidence 00 0 00 245666664 24567788776 778899888 8999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhh
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~ 711 (719)
.++|++||+++++|.+|+ +|.. .+-.+.+ .+|++++ -| ++|. ..+|++.++++..+.+
T Consensus 161 ~~~~~~~g~~~~vD~a~~-~g~~--~~~~~~~--~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l 220 (364)
T PLN02651 161 GELCREKKVLFHTDAAQA-VGKI--PVDVDDL--GVDLMSISGHK-IYGP-KGVGALYVRRRPRVRL 220 (364)
T ss_pred HHHHHHcCCEEEEEcchh-hCCc--ccCcccC--CCCEEEechhh-hCCC-CceEEEEEcCCCCCCC
Confidence 999999999999999996 3321 2333333 4698865 46 6432 3478888898765543
No 162
>CHL00175 minD septum-site determining protein; Validated
Probab=98.31 E-value=6.5e-06 Score=87.45 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=64.2
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--------
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~-------- 292 (719)
+|+|||.+..|+... ........+ .+|+|+.....++.++...++.++..+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~------~~~~l~~aD-~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVG------FINAIAPAQ-EAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHH------HHHHHHhcC-eeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 999999998764221 222223333 68889999999999999999999988877789999998321
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 293 NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
....+++++ +.|+++ ||+.+..
T Consensus 200 ~~~~l~~~~--~~~~~~~Ip~d~~v 222 (281)
T CHL00175 200 SVRDVQEML--GIPLLGAIPEDENV 222 (281)
T ss_pred cHHHHHHHh--CCCeEEEccCCHhH
Confidence 234466666 899999 9987754
No 163
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.31 E-value=8.8e-06 Score=89.33 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=54.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~ 696 (719)
++.+|++... +...|.+.+ +++|.++|+++|+++|+||+|+ +|... +..+. ..+|+++++ |.++|. .
T Consensus 137 ~~~~v~~~~~-~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~~--~~~D~~~~s~~K~l~~p-~ 205 (376)
T TIGR01977 137 NTKLIVVSHA-SNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMTE--LAIDMLAFTGHKGLLGP-Q 205 (376)
T ss_pred CCeEEEEECC-CCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCchh--cCCCEEEecccccccCC-C
Confidence 4566767665 788888887 8899999999999999999995 55432 11222 357987655 988763 1
Q ss_pred chheeEeCHHH
Q 005009 697 PLAATLATNAV 707 (719)
Q Consensus 697 Plsavl~~~~i 707 (719)
-.|+++++++.
T Consensus 206 g~g~l~~~~~~ 216 (376)
T TIGR01977 206 GTGGLYIREGI 216 (376)
T ss_pred CceEEEEcCCc
Confidence 24566666653
No 164
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=98.30 E-value=2.2e-05 Score=89.56 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc----c
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD----L 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e----~ 677 (719)
+.|++.+.+ .+++++.+|+++.- ..-.|-.+.+.+.+++|+++|++||++||.|+.+..- +.+|..+ +
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e---~a~f~~~~e~g~ 235 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAE---NAYFIKQREPGY 235 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhh---hhhhhhhccccc
Confidence 667777764 33467889998854 4444434557899999999999999999999988531 1112110 0
Q ss_pred cC-----------CCcceeeehhccCCCccchheeEe-C-HHHHhhhc
Q 005009 678 LG-----------CVPDIACYGKLLTGGVIPLAATLA-T-NAVFDSFV 712 (719)
Q Consensus 678 ~g-----------v~PDIvtlgK~LggG~~Plsavl~-~-~~i~~~~~ 712 (719)
.+ --.|+++++ +--.|+.|.|++++ + +++++.+.
T Consensus 236 ~~~si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~ 282 (460)
T PRK13238 236 KDKSIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECR 282 (460)
T ss_pred cCCCHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhh
Confidence 11 126777665 33234457666666 3 46766553
No 165
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.30 E-value=1.5e-05 Score=86.98 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-c-ccc-ccc
Q 005009 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-V-ETT-ADL 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~-~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~-~~a-~e~ 677 (719)
+.+++.+++. .... ++.++++... +.-.|... +.+.+++|.++|++||+++|+||++..+ ..+ . ++. ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-cccccccc-ccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 5677777752 1122 3567777665 66677654 7888999999999999999999999876 334 2 111 222
Q ss_pred cCCCcc-ee--eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 678 LGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 678 ~gv~PD-Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
..-.++ |+ +++|.+| -| +.+|.+++++++.+.+.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~ 244 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLR 244 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhh
Confidence 233444 33 6899998 58 68899999999888764
No 166
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.29 E-value=2.3e-05 Score=88.98 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhhhhccccc--C-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~--~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
++++++|+.+.+..+.... . .+........+.++|+++.+. +.+++++||+.|+..++... ..
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l------~~----- 159 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL------AK----- 159 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh------CC-----
Confidence 7999999999888654211 0 112235567889999999874 46778999999998888432 11
Q ss_pred ccCCCccccCcceEEEEEeCCc--ccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 495 FLGKDTTEKCIELKVLALKGSY--HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~sy--HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
...||..++.+ +|.+. ++... .+. . |.....++
T Consensus 160 -----------GdeVIvs~~e~v~~ggs~---~i~~~--~~~---------~-------------G~~~~~v~------- 194 (454)
T TIGR00474 160 -----------GKEVIVSRGELVEIGGSF---RIPDV--MEQ---------S-------------GAKLVEVG------- 194 (454)
T ss_pred -----------cCEEEECCChhhhhcchh---hHHHH--HHH---------c-------------CCEEEEeC-------
Confidence 23577766654 23211 11000 000 0 00000000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc-cccCCc--cccCCHHHHHHHHHH
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV-VHAAGG--MHMVDPLFQRILVKE 649 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV-iqg~gG--~~~pp~~fl~~Lr~L 649 (719)
.++. . + .+.+++++. .+.++|+++-. .....| ...+ +++|.++
T Consensus 195 -------~~~~-------~---~-----l~dle~aI~--------~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~l 240 (454)
T TIGR00474 195 -------TTNR-------T---H-----LKDYEDAIT--------ENTALLLKVHTSNYRIVGFTEEVS----IAELVAL 240 (454)
T ss_pred -------CCCC-------C---C-----HHHHHHhcC--------cCCEEEEEEccCcccccCCCCCCC----HHHHHHH
Confidence 0110 0 0 244555553 24566666653 022234 3555 9999999
Q ss_pred HHhcCCcEEEeccccCccccCcc--cc-------ccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVE--TT-------ADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~--~a-------~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|++||+++|+|- |+|-.|.. |+ .+-.....|++++| |.|||-. .|+++++++..+.+.
T Consensus 241 a~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~--~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 241 GREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ--AGIIVGKKELIERLK 309 (454)
T ss_pred HHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe--EEEEEECHHHHHhhh
Confidence 999999999995 34433331 11 11122357999999 9998752 567889988876543
No 167
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=98.28 E-value=1.2e-05 Score=87.94 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=57.4
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCCcceeeehhccC-CCccchh
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLA 699 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~PDIvtlgK~Lg-gG~~Pls 699 (719)
.++..| +...|.+.+ .+++.++|+++|+++|+||++.+|. .+..-.. ..++-.--+-+|+|.+| .| +.+|
T Consensus 162 v~~~~p--~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG 233 (361)
T PRK00950 162 IFLCTP--NNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAG-LRIG 233 (361)
T ss_pred EEEeCC--CCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCch-hhcc
Confidence 344456 566788777 5688999999999999999998774 1221111 11110011228999998 68 7889
Q ss_pred eeEeCHHHHhhhcC
Q 005009 700 ATLATNAVFDSFVG 713 (719)
Q Consensus 700 avl~~~~i~~~~~~ 713 (719)
.+++++++++.+..
T Consensus 234 ~~~~~~~~~~~~~~ 247 (361)
T PRK00950 234 YGFVPEWLIDYYMR 247 (361)
T ss_pred hhcCCHHHHHHHHH
Confidence 99999999877643
No 168
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.28 E-value=5.4e-06 Score=92.14 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=107.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+++.+. +.+++++||++|+..++.... +.| ..||..+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g~---~~~~~~~sG~~Ai~~al~all-----~~G----------------D~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGG---AGCYLYPSGLAAVTNSILAFV-----KAG----------------DHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEECcHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHHH
Confidence 4467778999999998773 678999999999999987541 112 3688888888873
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
....-... .. .+. . +.+.+. .+
T Consensus 103 ~~~~~~~~--~~------------~gi----------------~--------------v~~~d~-------~~------- 124 (377)
T TIGR01324 103 RYFCDIVL--KR------------MGV----------------D--------------ITYYDP-------LI------- 124 (377)
T ss_pred HHHHHHHH--Hh------------cCc----------------E--------------EEEECC-------CC-------
Confidence 21100000 00 000 0 000110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. ....|...+ +++|.++|+++|+++|+||++. +|-.+... .
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~pl-----~ 184 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFKPL-----E 184 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccCcc-----c
Confidence 034555553 24668999976 666676655 9999999999999999999995 33333322 2
Q ss_pred CCcceeee--hhccCCC-ccchheeEeCHHHHhhh
Q 005009 680 CVPDIACY--GKLLTGG-VIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtl--gK~LggG-~~Plsavl~~~~i~~~~ 711 (719)
...|+++. .|.++|- =.=.|+++++++.++.+
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l 219 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQL 219 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHH
Confidence 34688864 9999861 02246677887766544
No 169
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=98.28 E-value=7.8e-06 Score=85.10 Aligned_cols=101 Identities=11% Similarity=0.176 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+..+.+. +|+|||++.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~-------------~D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEE-------------FDYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHh-------------CCEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 344555555555443 9999999987764321 12222222 488888899999999999999
Q ss_pred HHHhCCCcEEEEEEccCCC----C----CHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGL----V----NEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~----~----~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.++..+....++|+|++.. . ..+.+.+.+ +.|+++ ||....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~ 206 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEIL--SIPLIGVIPEDEA 206 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHh--CCceeEEccCCHH
Confidence 9988776678999999821 1 233455555 789999 888764
No 170
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=98.27 E-value=1e-05 Score=88.67 Aligned_cols=210 Identities=10% Similarity=0.062 Sum_probs=121.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+.++.. .+|. +|.+.+|+.++++.+.+.. .....+|.+.+++..+-. -+.+++++++++|...+++
T Consensus 30 ~~i~l~~n~~--~~~~--~~~v~~a~~~~~~~~~~~p-----~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNEN--PYGP--SPKVKEAIAAHLDELALYP-----DGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCCC--CCCC--CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 5788877543 3553 7999999998887654322 112345556666655422 3579999999999887766
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ...|+...-+|++....+. ..|.. .
T Consensus 100 ~~~-----~~----------------gd~v~~~~p~y~~~~~~~~-~~g~~----------------------------~ 129 (359)
T PRK03158 100 ALL-----NP----------------GTNTVMAEPTFSQYRHNAI-IEGAE----------------------------V 129 (359)
T ss_pred HHh-----CC----------------CCEEEEcCCCHHHHHHHHH-HcCCe----------------------------E
Confidence 541 11 2368888888887322111 11100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++..+ + ..| .+.+++.+. .++.++++... +.-.|.+.+.
T Consensus 130 ~~~~~~~-~---------------------~~d--------~~~l~~~~~--------~~~~~v~i~~p-~NPtG~~~~~ 170 (359)
T PRK03158 130 REVPLKD-G---------------------GHD--------LEAMLKAID--------EQTKIVWICNP-NNPTGTYVNH 170 (359)
T ss_pred EEEecCC-C---------------------CcC--------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCCH
Confidence 0111100 0 000 234444442 23445565544 7888988863
Q ss_pred HHHHHHHHHHHHh--cCCcEEEeccccCccccCc-cccccccCC-Cccee--eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQN--RKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~-~~a~e~~gv-~PDIv--tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+++.++++. +|+++|+||++..|-.-+. .......+- ...++ +|+|.+| .| +.+|.+++++++.+.+.
T Consensus 171 ----~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~ 245 (359)
T PRK03158 171 ----EELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLN 245 (359)
T ss_pred ----HHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHH
Confidence 344555544 6999999999976522111 011111111 12344 8999998 68 79999999999988775
Q ss_pred C
Q 005009 713 G 713 (719)
Q Consensus 713 ~ 713 (719)
.
T Consensus 246 ~ 246 (359)
T PRK03158 246 I 246 (359)
T ss_pred H
Confidence 3
No 171
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.26 E-value=6.2e-06 Score=93.04 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||++|+..+++... +.| .+||.....|+|
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~-----~~G----------------d~Vl~~~~~Y~~- 109 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIA-----EAG----------------DNIVSVAKLYGG- 109 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCcch-
Confidence 4466778999999998863 567899999999999998662 112 368888888887
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+... ... .+. . + ..+ + ..|
T Consensus 110 t~~~~~~~----l~~---------~gi----~-v------~~~--d--------------~~d----------------- 132 (425)
T PRK06084 110 TYNLLAHT----LPR---------IGI----E-T------RFA--A--------------HDD----------------- 132 (425)
T ss_pred HHHHHHHh----ccc---------cee----E-E------EEE--C--------------CCC-----------------
Confidence 33322210 000 000 0 0 000 0 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.. +.-.|.+.+ +++|.++|++||+++|+||++. .+-.. ....
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 245666664 24678999986 788888776 8999999999999999999995 22222 2223
Q ss_pred CCccee--eehhccCCCccchheeEeC
Q 005009 680 CVPDIA--CYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 680 v~PDIv--tlgK~LggG~~Plsavl~~ 704 (719)
.-+||+ .+.|.++|.--.+|++++.
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEe
Confidence 457887 6899998722567766664
No 172
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.24 E-value=2.9e-05 Score=86.37 Aligned_cols=213 Identities=9% Similarity=0.033 Sum_probs=124.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCC-----CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~-----~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||-. ..|-- .+.+.+|+.+.+...... .... ...+...++-++|+++++...-+.|.|++|++++
T Consensus 21 ~yld~a------~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSA------ATALK-PQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCC------cccCC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 688844 45666 889999998877643211 1000 0123355666778887774224679999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++... .-.-+ ...+||..+..|++.......+... . |.
T Consensus 94 i~~~~~~~~-~~~~~----------------~gd~vl~~~~~~~s~~~~~~~~~~~---~-----------g~------- 135 (401)
T PRK10874 94 INLVAQSYA-RPRLQ----------------PGDEIIVSEAEHHANLVPWLMVAQQ---T-----------GA------- 135 (401)
T ss_pred HHHHHHHhh-hccCC----------------CcCEEEECCcchHHHHHHHHHHHHH---h-----------CC-------
Confidence 998887651 10001 1247888888777632111111100 0 00
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.+..+ ..| .+.+++.+. .+...|++.-+ ....
T Consensus 136 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~i~~~-~n~t 173 (401)
T PRK10874 136 ----KVVKLPLGADR-----------LPD------------------VDLLPELIT--------PRTRILALGQM-SNVT 173 (401)
T ss_pred ----EEEEEecCCCC-----------cCC------------------HHHHHHhcC--------cCcEEEEEeCC-cccc
Confidence 00111111000 000 245666653 13345555554 6777
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccC-CCccchheeEeCHHHHhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
|.+.+ +++|.++|+++|+++|+||+|. +|..- . +.....+|+++++ |.+| .| +|.+.+++++.+.
T Consensus 174 G~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 241 (401)
T PRK10874 174 GGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP--A--DVQALDIDFYAFSGHKLYGPTG---IGVLYGKSELLEA 241 (401)
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc--C--CchhcCCCEEEEecccccCCCc---cEEEEEchHHHhc
Confidence 88877 8999999999999999999995 43321 1 2122358988776 9654 24 5788899998876
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 242 ~ 242 (401)
T PRK10874 242 M 242 (401)
T ss_pred C
Confidence 5
No 173
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.22 E-value=4.4e-05 Score=85.49 Aligned_cols=92 Identities=9% Similarity=-0.010 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
+.+++.+.+ .+..+|++ .+. . |...+ +++|.++|++||+++|+||+|. +|-++........+
T Consensus 155 ~~l~~~i~~-------~~~k~v~~~~~~-~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~- 217 (416)
T PRK00011 155 DEVEKLALE-------HKPKLIIAGASA-Y---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP- 217 (416)
T ss_pred HHHHHHHHh-------cCCCEEEECCCc-C---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-
Confidence 556666652 12334444 554 3 33334 8999999999999999999985 33333211011122
Q ss_pred Cccee--eehhccCCCccchheeEeC-HHHHhhhc
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~-~~i~~~~~ 712 (719)
..|++ +++|+++| .+.|+++++ +++.+.+.
T Consensus 218 ~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 218 HADVVTTTTHKTLRG--PRGGLILTNDEELAKKIN 250 (416)
T ss_pred CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHH
Confidence 35776 68999954 356778885 67777654
No 174
>PRK04311 selenocysteine synthase; Provisional
Probab=98.21 E-value=3.6e-05 Score=87.69 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhhhhccccc--C-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~--~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
.+++.+|+.+.+..+.... . .+...+....+.+.|+++.+. +.++++|||+.|+..++... ..
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga---e~a~vv~sgtaAl~l~l~~l------~~----- 164 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA---EDALVVNNNAAAVLLALNAL------AA----- 164 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CC-----
Confidence 6899999998887654211 0 011234456888999998873 57889999999998888543 11
Q ss_pred ccCCCccccCcceEEEEEeCC-cc-cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 495 FLGKDTTEKCIELKVLALKGS-YH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~s-yH-G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
...||..++. || |.+.. +... .+ .. |.....++
T Consensus 165 -----------GdeVIvs~~e~~~~ggs~~---i~~~--~~---------~~-------------G~~l~~v~------- 199 (464)
T PRK04311 165 -----------GKEVIVSRGELVEIGGAFR---IPDV--MR---------QA-------------GARLVEVG------- 199 (464)
T ss_pred -----------CCEEEEcchhhhhcCcchh---hHHH--HH---------HC-------------CcEEEEEC-------
Confidence 1356666653 33 32211 1000 00 00 00000000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc--CCc--cccCCHHHHHHHHH
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA--AGG--MHMVDPLFQRILVK 648 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg--~gG--~~~pp~~fl~~Lr~ 648 (719)
+.+. . . .+.+++.|. ++.++|+++-. .. .-| ...+ +++|.+
T Consensus 200 -------~~~~-------t---~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~eI~~ 244 (464)
T PRK04311 200 -------TTNR-------T---H-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAELAA 244 (464)
T ss_pred -------CCCC-------C---C-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHHHHH
Confidence 0110 0 0 244566664 24567777754 22 123 3445 999999
Q ss_pred HHHhcCCcEEEeccccCccccCc---c------ccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 649 ECQNRKIPVIFDEVFTGFWRLGV---E------TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 649 Lc~k~gilLI~DEVqTGfGRtG~---~------~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++||+++|+|.. .|-.|. + ...+....-.|+++++ |.|||. . .|++++++++.+.+.
T Consensus 245 lak~~gi~vivD~g---sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~ 314 (464)
T PRK04311 245 LGKEHGLPVVYDLG---SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLK 314 (464)
T ss_pred HHHHcCCeEEEECC---CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHh
Confidence 99999999999993 333332 1 1111122357999998 999876 2 567889999887664
No 175
>PRK08960 hypothetical protein; Provisional
Probab=98.21 E-value=9e-05 Score=82.22 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=121.8
Q ss_pred CHHHHHHHHHhhhhc--ccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~--~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
.+.+.+++.+.+... .+.. .....+....+++.+.+..+.+ ..+.+++++++++|...++.... ..
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-----~~----- 115 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTA-ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-----DP----- 115 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCC-CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-----CC-----
Confidence 678999988877642 1211 1122344455666665432211 13679999999999998886551 11
Q ss_pred ccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
...|+..+-+|.+...... ..+.. ...++....
T Consensus 116 -----------gd~vlv~~p~y~~~~~~~~-~~g~~----------------------------~~~v~~~~~------- 148 (387)
T PRK08960 116 -----------GKHWLLADPGYPCNRHFLR-LVEGA----------------------------AQLVPVGPD------- 148 (387)
T ss_pred -----------CCEEEEcCCCCcchHHHHH-hcCCe----------------------------EEEEecCcc-------
Confidence 2367877777766432211 11100 011111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
++ + .-| .+.+++.+. ......+|.-| +.-.|... +.+-+++|.++|++||
T Consensus 149 ------~~----~--~~d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~ 198 (387)
T PRK08960 149 ------SR----Y--QLT--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARG 198 (387)
T ss_pred ------cC----C--CCC--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcC
Confidence 00 0 001 244555554 23456677777 45567655 6888999999999999
Q ss_pred CcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+++|+||+...|--.+... ....+.++++ +++|.+| .| +-+|.+++++++.+.+.
T Consensus 199 ~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~ 257 (387)
T PRK08960 199 GHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELE 257 (387)
T ss_pred CEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHH
Confidence 9999999998763222221 1233456766 4999997 78 79999999999887664
No 176
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.20 E-value=4.1e-05 Score=84.87 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=60.3
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc--CCC-ccee--eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL--GCV-PDIA--CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~--gv~-PDIv--tlgK~Lg-g 693 (719)
+.++..| +.-.|.+. +.+-+++|.++|++||+++|+||++..+...|.. ...... +.. .+++ +++|.+| .
T Consensus 167 ~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 243 (393)
T PRK05764 167 ALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMT 243 (393)
T ss_pred EEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCc
Confidence 3455556 44456654 5788999999999999999999999765322321 111111 221 2333 5999998 7
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +.+|++++++++.+.+.
T Consensus 244 G-~RiG~i~~~~~~~~~~~ 261 (393)
T PRK05764 244 G-WRLGYAAGPKELIKAMS 261 (393)
T ss_pred c-ceeEEEecCHHHHHHHH
Confidence 8 68999999999888764
No 177
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.20 E-value=1.9e-05 Score=86.58 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=53.0
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~ 708 (719)
...|.+.+ +++|.++|++||+++|+|.+|+ +|... +....+ .+|++ ++.|.|+|+ .-+|.++++++..
T Consensus 140 ~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~--~~~~~~--~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~ 209 (363)
T TIGR02326 140 TTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP--IDIAEL--HIDYLISSANKCIQGV-PGFGFVIARQAEL 209 (363)
T ss_pred CCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc--cchhhc--CccEEEecCccccccC-CcceEEEECHHHH
Confidence 34678877 8999999999999999999985 65432 223333 47877 578999764 2368899999887
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 210 ~~~~ 213 (363)
T TIGR02326 210 AACK 213 (363)
T ss_pred HHhh
Confidence 7653
No 178
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=98.19 E-value=2.3e-05 Score=87.58 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.++. ..+++..|++..+ ....|.+.| +++|.++|++||+++|+|++|+ +|.. .+..+.+|+.
T Consensus 159 ~~l~~~~~~-----~~~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~gvD 225 (406)
T TIGR01814 159 EDILDTIEK-----NGDDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWGVD 225 (406)
T ss_pred HHHHHHHHh-----cCCCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCCCC
Confidence 345555542 2357889999998 899999998 9999999999999999999996 4443 2334455555
Q ss_pred cceeeehhccCCCccchheeEeCHH
Q 005009 682 PDIACYGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 682 PDIvtlgK~LggG~~Plsavl~~~~ 706 (719)
.-+.+.-|.|.|| |-+++.++++
T Consensus 226 ~~~~s~hK~l~g~--pG~~l~v~~~ 248 (406)
T TIGR01814 226 FACWCTYKYLNAG--PGAGAFVHEK 248 (406)
T ss_pred EEEEcCccccCCC--CCeEEEEehh
Confidence 5455778999887 3344455444
No 179
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=98.18 E-value=3e-05 Score=88.70 Aligned_cols=88 Identities=9% Similarity=-0.046 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
+.+++.+.+. .+ + .||+ |.+ .|..+ + +++++++|++||++|++|+.|. +|-.|.......++
T Consensus 173 d~Le~~l~~~----~p-k--lIv~~~S~-~s~~~---D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~- 235 (475)
T PLN03226 173 DKLEKKAMLF----RP-K--LIIAGASA-YPRDW---D----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASPFE- 235 (475)
T ss_pred HHHHHHHhhc----CC-e--EEEEecCc-CCCcc---C----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCCCC-
Confidence 5677777531 12 2 3344 776 55444 3 6789999999999999999995 55555432212222
Q ss_pred Cccee--eehhccCCCccchheeEeCHHHH
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~~~i~ 708 (719)
..|++ |+.|+|.|- .-|.+++++++.
T Consensus 236 ~~Div~~t~hK~L~GP--~Gg~I~~~~~~~ 263 (475)
T PLN03226 236 YCDVVTTTTHKSLRGP--RGGMIFFRKGPK 263 (475)
T ss_pred CCeEEEecCcccccCC--CceEEEEchhhc
Confidence 47887 677999642 113467677544
No 180
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.18 E-value=4.4e-05 Score=84.92 Aligned_cols=213 Identities=8% Similarity=0.024 Sum_probs=123.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||.. ..|-- .+.+.+|+.+.+....... ...+ ..+...++-+.|+++++...-+.+.|++++++|
T Consensus 18 iyld~a------~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~ 90 (398)
T TIGR03392 18 VYLDSA------ATALK-PQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTES 90 (398)
T ss_pred EEeeCc------cccCC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHH
Confidence 688844 45666 8899999988775432111 0000 112344566777887764223579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..++... ....-+ ...+||..+..|++.......+... .+.
T Consensus 91 l~~~~~~~-~~~~~~----------------~gd~Vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 132 (398)
T TIGR03392 91 INLVAQSY-ARPRLQ----------------PGDEIIVSEAEHHANLIPWLMVAQQ--------------TGA------- 132 (398)
T ss_pred HHHHHHHh-hhccCC----------------CCCEEEECCcchhHHHHHHHHHHHH--------------cCc-------
Confidence 99888765 110001 1236888887777632111111000 000
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.+..+ . -| .+.+++.+.+ +...|++.-+ +...
T Consensus 133 ----~v~~v~~~~~~------------~---------~~--------~~~l~~~i~~--------~t~lv~i~~~-~n~t 170 (398)
T TIGR03392 133 ----KVVKLPIGADL------------L---------PD--------IRQLPELLTP--------RTRILALGQM-SNVT 170 (398)
T ss_pred ----EEEEEecCCCC------------C---------cC--------HHHHHHHhcc--------CceEEEEECc-cccc
Confidence 00111111000 0 00 2456666642 3345555544 6777
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-CccchheeEeCHHHHhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNAVFDS 710 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G~~Plsavl~~~~i~~~ 710 (719)
|.+.+ +++|.++|++||+++|+|++|. +|.. . . +.....+|+++++ |.+|- | +|.+++++++.+.
T Consensus 171 G~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~-~--~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 238 (398)
T TIGR03392 171 GGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P-P--DVQALDIDFYAFSGHKLYGPTG---IGVLYGKTELLEA 238 (398)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C-C--ChhhcCCCEEEEecccccCCCc---eEEEEEcHHHHhh
Confidence 88877 8899999999999999999995 3322 1 1 1122357999998 96652 3 6788899988766
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 239 ~ 239 (398)
T TIGR03392 239 M 239 (398)
T ss_pred C
Confidence 5
No 181
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.15 E-value=5.3e-05 Score=84.61 Aligned_cols=213 Identities=10% Similarity=-0.002 Sum_probs=123.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||..+ .|-- .+.+.+++.+.+....... .... ..+...++-++|+++++...-+.++|+++++|+
T Consensus 25 iYld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------cccC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 7888554 4556 8899999988776532111 0011 123355666777787764113689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++.. ....-+. ..+||..+..||+....-..+... .+.
T Consensus 98 l~~~~~~~-~~~~~~~----------------gd~vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 139 (406)
T PRK09295 98 INLVANSW-GNSNVRA----------------GDNIIISEMEHHANIVPWQMLCAR--------------VGA------- 139 (406)
T ss_pred HHHHHHHh-hhhcCCC----------------cCEEEECcchhhHHHHHHHHHHHH--------------cCc-------
Confidence 99888754 1111111 236777777777632211111000 000
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.+... . -+ .+.+++.+. .+...|++--+ ....
T Consensus 140 ----~v~~v~~~~~~-------------~--------~d--------~~~l~~~i~--------~~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG-------------T--------LQ--------LETLPALFD--------ERTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC-------------C--------CC--------HHHHHHhcC--------CCcEEEEEecc-hhcc
Confidence 00111111000 0 00 245555553 23455555554 6778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-CccchheeEeCHHHHhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNAVFDS 710 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G~~Plsavl~~~~i~~~ 710 (719)
|.+.+ +++|.++|+++|+++|+|++|. +|..- +-.+ ...+|+++++ |.+|- | +|.+.+++++.+.
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 245 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALDCDFYVFSGHKLYGPTG---IGILYVKEALLQE 245 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc--cCch--hcCCCEEEeehhhccCCCC---cEEEEEchHhHhh
Confidence 99887 8999999999999999999995 54331 2222 2357998776 95542 3 6788899988765
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 246 ~ 246 (406)
T PRK09295 246 M 246 (406)
T ss_pred C
Confidence 4
No 182
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.15 E-value=3.2e-05 Score=85.92 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
++-.+++.+.+..... ...+...+|.++|+++.+. +.+++++||++|+..|++.. . -..
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~---~~~--------- 72 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G---IGP--------- 72 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C---CCC---------
Confidence 4556677776654322 1245678999999999874 56888999999999998765 1 011
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (719)
..+||.-...|.+. ..++...|.. ...++.. +.
T Consensus 73 -------Gd~Viv~~~~~~~~-~~~~~~~G~~----------------------------~v~vd~~~~~---------- 106 (379)
T PRK11658 73 -------GDEVITPSLTWVST-LNMIVLLGAT----------------------------PVMVDVDRDT---------- 106 (379)
T ss_pred -------CCEEEECCCcHHHH-HHHHHHcCCE----------------------------EEEEecCCCc----------
Confidence 13677777777663 2222222110 0011110 00
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
++ -| .+.+++.+. .++.+|+ |+ . ..|...+ +++|.++|++||+++
T Consensus 107 --~~---------~d--------~~~l~~~i~--------~~tkav~--~~-~-~~G~~~d----~~~i~~~a~~~gi~v 151 (379)
T PRK11658 107 --LM---------VT--------PEAIEAAIT--------PRTKAII--PV-H-YAGAPAD----LDAIRAIGERYGIPV 151 (379)
T ss_pred --CC---------cC--------HHHHHHhcc--------cCCeEEE--Ee-C-CCCCcCC----HHHHHHHHHHcCCeE
Confidence 00 00 245666654 1344555 43 2 2355544 789999999999999
Q ss_pred EEecccc-CccccCccccccccCCCcceeeeh--hccCCCccchheeEeC-HHHHhhh
Q 005009 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 658 I~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
|.|++|+ |.-..|+.. ..+|+ |+..|+ |.|++| ..|+++++ +++++.+
T Consensus 152 i~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~ 203 (379)
T PRK11658 152 IEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRL 203 (379)
T ss_pred EEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHH
Confidence 9999997 432233222 12343 666554 888776 45556664 6766544
No 183
>PRK09082 methionine aminotransferase; Validated
Probab=98.13 E-value=8.2e-05 Score=82.58 Aligned_cols=220 Identities=16% Similarity=0.094 Sum_probs=123.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E~ 476 (719)
.++|+..|.. .++ . +|.+.+++++.++..... .......+....+++.+.+..+... - +.+.++++|++|...
T Consensus 31 ~~i~l~~g~~--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD-G-PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 5677766533 233 3 688889888776542111 1112233455677777776554211 1 268899999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... ..| .+|+...-+|-+ ...++...|.
T Consensus 107 ~~~~~~-----~~g----------------d~Vli~~p~y~~-~~~~~~~~g~--------------------------- 137 (386)
T PRK09082 107 AILALV-----RPG----------------DEVIVFDPSYDS-YAPAIELAGG--------------------------- 137 (386)
T ss_pred HHHHHc-----CCC----------------CEEEEeCCCchh-hHHHHHHcCC---------------------------
Confidence 887651 111 256665554443 2222222111
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
..+++|... .+ + .-| .+.+++.+. .++.+|++... +.--|..
T Consensus 138 ---~~~~~~~~~------------~~----~--~~d--------~~~l~~~~~--------~~~~~v~l~~p-~NPtG~~ 179 (386)
T PRK09082 138 ---RAVRVALQP------------PD----F--RVD--------WQRFAAAIS--------PRTRLIILNTP-HNPSGTV 179 (386)
T ss_pred ---EEEEEecCc------------cc----c--cCC--------HHHHHHhcC--------ccceEEEEeCC-CCCCCcC
Confidence 111111000 00 0 000 244555553 23445566543 5555665
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc--ccccccCCCcc-ee--eehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PD-Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
. +.+-++++.++|++||+++|+||+...+--.+.. ...+..+..+. ++ +|||.+| .| +-+|.+++.+++++.
T Consensus 180 ~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~ 257 (386)
T PRK09082 180 W-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAE 257 (386)
T ss_pred C-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHH
Confidence 4 5788999999999999999999998654222221 11122222222 33 7899997 67 788999999999877
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 258 ~~ 259 (386)
T PRK09082 258 FR 259 (386)
T ss_pred HH
Confidence 64
No 184
>PRK02948 cysteine desulfurase; Provisional
Probab=98.13 E-value=3.5e-05 Score=85.06 Aligned_cols=207 Identities=12% Similarity=0.048 Sum_probs=120.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||- ...|.- ++.+.+|+.+.+........... ..+...++.+.|+++++.. -+.++|++++++|+
T Consensus 2 ~yld~------a~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDY------AATTPM-SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccC------CCCCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 47773 346667 89999999887764321111011 1234556677788887643 36799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
..+++.+.+... . +.+.|......|.+....+..... .+ .-
T Consensus 74 ~~~~~~~~~~~~-~-----------------~g~~vv~~~~~h~s~~~~~~~~~~---~g-----------~~------- 114 (381)
T PRK02948 74 YLAIQSLLNALP-Q-----------------NKKHIITTPMEHASIHSYFQSLES---QG-----------YT------- 114 (381)
T ss_pred HHHHHHHHHhcc-C-----------------CCCEEEECCcccHHHHHHHHHHHh---CC-----------CE-------
Confidence 999987732110 1 123344455555544333221100 00 00
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++..... ..| .+.+++.+. ++...|+++-+ ....|
T Consensus 115 ----v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 115 ----VTEIPVDKSG-----------LIR------------------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ----EEEEeeCCCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 0011111000 011 245555553 23457777765 78889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-CccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~~Plsavl~~~~i 707 (719)
.+.+ +++|.++|+++|+++|+|++|+ ||.... ..+.+ ..|++ ++.|.+|- | +|++++++++
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~~--~~~~~--~~d~~~~s~~K~~gp~G---~G~l~~~~~~ 216 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLPI--DVFEM--GIDSLSVSAHKIYGPKG---VGAVYINPQV 216 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChhh-cccccc--CcccC--CCCEEEecHHhcCCCCc---EEEEEEcCCC
Confidence 9887 8899999999999999999985 765332 22233 36776 67897652 3 5677777764
No 185
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.13 E-value=4.4e-05 Score=84.82 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
++..+|+.+.+...... ...+...++++.+++..+ .+.+++++||++|...+++.. . -.
T Consensus 11 ~~e~~a~~~~~~~~~~~----~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~---~~---------- 69 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS----GDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D---IQ---------- 69 (376)
T ss_pred HHHHHHHHHHHHcCCcc----CCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C---CC----------
Confidence 45577777766553221 124567899999999876 468999999999998888755 0 01
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (719)
....||....+|.+. ..++...|.. ...++.. +.+
T Consensus 70 ------pGd~Viv~~~t~~~~-~~~~~~~G~~----------------------------~v~vd~d~~~~--------- 105 (376)
T TIGR02379 70 ------PGDEVIMPSYTFVST-ANAFVLRGAK----------------------------IVFVDIRPDTM--------- 105 (376)
T ss_pred ------CcCEEEECCCCcHHH-HHHHHHcCCE----------------------------EEEEecCCCcC---------
Confidence 124677777776653 2222211110 0011111 000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
+ -| .+.+++.+. .++.+|+ |+ . ..|...+ +++|.++|++||+++
T Consensus 106 ---~---------~d--------~~~le~~i~--------~~tk~Ii--p~-~-~~G~~~d----~~~I~~la~~~~i~v 149 (376)
T TIGR02379 106 ---N---------ID--------ETLIESAIT--------HRTKAIV--PV-H-YAGVACD----MDTIMALANKHQLFV 149 (376)
T ss_pred ---C---------CC--------HHHHHHhcC--------cCceEEE--Ee-C-CCCCccC----HHHHHHHHHHCCCEE
Confidence 0 01 244665553 1344554 54 3 3455555 789999999999999
Q ss_pred EEeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEeC-HHHHhhhc
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~~ 712 (719)
|.|++|+ +|.+ +.-...|..-|+.+|+ |.++.| ...|++++. +++++.+.
T Consensus 150 IeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~ 204 (376)
T TIGR02379 150 IEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAE 204 (376)
T ss_pred EEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHH
Confidence 9999995 5432 2222334445889998 999866 356777776 67776543
No 186
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.13 E-value=2.2e-05 Score=87.53 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. .+-.+... .+| .|+++ ++|.++| |
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~g--~Div~~S~sK~l~g~g- 213 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---ELG--CDAVVHSATKYIGGHG- 213 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hcC--CcEEEecCcceecCCC-
Confidence 4568888875 677787776 8999999999999999999984 22222211 123 48774 5699977 5
Q ss_pred cch-heeEeCHHHHhh
Q 005009 696 IPL-AATLATNAVFDS 710 (719)
Q Consensus 696 ~Pl-savl~~~~i~~~ 710 (719)
.++ |+++++++.++.
T Consensus 214 ~~~gG~v~~~~~~i~~ 229 (386)
T PRK06767 214 DVVAGVTICKTRALAE 229 (386)
T ss_pred CceeEEEEeChHHHHH
Confidence 565 678888876654
No 187
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.13 E-value=2.4e-05 Score=87.31 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=55.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
+..+|++|.. ....|.+.+ +++|.++|++||+++|+||++.. +...... .+ ..|++ .++|.++| |
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~~-~~~~~pl---~~--g~Divv~S~sK~~~g~g- 213 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFCT-PALQQPL---KL--GADVVIHSATKYLDGQG- 213 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcc-cccCCch---hh--CCcEEEeecceeecCCc-
Confidence 5678899875 676787776 89999999999999999999842 1111111 12 35877 46899976 4
Q ss_pred cch-heeEeCHHHHhh
Q 005009 696 IPL-AATLATNAVFDS 710 (719)
Q Consensus 696 ~Pl-savl~~~~i~~~ 710 (719)
-.+ |++++++++++.
T Consensus 214 ~~~GG~vv~~~~~~~~ 229 (390)
T PRK08133 214 RVLGGAVVGSKELMEE 229 (390)
T ss_pred ceEeEEEEcCHHHHHH
Confidence 455 456677766543
No 188
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.12 E-value=2.5e-05 Score=87.17 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=59.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||++. .+-.+.. .+...|++ +++|.+|| |
T Consensus 144 ~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g- 211 (391)
T TIGR01328 144 NTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHG- 211 (391)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCC-
Confidence 4568889975 676777766 8999999999999999999985 2222322 23356776 57899986 4
Q ss_pred cc-hheeEeCHHHHhhhc
Q 005009 696 IP-LAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~P-lsavl~~~~i~~~~~ 712 (719)
.+ .|++++++++++.+.
T Consensus 212 ~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 212 DVVAGLICGKAELLQQIR 229 (391)
T ss_pred CceEEEEEcCHHHHHHHH
Confidence 34 356778888776554
No 189
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=98.10 E-value=0.00013 Score=81.01 Aligned_cols=208 Identities=9% Similarity=-0.015 Sum_probs=123.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||..+ .|-- ++.+.+|+.+.+..........+ ..+...++.+.|+++++.. -+.+.|++++++++
T Consensus 19 ~yl~~~~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQI-PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 6777543 5556 89999999988865432110111 1234568888888887743 23699999999988
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc-cc---cCCCCCCCCCCCCCccCCCcccCC
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EA---QAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal-sl---t~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
..++... .... .+ ..+||..+..|.+. ...+ .+ .|..
T Consensus 91 ~~~~~~~-~~~~-~~----------------gd~vl~~~~~~~s~-~~~~~~~~~~~g~~-------------------- 131 (397)
T TIGR01976 91 FLLSRAI-SRRW-GP----------------GDEVIVTRLDHEAN-ISPWLQAAERAGAK-------------------- 131 (397)
T ss_pred HHHHHHH-HhcC-CC----------------CCEEEEcCCchHhH-HHHHHHHHHhcCCE--------------------
Confidence 7666554 1111 11 13677766655542 2111 11 1100
Q ss_pred CcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 551 PTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++.+. .+ ..+ .+.+++.+. ++..+|++.-+
T Consensus 132 --------~~~~~~~~~~~-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~- 165 (397)
T TIGR01976 132 --------VKWARVDEATG-----------ELH------------------PDDLASLLS--------PRTRLVAVTAA- 165 (397)
T ss_pred --------EEEEeccccCC-----------CcC------------------HHHHHHhcC--------CCceEEEEeCC-
Confidence 00111110 00 000 245665553 24566777665
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i 707 (719)
....|.+.+ +++|.++|++||+++|+||+|. +| .+. ..... ..+|++ ++.|.+| .++|.+++++++
T Consensus 166 ~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~~-~~~~~--~~~d~~~~s~~K~~g---~~~G~l~~~~~~ 233 (397)
T TIGR01976 166 SNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HGL-IDVQA--TGADFLTCSAYKFFG---PHMGILWGRPEL 233 (397)
T ss_pred CCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-ccC-CCHHH--cCCCEEEEechhhcC---CceEEEEEcHHH
Confidence 677888877 9999999999999999999995 32 121 11222 347877 6789874 357889999998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+.+.
T Consensus 234 ~~~l~ 238 (397)
T TIGR01976 234 LMNLP 238 (397)
T ss_pred HhhCC
Confidence 77654
No 190
>PRK10534 L-threonine aldolase; Provisional
Probab=98.09 E-value=6.5e-05 Score=81.33 Aligned_cols=68 Identities=13% Similarity=-0.006 Sum_probs=51.6
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 401 yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.||+.| +.+-| - +|.+.+|+.+...... .+ ..+...+|.++|++..+ .+.+.++++|++|+..++.
T Consensus 1 ~~~~~~---~~~~~-p-~~~~~~a~~~~~~~~~-----~Y~~~~~~~~L~~~la~~~g---~~~~~v~~~g~~a~~~~l~ 67 (333)
T PRK10534 1 MIDLRS---DTVTR-P-SRAMLEAMMAAPVGDD-----VYGDDPTVNALQDYAAELSG---KEAALFLPTGTQANLVALL 67 (333)
T ss_pred Cccccc---ccCCC-C-CHHHHHHHHhccCCCc-----ccCCCHHHHHHHHHHHHHhC---CCeEEEeCchHHHHHHHHH
Confidence 367877 66677 6 8999999987554322 23 35678899999999987 4677899999999888887
Q ss_pred HH
Q 005009 480 MA 481 (719)
Q Consensus 480 lA 481 (719)
..
T Consensus 68 ~~ 69 (333)
T PRK10534 68 SH 69 (333)
T ss_pred Hh
Confidence 54
No 191
>PRK07324 transaminase; Validated
Probab=98.08 E-value=8.6e-05 Score=82.16 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=61.7
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-e--eeehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-I--ACYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-I--vtlgK~Lg-gG~ 695 (719)
+.+|++... +.-.|.+. +++.+++|.++|++||+++|+||++.++...+..... ....+. | -+++|.+| .|
T Consensus 154 ~kli~i~~p-~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~~I~~~s~SK~~~~~G- 228 (373)
T PRK07324 154 TKLICINNA-NNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEKGISTNSMSKTYSLPG- 228 (373)
T ss_pred CcEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh--hhccCCEEEEecchhhcCCcc-
Confidence 334555432 44456544 7889999999999999999999999887554432211 112222 2 37999998 68
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++++.+.
T Consensus 229 ~RiG~i~~~~~li~~~~ 245 (373)
T PRK07324 229 IRVGWIAANEEVIDILR 245 (373)
T ss_pred ceeEEEecCHHHHHHHH
Confidence 68899999998887664
No 192
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.08 E-value=4.4e-05 Score=84.33 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=59.2
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~P 697 (719)
.++..|. .-. |.+. +.+-++++.++|+ +|++||+||+...|+..|...... ...|+++ +|||.+| .| +.
T Consensus 159 i~l~~P~-NPt-G~~~-~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lR 231 (369)
T PRK08153 159 VYLANPD-NPM-GSWH-PAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-AR 231 (369)
T ss_pred EEEeCCC-CCC-CCCC-CHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hh
Confidence 3345784 444 6655 5566666667776 499999999998886655432221 1234544 8999998 78 79
Q ss_pred hheeEeCHHHHhhhcC
Q 005009 698 LAATLATNAVFDSFVG 713 (719)
Q Consensus 698 lsavl~~~~i~~~~~~ 713 (719)
+|.+++++++++.+..
T Consensus 232 iG~~v~~~~~~~~l~~ 247 (369)
T PRK08153 232 VGYAIGAPGTIKAFDK 247 (369)
T ss_pred eeeeecCHHHHHHHHH
Confidence 9999999999887653
No 193
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.08 E-value=0.0002 Score=79.62 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g 679 (719)
+.+++.+.+ ..+++.++++. | +.-.|... +.+-+++|.++|++||+++|+||++..|--.|.. .....+
T Consensus 154 ~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~- 224 (391)
T PRK07309 154 EMLEKAILE-----QGDKLKAVILNYP--ANPTGVTY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY- 224 (391)
T ss_pred HHHHHHhhc-----cCCCeEEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh-
Confidence 456666652 23456667666 6 45556654 5677999999999999999999999866322421 111111
Q ss_pred CCcc--ee--eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 680 CVPD--IA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PD--Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+| |+ +++|.+| .| +-+|.+++++++++.+.
T Consensus 225 -~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~ 260 (391)
T PRK07309 225 -LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLI 260 (391)
T ss_pred -ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHH
Confidence 233 33 6999997 67 68889999999987764
No 194
>PRK07550 hypothetical protein; Provisional
Probab=98.06 E-value=0.00021 Score=79.22 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc---ccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~---a~e~~ 678 (719)
+.+++.+++ ...+.+++-| ..-.|... +.+.+++|.++|++||+++|.||+...| +.+... .+...
T Consensus 154 ~~l~~~~~~-------~~~~v~~~~P--~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~ 222 (386)
T PRK07550 154 AAAEALITP-------RTRAIALVTP--NNPTGVVY-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADP 222 (386)
T ss_pred HHHHHHhcc-------cCcEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCC
Confidence 456666642 2234455556 34456644 6889999999999999999999999876 222111 11111
Q ss_pred CCCcc---eeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 679 GCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 679 gv~PD---IvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+...+ +.+++|.+| .| +.+|++++++++++.+.
T Consensus 223 ~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~ 259 (386)
T PRK07550 223 DWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIE 259 (386)
T ss_pred CccccEEEEecchhhccCcc-cceEeeecCHHHHHHHH
Confidence 11122 348999998 78 68999999998887654
No 195
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.04 E-value=4.7e-05 Score=85.16 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=104.0
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+....|.+
T Consensus 61 r~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~-----~~G----------------D~Vl~~~~~y~~ 116 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLV-----KAG----------------DDVLIPDNAYGP 116 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHh-----CCC----------------CEEEEecCCccc
Confidence 34577788999999998873 689999999999999997652 222 367777777765
Q ss_pred Ccccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHH
Q 005009 519 DTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 519 ~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
. ...+. ... . . |.....+ +. .+
T Consensus 117 ~-~~~~~~~~~-----~---------~-------------Gi~v~~v-----------------d~-------~~----- 139 (394)
T PRK07050 117 N-RDHGEWLAR-----D---------F-------------GITVRFY-----------------DP-------LI----- 139 (394)
T ss_pred H-HHHHHHHHH-----h---------c-------------CeEEEEE-----------------CC-------CC-----
Confidence 2 21110 000 0 0 0000000 00 00
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.+. .+..+|++|-. ..-.| +..-+++|.++|+++|+++|+||++.- |..+.--.
T Consensus 140 ---~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a~----~~~~~~l~ 199 (394)
T PRK07050 140 ---GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYSA----GLAFKPFE 199 (394)
T ss_pred ---HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCccc----ccccCHHH
Confidence 123555553 24568888864 34333 555699999999999999999999852 22211112
Q ss_pred cCCCccee--eehhccCCCc-cchheeEe-CHHHHhhh
Q 005009 678 LGCVPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 678 ~gv~PDIv--tlgK~LggG~-~Plsavl~-~~~i~~~~ 711 (719)
+| .||+ .+.|.++||- .+.|++++ ++++++.+
T Consensus 200 ~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~ 235 (394)
T PRK07050 200 HG--VDISVQALTKYQSGGSDVLMGATITADAELHAKL 235 (394)
T ss_pred cC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHH
Confidence 23 4877 4899997531 46777776 56666544
No 196
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.04 E-value=2.9e-05 Score=76.03 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred cEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C---HH
Q 005009 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N---EV 295 (719)
Q Consensus 222 d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~---~~ 295 (719)
|++||.+.+++.. .........+ -+|+|+.....++..+...++.++..+.+..++|+|++... . .+
T Consensus 64 d~viiD~p~~~~~------~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER------GFITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH------HHHHHHHhCC-cEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 8999999776432 1222233333 48889999999999999999999888888999999998221 1 23
Q ss_pred HHHHhhcCCCcEEe-cCCCCC
Q 005009 296 PLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.+++.+ +.|+++ ||+.+.
T Consensus 137 ~~~~~~--~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEIL--GVPLLGVIPEDPA 155 (179)
T ss_pred HHHHHh--CCCEEEEecCCHH
Confidence 455555 899988 887553
No 197
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.03 E-value=0.00029 Score=78.95 Aligned_cols=231 Identities=14% Similarity=0.066 Sum_probs=132.2
Q ss_pred CCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-CC-CeEEEeCC
Q 005009 394 KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WA-SRAYFSDN 469 (719)
Q Consensus 394 G~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-~~-~rv~f~~S 469 (719)
|.|.....+||..|.-+ .+ .- +|.+.+++.+.+........ .....+....+++.+.+..+.. .- +.++++++
T Consensus 34 ~~~~~~~~i~l~~g~~~-~~-~p-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~G 110 (405)
T PRK06207 34 GEPLPGRPVDFSHGDVD-AH-EP-TPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPG 110 (405)
T ss_pred CCcCCCCceecCCcCCC-CC-CC-CHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 44444467777765432 22 23 57888888887754321111 1223445667777777754421 12 57999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
+++|...+++... .. ...|+...-+|.+....+ ...|.
T Consensus 111 a~~al~~~~~~l~-----~~----------------Gd~Vlv~~P~y~~~~~~~-~~~g~-------------------- 148 (405)
T PRK06207 111 TQGALFLAVAATV-----AR----------------GDKVAIVQPDYFANRKLV-EFFEG-------------------- 148 (405)
T ss_pred cHHHHHHHHHHhc-----CC----------------CCEEEEeCCCchhHHHHH-HHcCC--------------------
Confidence 9999998888651 11 236888888887633211 11111
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
..+++|-.+ .+.+..+ .-| .+.+++.+.+ ..-+.++.-|
T Consensus 149 ----------~v~~v~~~~------------~~~~~~~--~~d--------~~~l~~~~~~-------~~k~v~l~~P-- 187 (405)
T PRK06207 149 ----------EMVPVQLDY------------LSADKRA--GLD--------LDQLEEAFKA-------GVRVFLFSNP-- 187 (405)
T ss_pred ----------EEEEEeccc------------cCcccCC--CcC--------HHHHHHhhhh-------cCeEEEECCC--
Confidence 011111000 0000000 001 2456655542 1223455567
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc-ee---eehhccC-CCccchheeEe
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD-Iv---tlgK~Lg-gG~~Plsavl~ 703 (719)
+.-.|.+. +.+-+++|.++|++||+++|.||+..-|--.|..+ ....+...+| ++ +|+|.++ .| +-+|.+++
T Consensus 188 ~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~ 265 (405)
T PRK06207 188 NNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFG 265 (405)
T ss_pred CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEc
Confidence 44456655 68889999999999999999999998763334321 1112223334 22 6899998 78 68999999
Q ss_pred CHHHHhhhc
Q 005009 704 TNAVFDSFV 712 (719)
Q Consensus 704 ~~~i~~~~~ 712 (719)
++++++.+.
T Consensus 266 ~~~l~~~~~ 274 (405)
T PRK06207 266 SPAIIDRME 274 (405)
T ss_pred CHHHHHHHH
Confidence 999887764
No 198
>PLN00175 aminotransferase family protein; Provisional
Probab=98.03 E-value=0.0002 Score=80.56 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=63.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCCcc-ee--eehhccC-C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPD-IA--CYGKLLT-G 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~PD-Iv--tlgK~Lg-g 693 (719)
++.+|++..- +.-.|.+. +.+.+++|.++|++||+++|.||+...|-.-+..... +..+..+. |+ +|||.++ .
T Consensus 187 ~~k~i~i~~p-~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~ 264 (413)
T PLN00175 187 KTRAILINTP-HNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLT 264 (413)
T ss_pred CceEEEecCC-CCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCc
Confidence 3455666543 56667654 7899999999999999999999999876322322111 11122222 33 7999998 6
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +-+|.+++++++++.+.
T Consensus 265 G-~RiG~~v~~~~l~~~l~ 282 (413)
T PLN00175 265 G-WKIGWAIAPPHLTWGVR 282 (413)
T ss_pred c-hheeeeEeCHHHHHHHH
Confidence 8 78999999999887664
No 199
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.02 E-value=4.9e-05 Score=81.37 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+.+ ++..-+.++..|. . .|...+ +++|.++|++||+++|+||++...-+.+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~-~--~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT-Y--YGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC-C--CCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 556777752 2233345556674 3 577766 899999999999999999999642222221111112235
Q ss_pred ccee--eehhccCC
Q 005009 682 PDIA--CYGKLLTG 693 (719)
Q Consensus 682 PDIv--tlgK~Lgg 693 (719)
.|++ .+.|.|+|
T Consensus 211 ~div~~S~hK~l~g 224 (294)
T cd00615 211 ADIVVQSTHKTLPA 224 (294)
T ss_pred CcEEEEchhcccch
Confidence 6887 57899854
No 200
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.02 E-value=5.2e-05 Score=85.06 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=59.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
++.+|++|.. ..-.|...+ +++|.++|++||+++|+|+++.. +..+.. .+...|++ .+.|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 4568888865 667787776 89999999999999999999963 222322 23356877 47899986 31
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
.=.|+++.++++++.+.
T Consensus 219 ~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 219 ITAGLVVGGKALADRIR 235 (403)
T ss_pred eeEEEEEcCHHHHHHHH
Confidence 23466777888877654
No 201
>PRK08361 aspartate aminotransferase; Provisional
Probab=98.00 E-value=0.00022 Score=79.17 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=60.0
Q ss_pred EEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee--eehhccC-CC
Q 005009 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GG 694 (719)
Q Consensus 620 iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv--tlgK~Lg-gG 694 (719)
+.++++. | +.-.|... |.+-+++|.++|+++++++|+||+...|--.+. ......+....+++ +++|.+| .|
T Consensus 167 ~~~v~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 243 (391)
T PRK08361 167 TRMIVINYP--NNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG 243 (391)
T ss_pred cEEEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH
Confidence 4445554 5 55567654 678889999999999999999999976522221 11111111123444 7899998 67
Q ss_pred ccchheeEeCHHHHhhh
Q 005009 695 VIPLAATLATNAVFDSF 711 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~ 711 (719)
+-+|.+++++++.+.+
T Consensus 244 -lRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 244 -WRLGFVIAPEQVIKDM 259 (391)
T ss_pred -hhhhhhccCHHHHHHH
Confidence 6888899999888765
No 202
>PRK07568 aspartate aminotransferase; Provisional
Probab=97.99 E-value=0.00022 Score=79.10 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=60.8
Q ss_pred EEEE-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc-CCCccee---eehhccCC
Q 005009 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDIA---CYGKLLTG 693 (719)
Q Consensus 620 iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~-gv~PDIv---tlgK~Lgg 693 (719)
+.+| +.-| +.-.|.+ .+.+-+++|.++|+++|+++|+||+..+|...|.. .....+ +..+.++ +++|.+|.
T Consensus 163 ~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~ 239 (397)
T PRK07568 163 TKAILISNP--GNPTGVV-YTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSA 239 (397)
T ss_pred ceEEEEECC--CCCCCcc-CCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccC
Confidence 3444 4456 4445654 46777999999999999999999999988655542 111111 2233444 78999984
Q ss_pred -CccchheeEeC-HHHHhhh
Q 005009 694 -GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 694 -G~~Plsavl~~-~~i~~~~ 711 (719)
| +.+|.+++. +++.+.+
T Consensus 240 ~G-~R~G~~~~~~~~~~~~~ 258 (397)
T PRK07568 240 CG-ARIGCLISKNKELIAAA 258 (397)
T ss_pred CC-cceEEEecCCHHHHHHH
Confidence 8 799999984 6777654
No 203
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=97.99 E-value=0.00013 Score=80.69 Aligned_cols=188 Identities=11% Similarity=0.033 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
++-.+++.+.+...... ..+...+|.+.++++++. +.+++++||++|+..|++.. . -+.
T Consensus 10 ~~~~~~v~~~~~~~~~~-----~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~---~~~--------- 68 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT-----QGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G---VGP--------- 68 (380)
T ss_pred HHHHHHHHHHHhcCCcc-----CChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C---CCC---------
Confidence 44566777766553221 234567899999998874 46677889999999998765 1 111
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~ 577 (719)
..+||.....|++.. .++...|.. ...++. |+.+
T Consensus 69 -------Gd~Viv~~~~~~~~~-~~~~~~G~~----------------------------~~~~~~~~~~~--------- 103 (380)
T TIGR03588 69 -------GDRVWTTPITFVATA-NCALYCGAK----------------------------VDFVDIDPDTG--------- 103 (380)
T ss_pred -------CCEEEeCCcchHHHH-HHHHHcCCE----------------------------EEEEecCCCcC---------
Confidence 136777777776532 211111110 000111 1000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
..| .+.+++.+.+. ...++.+|++ + ...|...+ ++++.++|++||+++
T Consensus 104 --~~d------------------~~~l~~~i~~~----~~~~t~~v~~--~--~~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 --NID------------------EDALEKKLAAA----KGKLPKAIVP--V--DFAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred --CcC------------------HHHHHHHhhcc----cCCCceEEEE--e--CCCCccCC----HHHHHHHHHHcCCEE
Confidence 001 25566666521 1124445552 2 22355544 899999999999999
Q ss_pred EEeccccCccccCccccccccCC--Ccceeeeh----hccCCCccchheeEeC-HHHHhh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv--~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~ 710 (719)
|.|++|+ +|-+ +.-...|. --|+++++ |.++.| ..|++++. +++++.
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~ 205 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAER 205 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHH
Confidence 9999997 4321 22223343 45999877 888654 34455554 555553
No 204
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.99 E-value=0.00015 Score=79.60 Aligned_cols=205 Identities=13% Similarity=0.035 Sum_probs=111.2
Q ss_pred CHHHHHHHHHhhhhc-ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~-~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|.+.+|+....... +.........+...++.+.|+++++.+ .+.++++++|++|+..++..+ +......
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~------- 103 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLAREE------- 103 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHhcc-------
Confidence 888888887765432 111100112344578888888888743 245788999999999998876 3321110
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
.....|+..+.+|.+ ...+....|.. ...++.+..+
T Consensus 104 -------~~g~~vl~~~~~h~~-~~~~~~~~G~~----------------------------~~~v~~~~~~-------- 139 (373)
T TIGR03812 104 -------KRTPNIIVPESAHFS-FEKAAEMLGLE----------------------------LRYAPLDEDY-------- 139 (373)
T ss_pred -------CCCcEEEECCcchHH-HHHHHHHcCCe----------------------------EEEEeeCCCC--------
Confidence 011356666655543 11111111100 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ ..++.+++.|. ...|.+.+ +++|.++|+++|++
T Consensus 140 ---~~d------------------~~~l~~~l~~-------~~~~vv~~~~~--~~tG~~~~----~~~i~~l~~~~~~~ 185 (373)
T TIGR03812 140 ---TVD------------------VKDVEDLIDD-------NTIGIVGIAGT--TELGQIDD----IEELSKIALENGIY 185 (373)
T ss_pred ---CcC------------------HHHHHHHHhh-------CcEEEEEECCC--CCCCccCC----HHHHHHHHHHcCCe
Confidence 001 2556666652 23556667663 55688777 99999999999999
Q ss_pred EEEeccccCccccC--cc-ccccccCC---Ccceeee--hhccCCCccchheeE-eCHHHHhhh
Q 005009 657 VIFDEVFTGFWRLG--VE-TTADLLGC---VPDIACY--GKLLTGGVIPLAATL-ATNAVFDSF 711 (719)
Q Consensus 657 LI~DEVqTGfGRtG--~~-~a~e~~gv---~PDIvtl--gK~LggG~~Plsavl-~~~~i~~~~ 711 (719)
+|+||+|.++ -.+ .+ .......+ ..|.+++ -|-+.++ .|.|+++ .++++.+.+
T Consensus 186 livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l 247 (373)
T TIGR03812 186 LHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYL 247 (373)
T ss_pred EEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhh
Confidence 9999999754 111 00 00001111 2355543 3733334 4676665 577777665
No 205
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.98 E-value=0.00018 Score=80.04 Aligned_cols=92 Identities=12% Similarity=0.003 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~gv 680 (719)
+.+++.+.+ ...-..++..|. .+ ...+ +++|.++|++||+++|+||+| .|+--.|... ..+.
T Consensus 151 ~~l~~~i~~------~~~~~v~~~~~~-~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~- 213 (402)
T cd00378 151 DALEKMALE------FKPKLIVAGASA-YP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP- 213 (402)
T ss_pred HHHHHHHHh------CCCCEEEecCcc-cC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-
Confidence 456666642 112233445675 43 3333 889999999999999999997 4432223211 1111
Q ss_pred Cccee--eehhccCCCccchheeEeCH-HHHhhhc
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~~-~i~~~~~ 712 (719)
..|++ +++|+++ | .+.|++++++ ++.+.+.
T Consensus 214 ~~dv~~~s~sK~l~-G-~~gg~i~~~~~~~~~~l~ 246 (402)
T cd00378 214 GADVVTTTTHKTLR-G-PRGGLILTRKGELAKKIN 246 (402)
T ss_pred CCcEEEeccccCCC-C-CCceEEEeccHHHHHHHH
Confidence 35876 6789994 4 4677788877 7776653
No 206
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.97 E-value=3.7e-05 Score=76.25 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=46.2
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCC--CcEEEEEEccCCCCCHH
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~--~~v~gvi~N~~~~~~~~ 295 (719)
+|++||++.+|+... ..-+.. .---+|+|.....-.+..+...++.++..+ .+++++|+|++...+..
T Consensus 95 yD~iiiD~~~~~~~~------~~~~l~-~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP------VRNALA-AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNES 164 (195)
T ss_dssp SSEEEEEECSSSSHH------HHHHHH-TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHH
T ss_pred ccceeecccccccHH------HHHHHH-hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccc
Confidence 999999997765444 212222 222256666666666888888888888766 56899999999555433
No 207
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.96 E-value=0.0002 Score=75.80 Aligned_cols=63 Identities=21% Similarity=0.091 Sum_probs=47.9
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEcc
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFED 288 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~ 288 (719)
.||+|||.+. |........-++...+ -||+|+..+.-++..+..+++.++..|.+++|+|+|+
T Consensus 212 ~yD~ViiD~p-----p~~~~~d~~~~~~~~d-~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTP-----SAEHSSDAQIVATRAR-GTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCC-----CcccccHHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3999999993 3222122333444443 6788999888899999999999999999999999996
No 208
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.96 E-value=8.5e-05 Score=80.97 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=64.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChH---HHHHHHHHHHHhCC--CcEEEEEEccCC-CCC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHG-LVN 293 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~--~~v~gvi~N~~~-~~~ 293 (719)
.+|++||-..|++.++. ....+++.+.--||+|.....-++ +.+..+++.++..| .++.|+|+|+.. ...
T Consensus 147 ~~DyVliD~~gdv~~gg----f~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~ 222 (329)
T cd02033 147 DFDYVLLDFLGDVVCGG----FGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE 222 (329)
T ss_pred cCCEEEEecCCcceecc----ccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcch
Confidence 38999999988665321 123333334335788887777777 45677888888764 678999999984 333
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 294 ~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+.+.+.+ ++|++| ||+.+...
T Consensus 223 ie~~ae~l--gi~vLg~IP~D~~V~ 245 (329)
T cd02033 223 AQAFAAHA--GIPILAAIPADEELR 245 (329)
T ss_pred HHHHHHHh--CCCEEEECCCCHHHH
Confidence 45555556 999999 99987643
No 209
>PRK06234 methionine gamma-lyase; Provisional
Probab=97.96 E-value=8.1e-05 Score=83.40 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=105.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.++.++||++|+..++...+ +.| ..||... .+||.
T Consensus 61 ~~~p~~~~Le~~iA~~~g~---~~~l~~~sG~~Ai~~al~~ll-----~~G----------------d~Vl~~~-~~y~~ 115 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGG---EAAVVAASGMGAISSSLWSAL-----KAG----------------DHVVASD-TLYGC 115 (400)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CCC----------------CEEEEec-Cccch
Confidence 3456678999999999873 578999999999988876441 111 2566555 45554
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+.......- .. . |.....++ ..|
T Consensus 116 ~~~~~~~~~-~~------------~-------------G~~v~~vd--------------~~d----------------- 138 (400)
T PRK06234 116 TFALLNHGL-TR------------Y-------------GVEVTFVD--------------TSN----------------- 138 (400)
T ss_pred HHHHHHHHH-hh------------C-------------CeEEEEEC--------------CCC-----------------
Confidence 443321100 00 0 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.+. .+..+|++|.. ..-.|.+.+ +++|.++|++| |+++|+||++.. +-.+..
T Consensus 139 -~e~l~~~i~--------~~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~-~~~~~~----- 198 (400)
T PRK06234 139 -LEEVRNALK--------ANTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCT-PYIQRP----- 198 (400)
T ss_pred -HHHHHHHhc--------cCCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCc-hhcCCc-----
Confidence 244566654 24568888975 677787776 99999999997 999999999852 222221
Q ss_pred cCCCccee--eehhccCC-Cccch-heeEeCHHHHhhhc
Q 005009 678 LGCVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDSFV 712 (719)
Q Consensus 678 ~gv~PDIv--tlgK~Lgg-G~~Pl-savl~~~~i~~~~~ 712 (719)
.+...||+ .++|.++| | -.+ |++++++++++.+.
T Consensus 199 l~~g~Divv~S~sK~l~g~g-~~~gG~v~~~~~~~~~l~ 236 (400)
T PRK06234 199 LQLGADVVVHSATKYLNGHG-DVIAGFVVGKEEFINQVK 236 (400)
T ss_pred hhhCCcEEEeeccccccCCC-CceeEEEEecHHHHHHHH
Confidence 22356887 46899976 4 233 67888888877653
No 210
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=97.95 E-value=0.00024 Score=79.01 Aligned_cols=214 Identities=9% Similarity=-0.014 Sum_probs=119.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-cccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||.. ..|-- .+.+.+|+.+.+.... ....... ..+...++-+.|+++++...-+.++|++++++|
T Consensus 20 ~yld~~------~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~ 92 (403)
T TIGR01979 20 VYLDSA------ATSQK-PQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTES 92 (403)
T ss_pred EEEeCc------cccCC-CHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHH
Confidence 688844 35666 7889999887665421 1110000 112344666778887764312479999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..++........ . ....||.....|++.......+... .+. .
T Consensus 93 l~~~~~~~~~~~~-~----------------~g~~vl~~~~~~~s~~~~~~~~~~~--------------~g~--~---- 135 (403)
T TIGR01979 93 INLVAYSWGDSNL-K----------------AGDEIVISEMEHHANIVPWQLLAER--------------TGA--T---- 135 (403)
T ss_pred HHHHHHHhhhhcC-C----------------CCCEEEECcchhhHHHHHHHHHHHh--------------cCc--E----
Confidence 9888876511111 1 1235666666555422111011000 000 0
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...++....+ . -+ .+.+++.+. +++.+|++.-+ +...
T Consensus 136 -----~~~v~~~~~~-------------~--------~~--------~~~l~~~i~--------~~~~lv~~~~~-~~~t 172 (403)
T TIGR01979 136 -----LKFIPLDDDG-------------T--------LD--------LDDLEKLLT--------EKTKLVAITHV-SNVL 172 (403)
T ss_pred -----EEEEecCCCC-------------C--------CC--------HHHHHHHhc--------cCCeEEEEEcc-cccc
Confidence 0011111000 0 00 245565554 24556666655 7778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|...+ +++|.++|++||+++|+|++|. +|-. .+... ...+|+++ +.|.+|. .-+|++.+++++.+.+
T Consensus 173 G~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp--~G~g~l~~~~~~~~~~ 241 (403)
T TIGR01979 173 GTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDFYVFSGHKMYGP--TGIGVLYGKEELLEQM 241 (403)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCEEEEecccccCC--CCceEEEEchHHHhcC
Confidence 88887 8999999999999999999995 4321 11122 23579875 4597652 1267888998887654
No 211
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.95 E-value=0.00015 Score=79.64 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=53.3
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i 707 (719)
....|...+ +++|.++|+++|+++|+|.+| +||... +.... ..+|++ ++.|.+.|. .-+|.+++++++
T Consensus 141 ~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~~--~~~~~--~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~ 210 (368)
T PRK13479 141 ETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAIP--IDIAE--LGIDALISSANKCIEGV-PGFGFVIARRSE 210 (368)
T ss_pred cCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCcc--ccccc--cCceEEEecCccccccC-CCceEEEECHHH
Confidence 345677777 899999999999999999888 465322 22222 247876 578988653 225889999998
Q ss_pred HhhhcC
Q 005009 708 FDSFVG 713 (719)
Q Consensus 708 ~~~~~~ 713 (719)
.+.+..
T Consensus 211 ~~~~~~ 216 (368)
T PRK13479 211 LEACKG 216 (368)
T ss_pred HHHhhc
Confidence 877654
No 212
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=97.94 E-value=6.9e-05 Score=83.95 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.++.++||++|+..++...+ +.| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all-----~~G----------------D~Vi~~~~~y~~~ 116 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFL-----KPG----------------DRVVSIKDTYGGT 116 (398)
T ss_pred CCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCchHHH
Confidence 4577888999999999873 578899999999888876541 111 3688888887662
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+.-. .. . .+ .....++ ..|
T Consensus 117 -~~~~~~~-~~---~---------~G-------------i~v~~vd--------------~~d----------------- 138 (398)
T PRK08249 117 -NKIFTEF-LP---R---------MG-------------VDVTLCE--------------TGD----------------- 138 (398)
T ss_pred -HHHHHHH-Hh---h---------CC-------------eEEEEcC--------------CCC-----------------
Confidence 1111100 00 0 00 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|-. ..-.|.+.+ +++|.++|++||+++|+||++..+ -.+. ...
T Consensus 139 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l~ 198 (398)
T PRK08249 139 -HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PLA 198 (398)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----chh
Confidence 244555554 24568888865 566787776 899999999999999999998632 1111 122
Q ss_pred CCccee--eehhccCC-Cccch-heeEeCHHHHhhh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Pl-savl~~~~i~~~~ 711 (719)
...|++ +++|.++| | --+ |++++++++++.+
T Consensus 199 ~~~Divv~S~sK~l~g~~-~~~gG~vv~~~~l~~~l 233 (398)
T PRK08249 199 LGADLVIHSATKFLSGHA-DALGGVVCGSKELMEQV 233 (398)
T ss_pred hCCCEEeccCceecCCCC-CceEEEEECCHHHHHHH
Confidence 346776 57899986 3 223 5566777777654
No 213
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=97.93 E-value=0.00011 Score=82.51 Aligned_cols=167 Identities=17% Similarity=0.093 Sum_probs=103.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+. +.+++++||+.|+..++.... ..| ..||.... .||.
T Consensus 67 ~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all-----~~G----------------d~Vl~~~~-~~~~ 121 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALL-----GAG----------------DRLVAARS-LFGS 121 (403)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHh-----CCC----------------CEEEEccC-Ccch
Confidence 4567788999999999873 589999999999999886541 111 25665554 4554
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+.......- ...+ .....++ ..|
T Consensus 122 t~~~~~~~~-------------~~~G-------------~~v~~vd--------------~~d----------------- 144 (403)
T PRK07810 122 CFVVCNEIL-------------PRWG-------------VETVFVD--------------GED----------------- 144 (403)
T ss_pred HHHHHHHHH-------------HHcC-------------cEEEEEC--------------CCC-----------------
Confidence 443221100 0000 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. ..-.|.+.. +++|.++|+++|+++|+||++. .+-..... .+|
T Consensus 145 -~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~~---~~g 206 (403)
T PRK07810 145 -LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRGL---PLG 206 (403)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hcC
Confidence 244666664 24678999976 677787776 9999999999999999999985 21111111 223
Q ss_pred CCccee--eehhccCC-Cccch-heeEeCHHHHh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFD 709 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Pl-savl~~~~i~~ 709 (719)
.|++ .+.|.++| | -.+ |+++++++...
T Consensus 207 --aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~ 237 (403)
T PRK07810 207 --ADVVVYSGTKHIDGQG-RVLGGAILGDREYID 237 (403)
T ss_pred --CcEEEccCCceecCCc-CceeEEEEeChHHHH
Confidence 5887 47899975 4 234 56777776543
No 214
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=97.92 E-value=8.7e-05 Score=82.63 Aligned_cols=81 Identities=17% Similarity=0.022 Sum_probs=53.7
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~ 696 (719)
++.+|++|-. ..-.|.+.+ +++|.++|++||+++|+|++++.. -.+. -.+...|++++ .|.++|.--
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-----p~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-----PLLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-----ccccCCCEEEecCceeccCCcc
Confidence 5678999865 566677666 889999999999999999999632 1122 12345688865 599976201
Q ss_pred chh-eeEeC-HHHHhh
Q 005009 697 PLA-ATLAT-NAVFDS 710 (719)
Q Consensus 697 Pls-avl~~-~~i~~~ 710 (719)
.++ +++++ +++++.
T Consensus 203 ~~gG~vv~~~~~~~~~ 218 (380)
T PRK06176 203 VVAGLVTTNNEALAQE 218 (380)
T ss_pred ceeeEEEecHHHHHHH
Confidence 233 35553 455443
No 215
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=97.91 E-value=8.4e-05 Score=80.53 Aligned_cols=76 Identities=13% Similarity=-0.032 Sum_probs=46.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Cccee--eehhccCCCccc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGGVIP 697 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIv--tlgK~LggG~~P 697 (719)
..++..| ....|.+.+ +++|.++|++||+++|+|+++.++.--.........++ ..|.+ ++.|.++++ ..
T Consensus 151 ~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g 223 (345)
T cd06450 151 MVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LG 223 (345)
T ss_pred EEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cc
Confidence 3344555 355677655 89999999999999999999975421111000001111 35754 678988765 34
Q ss_pred hheeEe
Q 005009 698 LAATLA 703 (719)
Q Consensus 698 lsavl~ 703 (719)
+|.+++
T Consensus 224 ~g~~~~ 229 (345)
T cd06450 224 CSAVLV 229 (345)
T ss_pred hHHHHH
Confidence 554443
No 216
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=97.89 E-value=0.00012 Score=81.78 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=102.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.++.++||++|+..++...+ +. ...||.....|++
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll-----~~----------------GD~Vlv~~~~y~~- 104 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLL-----KA----------------GDRVVLPMEAYGT- 104 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchh-
Confidence 4566788899999999873 577888999999999987552 11 1357776666655
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+.... . .+ . . + .+.+. +
T Consensus 105 ~~~~~~~~~--~-~g-----------~----~----------v----------------~~~~~--------d------- 125 (385)
T PRK08574 105 TLRLLKSLE--K-FG-----------V----K----------V----------------VLAYP--------S------- 125 (385)
T ss_pred HHHHHHHhh--c-cC-----------c----E----------E----------------EEECC--------C-------
Confidence 322221100 0 00 0 0 0 00000 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~ 678 (719)
.+.+++.+. +.++.+|++|.. ..-.|.+.+ +++|.++|++||+++|+||++. |+ ..... .+
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~--~~~~l---~~ 187 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFATPL--LYRPL---RH 187 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc--cCChh---hh
Confidence 134555554 125678889986 777777776 8899999999999999999994 33 11111 12
Q ss_pred CCCccee--eehhccCC-Cccch-heeEe-CHHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTG-GVIPL-AATLA-TNAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~Lgg-G~~Pl-savl~-~~~i~~~~ 711 (719)
| .|++ .+.|.++| | -.+ |++++ ++++.+.+
T Consensus 188 G--aDivv~S~sK~l~g~~-d~~gG~vi~~~~~~~~~~ 222 (385)
T PRK08574 188 G--ADFVVHSLTKYIAGHN-DVVGGVAVAWSGEFLEEL 222 (385)
T ss_pred C--CcEEEeeCceeecCCC-CceeEEEEECcHHHHHHH
Confidence 3 4877 57999976 3 233 43444 56666544
No 217
>PRK08068 transaminase; Reviewed
Probab=97.89 E-value=0.00065 Score=75.46 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=60.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-c-ccccccCCCcc-e--eeehhccC-CC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVPD-I--ACYGKLLT-GG 694 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~-~a~e~~gv~PD-I--vtlgK~Lg-gG 694 (719)
+.++..| +.=.|.. .+.+-+++|.++|++||+++|+||+...|...+. . ......+..+. | -+|+|.+| .|
T Consensus 170 ~v~l~~P--~NPTG~~-~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 170 LMYLNYP--NNPTGAV-ATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred EEEEECC--CCCCCCc-CCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc
Confidence 4444557 4445664 4788899999999999999999999976644442 1 11122222222 2 37999997 67
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+=+|.+++++++.+.+.
T Consensus 247 -lRiG~~~~~~~l~~~l~ 263 (389)
T PRK08068 247 -WRVAFAVGNESVIEAIN 263 (389)
T ss_pred -ceeEeEecCHHHHHHHH
Confidence 68888999999988764
No 218
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=97.89 E-value=0.0001 Score=80.07 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=63.5
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee--eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv--tlgK~Lg-gG~~ 696 (719)
+.++..|- .-.|.. ++.+.+++|.++|++||+++|+||++.+|........ ..+-.++ |+ +++|.+| .| +
T Consensus 128 ~v~i~~p~--NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNPN--NPTGRL-IPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAP--QAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCCC--CCCCCC-CCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhh--HhccCCCEEEEEecchhhcCch-h
Confidence 55667773 444553 4899999999999999999999999987743222221 1121233 44 8999998 78 7
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
.+|.+++++++++.+..
T Consensus 202 R~G~i~~~~~~~~~l~~ 218 (330)
T TIGR01140 202 RLGFVVAHPALLARLRE 218 (330)
T ss_pred hhhheeCCHHHHHHHHh
Confidence 99999999999888754
No 219
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00018 Score=79.61 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=126.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|+|.+|+.+++-- |.. .-......++-++|...++...-+-+++..||+-|+|+|+.-.. .+
T Consensus 17 ~~~V~~am~~~~~~--h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-----~p-------- 79 (383)
T COG0075 17 PPRVLLAMARPMVG--HRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-----EP-------- 79 (383)
T ss_pred CHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-----CC--------
Confidence 67777776655422 211 11245566777777777764322456777999999999998772 12
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..+++.+.++.-|.-+.=+.-.... ....+..+ |
T Consensus 80 --------gdkVLv~~nG~FG~R~~~ia~~~g~---------------------------~v~~~~~~--w--------- 113 (383)
T COG0075 80 --------GDKVLVVVNGKFGERFAEIAERYGA---------------------------EVVVLEVE--W--------- 113 (383)
T ss_pred --------CCeEEEEeCChHHHHHHHHHHHhCC---------------------------ceEEEeCC--C---------
Confidence 2488888888877544332211100 00111111 0
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
+. .-+ .+.+++.|++. ..-+-++.+-.|.- .|+.-| ++++.++|++||+++
T Consensus 114 ---g~-------~v~--------p~~v~~~L~~~---~~~~~V~~vH~ETS----TGvlnp----l~~I~~~~k~~g~l~ 164 (383)
T COG0075 114 ---GE-------AVD--------PEEVEEALDKD---PDIKAVAVVHNETS----TGVLNP----LKEIAKAAKEHGALL 164 (383)
T ss_pred ---CC-------CCC--------HHHHHHHHhcC---CCccEEEEEeccCc----ccccCc----HHHHHHHHHHcCCEE
Confidence 00 000 25677777731 12234666667763 578888 999999999999999
Q ss_pred EEeccccCccccCccccccccCCCcceeeehhccCC--CccchheeEeCHHHHhhhcCCC
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG--GVIPLAATLATNAVFDSFVGDS 715 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg--G~~Plsavl~~~~i~~~~~~~~ 715 (719)
|+|=|-+ +| |..+-.+.|||.-=|.--=|+|++ | +|.+..+++.++.+.+..
T Consensus 165 iVDaVsS-~G--g~~~~vd~wgiDv~itgSQK~l~~PPG---la~v~~S~~a~e~~~~~~ 218 (383)
T COG0075 165 IVDAVSS-LG--GEPLKVDEWGIDVAITGSQKALGAPPG---LAFVAVSERALEAIEERK 218 (383)
T ss_pred EEEeccc-CC--CcccchhhcCccEEEecCchhccCCCc---cceeEECHHHHHHHhcCC
Confidence 9999986 43 556777777764333345699987 7 588999999999887654
No 220
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=97.88 E-value=0.00064 Score=76.66 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEE-EEE-ccccccCCccccCCHHHHHHHHHHHHhc-CCcEEEeccccCccccCcccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGA-LII-EPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAA-vIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~-gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
+.+++.+.. ++.+ +++ -| +.=.|... +.+.+++|.++|++| ++++|.||+..-|...+..-...
T Consensus 202 ~~l~~~~~~--------~~k~i~~~p~p--~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~-- 268 (431)
T PRK15481 202 EKLERALAQ--------GARAVILTPRA--HNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP-- 268 (431)
T ss_pred HHHHHHHhc--------CCCEEEECCCC--CCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--
Confidence 456666642 2333 444 44 44456655 789999999999999 99999999997663222110010
Q ss_pred CCCccee---eehhccCCCccchheeEeCHHHHhhhc
Q 005009 679 GCVPDIA---CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 679 gv~PDIv---tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
...+.++ +|||.++.| +-+|.+++.+++.+.+.
T Consensus 269 ~~~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~ 304 (431)
T PRK15481 269 QTTQRWALIRSVSKALGPD-LRLAFVASDSATSARLR 304 (431)
T ss_pred CCCCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHH
Confidence 1123333 799999999 79999999998887764
No 221
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=97.87 E-value=0.00039 Score=70.69 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHH
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (719)
.+.+.+.+..+.++ ..+|+|||.+..++.. .....++...+ -||+|+....-++..+..+++.
T Consensus 133 ~~~l~~~l~~l~~~-----------y~~D~IiiD~pp~~~~-----~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~~ 195 (207)
T TIGR03018 133 SQRMRSLLHELARR-----------YPDRIIIIDTPPLLVF-----SEARALARLVG-QIVLVVEEGRTTQEAVKEALSA 195 (207)
T ss_pred cHHHHHHHHHHHhh-----------CCCCEEEEECCCCcch-----hHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHHH
Confidence 34556666665543 0139999999543322 23444555554 5778888888889999999999
Q ss_pred HHhCCCcEEEEEEc
Q 005009 274 LKLRGYDVVAVVFE 287 (719)
Q Consensus 274 l~~~~~~v~gvi~N 287 (719)
++ +.+++|+|+|
T Consensus 196 l~--~~~~~G~v~N 207 (207)
T TIGR03018 196 LE--SCKVLGVVLN 207 (207)
T ss_pred hc--CCCeEEEEeC
Confidence 88 7899999998
No 222
>PRK08912 hypothetical protein; Provisional
Probab=97.87 E-value=0.00074 Score=74.90 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=59.9
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc--cccccCC-Cccee--eehhccC-CC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGC-VPDIA--CYGKLLT-GG 694 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~--a~e~~gv-~PDIv--tlgK~Lg-gG 694 (719)
+.+|.-| +.-.|.+. +.+-+++|.++|++|++++|+||++..|--.+..+ ..+..+. ..+|+ +++|.+| .|
T Consensus 162 ~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK08912 162 AVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238 (387)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC
Confidence 3455556 45556554 57889999999999999999999996542222111 0111122 12344 6899999 88
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++.+.+.
T Consensus 239 -lRiG~~~~~~~~~~~l~ 255 (387)
T PRK08912 239 -WKVGFVCAAPPLLRVLA 255 (387)
T ss_pred -ceeEEEecCHHHHHHHH
Confidence 68899999999888763
No 223
>PLN02409 serine--glyoxylate aminotransaminase
Probab=97.86 E-value=0.0001 Score=82.44 Aligned_cols=198 Identities=16% Similarity=0.039 Sum_probs=113.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+++|.+|+.+.+.. |. .....+...++.++|.++++.+..+.+++.+||++|++.++...+ +.
T Consensus 21 ~~~V~~a~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-----~~-------- 83 (401)
T PLN02409 21 PERVLRAMNRPNED--HR--SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-----SP-------- 83 (401)
T ss_pred CHHHHHHhcCCCCC--CC--CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-----CC--------
Confidence 66777776543311 11 111234556777777777664323468999999999999887551 11
Q ss_pred CCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..+||....+|.+....-+. ..|. ....++.+...
T Consensus 84 --------Gd~Vlv~~~~~~~~~~~~~~~~~g~----------------------------~v~~v~~~~~~-------- 119 (401)
T PLN02409 84 --------GDKVVSFRIGQFSLLWIDQMQRLNF----------------------------DVDVVESPWGQ-------- 119 (401)
T ss_pred --------CCEEEEeCCCchhHHHHHHHHHcCC----------------------------ceEEEECCCCC--------
Confidence 23788888777664321110 0000 00111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH--HHhcC
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRK 654 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L--c~k~g 654 (719)
.-+ .+.+++.+.+ ....++.+|++--. ....|.+.+ ++++.++ |+++|
T Consensus 120 -------------~~~--------~~~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g 169 (401)
T PLN02409 120 -------------GAD--------LDILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHP 169 (401)
T ss_pred -------------CCC--------HHHHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccC
Confidence 000 2456666652 00024555555443 445688887 8888888 99999
Q ss_pred CcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|+|++|+ +|. .-+..+. ...|++ ...|.+++. .=+|.+++++++.+.+.
T Consensus 170 ~~~vvD~v~s-~g~--~~id~~~--~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~ 223 (401)
T PLN02409 170 ALLLVDGVSS-IGA--LDFRMDE--WGVDVALTGSQKALSLP-TGLGIVCASPKALEASK 223 (401)
T ss_pred cEEEEEcccc-cCC--ccccccc--cCccEEEEcCccccCcC-CCcceeEECHHHHHHHh
Confidence 9999999996 431 1122222 245776 458999764 12788999999887654
No 224
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=97.86 E-value=0.00015 Score=81.03 Aligned_cols=169 Identities=13% Similarity=0.084 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +....++||++|+..++.... .. ...||+....|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all-----~~----------------Gd~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVL-----RP----------------GDHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchHH
Confidence 3456678999999998874 456677899999999887652 11 13678777777552
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+... .+. .+. ... +.+. .|
T Consensus 114 -~~~~~~~----~~~---------~gi-------------~~~-----------------~~d~-------~d------- 135 (388)
T PRK07811 114 -FRLIDKV----FTR---------WGV-------------EYT-----------------PVDL-------SD------- 135 (388)
T ss_pred -HHHHHHh----CcC---------CCe-------------EEE-----------------EeCC-------CC-------
Confidence 2111110 000 000 000 1110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|-. ..-.|.... +++|.++|++||+++|+||++.. +-.+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~-~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFAS-PYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCCc-cccCCc-----hh
Confidence 244565553 24678888865 555566655 99999999999999999999852 222222 22
Q ss_pred CCccee--eehhccCC-CccchheeEeC-HHHHhh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~-~~i~~~ 710 (719)
...|++ .+.|.++| |-.-.|+++++ +++.+.
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~ 230 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEA 230 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHH
Confidence 346877 46899986 21224556664 555543
No 225
>PRK12414 putative aminotransferase; Provisional
Probab=97.86 E-value=0.00066 Score=75.39 Aligned_cols=220 Identities=12% Similarity=0.059 Sum_probs=124.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCCC--CCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~~--~~rv~f~~SGsEA~E~ 476 (719)
.+||+..|.. .++ - .+.+.+++.+.+..... ........+....+++.|.+..+... -+.++.+++|++|...
T Consensus 30 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA-P-DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC-C-CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 5677776653 344 2 68889988876653211 11112234556678888777655321 1469999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ..+|+...-+|.+.. ......|.
T Consensus 106 ~~~~l~-----~~----------------gd~Vlv~~p~y~~~~-~~~~~~g~--------------------------- 136 (384)
T PRK12414 106 AISALV-----HP----------------GDEVIYFEPSFDSYA-PIVRLQGA--------------------------- 136 (384)
T ss_pred HHHHhc-----CC----------------CCEEEEeCCCccchH-HHHHHcCC---------------------------
Confidence 887551 11 136777777775522 11111110
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
..+++|... ++ + .-| .+.+++.+. .++.+|++-.- +.-.|.+
T Consensus 137 ---~~~~v~~~~------------~~----~--~~d--------~~~l~~~l~--------~~~~~v~i~~p-~NPTG~~ 178 (384)
T PRK12414 137 ---TPVAIKLSP------------ED----F--RVN--------WDEVAAAIT--------PRTRMIIVNTP-HNPSATV 178 (384)
T ss_pred ---EEEEEecCc------------cc----c--ccC--------HHHHHhhcC--------cccEEEEEcCC-CCCCCcC
Confidence 011111000 00 0 000 244555543 23445555432 4556765
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cc-cccCCCccee---eehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~-e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
. +++-+++|.++|++||+++|+||+..-|--.|... .. .+.+....++ +|+|.+| .| +=+|.+++.+++.+.
T Consensus 179 ~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~ 256 (384)
T PRK12414 179 F-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDE 256 (384)
T ss_pred C-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHHH
Confidence 5 57889999999999999999999997542123211 11 1112222233 6999997 67 688889999998876
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 257 l~ 258 (384)
T PRK12414 257 IR 258 (384)
T ss_pred HH
Confidence 53
No 226
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.00061 Score=72.26 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=66.7
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----CC---C
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GL---V 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~----~~---~ 292 (719)
.+|++||+. -|+ .+...+.+++.+---+|+|+....-....+..+++.+++-+.+|+|+|.|.. .. .
T Consensus 166 ~~D~vIID~-----PP~-~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g 239 (265)
T COG0489 166 EYDYVIIDT-----PPG-TGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEG 239 (265)
T ss_pred CCCEEEEeC-----CCC-chHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCC
Confidence 499999998 233 4566777777777678999999999999999999999999999999999954 11 2
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 293 NEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
..+...+.+ + |++| +|..+.
T Consensus 240 ~~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 240 GGEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred chhhHHHHh--c-cccccCCCChh
Confidence 344444444 5 8888 877654
No 227
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=97.85 E-value=0.00016 Score=79.99 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+. +..+.++||++|+..++.+. .. ..+||.....|++.
T Consensus 49 ~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll------~~----------------Gd~Vl~~~~~y~~t 103 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF------RS----------------GDELIVSSDLYGGT 103 (366)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh------CC----------------CCEEEEecCCcCcH
Confidence 4567788999999999874 46788999999998766432 11 13788888888873
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... . .+ .....++ ..|
T Consensus 104 ~~~~~~~~~-----~---------~G-------------~~v~~vd--------------~~d----------------- 125 (366)
T PRK08247 104 YRLFEEHWK-----K---------WN-------------VRFVYVN--------------TAS----------------- 125 (366)
T ss_pred HHHHHHHhh-----c---------cC-------------ceEEEEC--------------CCC-----------------
Confidence 211100000 0 00 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. ..-- .+..-+++|.++|++||+++|+||++. ++ .+.. .
T Consensus 126 -~~~l~~~i~--------~~tklv~le~P-~NP~----~~~~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p-----~ 184 (366)
T PRK08247 126 -LKAIEQAIT--------PNTKAIFIETP-TNPL----MQETDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP-----L 184 (366)
T ss_pred -HHHHHHhcc--------cCceEEEEECC-CCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----h
Confidence 244565554 24678888864 3322 245669999999999999999999983 22 1111 1
Q ss_pred CCCccee--eehhccCCC-ccchheeEeC-HHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~LggG-~~Plsavl~~-~~i~~~~ 711 (719)
....||+ .++|.++|. =+-.|+++++ +++.+.+
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~ 221 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERL 221 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHH
Confidence 1235776 589999851 1234456665 5665543
No 228
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.85 E-value=0.00015 Score=82.15 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||+.|+.+++.... +.| ..||.....|.|
T Consensus 66 ~~~p~~~~Le~~lA~l~g~---~~av~~sSG~aAi~~al~all-----~~G----------------d~Vv~~~~~y~~- 120 (436)
T PRK07812 66 IMNPTQDVVEQRIAALEGG---VAALLLASGQAAETFAILNLA-----GAG----------------DHIVSSPRLYGG- 120 (436)
T ss_pred CCCchHHHHHHHHHHHhCC---CeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEeCCcchH-
Confidence 3467778999999998873 578999999999999986441 111 367777665543
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
|...+... ... .+ ..... .++. .+
T Consensus 121 t~~~~~~~----l~~---------~G-------------i~v~~----------------vdd~----------~d---- 144 (436)
T PRK07812 121 TYNLFHYT----LPK---------LG-------------IEVSF----------------VEDP----------DD---- 144 (436)
T ss_pred HHHHHHHH----hhc---------Ce-------------EEEEE----------------ECCC----------CC----
Confidence 33221100 000 00 00000 0010 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.+ ....|.+.+ +++|.++|++||+++|+|+.|. .+... .-..
T Consensus 145 -~e~l~~ai~--------~~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~-----~pl~ 204 (436)
T PRK07812 145 -LDAWRAAVR--------PNTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLI-----RPLE 204 (436)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Cchh
Confidence 244555553 34678999987 788899888 9999999999999999999885 22111 1122
Q ss_pred CCccee--eehhccCC-CccchheeEe
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLA 703 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~ 703 (719)
...|++ .+.|.+|| | --++++++
T Consensus 205 ~GaDivv~S~tK~lgg~G-~~i~G~vv 230 (436)
T PRK07812 205 HGADIVVHSATKYLGGHG-TAIAGVIV 230 (436)
T ss_pred cCCCEEEEecccccCCCC-CeEEEEEE
Confidence 347876 58999975 3 22444444
No 229
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.85 E-value=6.9e-05 Score=80.45 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 416 ~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
. ||++.+|+.+.. . +.-. -...+...+|.+++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 7 ~-~~~m~~a~~~a~-~-gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~-----~~----- 68 (290)
T PF01212_consen 7 P-TPAMLEAMAAAN-V-GDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR-----PG----- 68 (290)
T ss_dssp S--HHEEHHHHHTT-S-B-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH-----TT-----
T ss_pred C-CHHHHHHHHccc-c-CCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh-----cC-----
Confidence 5 899999994433 2 2211 12467788999999999984 6788999999999999998731 11
Q ss_pred cCCCccccCcceEEEEEeC-CcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccc
Q 005009 496 LGKDTTEKCIELKVLALKG-SYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~-syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (719)
..||.-+. -+|....++. .++| ...+++|..-.
T Consensus 69 -----------~~vi~~~~aHi~~~E~ga~~~~~G------------------------------~~~~~l~~~~~---- 103 (290)
T PF01212_consen 69 -----------ESVICADTAHIHFDETGAIEELSG------------------------------AKLIPLPSDDD---- 103 (290)
T ss_dssp -----------EEEEEETTEHHHHSSTTHHHHHTT------------------------------CEEEEEBECTG----
T ss_pred -----------CceeccccceeeeeccchhhHhcC------------------------------cEEEECCCccc----
Confidence 13333322 2233333333 2222 11222221100
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc
Q 005009 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (719)
Q Consensus 574 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~ 653 (719)
..+ + .+.|++.+.... .+..++++|.+|-- ....|-.+++.+.+++|+++|++|
T Consensus 104 -------G~l--------~--------~~~l~~~~~~~~--~h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~ 157 (290)
T PF01212_consen 104 -------GKL--------T--------PEDLEAAIEEHG--AHHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREH 157 (290)
T ss_dssp -------TBB-----------------HHHHHHHHHHHT--GTSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHH
T ss_pred -------CCC--------C--------HHHHHHHhhhcc--ccCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhC
Confidence 000 0 356677776421 13468999999964 454444456889999999999999
Q ss_pred CCcEEEeccccC--ccccCccccccccCCCcceee--ehhccCCCccch-heeEeCHHHH
Q 005009 654 KIPVIFDEVFTG--FWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPL-AATLATNAVF 708 (719)
Q Consensus 654 gilLI~DEVqTG--fGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Pl-savl~~~~i~ 708 (719)
|+.|.+|=.--. ..-.|. ....+----|+++ +.|.++. |+ ++++++++++
T Consensus 158 gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g~---~~Gavl~~~~~~i 212 (290)
T PF01212_consen 158 GLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGGA---PGGAVLAGNKEFI 212 (290)
T ss_dssp T-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT-S---SSEEEEEESHHHH
T ss_pred ceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEccccc---ccceEEEechHHH
Confidence 999999954310 000011 0111112458774 5665543 33 4567777744
No 230
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=97.83 E-value=0.00049 Score=77.35 Aligned_cols=214 Identities=10% Similarity=0.019 Sum_probs=120.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-----ChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-----~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||..+ .|-- .+.|.+|+.+.+..+.... ..... .+...++-+.|+++++...-+.|+|++++++|
T Consensus 34 iyLd~a~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 34 VYLDNAA------TSQK-PAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 6888533 4556 7889999988776542211 00011 12234666778887764212589999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++.. ....-+. ..+|+.....|++.......+... .+ .
T Consensus 107 l~~i~~~~-~~~~~~~----------------gd~vl~~~~~~~s~~~~~~~~a~~---~g-----------~------- 148 (424)
T PLN02855 107 INLVAYTW-GLANLKP----------------GDEVILSVAEHHSNIVPWQLVAQK---TG-----------A------- 148 (424)
T ss_pred HHHHHHHh-hhhcCCC----------------cCEEEECCCccHHHHHHHHHHHHH---cC-----------C-------
Confidence 98888743 1100111 236777766665432111111100 00 0
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.... .. -+ .+.+++.+. .++..|++.-+ +...
T Consensus 149 ----~v~~v~~~~~-------------~~--------~~--------~~~l~~~i~--------~~t~lv~i~~~-~n~t 186 (424)
T PLN02855 149 ----VLKFVGLTPD-------------EV--------LD--------VEQLKELLS--------EKTKLVATHHV-SNVL 186 (424)
T ss_pred ----EEEEEecCCC-------------CC--------cC--------HHHHHHHhc--------cCceEEEEeCc-cccc
Confidence 0001111000 00 00 245666654 14456666665 7778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.+.+ +++|.++|+++|+++|+|++|. +|..- +-.+ ...+|++ .+.| +.|. .-+|.+.+++++.+.+
T Consensus 187 G~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~~ 255 (424)
T PLN02855 187 GSILP----VEDIVHWAHAVGAKVLVDACQS-VPHMP--VDVQ--TLGADFLVASSHK-MCGP-TGIGFLWGKSDLLESM 255 (424)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--CCch--hcCCCEEEeeccc-ccCC-CccEEEEEchhhhhcC
Confidence 88887 7899999999999999999994 44321 1122 2347987 5689 4331 1268888999887665
No 231
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.82 E-value=0.00013 Score=81.74 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=55.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++.- +-.... .....|+++ +.|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~~-----~~~gaDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQKP-----LELGAHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCCc-----hhhCCCEEEeeccccccCCc-
Confidence 4678888875 666777776 99999999999999999999962 111111 122368874 6899976 5
Q ss_pred cchh-eeEeCHHHH
Q 005009 696 IPLA-ATLATNAVF 708 (719)
Q Consensus 696 ~Pls-avl~~~~i~ 708 (719)
..+| +++++++..
T Consensus 218 ~~~GG~vv~~~~~i 231 (398)
T PRK07504 218 RCLGGVVLSDKAWI 231 (398)
T ss_pred cceEEEEEeCcHHH
Confidence 4565 566666654
No 232
>PRK07049 methionine gamma-lyase; Validated
Probab=97.82 E-value=0.00024 Score=80.39 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++....|.++|+++.+. +.++.++||++|+..++.... .. ...||+.+..|.|.
T Consensus 80 ~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~-----~~----------------Gd~Vv~~~p~Y~~~ 135 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFV-----RP----------------GDVILHSQPLYGGT 135 (427)
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCcccH
Confidence 4466678999999998863 578999999999888886552 11 13677777777773
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... .. |...+.+++. .|
T Consensus 136 ~~~~~~~l~--------------~~-------------Gi~~v~~~~~-------------~d----------------- 158 (427)
T PRK07049 136 ETLLAKTFR--------------NF-------------GVGAVGFADG-------------LS----------------- 158 (427)
T ss_pred HHHHHHHHH--------------hc-------------CcEEEEEeCC-------------CC-----------------
Confidence 221110000 00 0001111100 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh------cCCcEEEeccccCccccCccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k------~gilLI~DEVqTGfGRtG~~~ 673 (719)
.+.+++.+.+. ....++.+|++|.. ..-.|.+.. ++++.++|++ +|+++|+||+..++-...
T Consensus 159 -~~~l~~~l~~~---~~~~~tklv~lesP-~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~--- 226 (427)
T PRK07049 159 -EAAIGAAAEAA---AAKGRVSLILIETP-ANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK--- 226 (427)
T ss_pred -HHHHHHHHHhh---ccCCCceEEEEECC-CCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccCC---
Confidence 12344444321 11236778999975 777787765 5555555555 899999999965431111
Q ss_pred cccccCCCccee--eehhccCC--CccchheeEeCHHHHhhhc
Q 005009 674 TADLLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 674 a~e~~gv~PDIv--tlgK~Lgg--G~~Plsavl~~~~i~~~~~ 712 (719)
-.....||+ +++|.++| | +=+|++++++++++.+.
T Consensus 227 ---pl~~g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 227 ---PLEHGADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVR 265 (427)
T ss_pred ---ccccCCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHH
Confidence 111235877 79999994 6 56778888888877653
No 233
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00031 Score=75.98 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
||++.+|+.+.-....-. -...+...+++++++++++. ..++|+.||+.||..||...
T Consensus 13 ~~~m~eam~~a~~~~~~~---YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~ 70 (342)
T COG2008 13 TPEMREALAAANAVGDDV---YGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAH 70 (342)
T ss_pred CHHHHHHHHhccccCCCC---CCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHh
Confidence 899999998765321111 12355677899999999884 78999999999999999876
No 234
>PRK07683 aminotransferase A; Validated
Probab=97.80 E-value=0.00097 Score=74.13 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=58.9
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CCCcc-ee--eehhccC-CCccc
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPD-IA--CYGKLLT-GGVIP 697 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv~PD-Iv--tlgK~Lg-gG~~P 697 (719)
+|.-| +.-.|... +.+-+++|.++|+++|+++|+||++..+-..+.......+ +.... |+ +++|.+| .| +=
T Consensus 166 ~i~~p--~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lR 241 (387)
T PRK07683 166 VLPYP--SNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WR 241 (387)
T ss_pred EEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ce
Confidence 44445 45556644 7888999999999999999999999866222221111111 22122 32 6899998 78 78
Q ss_pred hheeEeCHHHHhhhc
Q 005009 698 LAATLATNAVFDSFV 712 (719)
Q Consensus 698 lsavl~~~~i~~~~~ 712 (719)
+|.+++++++++.+.
T Consensus 242 iG~i~~~~~l~~~~~ 256 (387)
T PRK07683 242 IGFLFAPSYLAKHIL 256 (387)
T ss_pred eEEEEcCHHHHHHHH
Confidence 899999999888764
No 235
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.79 E-value=0.00029 Score=73.74 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHH
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (719)
.-+++..+++...+ ..|++||.++-|+..|.......+|+ +|+|.-..--+++....+++.
T Consensus 149 s~~lV~~~kk~a~E------------~~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEPTp~glhD~kr~~el 209 (284)
T COG1149 149 SGKLVTALKKHAKE------------LADLLIIDSAAGTGCPVIASLKGADL-------AILVTEPTPFGLHDLKRALEL 209 (284)
T ss_pred cchHHHHHHHhhhh------------hcceeEEecCCCCCChHHHhhccCCE-------EEEEecCCccchhHHHHHHHH
Confidence 44666777776654 16999999999999996544444443 578888888899999999999
Q ss_pred HHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCcEEe-cCCCCCC
Q 005009 274 LKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQD 316 (719)
Q Consensus 274 l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~-~~pvlg-lP~~~~~ 316 (719)
.+.-|++ .++|+||....+. .++++.++ ++|+++ ||+..+.
T Consensus 210 ~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 210 VEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred HHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhH
Confidence 9988888 7899999944444 77887766 899999 9998763
No 236
>PRK11670 antiporter inner membrane protein; Provisional
Probab=97.79 E-value=0.0016 Score=72.33 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=61.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC--C----
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--V---- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~--~---- 292 (719)
.+|++||-..-|+ +.....++....+- +|+|.....-++..+..+++.+...++++.|+|+|.... .
T Consensus 215 ~yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~ 288 (369)
T PRK11670 215 DLDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGH 288 (369)
T ss_pred cCCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccc
Confidence 4999999995432 22233444433333 677777777678888888888888899999999998621 1
Q ss_pred --------CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 293 --------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
..+.+.+.+ ++|+++ ||.....
T Consensus 289 ~~~if~~~~~~~lae~~--~~~ll~~IP~~~~I 319 (369)
T PRK11670 289 HEPIFGTGGAEKLAEKY--HTQLLGQMPLHISL 319 (369)
T ss_pred hhhhcccchHHHHHHHc--CCcEEEEeCCChHH
Confidence 134444555 899999 9887653
No 237
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.00029 Score=72.40 Aligned_cols=114 Identities=21% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHH
Q 005009 189 GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268 (719)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~ 268 (719)
|-.+....+.+.+-+.+.. ..+|+|||.+--|+--=...-.-.+| =+|.|++...-++--+-
T Consensus 113 GC~Cp~~allR~~l~~l~~-----------~~~e~VivDtEAGiEHfgRg~~~~vD-------~vivVvDpS~~sl~tae 174 (255)
T COG3640 113 GCACPMNALLRRLLRHLIL-----------NRYEVVIVDTEAGIEHFGRGTIEGVD-------LVIVVVDPSYKSLRTAE 174 (255)
T ss_pred cccchHHHHHHHHHHHHhc-----------ccCcEEEEecccchhhhccccccCCC-------EEEEEeCCcHHHHHHHH
Confidence 3344455555555554432 24899999986655211111111122 25677776655555555
Q ss_pred HHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCcEEe-cCCCCCCCcchh
Q 005009 269 SAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDL 321 (719)
Q Consensus 269 ~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~-~~pvlg-lP~~~~~~~~~~ 321 (719)
-.-+...+-|+.=+++|+|++... ...++..... +.+|+| ||+.+....-++
T Consensus 175 ri~~L~~elg~k~i~~V~NKv~e~-e~~~~~~~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 175 RIKELAEELGIKRIFVVLNKVDEE-EELLRELAEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred HHHHHHHHhCCceEEEEEeeccch-hHHHHhhhhccCCeEEEEccCCHHHHhccc
Confidence 555555667888899999999655 4444444444 999999 999988765544
No 238
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.78 E-value=0.0002 Score=81.03 Aligned_cols=161 Identities=13% Similarity=0.112 Sum_probs=100.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+++.+. +.+++++||+.|+..|+.... +.| .+||+.+..|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg~---~~al~~~sG~~Ai~~al~~ll-----~~G----------------D~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGG---IGALAVSSGQAAITYSILNIA-----SAG----------------DEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEccCchhhH
Confidence 3466788999999998873 678999999999999987542 111 3677777766553
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+...- . .. |.....+| ..|
T Consensus 117 -~~~~~~~~-~------------~~-------------Gv~v~~vd--------------~~d----------------- 138 (431)
T PRK08248 117 -YNLFAHTL-P------------KL-------------GITVKFVD--------------PSD----------------- 138 (431)
T ss_pred -HHHHHHHH-H------------hC-------------CEEEEEEC--------------CCC-----------------
Confidence 22211000 0 00 00001111 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+|+++. ++.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a----~~~~--~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA----SPYL--LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC----cccc--CChhH
Confidence 244555553 24678888865 566687776 7899999999999999999984 2211 11112
Q ss_pred CCcceee--ehhccCC-CccchheeEe
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLA 703 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~ 703 (719)
...|+++ +.|.+|| | ..+|++++
T Consensus 199 ~gaDivv~S~tK~lgg~g-~~~Gg~v~ 224 (431)
T PRK08248 199 HGADIVVHSATKFIGGHG-TSIGGVIV 224 (431)
T ss_pred cCCCEEEEcCccccCCCC-CceEEEEE
Confidence 3478875 6799987 5 45666555
No 239
>PRK05957 aspartate aminotransferase; Provisional
Probab=97.78 E-value=0.00083 Score=74.72 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=60.5
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccc-ccccCCCcc---eeeehhccC-C
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETT-ADLLGCVPD---IACYGKLLT-G 693 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a-~e~~gv~PD---IvtlgK~Lg-g 693 (719)
+.+|++-.. +.-.|.+. |.+-+++|.++|++||+++|.||+...|--.+. ... ....+..+- +-+++|.+| .
T Consensus 161 ~klv~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 238 (389)
T PRK05957 161 TRAIVTISP-NNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA 238 (389)
T ss_pred ceEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc
Confidence 334444332 56667655 577899999999999999999999976632221 111 111122222 347999997 6
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +-+|.+++++++++.+.
T Consensus 239 G-lRiG~~~~~~~~~~~~~ 256 (389)
T PRK05957 239 S-WRIGYMVIPIHLLEAIK 256 (389)
T ss_pred c-ceeEEEecCHHHHHHHH
Confidence 8 68999999999988774
No 240
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=97.78 E-value=0.0004 Score=76.52 Aligned_cols=209 Identities=14% Similarity=0.055 Sum_probs=130.2
Q ss_pred cCCCCCCCHHHHHHHHHhhhhccccc--CCCC----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHH
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVM--FPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~--~~~~----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~ 484 (719)
...|.. .+.|.+++.+.+....... .... ..+...+..+.|+++++...-+.++|+.++++|++.++......
T Consensus 6 ~~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~ 84 (371)
T PF00266_consen 6 AGTGPM-PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP 84 (371)
T ss_dssp SSS-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCccCC-CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc
Confidence 346777 8999999998877543211 0111 13345577777888877542257999999999999999887311
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (719)
. ....+|+.....|++...-...+... .+. .+..++.
T Consensus 85 ~------------------~~g~~vl~~~~~~~s~~~~~~~~~~~--------------~g~-----------~v~~i~~ 121 (371)
T PF00266_consen 85 L------------------KPGDEVLVTSNEHPSNRYPWEEIAKR--------------KGA-----------EVRVIPA 121 (371)
T ss_dssp G------------------TTTCEEEEEESSHHHHHHHHHHHHHH--------------TTE-----------EEEEEEE
T ss_pred c------------------cccccccccccccccccccccccccc--------------chh-----------hhccccc
Confidence 1 22348999999988854221111100 000 0001111
Q ss_pred cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHH
Q 005009 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (719)
Q Consensus 565 P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~ 644 (719)
+ . ... -+ .+.+++.|. .++..|++--+ ....|...| ++
T Consensus 122 ~--~-----------~~~--------~~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~ 159 (371)
T PF00266_consen 122 D--P-----------GGS--------LD--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IE 159 (371)
T ss_dssp G--T-----------TSS--------CS--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HH
T ss_pred c--c-----------cch--------hh--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ec
Confidence 1 0 000 01 355667774 35667777776 777899998 99
Q ss_pred HHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 645 ILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 645 ~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|.++|+++|+++|+|=+|. +|.. -.-.+. ..+|++++ -| |+|+ .-+|.+.++++..+.+.
T Consensus 160 ~I~~~~~~~~~~~~vD~~~~-~g~~--~id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~ 222 (371)
T PF00266_consen 160 EIAKLAHEYGALLVVDAAQS-AGCV--PIDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLR 222 (371)
T ss_dssp HHHHHHHHTTSEEEEE-TTT-TTTS--S--TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHH
T ss_pred eehhhhhccCCceeEechhc-cccc--cccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhccc
Confidence 99999999999999999996 5433 233333 35798864 59 8885 34799999999888874
No 241
>PRK08636 aspartate aminotransferase; Provisional
Probab=97.77 E-value=0.0015 Score=72.97 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g 679 (719)
+.+++.+.+ ...++.++++- | +.=.|.+. +.+=+++|.++|++|++++|.||+...|--.+.. .....+.
T Consensus 163 ~~l~~~~~~-----~~~~~~~i~~~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~ 234 (403)
T PRK08636 163 ENLEKALRE-----SSPKPKYVVVNFP--HNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVE 234 (403)
T ss_pred hHHHHHHhh-----ccCCceEEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCC
Confidence 445666653 22344455554 6 34445544 6788899999999999999999999765222221 1111111
Q ss_pred CCccee----eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 680 CVPDIA----CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIv----tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
-.+|.+ +|+|.+| .| +-+|.+++++++.+.+.
T Consensus 235 ~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~ 271 (403)
T PRK08636 235 GAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALK 271 (403)
T ss_pred CccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHH
Confidence 123432 5899996 68 79999999999887664
No 242
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=97.76 E-value=0.00033 Score=77.27 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
.+..+++.+.++.-..+ ...+...+|++++++.++ ...++.++||+.|...|++.. +.
T Consensus 5 ~e~~~~v~~~l~s~~~~----~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-----~~---------- 62 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS----TYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-----GL---------- 62 (363)
T ss_dssp HHHHHHHHHHHHHTCCS----SSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-----TG----------
T ss_pred HHHHHHHHHHHHhCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-----CC----------
Confidence 35566677766654222 225788999999999998 478999999999999999986 11
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (719)
....+||.-.-+|.+.....+.+...+ .|.|. . |+.+
T Consensus 63 -----~~gdeVi~p~~t~~~~~~ai~~~G~~p---------------v~~Di------------~-~~~~---------- 99 (363)
T PF01041_consen 63 -----GPGDEVIVPAYTFPATASAILWAGAEP---------------VFVDI------------D-PETL---------- 99 (363)
T ss_dssp -----GTTSEEEEESSS-THHHHHHHHTT-EE---------------EEE-B------------E-TTTS----------
T ss_pred -----CcCceEecCCCcchHHHHHHHHhccEE---------------EEEec------------c-CCcC----------
Confidence 112478877777776433322222110 01110 0 0110
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEE
Q 005009 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (719)
Q Consensus 579 ~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI 658 (719)
+ -| .+.+++.+.+ +..|||+=-+ .| .... +.+++++|++||+.||
T Consensus 100 --~---------id--------~~~~~~~i~~--------~t~ai~~~h~-~G---~~~d----~~~i~~~~~~~~i~lI 144 (363)
T PF01041_consen 100 --N---------ID--------PEALEKAITP--------KTKAILVVHL-FG---NPAD----MDAIRAIARKHGIPLI 144 (363)
T ss_dssp --S---------B---------HHHHHHHHHT--------TEEEEEEE-G-GG---B-------HHHHHHHHHHTT-EEE
T ss_pred --C---------cC--------HHHHHHHhcc--------CccEEEEecC-CC---Cccc----HHHHHHHHHHcCCcEE
Confidence 0 01 3567788863 4466666554 34 3333 9999999999999999
Q ss_pred EeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEeCH-HHHhh
Q 005009 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFDS 710 (719)
Q Consensus 659 ~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~~-~i~~~ 710 (719)
-|=.|+ + |..+.-...|-.-|+.||| |.|+.|= -|++++++ ++++.
T Consensus 145 eD~a~a-~---g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~ 195 (363)
T PF01041_consen 145 EDAAQA-F---GARYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAER 195 (363)
T ss_dssp EE-TTT-T---T-EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHH
T ss_pred Eccccc-c---CceeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHH
Confidence 999996 4 3333333344455888876 8886431 25577764 44443
No 243
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=97.75 E-value=0.00052 Score=73.91 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=56.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCC---hHHHHHHHHHHHHhCC--CcEEEEEEccCC-CCC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG---GISGTISAYESLKLRG--YDVVAVVFEDHG-LVN 293 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g---~i~~~~~~~~~l~~~~--~~v~gvi~N~~~-~~~ 293 (719)
.+|++||-..|++.++... ..++..+ ---||+|.....- +.+.+..+++.++..+ +++.|+|+|+.. ...
T Consensus 122 ~yD~IliD~~~~~~~~g~~-~~~a~~~---Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~ 197 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFA-TPLARSL---AEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGE 197 (296)
T ss_pred cCCEEEEecCCCccccccc-cchhhhh---CCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccH
Confidence 4999999986654332111 1111111 1135666665533 3466677777777654 779999999983 333
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 294 ~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+.+.+.+ ++|+++ ||+.+...
T Consensus 198 ~~~~~~~~--~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 198 AQAFAREV--GIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHHHc--CCCeEEECCCCHHHH
Confidence 33334444 999999 99987644
No 244
>PRK05968 hypothetical protein; Provisional
Probab=97.75 E-value=0.00019 Score=80.11 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=52.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cccc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIP 697 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~~P 697 (719)
..|++|-. .+..+ +..-+++|.++|++||+++|+|+.+..+ -..... .+| .|++ ++.|.++| | -+
T Consensus 149 klV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p~---~~g--~Divv~S~tK~l~g~~-~~ 216 (389)
T PRK05968 149 KLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRPI---TLG--VDLVIHSASKYLGGHS-DT 216 (389)
T ss_pred CEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCch---hcC--CcEEEeeccccccCCC-Ce
Confidence 46778865 45433 3456999999999999999999998532 112211 123 4777 57899986 3 23
Q ss_pred -hheeEeCHHHHhhhc
Q 005009 698 -LAATLATNAVFDSFV 712 (719)
Q Consensus 698 -lsavl~~~~i~~~~~ 712 (719)
.|++++++++++.+.
T Consensus 217 ~gG~i~~~~~~~~~l~ 232 (389)
T PRK05968 217 VAGVVAGSKEHIARIN 232 (389)
T ss_pred EEEEEEECHHHHHHHH
Confidence 355667888776543
No 245
>PRK06460 hypothetical protein; Provisional
Probab=97.75 E-value=0.00029 Score=78.27 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=58.2
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC--C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg--G 694 (719)
++.+|++|.. ..-.|.+.+ +++|.++|++||+++|+||++..+ -... ......||+ +++|.++| +
T Consensus 130 ~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~-----~l~~~~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK-----PLELGADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----hhhcCCCEEEeecceeccCCCC
Confidence 5668888986 777888777 678999999999999999998532 1111 111235776 68999974 1
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
.=+|.+++++++++.+.
T Consensus 199 -~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 199 -VIAGLAAGYGKLLNVID 215 (376)
T ss_pred -ceEEEEecCHHHHHHHH
Confidence 12456788888877664
No 246
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=97.75 E-value=0.00024 Score=79.14 Aligned_cols=170 Identities=16% Similarity=0.115 Sum_probs=103.1
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... .. ...||+....|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all-----~~----------------GD~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALL-----GP----------------DDLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCCcHH
Confidence 34567788999999998763 579999999999998887652 11 2367877777765
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.......+... . + ..+. +.+. .|
T Consensus 103 ~~~~~~~~~~~----~----------~--------------~~v~----------------~~d~-------~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKK----G----------C--------------FRVL----------------FVDQ-------GD------ 125 (382)
T ss_pred HHHHHHHHHhh----c----------C--------------eEEE----------------EECC-------CC------
Confidence 22111111100 0 0 0000 0000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++.-+ -.-. -+
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~-----pl 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN-----PL 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 244555554 24578888865 566677766 789999999999999999999521 1111 11
Q ss_pred CCCccee--eehhccCC--CccchheeEe-CHHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~Lgg--G~~Plsavl~-~~~i~~~~ 711 (719)
....|++ ++.|-++| | +-.|++++ ++++.+.+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l 221 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSD-VIAGAVIAKDPQVAEEL 221 (382)
T ss_pred hhCCCEEEeecceeccCCCC-ceeEEEEeCCHHHHHHH
Confidence 2235877 68998875 3 23455555 56665543
No 247
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=97.74 E-value=0.0017 Score=71.14 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=56.2
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee--eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv--tlgK~Lg-gG~~P 697 (719)
.+|..| +.-.|.. .+.+-+++|.++|++||+++|+||++.-+ ..+. ......++....|+ +++|.+| .| +=
T Consensus 140 i~i~~p--~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lR 214 (350)
T TIGR03537 140 VWINYP--HNPTGAT-APRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YR 214 (350)
T ss_pred EEEeCC--CCCcCcc-cCHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCcCCEEEEeecccccCCcc-cc
Confidence 334445 5556754 47888999999999999999999998643 2222 11111122111233 5799986 46 57
Q ss_pred hheeEeCHHHHhhhc
Q 005009 698 LAATLATNAVFDSFV 712 (719)
Q Consensus 698 lsavl~~~~i~~~~~ 712 (719)
+|.+++++++.+.+.
T Consensus 215 iG~~~~~~~~~~~~~ 229 (350)
T TIGR03537 215 SGFVAGDEKLISFLR 229 (350)
T ss_pred ceeeecCHHHHHHHH
Confidence 777888888887664
No 248
>PRK05939 hypothetical protein; Provisional
Probab=97.74 E-value=0.0002 Score=80.19 Aligned_cols=160 Identities=10% Similarity=0.067 Sum_probs=99.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.++.++||..|+..++...+ +.| ..||+.+..|.+
T Consensus 44 ~g~p~~~~lE~~la~leg~---~~~v~~ssG~~Ai~~~l~all-----~~G----------------d~Vv~~~~~y~~- 98 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGG---VGTVCFATGMAAIAAVFLTLL-----RAG----------------DHLVSSQFLFGN- 98 (397)
T ss_pred CCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHc-----CCC----------------CEEEECCCcccc-
Confidence 4578888999999998874 467788899999988887552 111 367776655544
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+... ..+ + .....+| ..|
T Consensus 99 t~~~~~~l--~~~-G------------------------~~v~~v~--------------~~d----------------- 120 (397)
T PRK05939 99 TNSLFGTL--RGL-G------------------------VEVTMVD--------------ATD----------------- 120 (397)
T ss_pred HHHHHHHH--Hhc-C------------------------CEEEEEC--------------CCC-----------------
Confidence 32211110 000 0 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.+ ....|.+.+ +++|.++|++||+++|+|++|+. +.. ++-..
T Consensus 121 -~e~l~~~l~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~----~~~--~~~~~ 180 (397)
T PRK05939 121 -VQNVAAAIR--------PNTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS----PWL--FRPKD 180 (397)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc----ccc--cCccc
Confidence 245666553 24678899986 777787765 99999999999999999999842 111 12222
Q ss_pred CCccee--eehhccCC-CccchheeEe
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLA 703 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~ 703 (719)
...|++ .+.|.++| | --++++++
T Consensus 181 ~gaDivv~S~sK~~~g~g-~~igg~v~ 206 (397)
T PRK05939 181 VGASLVINSLSKYIAGHG-NALGGAVT 206 (397)
T ss_pred cCCEEEEecCeecccCCC-CeEEEEEe
Confidence 346777 57899986 5 34555555
No 249
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=97.73 E-value=0.00038 Score=77.14 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=99.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+ .+.++.++||.+|+..++.+. +.| ..||.....|+|.
T Consensus 51 ~~~p~~~~le~~lA~leg---~~~~v~~~sG~aAi~~~l~~l------~~G----------------D~VI~~~~~yg~~ 105 (364)
T PRK07269 51 TKNPTRAKLEETLAAIES---ADYALATSSGMSAIVLAFSVF------PVG----------------SKVVAVRDLYGGS 105 (364)
T ss_pred CCCccHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHh------CCC----------------CEEEEecCCcCch
Confidence 456677899999999886 368999999999999998532 122 3677777666542
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
. .-+.... + .+.+.+ .+.. |
T Consensus 106 ~-~~~~~~~----------------------~-----~~~~~~----------------~~~~---------d------- 125 (364)
T PRK07269 106 F-RWFNQQE----------------------K-----EGRFHF----------------TYAN---------T------- 125 (364)
T ss_pred H-HHHHHHH----------------------h-----cCcEEE----------------EecC---------C-------
Confidence 1 1000000 0 000000 0110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|-. ..-.|.... +++|.++|+++|+++|+||++.. +. .+.-.+
T Consensus 126 -~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~--~~~pl~ 185 (364)
T PRK07269 126 -EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PI--YQRPIE 185 (364)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----cc--cCCchh
Confidence 244566654 24457888864 344565555 99999999999999999999631 11 123345
Q ss_pred CCcceee--ehhccCC-CccchheeEe-CHHHHhhh
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~-~~~i~~~~ 711 (719)
.-.||++ +.|-++| |=.=.|++++ ++++++.+
T Consensus 186 ~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~ 221 (364)
T PRK07269 186 LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKL 221 (364)
T ss_pred hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHH
Confidence 5689886 4688875 2111234555 45665544
No 250
>PRK07671 cystathionine beta-lyase; Provisional
Probab=97.73 E-value=0.00036 Score=77.67 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=52.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCC-c
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG-V 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG-~ 695 (719)
++.+|++|-. ..-.|.... +++|.++|+++|+++|+||++.. +-.+.. .....|++ .+.|.++|- -
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 4678888864 455566655 99999999999999999999852 112222 22345887 578999851 0
Q ss_pred cchheeEe-CHHHHhhh
Q 005009 696 IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~ 711 (719)
.=.|++++ ++++++.+
T Consensus 203 ~~~G~~v~~~~~l~~~~ 219 (377)
T PRK07671 203 VVAGLVVVNSPELAEDL 219 (377)
T ss_pred ceeEEEEeCcHHHHHHH
Confidence 01222444 55665543
No 251
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.73 E-value=0.0017 Score=64.02 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=60.2
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC--CCHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--VNEVPL 297 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~--~~~~~l 297 (719)
.+|++||.+.+|+.. .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++.. .....+
T Consensus 92 ~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~~ 163 (179)
T cd03110 92 GAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEEI 163 (179)
T ss_pred CCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHHH
Confidence 599999999887532 2233333322 367777877888999888999988888775 899999832 234456
Q ss_pred HHhhcC-CCcEEe-cC
Q 005009 298 MSYLRN-RVPVLV-LP 311 (719)
Q Consensus 298 ~~~~~~-~~pvlg-lP 311 (719)
++++++ ++|++| ||
T Consensus 164 ~~~~~~~~~~vl~~ip 179 (179)
T cd03110 164 EDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHcCCCeEEeCC
Confidence 666665 999999 87
No 252
>PRK08175 aminotransferase; Validated
Probab=97.72 E-value=0.0019 Score=72.03 Aligned_cols=103 Identities=9% Similarity=0.082 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv 680 (719)
+.+++.+.. ...++.++++... +.-.|... +.+-+++|.++|++||+++|+||+...+--.|... ....+.-
T Consensus 152 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~ 224 (395)
T PRK08175 152 NELERAIRE-----SYPKPKMMILGFP-SNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG 224 (395)
T ss_pred HHHHHHHhh-----ccCCceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence 456666652 1234566666532 45556554 78888999999999999999999997652122211 1100111
Q ss_pred Ccce----eeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 681 VPDI----ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDI----vtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+|. -+++|.+| .| +=+|.+++++++++.+.
T Consensus 225 ~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~ 260 (395)
T PRK08175 225 AKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALA 260 (395)
T ss_pred cccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHH
Confidence 1342 37899996 56 57788999999988764
No 253
>PRK08354 putative aminotransferase; Provisional
Probab=97.72 E-value=0.00091 Score=72.08 Aligned_cols=185 Identities=16% Similarity=0.081 Sum_probs=113.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+||+..+. +.+ . +|.+.+|+.+.++.... +. ....|.+.+++..+ +.++.+++++||...++.
T Consensus 9 ~~i~l~~~~--np~--~-p~~~~~a~~~~~~~~~~-----yp--~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSASV--NPY--P-PEWLDEMFERAKEISGR-----YT--YYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCCC--CCC--C-CHHHHHHHHHHHHHhhc-----CC--ChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 688988743 333 5 68999999876654321 11 23567788888776 368999999999887664
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
+. . +| .+|+..+-+|.+....+ ...|.
T Consensus 73 ~~-----~-~g----------------d~vlv~~P~y~~~~~~~-~~~g~------------------------------ 99 (311)
T PRK08354 73 LA-----L-RD----------------RKVIIPRHTYGEYERVA-RFFAA------------------------------ 99 (311)
T ss_pred hh-----C-CC----------------CeEEEeCCCcHHHHHHH-HHcCC------------------------------
Confidence 33 1 12 35777766666532221 11110
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+..| .| .+.+++.+. . .-..++.-| +.-.|... +
T Consensus 100 ~~~~~~---------------~d------------------~~~l~~~~~-------~-~~~vi~~~P--~NPTG~~~-~ 135 (311)
T PRK08354 100 RIIKGP---------------ND------------------PEKLEELVE-------R-NSVVFFCNP--NNPDGKFY-N 135 (311)
T ss_pred EEeecC---------------CC------------------HHHHHHhhc-------C-CCEEEEecC--CCCCCCcc-C
Confidence 000111 00 133444443 1 224677788 45557644 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT 704 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~ 704 (719)
.+-+++|.++|++||+++|.||+...|..-+.. .. .+.++ +|+|.++ .| +-+|.+++-
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~-~~~vi~~~S~SK~~~l~G-lRiG~~v~~ 197 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE-GENIIKLRTFTKSYGLPG-IRVGYVKGF 197 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC-CCcEEEEeccHhhcCCcc-ceeeeeeeh
Confidence 888999999999999999999999887332211 11 22222 6999998 78 688888873
No 254
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=97.71 E-value=0.0013 Score=72.86 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=51.5
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~P 697 (719)
...|++.-. +...|.+.+ +++|.++|++||+++|+|++|. +|.. -+ +.....+|+++++ |-+| .|
T Consensus 141 t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~--~~~~~~~D~~~~s~~K~~g---p~ 207 (382)
T TIGR03403 141 TALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PV--DVQKAGVDFLSFSAHKFHG---PK 207 (382)
T ss_pred CeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--cc--CccccCCCEEEEcchhhCC---CC
Confidence 456777765 778898887 7899999999999999999986 3321 11 1122357999888 9533 12
Q ss_pred -hheeEeCHH
Q 005009 698 -LAATLATNA 706 (719)
Q Consensus 698 -lsavl~~~~ 706 (719)
+|++.+++.
T Consensus 208 G~g~l~vr~~ 217 (382)
T TIGR03403 208 GVGGLYIRKG 217 (382)
T ss_pred ceEEEEECCC
Confidence 566666654
No 255
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00041 Score=76.47 Aligned_cols=209 Identities=13% Similarity=0.082 Sum_probs=119.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-------hHHHHHHHHHHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-------~~~~~Lae~L~~~~~~~~~~rv~f~~SGsE 472 (719)
-|+|..+. .. - +|++.+++...+... +.+. +..| ....+.-+.++++++.. -+.++|+++|+|
T Consensus 3 iYlD~~AT---Tp---~-~~~v~~~m~~~~~~~-fgNP-sS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAAT---TP---V-DPEVLEAMLPYLTEV-FGNP-SSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATE 72 (386)
T ss_pred cccccccc---CC---C-CHHHHHHHHHHHHhh-cCCc-cchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcH
Confidence 57786652 22 2 899999999988875 3221 1222 22334444555666654 368999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
+|-.|||-++..+..+ ..++.||+-.--.|. ...++.--.. .++.
T Consensus 73 snNlaI~g~~~a~~~~---------------~~~~HIIts~iEH~a-Vl~~~~~Le~------------~g~~------- 117 (386)
T COG1104 73 SNNLAIKGAALAYRNA---------------QKGKHIITSAIEHPA-VLNTCRYLER------------QGFE------- 117 (386)
T ss_pred HHHHHHHhhHHhhhcc---------------cCCCeEEEcccccHH-HHHHHHHHHh------------cCCe-------
Confidence 9999999764333221 122355554333332 1111110000 0000
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
+.+ ++. |.++.. ..+.|+++|. ++...|-+==+ .++
T Consensus 118 Vty------l~V-----------------~~~G~v------------~~e~L~~al~--------~~T~LVSim~a-NnE 153 (386)
T COG1104 118 VTY------LPV-----------------DSNGLV------------DLEQLEEALR--------PDTILVSIMHA-NNE 153 (386)
T ss_pred EEE------eCC-----------------CCCCeE------------cHHHHHHhcC--------CCceEEEEEec-ccC
Confidence 000 000 000000 0366777775 23455555555 889
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh-hccCCCccchheeEeCHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG-KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg-K~LggG~~Plsavl~~~~i 707 (719)
-|.+.| .+++-++|+++|++|.+|=||. +||.= .-.+.+ .-|+++|+ -.++|- =.+|++..++.+
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i~~~~~--~vD~ls~SaHK~~Gp-kGiGaLyv~~~~ 219 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--IDLEEL--GVDLLSFSAHKFGGP-KGIGALYVRPGV 219 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee--cccccc--CcceEEeehhhccCC-CceEEEEECCCC
Confidence 999999 9999999999999999999995 75543 222222 37988874 445541 235666665543
No 256
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=97.70 E-value=0.0014 Score=71.95 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=58.8
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccC-CCccch
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPL 698 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg-gG~~Pl 698 (719)
.+|.-| +.-.|. ..+.+.+++|.++|++||+++|+||+...|-..+..+.........+++ +++|.+| .| +-+
T Consensus 146 v~l~~p--~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~Ri 221 (356)
T PRK08056 146 LFLCTP--NNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG-LRL 221 (356)
T ss_pred EEEeCC--cCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc-hhh
Confidence 334456 455676 4588999999999999999999999998773333211110011123343 6899999 78 799
Q ss_pred heeEe-CHHHHhhhc
Q 005009 699 AATLA-TNAVFDSFV 712 (719)
Q Consensus 699 savl~-~~~i~~~~~ 712 (719)
|.+++ ++++.+.+.
T Consensus 222 G~~v~~~~~~~~~l~ 236 (356)
T PRK08056 222 GYLVNSDDAAVARMR 236 (356)
T ss_pred eeeecCCHHHHHHHH
Confidence 99998 456666554
No 257
>PRK06348 aspartate aminotransferase; Provisional
Probab=97.70 E-value=0.0016 Score=72.23 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CCCccee---eehhccC-CCcc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv~PDIv---tlgK~Lg-gG~~ 696 (719)
.++..| +.-.|.+. +.+-+++|.++|++||+++|.||+...|--.+.......+ +..+.++ +|+|.+| .| +
T Consensus 166 v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 241 (384)
T PRK06348 166 IILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG-W 241 (384)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc-c
Confidence 344455 45556655 7889999999999999999999999876322221111111 1222233 7899998 78 7
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
=+|.+++++++.+.+.
T Consensus 242 RiG~~v~~~~~~~~~~ 257 (384)
T PRK06348 242 RIGYVIAPDYIIETAK 257 (384)
T ss_pred cceeeecCHHHHHHHH
Confidence 8899999998877653
No 258
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=97.68 E-value=0.00073 Score=74.92 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCC
Q 005009 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD 499 (719)
Q Consensus 420 ~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~ 499 (719)
+-.+++.+.+...... ...+...++++.|++..+ .+++++++||++|...++..+. -..
T Consensus 12 ~~~~~~~~~l~~~~~~----g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~----~~~---------- 70 (375)
T PRK11706 12 TELDYIQQAMSSGKLC----GDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD----IQP---------- 70 (375)
T ss_pred HHHHHHHHHHHcCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC----CCC----------
Confidence 3355666665543221 124556788888998876 4689999999999998887651 011
Q ss_pred ccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhcccccccc
Q 005009 500 TTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDI 578 (719)
Q Consensus 500 ~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~ 578 (719)
...||.-.-+|.+ +..++...|... ..++. ++.+
T Consensus 71 ------Gd~Viv~~~t~~~-~~~~~~~~G~~~----------------------------v~~d~d~~~~---------- 105 (375)
T PRK11706 71 ------GDEVIMPSYTFVS-TANAFVLRGAKI----------------------------VFVDIRPDTM---------- 105 (375)
T ss_pred ------CCEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCCcC----------
Confidence 2357776666664 333333222110 00000 0000
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEE
Q 005009 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (719)
Q Consensus 579 ~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI 658 (719)
..| .+.+++.+.+ ++.+|++ + . ..|.... +++|.++|++||+++|
T Consensus 106 -~~d------------------~~~le~~i~~--------~tk~i~~--~-~-~~G~~~~----~~~i~~la~~~~i~vI 150 (375)
T PRK11706 106 -NID------------------ETLIEAAITP--------KTRAIVP--V-H-YAGVACE----MDTIMALAKKHNLFVV 150 (375)
T ss_pred -CcC------------------HHHHHHhcCC--------CCeEEEE--e-C-CCCCccC----HHHHHHHHHHcCCEEE
Confidence 001 2456666541 3445552 2 2 2355444 7899999999999999
Q ss_pred EeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEe-CHHHHh
Q 005009 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLA-TNAVFD 709 (719)
Q Consensus 659 ~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~-~~~i~~ 709 (719)
.|++|+ +|..-. -...|---|+.+++ |.++.|- -|++++ ++++++
T Consensus 151 eD~a~a-~g~~~~---~~~~g~~~~~~~~Sf~~~K~l~~g~--gG~~~~~~~~~~~ 200 (375)
T PRK11706 151 EDAAQG-VMSTYK---GRALGTIGHIGCFSFHETKNYTAGE--GGALLINDPALIE 200 (375)
T ss_pred EECccc-cccccC---CeeeecCcCEEEEeCCCCccccccC--CeEEEECCHHHHH
Confidence 999995 543211 11122234888888 9995431 133444 467665
No 259
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=97.68 E-value=0.00078 Score=73.82 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=115.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|.+.+|+.+.+...... .+..+...+|.+.|++..+-. -+.++++++.++|+..+++... +.|
T Consensus 37 p~~~~~a~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l~-----~~g------- 100 (351)
T PRK14807 37 PEEVIKNIQEIVKSSQVN---IYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAFI-----NKG------- 100 (351)
T ss_pred CHHHHHHHHHHhhcCccc---CCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHhc-----CCC-------
Confidence 589999988876532211 122233456778888776532 2578888888888887776541 122
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..|+..+-+|.+... .....|. ..+++|-
T Consensus 101 ---------d~Vlv~~p~y~~~~~-~~~~~g~------------------------------~~~~v~~----------- 129 (351)
T PRK14807 101 ---------DVVIYPHPSFAMYSV-YSKIAGA------------------------------VEIPVKL----------- 129 (351)
T ss_pred ---------CEEEEeCCChHHHHH-HHHHcCC------------------------------eEEEeec-----------
Confidence 367777777764221 1111110 0111110
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
.+ + + .-| .+.+++.+.. .++.++++... +.-.|...+ .+++.++|++++.++
T Consensus 130 ---~~-~--~--~~d--------~~~l~~~~~~-------~~~k~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~ 181 (351)
T PRK14807 130 ---KE-D--Y--TYD--------VGSFIKVIEK-------YQPKLVFLCNP-NNPTGSVIE----REDIIKIIEKSRGIV 181 (351)
T ss_pred ---CC-C--C--CCC--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCCCCC----HHHHHHHHHhCCCEE
Confidence 00 0 0 000 2445555542 23445555443 666777776 677888899989999
Q ss_pred EEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
|+||++..|. |.... ....-.+.++ +|+|.+| .| +-+|.+++++++.+.+..
T Consensus 182 ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~ 237 (351)
T PRK14807 182 VVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNL 237 (351)
T ss_pred EEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHH
Confidence 9999997762 33111 1111123333 6899998 78 799999999999987754
No 260
>PRK07681 aspartate aminotransferase; Provisional
Probab=97.68 E-value=0.0021 Score=71.62 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=59.9
Q ss_pred EEEEE-EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc--e--eeehhccC-
Q 005009 620 IGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--I--ACYGKLLT- 692 (719)
Q Consensus 620 iAAvI-vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD--I--vtlgK~Lg- 692 (719)
+.+|+ ..| +.-.|.+. +.+-+++|.++|++||+++|.||++..|--.+... ....+.-.+| | -+|+|.+|
T Consensus 167 ~k~v~l~~P--~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 243 (399)
T PRK07681 167 AKMMILNFP--GNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSL 243 (399)
T ss_pred ceEEEEeCC--CCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence 34444 447 45556555 68888999999999999999999998762222211 1111111122 2 37899997
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++.+.+.
T Consensus 244 ~G-lRiG~~i~~~~l~~~~~ 262 (399)
T PRK07681 244 AG-SRIGYMIGNEEIVRALT 262 (399)
T ss_pred cc-ceeEEEecCHHHHHHHH
Confidence 67 68888999999988764
No 261
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.68 E-value=0.00034 Score=77.86 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=53.6
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCc-
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV- 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~- 695 (719)
++.+|++|.. ....|.+.+ +++|.++|++||+++|+|+++. .+-....+ ....|++ ...|.++|.-
T Consensus 131 ~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~l-----~~g~Di~v~S~tK~l~G~~~ 199 (378)
T TIGR01329 131 KTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNPL-----ELGADIVYHSATKFLAGHSD 199 (378)
T ss_pred CceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCChh-----hcCCcEEEEecceeccCCcc
Confidence 5678999976 677787776 9999999999999999999983 22111111 2245887 4689997621
Q ss_pred cchheeEeC-HHHHh
Q 005009 696 IPLAATLAT-NAVFD 709 (719)
Q Consensus 696 ~Plsavl~~-~~i~~ 709 (719)
.=.|+++++ +++.+
T Consensus 200 ~~~G~v~~~~~~~~~ 214 (378)
T TIGR01329 200 VMAGVLAVKGEEIAK 214 (378)
T ss_pred ceeEEEEeCcHHHHH
Confidence 124455564 44433
No 262
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.68 E-value=0.00057 Score=71.96 Aligned_cols=64 Identities=28% Similarity=0.141 Sum_probs=48.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---CHH-----------HHHHhhcC--CCcEEecCCCCC
Q 005009 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---NEV-----------PLMSYLRN--RVPVLVLPPLPQ 315 (719)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~~~-----------~l~~~~~~--~~pvlglP~~~~ 315 (719)
-+++|+....-++..+..+++.|+..|+++.|+|+|++... ... .|.+.-+. +.|+..||+.+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~ 241 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPE 241 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCC
Confidence 37999999999999999999999999999999999998221 111 12221111 689888998875
No 263
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=97.68 E-value=0.0028 Score=70.15 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=60.9
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc-cCCCcceeeehhccC
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~-~gv~PDIvtlgK~Lg 692 (719)
++.+|++. | +.-.|.+. +.+-+++|.++|++||+++|+||++..|--.|. +..... .+..-.+-+|||.+|
T Consensus 166 ~~~~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 166 KAKLMFINYP--NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred cceEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence 34455555 6 45556654 788899999999999999999999986632232 111111 112223448999996
Q ss_pred -CCccchheeEeCHHHHhhhc
Q 005009 693 -GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++++.+.
T Consensus 243 ~~G-lRiG~~i~~~~l~~~~~ 262 (385)
T PRK09276 243 MTG-WRIGFAVGNADLIAGLG 262 (385)
T ss_pred Ccc-hhheeeeCCHHHHHHHH
Confidence 56 57788999999888764
No 264
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=97.67 E-value=0.00034 Score=78.07 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||++|+..++.... +. ...|+..+..|+|.
T Consensus 49 ~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~-----~~----------------GD~Vl~~~~~y~~~ 104 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_pred CCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCCcHHH
Confidence 4566778999999998773 469999999999998887541 11 23678777777753
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+... . + . .+. +.+. .|
T Consensus 105 ~~~~~~~~~~----~----------g-------------i-~v~----------------~vd~-------~d------- 126 (386)
T PRK08045 105 YRLFDSLAKR----G----------C-------------Y-RVL----------------FVDQ-------GD------- 126 (386)
T ss_pred HHHHHHHHhh----C----------C-------------e-EEE----------------EeCC-------CC-------
Confidence 2111111100 0 0 0 000 0000 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++... -. .....
T Consensus 127 -~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~-----~~pl~ 186 (386)
T PRK08045 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-AL-----QNPLA 186 (386)
T ss_pred -HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-cc-----CCchh
Confidence 134555553 24567888865 666677776 899999999999999999998532 11 11122
Q ss_pred CCccee--eehhccCC--CccchheeEe-CHHHHhhh
Q 005009 680 CVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg--G~~Plsavl~-~~~i~~~~ 711 (719)
...|++ .+.|-++| + .-.|++++ ++++.+.+
T Consensus 187 ~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l 222 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTEL 222 (386)
T ss_pred hCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHH
Confidence 345877 58899975 3 33555656 46555433
No 265
>PRK06107 aspartate aminotransferase; Provisional
Probab=97.67 E-value=0.0024 Score=71.38 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=121.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++|+..|.. .++ - +|.+.+++.+.+++... ........+....+++.+.+..+.. .-+.+.+++++++|...+
T Consensus 34 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD-T-PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 5666665543 222 2 68899999987764221 1111222345567777776654431 125699999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... + .| ..|+.-+-+|.+.. ..+...+..
T Consensus 110 ~~~~~----~-~g----------------d~vl~~~p~y~~y~-~~~~~~~~~--------------------------- 140 (402)
T PRK06107 110 LMATL----E-AG----------------DEVIIPAPYWVSYP-DMVLANDGT--------------------------- 140 (402)
T ss_pred HHHhc----C-CC----------------CEEEEecCCCcCHH-HHHHHcCCE---------------------------
Confidence 86431 1 11 35666666555432 111111100
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+.. + -+ ..+ .+.+++.+. +...+.++.-| +.-.|. .
T Consensus 141 -~~~v~~~~~--------------~---~~--~~~--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~-~ 182 (402)
T PRK06107 141 -PVIVACPEE--------------Q---GF--KLT--------PEALEAAIT-------PRTRWLILNAP--SNPTGA-V 182 (402)
T ss_pred -EEEecCCcc--------------c---CC--CCC--------HHHHHhhcC-------cCceEEEEECC--CCCCCc-C
Confidence 001111100 0 00 000 244555443 12233444445 344564 4
Q ss_pred CCHHHHHHHHHHHHhc-CCcEEEeccccCccccCcccc-cccc--CCCccee---eehhccC-CCccchheeEeCHHHHh
Q 005009 638 VDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETT-ADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~-gilLI~DEVqTGfGRtG~~~a-~e~~--gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
.+.+-++++.++|++| |+++|+||+...+.-.+..+. .... +....++ .++|.++ .| +=+|.+++++++.+
T Consensus 183 ~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~ 261 (402)
T PRK06107 183 YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIA 261 (402)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHHH
Confidence 4788899999999998 999999999976533332111 1111 1222355 4599997 78 68888999999888
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 262 ~~~ 264 (402)
T PRK06107 262 AIN 264 (402)
T ss_pred HHH
Confidence 764
No 266
>PRK03321 putative aminotransferase; Provisional
Probab=97.66 E-value=0.00048 Score=75.26 Aligned_cols=87 Identities=13% Similarity=0.222 Sum_probs=59.6
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCcc-ccccccCCCccee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PDIv---tlgK~Lg-g 693 (719)
.+|++... +.-.|.+.+ .+++.++|++ +|+++|+||++..|-..+.. .......-.++++ +++|.+| .
T Consensus 147 ~~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 147 RLIFVCNP-NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred CEEEEeCC-CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 34444433 666788776 4566666665 69999999999877544432 1222223346666 6899998 6
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +-+|.+++++++++.+..
T Consensus 222 G-lRiG~~v~~~~~~~~~~~ 240 (352)
T PRK03321 222 G-LRVGYAVGHPEVIAALRK 240 (352)
T ss_pred H-HhhhhhcCCHHHHHHHHH
Confidence 8 789999999999988753
No 267
>PLN02509 cystathionine beta-lyase
Probab=97.65 E-value=0.00041 Score=79.16 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=51.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
+..+|++|-. ....|.+.+ +++|.++|++||+++|+||.+. .+-.+.. .+...|++ .+.|.|+| |
T Consensus 217 ~TklV~lesP-sNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~p-----l~~gaDivv~S~tK~l~G~g- 284 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHS- 284 (464)
T ss_pred CCeEEEEECC-CCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCCh-----hhcCCcEEEecCcccccCCC-
Confidence 4578889976 677776654 9999999999999999999984 3323332 23356887 57899986 3
Q ss_pred cchheeEe
Q 005009 696 IPLAATLA 703 (719)
Q Consensus 696 ~Plsavl~ 703 (719)
-.+++++.
T Consensus 285 dv~gG~v~ 292 (464)
T PLN02509 285 DVMAGVLA 292 (464)
T ss_pred ccceeEEE
Confidence 23444444
No 268
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=97.65 E-value=0.0065 Score=66.05 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=59.4
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC--CCCCHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH--GLVNEVPL 297 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~--~~~~~~~l 297 (719)
.+|+|||-..+++ +.....+....+. +|+|+....-++..+...++.++..+.+ ..+|+|+. .....+.+
T Consensus 204 ~~D~VIID~p~~~------~~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~~~~~~~~~i 275 (322)
T TIGR03815 204 GGDLVVVDLPRRL------TPAAETALESADL-VLVVVPADVRAVAAAARVCPELGRRNPD-LRLVVRGPAPAGLDPEEI 275 (322)
T ss_pred cCCEEEEeCCCCC------CHHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCCCCCCCHHHH
Confidence 3999999997643 1223444444443 7788887777787777777777766554 36678876 23456778
Q ss_pred HHhhcCCCcEEe-cCCCCC
Q 005009 298 MSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 298 ~~~~~~~~pvlg-lP~~~~ 315 (719)
++.+ +.|+++ ||+.+.
T Consensus 276 ~~~l--g~~v~~~Ip~d~~ 292 (322)
T TIGR03815 276 AESL--GLPLLGEVRDQRG 292 (322)
T ss_pred HHHh--CCCceeeCCCChh
Confidence 8888 899999 888654
No 269
>PRK09148 aminotransferase; Validated
Probab=97.64 E-value=0.0022 Score=71.81 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=60.3
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCcce----eeehhccC-C
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDI----ACYGKLLT-G 693 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDI----vtlgK~Lg-g 693 (719)
...++.-| +.-.|... +.+-+++|.++|++||+++|.||+...|---+..+. ...+.-.+|. -+|+|.+| -
T Consensus 167 ~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p 243 (405)
T PRK09148 167 IALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA 243 (405)
T ss_pred eEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCc
Confidence 34455556 44556554 788899999999999999999999976522222111 1111111332 37899998 6
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +=+|.+++++++.+.+.
T Consensus 244 G-lR~G~~v~~~~~i~~l~ 261 (405)
T PRK09148 244 G-WRMGFAVGNERLIAALT 261 (405)
T ss_pred c-hheeeeeCCHHHHHHHH
Confidence 7 68888999999988763
No 270
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=97.63 E-value=0.00049 Score=76.87 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=101.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++....|.++|+++.+ .+.+++++||++|+..++.... +.| ..|++....|.+.
T Consensus 50 ~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all-----~~G----------------d~Il~~~~~y~~~ 105 (388)
T PRK08861 50 SGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALL-----GPD----------------DLIVAPHDCYGGT 105 (388)
T ss_pred CCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHc-----CCC----------------CEEEEcCCchHHH
Confidence 456778899999999987 3789999999999999987552 122 3677767666542
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+..... +. +.....++ ..|
T Consensus 106 -~~~~~~~~~---~~-----------------------gi~v~~vd--------------~~d----------------- 127 (388)
T PRK08861 106 -YRLFNTRAN---KG-----------------------DFKVQFVD--------------QSD----------------- 127 (388)
T ss_pred -HHHHHHHHh---cC-----------------------CeEEEEEC--------------CCC-----------------
Confidence 211110000 00 00000000 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~ 678 (719)
.+.+++.+. ++..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. |++. .-.
T Consensus 128 -~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~-------~pl 186 (388)
T PRK08861 128 -AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ-------KPL 186 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC-------CCc
Confidence 134555553 24578888865 666777776 7899999999999999999995 3211 112
Q ss_pred CCCcceee--ehhccCCC-ccchheeEeC-HHHHhh
Q 005009 679 GCVPDIAC--YGKLLTGG-VIPLAATLAT-NAVFDS 710 (719)
Q Consensus 679 gv~PDIvt--lgK~LggG-~~Plsavl~~-~~i~~~ 710 (719)
.+-.|+++ +.|-++|. =.-.|+++++ +++++.
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~ 222 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEE 222 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHH
Confidence 23478874 68988862 1223445564 455443
No 271
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.61 E-value=0.001 Score=80.24 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
||+|||.+.-.+.+ ....-++... --+|+|+..+.-...++..+++.+...|.++.|+|+|++
T Consensus 641 yD~IIIDtPP~~~~-----~Da~~la~~a-d~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~ 703 (726)
T PRK09841 641 YDLVIVDTPPMLAV-----SDAAVVGRSV-GTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 703 (726)
T ss_pred CCEEEEeCCCcccc-----chHHHHHHhC-CeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCc
Confidence 99999999532221 1223334443 356788888888889999999999999999999999997
No 272
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=97.61 E-value=0.0036 Score=69.30 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=61.2
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc-cCCCcceeeehhccC
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~-~gv~PDIvtlgK~Lg 692 (719)
++.+|++- | +.-.|... +.+-+++|.++|++||+++|.||++..+-..+. +..... ....-.+-+|+|.+|
T Consensus 164 ~~~~v~i~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 164 KAKLMFINYP--NNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN 240 (383)
T ss_pred cceEEEEeCC--CCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence 34455555 6 45566654 789999999999999999999999975532232 111111 111123348999997
Q ss_pred -CCccchheeEeCHHHHhhhc
Q 005009 693 -GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++.+.+.
T Consensus 241 ~~G-lRiG~~i~~~~l~~~~~ 260 (383)
T TIGR03540 241 MTG-WRIGMAVGNADLIAGLG 260 (383)
T ss_pred Ccc-ceeeEEeCCHHHHHHHH
Confidence 57 67888999999887664
No 273
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=97.61 E-value=0.0049 Score=69.75 Aligned_cols=216 Identities=14% Similarity=0.028 Sum_probs=116.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc--cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~--~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~ 476 (719)
.+|++..|--...-.....|++.+++.+.+...... .......+....+++.+....+.+ .-+.|++++++++|...
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 677665543222222332467888888877642211 111122344445555554432211 02579999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... ..| ..|+...-+|......+ ...+..
T Consensus 133 ~~~~l~-----~~G----------------d~Vlv~~P~y~~y~~~~-~~~g~~-------------------------- 164 (430)
T PLN00145 133 IMSVLA-----QPG----------------ANILLPRPGYPLYEARA-VFSGLE-------------------------- 164 (430)
T ss_pred HHHHhc-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCE--------------------------
Confidence 888651 122 35777777776632221 111100
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
...++.+.. ++ | .-| .+.+++.+. ....+.+|.-|- .--|.
T Consensus 165 --~~~~~~~~~-------------~~----~--~~d--------~~~l~~~~~-------~~~~~i~i~~P~--NPtG~- 205 (430)
T PLN00145 165 --VRHFDLLPE-------------RG----W--EVD--------LEGVEALAD-------ENTVAMVIINPN--NPCGS- 205 (430)
T ss_pred --EEEeeCCcc-------------cC----C--cCC--------HHHHHHHhC-------cCceEEEEeCCC--CCCCC-
Confidence 001111000 00 0 001 245665553 235677778783 44565
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee---eehhc-cCCCccchheeEe
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKL-LTGGVIPLAATLA 703 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv---tlgK~-LggG~~Plsavl~ 703 (719)
+.+.+-+++|.++|++||+++|.||+...|---+. +-....++-...++ .|+|. +..| +=+|.+++
T Consensus 206 v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~ 276 (430)
T PLN00145 206 VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIAT 276 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEE
Confidence 45788899999999999999999999976532222 11111111122233 68999 4456 57777876
No 274
>PRK08064 cystathionine beta-lyase; Provisional
Probab=97.60 E-value=0.00052 Score=76.69 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=52.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC--C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG--G 694 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg--G 694 (719)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||.+..+ -.... .....|+++ +.|.++| |
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~-----~~~g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP-----LDLGADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc-----hhhCCcEEEeecceeccCCcc
Confidence 4578888865 555677766 899999999999999999998532 11111 112358874 6799874 2
Q ss_pred ccchheeEe-CHHHHhhh
Q 005009 695 VIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 695 ~~Plsavl~-~~~i~~~~ 711 (719)
.+ .|++++ ++++.+.+
T Consensus 207 ~l-aG~~v~~~~~~~~~l 223 (390)
T PRK08064 207 VL-AGLAVVKDEELAQKL 223 (390)
T ss_pred ce-eEEEEeCCHHHHHHH
Confidence 11 133444 45666654
No 275
>PRK07337 aminotransferase; Validated
Probab=97.60 E-value=0.0028 Score=70.36 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=61.0
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~ 695 (719)
.+.++.-| +.-.|... +.+-+++|.++|++||+++|+||+..+|.-.+..... ....++++ +++|.+| .|
T Consensus 165 ~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G- 238 (388)
T PRK07337 165 RGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMTG- 238 (388)
T ss_pred eEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCch-
Confidence 34455556 34456544 6888999999999999999999999877544432111 12335655 6799996 57
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+=+|.+++.+++.+.+.
T Consensus 239 ~RiG~~~~~~~l~~~l~ 255 (388)
T PRK07337 239 WRLGWLVVPEALVGTFE 255 (388)
T ss_pred hheeeeecCHHHHHHHH
Confidence 57888999998887664
No 276
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.60 E-value=0.00029 Score=73.00 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC-CChHHH
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRF 92 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~d~~~ 92 (719)
|+.+.|+|. +|+|||+++..|++.|. ++|++|+++|+..++... ..|+..
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~-----~~G~~V~viK~~~~~~d~~~~Dt~r 51 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK-----ERGYRVATAKHTHHEFDKPDTDTYR 51 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH-----hCCCeEEEEEecccCCCCCCchHHH
Confidence 568999999 89999999999999994 789999999998775442 345443
No 277
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=97.60 E-value=0.0018 Score=71.12 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-c--ccCC--Cccee--eehhcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-D--LLGC--VPDIA--CYGKLL 691 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e--~~gv--~PDIv--tlgK~L 691 (719)
++.+|++... +.-.|... +.+-+++|.++|++||+++|.||++..|...+..... . ..+. ..-|+ +|+|.+
T Consensus 142 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSP-GNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCC-CCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc
Confidence 4566776654 56667655 6788899999999999999999999766544432111 1 0011 12244 799997
Q ss_pred C-CCccchheeEeCHHHHhhhc
Q 005009 692 T-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~~ 712 (719)
+ .| +=+|.+++++++.+.+.
T Consensus 220 ~~~G-~R~G~~i~~~~~~~~~~ 240 (357)
T TIGR03539 220 NLAG-YRAGFVAGDPALVAELL 240 (357)
T ss_pred CCCc-eeEEEEecCHHHHHHHH
Confidence 5 45 56778899998887663
No 278
>PLN02656 tyrosine transaminase
Probab=97.59 E-value=0.0073 Score=67.73 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=54.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhc-cCC
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LTG 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~-Lgg 693 (719)
..+.++.-| +.-.|.+. +.+-+++|.++|++||+++|+||+...|--.|+.+ ....++-..-++ +|||. ...
T Consensus 170 ~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p 246 (409)
T PLN02656 170 TVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP 246 (409)
T ss_pred ceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCc
Confidence 456677777 34455554 67889999999999999999999998764333221 111111111233 69999 445
Q ss_pred CccchheeEeC
Q 005009 694 GVIPLAATLAT 704 (719)
Q Consensus 694 G~~Plsavl~~ 704 (719)
| +=+|.+++.
T Consensus 247 G-lRiG~~i~~ 256 (409)
T PLN02656 247 G-WRLGWFVTT 256 (409)
T ss_pred c-eeEEEEEEe
Confidence 7 688888883
No 279
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.58 E-value=0.00047 Score=78.19 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++...+|+++|+++.+. +..+.++||++|+.+|+.... +.| ..||+....|+|
T Consensus 65 r~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll-----~~G----------------d~VI~~~~~y~~ 120 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLA-----GAG----------------DHIVTSPRLYGG 120 (437)
T ss_pred CccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCccHH
Confidence 34577788999999998873 578899999999998876541 122 267777666666
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.......... ..|. . + ..++.| +|
T Consensus 121 t~~~~~~~l~--------------~~Gi--~---v------~~vd~~---------------~d---------------- 144 (437)
T PRK05613 121 TETLFLVTLN--------------RLGI--E---V------TFVENP---------------DD---------------- 144 (437)
T ss_pred HHHHHHHHHH--------------hcCe--E---E------EEECCC---------------CC----------------
Confidence 3111001000 0000 0 0 000000 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. ...-|.+.+ +++|.++|+++|+++|+|.+|. . |..+---.+
T Consensus 145 --~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~---g~~~~p~~~ 205 (437)
T PRK05613 145 --PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-T---AALVRPLEL 205 (437)
T ss_pred --HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-c---ccccChHHh
Confidence 245666654 23567888875 454466777 9999999999999999999994 2 222211233
Q ss_pred CCCcceee--ehhccCC
Q 005009 679 GCVPDIAC--YGKLLTG 693 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg 693 (719)
| .|+++ +-|-++|
T Consensus 206 G--aDivv~S~~K~l~G 220 (437)
T PRK05613 206 G--ADVVVASLTKFYTG 220 (437)
T ss_pred C--CCEEEeeccceecC
Confidence 4 49885 5688876
No 280
>PRK08363 alanine aminotransferase; Validated
Probab=97.58 E-value=0.0029 Score=70.53 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhcc-CCCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLL-TGGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~L-ggG~~ 696 (719)
+.++.-| +.-.|... +.+-+++|.++|++||+++|.||+...+--.|.......+.-...++ +|+|.. ..| +
T Consensus 169 ~v~l~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-l 244 (398)
T PRK08363 169 AIAVINP--NNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-W 244 (398)
T ss_pred EEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-c
Confidence 3444455 44456655 67889999999999999999999987652223221111111122233 789995 456 5
Q ss_pred chheeEe--CHHHHh
Q 005009 697 PLAATLA--TNAVFD 709 (719)
Q Consensus 697 Plsavl~--~~~i~~ 709 (719)
=+|.+++ .+++.+
T Consensus 245 RiG~~~~~~~~~~~~ 259 (398)
T PRK08363 245 RLGYIYFVDPEGKLA 259 (398)
T ss_pred eEEEEEEeCcHHHHH
Confidence 7777887 554443
No 281
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=97.57 E-value=0.0022 Score=70.35 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=57.5
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCcceeeehhccC-CCccchh
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLA 699 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDIvtlgK~Lg-gG~~Pls 699 (719)
.++..| +.-.|... +.+-++++.++|++ ++++|.||++..|...+.... .+..+-..-+-+|+|.+| .| +-+|
T Consensus 158 i~l~~p--~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG 232 (357)
T PRK14809 158 VYLTSP--HNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAG-LRLG 232 (357)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcc-hhhe
Confidence 444455 66677776 45556777777764 789999999987754333221 111111112337999998 68 7999
Q ss_pred eeEeCHHHHhhhcC
Q 005009 700 ATLATNAVFDSFVG 713 (719)
Q Consensus 700 avl~~~~i~~~~~~ 713 (719)
.+++++++++.+..
T Consensus 233 ~~~~~~~~~~~~~~ 246 (357)
T PRK14809 233 YAVVPEEWADAYAR 246 (357)
T ss_pred eeecCHHHHHHHHH
Confidence 99999999887753
No 282
>PRK09105 putative aminotransferase; Provisional
Probab=97.57 E-value=0.0012 Score=72.99 Aligned_cols=209 Identities=14% Similarity=0.079 Sum_probs=120.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+..+. ..+|. +|.+.+|+.+.+..... +..+...+|-+.+++..+-. -+.|++++++++|...++.
T Consensus 44 ~~i~l~~~~--~~~~~--~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNANE--CPLGP--SPAARDAAARSAALSGR-----YDLELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCCC--CCCCC--CHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 566665542 23443 68999999887654322 22223556777787766533 3689999999999998887
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... .. ..+|+..+-+|.+.... ....|.
T Consensus 114 ~l~-----~~----------------gd~Vli~~P~y~~~~~~-~~~~g~------------------------------ 141 (370)
T PRK09105 114 AFT-----SP----------------TAGLVTADPTYEAGWRA-ADAQGA------------------------------ 141 (370)
T ss_pred HHc-----CC----------------CCEEEEeCCChHHHHHH-HHHcCC------------------------------
Confidence 651 11 23677777666553221 111111
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+.+|.. .+ + ..| .+.+++.. ......++..| +.-.|.+. +
T Consensus 142 ~~~~v~~~-------------~~----~--~~d--------~~~l~~~~--------~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 142 PVAKVPLR-------------AD----G--AHD--------VKAMLAAD--------PNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred eEEEecCC-------------CC----C--CCC--------HHHHHhcC--------CCCCEEEEeCC--CCCCCcCc-C
Confidence 01111100 00 0 000 12333221 12234566777 45567765 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+-++++.+.|+ +|+++|+||++..|+.. . ...+..+..++++ +|+|.+| .| +-+|.+++++++++.+.
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~-~-s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~ 256 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSDA-P-SVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLA 256 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhccC-c-chHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHH
Confidence 666777777664 59999999999767431 1 1112122345654 6899997 68 68899999999888764
No 283
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.57 E-value=0.0082 Score=68.03 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++.........++++|. +|+|||++++.|+..|. ++|++|...-
T Consensus 87 ~~~~~~~~p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 87 EPLVLPLKPQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred cccccCCCCeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 33333334457889997 99999999999999994 6788887754
No 284
>PRK11519 tyrosine kinase; Provisional
Probab=97.56 E-value=0.00083 Score=80.86 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=48.3
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
+|+|||.+. |...-....-+++..+.. |+|+....-....+..+++.++..+.++.|+|+|++
T Consensus 636 yD~ViiDtp-----P~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v 698 (719)
T PRK11519 636 YDLVLIDTP-----PILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698 (719)
T ss_pred CCEEEEeCC-----CcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999994 332222344566666654 677777766788888899999999999999999998
No 285
>PRK05942 aspartate aminotransferase; Provisional
Probab=97.56 E-value=0.0031 Score=70.22 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=61.1
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc-cCCCcceeeehhccC
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~-~gv~PDIvtlgK~Lg 692 (719)
++.++++- | +.-.|.+ .+.+-+++|.++|++||+++|+||+..-|-..|. ...... .+..-.+-+|+|.+|
T Consensus 170 ~~k~i~l~~P--~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 170 QAKILYFNYP--SNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN 246 (394)
T ss_pred cceEEEEcCC--CCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence 34455554 6 4555655 4788899999999999999999999875532222 111111 112223447999996
Q ss_pred -CCccchheeEeCHHHHhhhc
Q 005009 693 -GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++.+.+.
T Consensus 247 ~~G-lRiG~i~~~~~l~~~l~ 266 (394)
T PRK05942 247 MAG-WRVGFVVGNRHIIQGLR 266 (394)
T ss_pred Chh-hheeeeecCHHHHHHHH
Confidence 57 67888999999988775
No 286
>PRK05967 cystathionine beta-lyase; Provisional
Probab=97.56 E-value=0.00053 Score=76.77 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=101.3
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+.+-+. +..++++||.+|+..++...+ +.| ..||..+..|.|.
T Consensus 61 ~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all-----~~G----------------D~Vlv~~~~Y~~~ 116 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFL-----SPG----------------DHALIVDSVYYPT 116 (395)
T ss_pred CCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhc-----CCC----------------CEEEEccCCcHHH
Confidence 4577788899999886542 356778889999998885541 222 3688888888774
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+.. ..+. .+ .+-+. .+
T Consensus 117 ~~l~~~~l~--------------~~Gi-----~v-------------------------~~vd~-------~~------- 138 (395)
T PRK05967 117 RHFCDTMLK--------------RLGV-----EV-------------------------EYYDP-------EI------- 138 (395)
T ss_pred HHHHHHHHH--------------hcCe-----EE-------------------------EEeCC-------CC-------
Confidence 321101110 0000 00 00010 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. .+.-+ ...-+++|.++|+++|+++|+|+++.. + ..+.-..
T Consensus 139 -~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~----p--~~~~pl~ 198 (395)
T PRK05967 139 -GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWAT----P--LYFRPLD 198 (395)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccC----c--eecChhH
Confidence 134566654 24678999964 34333 344499999999999999999999953 2 1122222
Q ss_pred CCccee--eehhccCC-CccchheeEeCHHHHhhh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
.-.||+ -+.|-++| |=+=+|+++.++++++.+
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l 233 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQL 233 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHH
Confidence 346777 47899987 213345566677655433
No 287
>PRK09028 cystathionine beta-lyase; Provisional
Probab=97.55 E-value=0.00063 Score=76.19 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=55.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+...|++|.. ..-.|.+.+ +++|.++|++||+++|+||++.. +. .+.-+..-.|+++ .-|-|+| |=
T Consensus 146 ~TklV~lesp-sNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~GaDivv~S~tK~l~Gh~d 214 (394)
T PRK09028 146 NTKVLFLESP-GSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEMGVDISIQAATKYIVGHSD 214 (394)
T ss_pred CceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc----cc--cCCccccCceEEEEeCCeEecCCCC
Confidence 4679999986 565555544 89999999999999999999952 21 2222234578884 6899976 21
Q ss_pred cchheeEeCHHHHhhh
Q 005009 696 IPLAATLATNAVFDSF 711 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~ 711 (719)
+=.|+++.++++++.+
T Consensus 215 ~~~G~~~~~~~~~~~l 230 (394)
T PRK09028 215 VMLGTATANEKHWDQL 230 (394)
T ss_pred EEEEEEECCHHHHHHH
Confidence 2334555566655433
No 288
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.55 E-value=0.00059 Score=77.34 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=97.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||++|+..|+...+ +.| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll-----~~G----------------d~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLM-----GAG----------------SHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCccHHH
Confidence 4567788999999998874 458999999999999987552 112 3688887777763
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+... .. + .+ .. +.|-|.+ |
T Consensus 117 -~~~~~~~-l~--~----------~G-------------i~-----------------v~~vd~~-------d------- 138 (433)
T PRK08134 117 -HNLLHYT-LR--R----------FG-------------IE-----------------TTFVKPG-------D------- 138 (433)
T ss_pred -HHHHHHH-Hh--h----------CC-------------eE-----------------EEEECCC-------C-------
Confidence 2211100 00 0 00 00 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.|. .++.+|++|-+ ....|.+.+ +++|.++|++||+++|+|.+|. . |... .-..
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~---~~~~--~pl~ 198 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-T---PYLL--RPFE 198 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc-c---cccC--Cchh
Confidence 245666664 25678899986 677777777 9999999999999999999994 1 2211 1123
Q ss_pred CCcceee--ehhccCC
Q 005009 680 CVPDIAC--YGKLLTG 693 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg 693 (719)
.-.|+++ ..|-++|
T Consensus 199 ~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 199 HGADLVYHSATKFLGG 214 (433)
T ss_pred cCCCEEEeccccccCC
Confidence 4568875 4577765
No 289
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=97.54 E-value=0.0015 Score=75.03 Aligned_cols=203 Identities=12% Similarity=0.021 Sum_probs=109.0
Q ss_pred CHHHHHHHHHhhhhcccccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 005009 418 QIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~ 492 (719)
.|.|.+++.+......+... .....+...++.+.++++.+-+ +..++.++|+.+...++.++ |.+...+|.
T Consensus 83 ~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~-r~~~~~~Gd- 158 (481)
T PRK04366 83 NPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMI-RAYHEARGD- 158 (481)
T ss_pred CHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHH-HHHhhccCc-
Confidence 67888888765222222111 1112355667888888888732 23556678888887777766 444333221
Q ss_pred ccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 493 ~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
..|.+||..+. .|.....++...|.. ...++....+
T Consensus 159 -----------~~~~~Vlv~~~-~hp~~~~~~~~~G~~----------------------------vv~v~~~~~~---- 194 (481)
T PRK04366 159 -----------TKRTEVIVPDS-AHGTNPASAAMAGFK----------------------------VVEIPSNEDG---- 194 (481)
T ss_pred -----------CCCCEEEEcCC-ccHhHHHHHHHcCCE----------------------------EEEeecCCCC----
Confidence 13456766665 556555443332210 0111111000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHH
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
.-| .+.+++.+. .++++|++ -| . ..|.+ ..-+++|.++|+
T Consensus 195 -----------------~~D--------~e~L~~~i~--------~~t~~V~v~~P--n-~tG~~---~~dl~eI~~~a~ 235 (481)
T PRK04366 195 -----------------LVD--------LEALKAAVG--------EDTAALMLTNP--N-TLGLF---ERNILEIAEIVH 235 (481)
T ss_pred -----------------CcC--------HHHHHhhcc--------cCCeEEEEeCC--C-Ccccc---chHHHHHHHHHH
Confidence 001 245555553 23455554 34 2 34543 123899999999
Q ss_pred hcCCcEEEeccccCccccCccccccccCCCcceeee-h-hccCC----CccchheeEeCHHHHhhh
Q 005009 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-G-KLLTG----GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl-g-K~Lgg----G~~Plsavl~~~~i~~~~ 711 (719)
++|+++|+|+++. .+-+|.. ....+| .|+++. + |.|++ |--=+|.+.+++++.+.+
T Consensus 236 ~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l 297 (481)
T PRK04366 236 EAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL 297 (481)
T ss_pred HcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence 9999999999994 2333432 222333 598854 3 88762 201245567788777665
No 290
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=97.53 E-value=0.0029 Score=73.34 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=117.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
.+|++..|.- ..+|....+++++++.+.+.............+....+++.+...-+.+ ..+.|+++++++||...++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 5666655432 2456643678999998877543221111122334455555554322111 1357999999999998888
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... ..| ..|+...-+|......+. +.|..
T Consensus 226 ~~l~-----~~G----------------d~Vli~~P~y~~y~~~~~-~~g~~---------------------------- 255 (517)
T PRK13355 226 SALL-----DDG----------------DEVLIPSPDYPLWTACVN-LAGGT---------------------------- 255 (517)
T ss_pred HHhC-----CCC----------------CEEEEcCCCCcCHHHHHH-HCCCE----------------------------
Confidence 7551 112 367877777766443221 11110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
.+.+|- +.+.-| ..| .+.+++.+. +..-+.+|.-| +.-.|.+.
T Consensus 256 --~v~~~~---------------~~~~~~--~~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 256 --AVHYRC---------------DEQSEW--YPD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred --EEEeec---------------CcccCC--CCC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 011110 000000 001 244555553 22335667778 34556655
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcce--e---eehhccC-CCccchheeEeC
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLAT 704 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDI--v---tlgK~Lg-gG~~Plsavl~~ 704 (719)
+.+.+++|.++|++||+++|.||+..-|---|..+. ....+.||. + +|+|..+ .| +=+|.++++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~ 368 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILS 368 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCcc-cceEEEEee
Confidence 689999999999999999999999976522232111 001123564 2 3799964 36 467777743
No 291
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=97.52 E-value=0.0068 Score=67.49 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=57.4
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--ccc-c---cccCC-Ccc-ee---eehhc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-A---DLLGC-VPD-IA---CYGKL 690 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a-~---e~~gv-~PD-Iv---tlgK~ 690 (719)
.++.-| +.=.|.+. +.+-+++|.++|++|++++|.||+..-|--.+. ... . ...+. ..| ++ +|+|.
T Consensus 170 i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 170 LFVCSP--GNPTGAVL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred EEEcCC--CCCcCccC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 344456 45556654 789999999999999999999999976521221 111 1 11111 112 22 79997
Q ss_pred cC-CCccchheeEeCHHHHhhhc
Q 005009 691 LT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 691 Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+ .| +-+|.+++++++++.+.
T Consensus 247 ~~~~G-lRiG~~~~~~~l~~~~~ 268 (396)
T PRK09147 247 SNVPG-LRSGFVAGDAALLKKFL 268 (396)
T ss_pred cCCcc-ceeeeecCCHHHHHHHH
Confidence 64 46 68888999999887664
No 292
>PRK07582 cystathionine gamma-lyase; Validated
Probab=97.51 E-value=0.00075 Score=74.76 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=55.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCccccccccCCCccee--eehhccCC--
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTG-- 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-- 693 (719)
++..|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .+| . .-....+|++ ++.|.|+|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~---~----~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLG---Q----RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCccc---c----CchhcCCcEEEecccccccCCC
Confidence 4556777865 566665555 8999999999999999999984 332 1 1112346887 57899976
Q ss_pred CccchheeEeC-HHHHhhh
Q 005009 694 GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 694 G~~Plsavl~~-~~i~~~~ 711 (719)
| +-+|+++++ +++.+.+
T Consensus 200 g-~~~G~v~~~~~~l~~~l 217 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAV 217 (366)
T ss_pred C-eeEEEEEcCcHHHHHHH
Confidence 4 345667764 6666654
No 293
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=97.50 E-value=0.0022 Score=73.11 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=46.2
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcceeee--hhccCCCccchheeEeCHHHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~ 708 (719)
.-|+..+ +++|.++|+++|++|++|++|+ +|..+.. +... .. ..|++++ .|.|+|-. -|.+++++++.
T Consensus 192 ~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~-~~-~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~ 262 (452)
T PTZ00094 192 AYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSP-FP-YADVVTTTTHKSLRGPR--SGLIFYRKKVK 262 (452)
T ss_pred CCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCC-CC-CCcEEEcCCccCCCCCC--ceEEEEecccc
Confidence 3556777 8999999999999999999995 6666542 1111 11 4798865 59886631 24566666543
No 294
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=97.49 E-value=0.00071 Score=68.84 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=111.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (719)
.+.+.||+--.||||||.|+.|..+|. ++|+||+..-- --|-. .-|- .-++ -|-+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA-----~~GkKv~liD~-DiGLR-NLDl------imGl------------E~Ri 56 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALA-----QLGKKVVLIDF-DIGLR-NLDL------IMGL------------ENRI 56 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHH-----HcCCeEEEEec-CcCch-hhhh------hhcc------------ccee
Confidence 467899999999999999999999994 88999987651 11110 0010 0010 0000
Q ss_pred hhhhHHHhhhhccCCCCCCCCccCCcccccc-ccccccc---ccCCCCCccccccccceeecccCcChHHHHhHhcCCCC
Q 005009 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDL-NFREENR---ISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (719)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (719)
.||+ ||=+++. |.-.-|+ .+.|++.++. +..+. ...+
T Consensus 57 ---------------------------VYd~vdVi~g~~~l~QALIkDK-----r~~nL~lLPA------sQtrd-Kdal 97 (272)
T COG2894 57 ---------------------------VYDLVDVIEGEATLNQALIKDK-----RLENLFLLPA------SQTRD-KDAL 97 (272)
T ss_pred ---------------------------eeeehhhhcCccchhhHhhccc-----cCCceEeccc------ccccC-cccC
Confidence 0110 1111111 0001111 3456665521 11122 4466
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+.++... .+|++||..--|+-.+ +..|-..--.+|+|......++..+---+.
T Consensus 98 t~E~v~~vv~eL~~~------------~fDyIi~DsPAGIE~G-------~~~A~~~Ad~AiVVtnPEvSsVRDsDRiiG 158 (272)
T COG2894 98 TPEGVKKVVNELKAM------------DFDYIIIDSPAGIEQG-------FKNAVYFADEAIVVTNPEVSSVRDSDRIIG 158 (272)
T ss_pred CHHHHHHHHHHHHhc------------CCCEEEecCcchHHHH-------HHhhhhccceEEEEcCCCccccccchhhee
Confidence 778887777777642 4999999985544332 334444444677888877666665555455
Q ss_pred HHHhCC------C-cEEEEEEccC--------CCCCHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 273 SLKLRG------Y-DVVAVVFEDH--------GLVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 273 ~l~~~~------~-~v~gvi~N~~--------~~~~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.|...+ - .-.-+|+|+. ..-..+.+.+.+ .+|++| ||...+
T Consensus 159 lLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL--~i~liGiiPed~~ 215 (272)
T COG2894 159 LLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEIL--SIPLIGVIPEDQD 215 (272)
T ss_pred ehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHh--CCceEEeecCchh
Confidence 554333 1 1257899997 123466777888 899999 888664
No 295
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=97.48 E-value=0.0055 Score=67.98 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=59.3
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc--ccccccCCCcc-ee---eehhccC-CC
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-IA---CYGKLLT-GG 694 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PD-Iv---tlgK~Lg-gG 694 (719)
.+|.-| +.=.|... +.+-+++|.++|++||+++|.||+..-|--.+.- -....+.-.-+ ++ +|||.+| .|
T Consensus 169 i~l~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 169 MVLSYP--HNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred EEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 344444 55567655 6888999999999999999999999866322321 11111111112 22 8999997 68
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+=+|.+++++++.+.+.
T Consensus 246 -lRiG~~v~~~~li~~l~ 262 (388)
T PRK07366 246 -FRIGFAIGNAQLIQALR 262 (388)
T ss_pred -hhheehcCCHHHHHHHH
Confidence 68889999999988764
No 296
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=97.48 E-value=0.0009 Score=75.49 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc----cc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----AD 676 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a----~e 676 (719)
.+.|++.|.+ .+..+++.|.+|=.+...|| .+.|...+++++++|++||+.||.|=.+. ||- + +|- -.
T Consensus 156 ~~~Le~aI~~----~~~~~~~lV~~e~t~N~~GG-~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g 227 (450)
T TIGR02618 156 LKKLQKLIDE----VGADKIPYICLAVTVNLAGG-QPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQG 227 (450)
T ss_pred HHHHHHHhcc----ccCcccCceEEEEecccCCC-eeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhccccc
Confidence 3667777764 23345556666633244455 45678899999999999999999998885 321 1 110 00
Q ss_pred ccCC-----------CcceeeehhccCCCccchheeEe--CHHHHhhh
Q 005009 677 LLGC-----------VPDIACYGKLLTGGVIPLAATLA--TNAVFDSF 711 (719)
Q Consensus 677 ~~gv-----------~PDIvtlgK~LggG~~Plsavl~--~~~i~~~~ 711 (719)
+.+. -.|. |++|+.-.+..|+|.+++ ++++++..
T Consensus 228 ~~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~ 274 (450)
T TIGR02618 228 YEDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSA 274 (450)
T ss_pred ccCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHH
Confidence 1121 2355 777888544478888888 66666653
No 297
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.47 E-value=0.0015 Score=79.44 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.+...+|.+.|++++| ++.+ ++-+||+.|+-+++... |.|+..+|. +.|+ ++....+-||..
T Consensus 542 lq~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge------------~~r~-~vLIp~saHgtN 604 (954)
T PRK12566 542 RAMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQ------------SQRD-ICLIPSSAHGTN 604 (954)
T ss_pred HHHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCC------------CCCC-EEEecccccccC
Confidence 4456789999999998 4555 44569999888888887 888777664 4454 455556778766
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..++...|. ..+.+| .+ .+.. -|
T Consensus 605 pasa~~~Gi------------------------------eVv~Vp--------------~D-~~G~----iD-------- 627 (954)
T PRK12566 605 PASAQMAGM------------------------------RVVIVE--------------CD-PDGN----VD-------- 627 (954)
T ss_pred HHHHHHCCC------------------------------EEEEec--------------cC-CCCC----cC--------
Confidence 544332221 111122 00 0000 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCccccccccC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLG 679 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~g 679 (719)
.+.|++.+++ ..++++||++--. ...|++.. -+++|.++|+++|+++++|=++. +.+.... -. .
T Consensus 628 le~L~a~I~~-----~~~~laaVmiT~P-nt~Gv~e~----~V~eI~~iah~~Galv~vDgA~~~a~~~l~~---Pg--~ 692 (954)
T PRK12566 628 LDDLKAKAAA-----AGDRLSCLMITYP-STHGVYEE----GIREICEVVHQHGGQVYMDGANLNAQVGLAR---PA--D 692 (954)
T ss_pred HHHHHHHhhc-----cCCCEEEEEEEec-CcCceecc----hHHHHHHHHHHcCCEEEEEeeChhhccCCCC---hh--h
Confidence 3567777763 3568888887643 33344433 38999999999999999999996 2211111 01 2
Q ss_pred CCcceeeeh--hccC----CCccc-hheeEeCHHHHhhhc
Q 005009 680 CVPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIvtlg--K~Lg----gG~~P-lsavl~~~~i~~~~~ 712 (719)
+-.|++++. |.++ +| .| ++.+.+++++...+.
T Consensus 693 ~GADi~~~s~HKtf~~P~G~G-GP~vG~iav~~~L~pfLp 731 (954)
T PRK12566 693 IGADVSHMNLHKTFCIPHGGG-GPGMGPIGVRAHLAPFVA 731 (954)
T ss_pred cCCCEEEecCCcccCcCccCC-CCccchhhhhhhhhhhcc
Confidence 346998765 8664 45 45 555577776666554
No 298
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.45 E-value=0.0073 Score=64.36 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.++| -+|+|||++++.|+..+. ++|++|...-
T Consensus 71 ~~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 456788888 599999999999999994 6788887654
No 299
>PRK08114 cystathionine beta-lyase; Provisional
Probab=97.44 E-value=0.00097 Score=74.66 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.+++++||..|+.+++...+ +.| ..||+....|+|
T Consensus 58 R~~nPt~~~le~~la~LEg~---~~a~~~~SGmaAi~~~~~~ll-----~~G----------------D~Vv~~~~~Yg~ 113 (395)
T PRK08114 58 RRGTLTHFSLQEAMCELEGG---AGCALYPCGAAAVANAILAFV-----EQG----------------DHVLMTGTAYEP 113 (395)
T ss_pred CCCChhHHHHHHHHHHHhCC---CeEEEEhHHHHHHHHHHHHHc-----CCC----------------CEEEEeCCCcHH
Confidence 34577888999999997653 688899999999999887542 122 257766666655
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
. ...+.-. .+.+|.- + ..++ ..|
T Consensus 114 t-~~l~~~~-------------l~~~Gi~-----v------~~vd----------------~~d---------------- 136 (395)
T PRK08114 114 T-QDFCSKI-------------LSKLGVT-----T------TWFD----------------PLI---------------- 136 (395)
T ss_pred H-HHHHHHH-------------HHhcCcE-----E------EEEC----------------CCC----------------
Confidence 3 2222100 0000000 0 0000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC--CcEEEeccccCccccCcccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g--ilLI~DEVqTGfGRtG~~~a~e 676 (719)
.+.+++.|. .+...|++|.+ .+..|.+.+ +++|.++|+++| +++|+|.+++ +|.. ++
T Consensus 137 --~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~~--~~ 195 (395)
T PRK08114 137 --GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGVL--FK 195 (395)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----cccc--cC
Confidence 134666664 24679999997 788888888 999999999985 9999999995 2333 44
Q ss_pred ccCCCcceee--ehhccCCC-ccchheeEeCHHHHhhh
Q 005009 677 LLGCVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSF 711 (719)
Q Consensus 677 ~~gv~PDIvt--lgK~LggG-~~Plsavl~~~~i~~~~ 711 (719)
-...-.|+++ .-|.|+|. =+=.|+++.++++++.+
T Consensus 196 pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l 233 (395)
T PRK08114 196 ALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQL 233 (395)
T ss_pred HHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHH
Confidence 4444589885 67988773 12345566677665533
No 300
>PRK06290 aspartate aminotransferase; Provisional
Probab=97.43 E-value=0.0087 Score=67.31 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=60.9
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCC-Cccee--eehhccC-
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGC-VPDIA--CYGKLLT- 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv-~PDIv--tlgK~Lg- 692 (719)
++.+|++- | +.=.|.+. +.+-+++|.++|++||+++|.||+...|--.+..-.+ +..+. ..+|+ +|||.+|
T Consensus 179 ~~k~i~l~nP--~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~ 255 (410)
T PRK06290 179 KAKLLYLNYP--NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNM 255 (410)
T ss_pred cceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCC
Confidence 34555555 7 45556655 7888999999999999999999999765211221111 11111 12343 7999996
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++++.+.
T Consensus 256 ~G-lRiG~ii~~~~l~~~l~ 274 (410)
T PRK06290 256 TG-WRLAFVVGNELIVKAFA 274 (410)
T ss_pred ch-hheEeEEeCHHHHHHHH
Confidence 57 67788999999988764
No 301
>PRK10867 signal recognition particle protein; Provisional
Probab=97.42 E-value=0.0081 Score=67.99 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=49.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHH---Hhhc-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-C---
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-L--- 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dl---a~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~--- 291 (719)
.+|+|||.++|-+. . +.....++ .+.. -..++||++...| ..++...+.+.. .+++.|+|+|+.. .
T Consensus 183 ~~DvVIIDTaGrl~--~-d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLH--I-DEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcc--c-CHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcccc
Confidence 49999999999543 2 12222222 2222 2357999997543 344444444443 4788999999983 2
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 005009 292 VNEVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgl 310 (719)
.....+...+ ++|+..+
T Consensus 257 G~alsi~~~~--~~PI~fi 273 (433)
T PRK10867 257 GAALSIRAVT--GKPIKFI 273 (433)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344455555 8998663
No 302
>PRK06836 aspartate aminotransferase; Provisional
Probab=97.40 E-value=0.0088 Score=66.66 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=56.4
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHh------cCCcEEEeccccCccccCccccccccCCCcc-ee--eehhc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKL 690 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k------~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv--tlgK~ 690 (719)
+.+|++-.. +.-.|... |.+-+++|.++|++ ||+++|.||+...|-..|.... ......+. ++ +++|.
T Consensus 169 ~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 169 TKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred ceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhh
Confidence 445555443 55566655 67888999999999 9999999999987632232111 00111123 33 58999
Q ss_pred cC-CCccchheeEeCHHHH
Q 005009 691 LT-GGVIPLAATLATNAVF 708 (719)
Q Consensus 691 Lg-gG~~Plsavl~~~~i~ 708 (719)
+| .| +-+|.+++++++.
T Consensus 246 ~~~pG-lRiG~~~~~~~~~ 263 (394)
T PRK06836 246 LSLPG-ERIGYIAVNPEME 263 (394)
T ss_pred ccCcc-eeeEEEecCHHHh
Confidence 98 68 6888899988763
No 303
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=97.40 E-value=0.007 Score=67.93 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=51.6
Q ss_pred EEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc-ee--eehhccC-C
Q 005009 620 IGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA--CYGKLLT-G 693 (719)
Q Consensus 620 iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD-Iv--tlgK~Lg-g 693 (719)
+.+|++ -| +.-.|... +.+-+++|.++|++||+++|.||+...|-..|.. .....+.-..+ |+ +|+|.+| .
T Consensus 178 ~~~i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p 254 (412)
T PTZ00433 178 TKALIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVP 254 (412)
T ss_pred ceEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCC
Confidence 344444 55 45556544 6788899999999999999999999876333321 11111111112 33 6899995 5
Q ss_pred CccchheeEe
Q 005009 694 GVIPLAATLA 703 (719)
Q Consensus 694 G~~Plsavl~ 703 (719)
| +=+|.+++
T Consensus 255 G-lRlG~~i~ 263 (412)
T PTZ00433 255 G-WRLGWLLL 263 (412)
T ss_pred C-eeEEEEEE
Confidence 7 68888886
No 304
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=97.39 E-value=0.0011 Score=74.98 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
.+.|++.+.+ .+..++++|+++ |. ...||. +.+.+.+++++++|++||+.||.|+++.
T Consensus 138 ~e~Le~~I~~----~~~~~~~~I~v~~p~-N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~ 196 (431)
T cd00617 138 VAKLEKLIDE----VGAENIPYIVLTITN-NTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARF 196 (431)
T ss_pred HHHHHHHhCc----ccCCCccEEEEECCc-CCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 3667777763 234568888887 43 334564 5579999999999999999999999975
No 305
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=97.39 E-value=0.01 Score=66.01 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=58.1
Q ss_pred EEEE-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccc----cccccCC--Cccee---ee
Q 005009 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET----TADLLGC--VPDIA---CY 687 (719)
Q Consensus 620 iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~----a~e~~gv--~PDIv---tl 687 (719)
+.++ +.-| +.=.|.+. +.+-+++|.++|++|++++|.||+...|-..+ ... .....+. .+.++ +|
T Consensus 166 ~k~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 166 CQLLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred ceEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 3444 4456 45556644 78899999999999999999999997653222 111 1111221 12233 79
Q ss_pred hhccC-CCccchheeEeCHHHHhhhc
Q 005009 688 GKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+|..+ .| +=+|.+++++++.+.+.
T Consensus 243 SK~~~~~G-lRvG~~i~~~~l~~~~~ 267 (393)
T TIGR03538 243 SKRSNLPG-LRSGFVAGDAEILKAFL 267 (393)
T ss_pred hhhcCCcc-cceEEEecCHHHHHHHH
Confidence 99754 46 67788999998877653
No 306
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=97.38 E-value=0.0023 Score=70.38 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=59.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCccee---eehhccC-C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-G 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDIv---tlgK~Lg-g 693 (719)
....++.-| +.=.|.+.+ -++|.++|+++++ +|+||+...|-..+..-. .....-.+.++ +|+|.+| .
T Consensus 149 ~~~~~l~nP--~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~ 221 (360)
T PRK07392 149 NDGLLLNNP--HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLP 221 (360)
T ss_pred CCEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCC
Confidence 345666677 555677766 4578889999986 666999988855443211 11112223344 7899999 8
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +-+|.+++++++++.+.
T Consensus 222 G-lRiG~~v~~~~~~~~~~ 239 (360)
T PRK07392 222 G-LRLGYAIAHPDRLQRWQ 239 (360)
T ss_pred c-hheeeeeCCHHHHHHHH
Confidence 9 79999999999988765
No 307
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.38 E-value=0.0031 Score=77.82 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
+...++.+.|++++|. +.+.| .|+|+.|+.++|..+ |.|..++|. ..| .+|....+-||+..
T Consensus 542 ~~i~e~q~~l~eltG~---d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~------------~~r-~~vlis~~aH~snp 604 (954)
T PRK05367 542 ELIDQLEAWLAEITGY---DAVSLQPNAGAQGEYAGLLAI-RAYHESRGE------------GHR-DVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHCC---CCEEECccHHHHHHHHHHHHH-HHHhhccCC------------CCC-CEEEEEchhhhhhH
Confidence 4566888899999884 44544 567888888888555 777655442 223 45666678888766
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
.++...|.. +..++.... .. -| .
T Consensus 605 ~sa~~~G~~----------------------------vv~v~~d~~-------------G~--------iD--------~ 627 (954)
T PRK05367 605 ASAVMAGMK----------------------------VVVVACDEN-------------GN--------ID--------L 627 (954)
T ss_pred HHHHHCCCE----------------------------EEEECCCCC-------------CC--------cC--------H
Confidence 554433211 011111100 00 01 3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
+.|++.+++ +..++++|++- |- ..|++..+ +++|.++|+++|+++++|-++.+ +-.|.- .-.. .
T Consensus 628 ~~L~~~i~~-----~~~~la~V~it~ps--t~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~-~pg~--~ 692 (954)
T PRK05367 628 DDLRAKAEE-----HADNLAAIMITYPS--THGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA-RPGD--I 692 (954)
T ss_pred HHHHHHHhc-----cCCCeEEEEEEcCC--CCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC-Chhh--c
Confidence 566777752 23467776654 43 33444455 89999999999999999999962 111211 0011 2
Q ss_pred Ccceeeeh--hccC----CCccc-hheeEeCHHHHhhhc
Q 005009 681 VPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDIvtlg--K~Lg----gG~~P-lsavl~~~~i~~~~~ 712 (719)
-.|+++++ |.++ +| -| +|.+.+++.+...+-
T Consensus 693 GADi~~~s~HK~f~~P~G~G-GPg~G~l~vr~~l~p~lp 730 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGG-GPGVGPIGVKAHLAPFLP 730 (954)
T ss_pred CCCEEEecCcccCCCCcCCC-CCceEEEeecccccccCC
Confidence 36998775 8774 33 24 445666766665543
No 308
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=97.37 E-value=0.016 Score=65.00 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhc-cC
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LT 692 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~-Lg 692 (719)
...+.+++-| +.-.|.+. +.+-+++|.++|++|++++|.||+...|-..|..+ ....+.-.+.++ +|||. ..
T Consensus 170 ~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 170 NTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred CCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 3456777788 44556655 78889999999999999999999998764334321 111121112233 78999 44
Q ss_pred CCccchheeEe
Q 005009 693 GGVIPLAATLA 703 (719)
Q Consensus 693 gG~~Plsavl~ 703 (719)
.| +-+|.+++
T Consensus 247 pG-lRvG~~v~ 256 (409)
T PLN00143 247 PG-WGLGWLVT 256 (409)
T ss_pred Cc-cceEEEEe
Confidence 57 68888888
No 309
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.36 E-value=0.0035 Score=63.87 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=51.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHH---HHHHHHHHhC-CCcEEEEEEccCCCC-CH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGT---ISAYESLKLR-GYDVVAVVFEDHGLV-NE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~---~~~~~~l~~~-~~~v~gvi~N~~~~~-~~ 294 (719)
.||+|||-+.|++..... ...++...--.+|+|+....-++..+ +..++.++.. +.++.|+|+|++... ..
T Consensus 116 ~yD~ilID~~g~~~~~~~----~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~ 191 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGF----AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRET 191 (212)
T ss_pred CCCEEEEecCCCceeccc----ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHH
Confidence 499999999654421110 01111111225677777665555444 4444444433 678999999999543 23
Q ss_pred HHHHHhhcC-CCcEEe-cCCC
Q 005009 295 VPLMSYLRN-RVPVLV-LPPL 313 (719)
Q Consensus 295 ~~l~~~~~~-~~pvlg-lP~~ 313 (719)
..+++..+. +.|+++ ||+.
T Consensus 192 ~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 192 ELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 333333333 899999 8863
No 310
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=97.36 E-value=0.005 Score=67.69 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=121.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+..+. ..+|. +|.+.+++.+.+..+... ......+|-+.+++..+-. -+.++++++++++...+++
T Consensus 20 ~~~~l~~~~--~~~~~--p~~~~~a~~~~~~~~~~Y-----~~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 89 (354)
T PRK06358 20 MILDFSANI--NPLGV--PESLKQAITENLDKLVEY-----PDPDYLELRKRIASFEQLD-LENVILGNGATELIFNIVK 89 (354)
T ss_pred ceEEecCCC--CCCCC--CHHHHHHHHHHHHhhhcC-----CCccHHHHHHHHHHHhCCC-hhhEEECCCHHHHHHHHHH
Confidence 478886643 33444 689999999876543322 1122345666677665432 3689999999999988876
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.. . + .+|+..+-+|+.....+. ..|.
T Consensus 90 ~~-----~----------------~--~~v~i~~P~y~~~~~~~~-~~g~------------------------------ 115 (354)
T PRK06358 90 VT-----K----------------P--KKVLILAPTFAEYERALK-AFDA------------------------------ 115 (354)
T ss_pred Hh-----C----------------C--CcEEEecCChHHHHHHHH-HcCC------------------------------
Confidence 53 1 1 257777778876432221 1110
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+++| ... ++.+ ..| +.+.+.+. ...-+.++.-| +.-.|... +
T Consensus 116 ~~~~~~--------------~~~-~~~~--~~d---------~~~~~~~~-------~~~~~v~~~~P--~NPtG~~~-~ 159 (354)
T PRK06358 116 EIEYAE--------------LTE-ETNF--AAN---------EIVLEEIK-------EEIDLVFLCNP--NNPTGQLI-S 159 (354)
T ss_pred eeEEEe--------------Ccc-ccCC--Ccc---------HHHHHhhc-------cCCCEEEEeCC--CCCCCCcc-C
Confidence 011111 000 0000 000 01112221 11122356677 45556644 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccC-CCccchheeEeC-HHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~-~~i~~~~~ 712 (719)
.+-+++|.++|++||+++|.||+...|-..+... ......-.+.++ +|+|.+| .| +-+|.+++. +.+.+.+.
T Consensus 160 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~ 237 (354)
T PRK06358 160 KEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLL 237 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHH
Confidence 8889999999999999999999998774333211 111122223444 7999999 88 799999874 67766654
No 311
>PRK09265 aminotransferase AlaT; Validated
Probab=97.36 E-value=0.015 Score=65.06 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc--ee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD--Iv---tlgK~Lg-g 693 (719)
+.+++-| +.-.|.+. +.+-+++|.++|++||+++|.||+...|-..+.. .... ...+| ++ +|+|.+| .
T Consensus 171 ~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 171 AIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIA--SLAPDLLCVTFNGLSKAYRVA 245 (404)
T ss_pred EEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHH--HcCCCceEEEEecchhhccCc
Confidence 3445556 45567655 6788999999999999999999999876322321 1111 12233 22 5799995 4
Q ss_pred CccchheeEe
Q 005009 694 GVIPLAATLA 703 (719)
Q Consensus 694 G~~Plsavl~ 703 (719)
| +-+|.+++
T Consensus 246 G-lRiG~~v~ 254 (404)
T PRK09265 246 G-FRVGWMVL 254 (404)
T ss_pred c-cceEEEEE
Confidence 7 67888885
No 312
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=97.36 E-value=0.0063 Score=66.91 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=62.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccc--cCCC-cc-ee--eehhcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGCV-PD-IA--CYGKLL 691 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~--~gv~-PD-Iv--tlgK~L 691 (719)
++.+|++... +.-.|.+. +.+-+++|.++|++||+++|.||++..|.-.|.... .+. .+.. +. |+ +|+|.+
T Consensus 148 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 4567777654 66667665 578899999999999999999999987643343221 111 0111 12 32 699998
Q ss_pred C-CCccchheeEeCHHHHhhhc
Q 005009 692 T-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~~ 712 (719)
| .| +=+|.+++++++.+.+.
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~ 246 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELL 246 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHH
Confidence 5 45 56777899999887664
No 313
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=97.36 E-value=0.0026 Score=66.36 Aligned_cols=180 Identities=15% Similarity=0.137 Sum_probs=122.5
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
..++..++-+.|++++| ++.+.+++..-||-.++|... .++.+.|+.++.-|=.|
T Consensus 59 ~kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal----------------------~~~gd~vV~D~~aHYtt 113 (382)
T COG1103 59 TKPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL----------------------CKEGDWVVVDSLAHYTT 113 (382)
T ss_pred cCCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh----------------------ccCCCEEEEcCcchHHH
Confidence 35677888899999998 689999999999988776654 23457899999999877
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.-+.--.|...+ ..|.. .+|+.. -..+.|
T Consensus 114 yvAAEragl~v~----------------eVp~t---------g~Pey~--------------------------i~~e~y 142 (382)
T COG1103 114 YVAAERAGLNVA----------------EVPNT---------GYPEYK--------------------------ITPEGY 142 (382)
T ss_pred HHHHHhcCCeEE----------------ecCCC---------CCCceE--------------------------ecHHHH
Confidence 766554432110 11111 112111 011344
Q ss_pred HHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 601 SSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++..+ ++++.++ |++.-| -|+-|.+.. .+++.++|+++|++|++.=..| .||.- . ..-.
T Consensus 143 ~~viee~~~-----~~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp---v-s~ke 206 (382)
T COG1103 143 AEVIEEVKD-----EGGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP---V-SGKE 206 (382)
T ss_pred HHHHHHHHh-----ccCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc---c-cccc
Confidence 566776666 3445555 555555 588887776 7899999999999999998887 45532 2 2234
Q ss_pred CCcceeeeh--hccCCCccchheeEeCHHHHhhhcC
Q 005009 680 CVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 680 v~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+.+|.++=+ |+++.. .|+|.+.++++..+....
T Consensus 207 ~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r 241 (382)
T COG1103 207 IGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLR 241 (382)
T ss_pred cCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHh
Confidence 789988754 888765 599999999998886543
No 314
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.35 E-value=0.009 Score=67.56 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=48.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHH---hhc-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-C---
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLY---RPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-L--- 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla---~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~--- 291 (719)
.+|+|||.++|-.. . +.....++. +.+ -..++||++...| ..++...+.+. ..+++.|+|+|+.. .
T Consensus 182 ~~DvVIIDTaGr~~--~-d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ--I-DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccc--c-CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCcccc
Confidence 49999999999533 2 222233332 222 2347999997644 33333333333 34678999999983 2
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 005009 292 VNEVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgl 310 (719)
.....+...+ ++|+..+
T Consensus 256 G~~lsi~~~~--~~PI~fi 272 (428)
T TIGR00959 256 GAALSVRSVT--GKPIKFI 272 (428)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344445555 8998664
No 315
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=97.34 E-value=0.0027 Score=71.37 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=53.2
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+..+|++|-. ..-.|.+.. +++|.++|++||+++|+||++..-... ..+ ..-.|+++ ..|.++| |-
T Consensus 145 ~tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~-~pl-----~~gaDivv~S~tK~l~g~~~ 213 (405)
T PRK08776 145 SPKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ-KPL-----EFGADLVLHSTTKYINGHSD 213 (405)
T ss_pred CCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc-----cccCCEEEecCceeecCCCC
Confidence 4567777754 556676655 899999999999999999999632111 111 12358774 5698875 21
Q ss_pred cchheeEe-CHHHHhhh
Q 005009 696 IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~ 711 (719)
.-.|++++ ++++.+.+
T Consensus 214 ~~~G~vv~~~~~l~~~l 230 (405)
T PRK08776 214 VVGGAVVARDAELHQQL 230 (405)
T ss_pred ceEEEEEeCCHHHHHHH
Confidence 34555656 46666544
No 316
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.33 E-value=0.0031 Score=66.54 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=53.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~~~ 295 (719)
+||+|||-+.|++.+... .. .+..-+ -||+|.....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~~---~~--~l~~AD-~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGGF---AA--PLQYAD-YALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCcc---cc--hhhhCc-EEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 499999999654432210 01 111111 367777776666666555555544 3456789999999632 23
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 005009 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (719)
Q Consensus 296 ~l~~~~~~-~~pvlg-lP~~~~~~ 317 (719)
.++++.+. +.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 33444433 789999 88765543
No 317
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.31 E-value=0.0023 Score=72.53 Aligned_cols=152 Identities=15% Similarity=0.108 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++...+|+++|+++.+. ..++.++||..|+..++...+ +.| ..||+....|.|..
T Consensus 59 ~nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all-----~~G----------------D~VI~~~~~Y~~T~ 114 (432)
T PRK06702 59 GNPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNIC-----SSG----------------DHLLCSSTVYGGTF 114 (432)
T ss_pred CCcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhc-----CCC----------------CEEEECCCchHHHH
Confidence 367788999999998774 468889999999999997552 222 36888888887732
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.. +... .. ..|. + + .|-|. ..|
T Consensus 115 ~~-~~~~-l~------------~~Gi--~---v-------------------------~~vd~------~~d-------- 136 (432)
T PRK06702 115 NL-FGVS-LR------------KLGI--D---V-------------------------TFFNP------NLT-------- 136 (432)
T ss_pred HH-HHHH-HH------------HCCC--E---E-------------------------EEECC------CCC--------
Confidence 21 1100 00 0000 0 0 01110 000
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.++++|. .+..+|++|.. ..-.+.+.. +++|.++|++||+++|+|++.. ....++-+..
T Consensus 137 ~~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~ 197 (432)
T PRK06702 137 ADEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEH 197 (432)
T ss_pred HHHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhc
Confidence 245666664 24568889975 333344444 9999999999999999999962 3344443444
Q ss_pred Cccee--eehhccCC
Q 005009 681 VPDIA--CYGKLLTG 693 (719)
Q Consensus 681 ~PDIv--tlgK~Lgg 693 (719)
-.||+ .+.|-++|
T Consensus 198 GADIvv~S~TKy~~G 212 (432)
T PRK06702 198 GANIIVHSTTKYIDG 212 (432)
T ss_pred CCCEEEEccccccCC
Confidence 57887 57898886
No 318
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0091 Score=66.95 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=122.9
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCCChHHHHHHHHHHhccCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~-~~~~~~~~~~~~~~Lae~L~~~~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
++.+.+|+.+.+.... +.+.....-+....+++++.+..+-.. .+.|+.++.++||.-.|+.... ..|
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-----~pG---- 113 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-----NPG---- 113 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-----CCC----
Confidence 7789999999888753 322233445566677777776544111 1349999999999999988772 111
Q ss_pred ccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-----chhh
Q 005009 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-----EWLY 569 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-----~~~~ 569 (719)
..||..+-+|=..... +.+.|. ..+++| +.|
T Consensus 114 ------------DeVlip~P~Y~~y~~~-~~~~gg------------------------------~~v~v~l~~~~~~f- 149 (393)
T COG0436 114 ------------DEVLIPDPGYPSYEAA-VKLAGG------------------------------KPVPVPLDEEENGF- 149 (393)
T ss_pred ------------CEEEEeCCCCcCHHHH-HHhcCC------------------------------EEEEEeCCcCccCC-
Confidence 2477776666442222 111111 111111 011
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEEccccccCCccccCCHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVK 648 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~i-AAvIvEPViqg~gG~~~pp~~fl~~Lr~ 648 (719)
..| .+.|++.+. + ++ +.++.-|- .-. |.+ .+++.+++|.+
T Consensus 150 --------------------~~d--------~~~l~~~i~-------~-ktk~i~ln~P~-NPT-Gav-~~~~~l~~i~~ 190 (393)
T COG0436 150 --------------------KPD--------LEDLEAAIT-------P-KTKAIILNSPN-NPT-GAV-YSKEELKAIVE 190 (393)
T ss_pred --------------------cCC--------HHHHHhhcC-------c-cceEEEEeCCC-CCc-CcC-CCHHHHHHHHH
Confidence 011 355666664 2 34 44445674 443 443 48999999999
Q ss_pred HHHhcCCcEEEeccccCccccCccccccccCCCc--c-ee---eehhccC-CCccchheeEeC-HHHHhhhc
Q 005009 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--D-IA---CYGKLLT-GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 649 Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P--D-Iv---tlgK~Lg-gG~~Plsavl~~-~~i~~~~~ 712 (719)
+|++||+.+|.|||..+|--.|..+.+ -..+.+ | .+ .|||..+ .| .=+|.+++. +++.+.+.
T Consensus 191 ~a~~~~i~ii~DEiY~~l~yd~~~~~s-~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~ 260 (393)
T COG0436 191 LAREHDIIIISDEIYEELVYDGAEHPS-ILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALR 260 (393)
T ss_pred HHHHcCeEEEEehhhhhcccCCCCcCC-HhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHH
Confidence 999999999999999999777741111 111223 3 22 5899997 46 577779988 77776653
No 319
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=97.26 E-value=0.01 Score=64.86 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-ccccccccC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLG 679 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~~~a~e~~g 679 (719)
.+.||+.+.+ ...-.-+++-| +.-+|- +...+.|++|.+||.|||+.+|.||||.=+=-.| +.+.+..
T Consensus 147 ~~~LE~~~~~------~~vkl~iLCnP--HNP~Gr-vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~-- 215 (388)
T COG1168 147 FDALEKAFVD------ERVKLFILCNP--HNPTGR-VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS-- 215 (388)
T ss_pred HHHHHHHHhc------CCccEEEEeCC--CCCCCc-cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhh--
Confidence 4678888863 22346777888 455553 5589999999999999999999999999774555 3333322
Q ss_pred CCcc-----eeee--hhccC-CCccchheeEeCHHH
Q 005009 680 CVPD-----IACY--GKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 680 v~PD-----Ivtl--gK~Lg-gG~~Plsavl~~~~i 707 (719)
+.|+ |+|+ +|+.. .| +-.|.++.+.+-
T Consensus 216 ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~ 250 (388)
T COG1168 216 LSERFADNSITLTSASKTFNLAG-LKCAYIIISNRE 250 (388)
T ss_pred cChhhhcceEEEeeccccccchh-hhheeEEecCHH
Confidence 3333 3344 68875 56 566666655443
No 320
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=97.25 E-value=0.006 Score=67.79 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=55.3
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee--eehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv--tlgK~Lg-gG~ 695 (719)
+.+|++... +.-.|.+.+ .++++++++.. +++|+||++..|...+.... ...-.+. |+ +|+|.+| .|
T Consensus 176 ~~~v~l~~P-~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~--~~~~~~~viv~~SfSK~~glaG- 246 (380)
T PLN03026 176 PKLLFLTSP-NNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRMK--WVKKYDNLIVLRTFSKRAGLAG- 246 (380)
T ss_pred CcEEEEeCC-CCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchHH--HHHhCCCEEEEecchHhhcCcc-
Confidence 445555543 666787776 56666777654 99999999987743222211 1111233 33 7999998 78
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++.+.+.
T Consensus 247 lRiGy~~~~~~~i~~l~ 263 (380)
T PLN03026 247 LRVGYGAFPLSIIEYLW 263 (380)
T ss_pred ccceeeecCHHHHHHHH
Confidence 68888999999988764
No 321
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=97.25 E-value=0.0043 Score=68.69 Aligned_cols=211 Identities=8% Similarity=0.026 Sum_probs=121.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
..+|+..+. +.+|. +|++++++.+.+..... +...-..+|-+.|++..+-. -+.++++++++|+...+++
T Consensus 30 ~~i~l~~ne--n~~~~--~~~v~~a~~~~~~~~~~-----Yp~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASNE--NPFGC--SPRVLDELQKSWLDHAL-----YPDGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCCC--CCCCC--CHHHHHHHHHHHHhcCc-----CCCCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 677876643 34555 58999999887654322 11222345666777665533 3689999999999988887
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +.| ..|+..+-+|.+-...+ ...| .
T Consensus 100 ~l~-----~~g----------------d~vlv~~P~y~~~~~~~-~~~g------------------------------~ 127 (366)
T PRK01533 100 AVL-----KAG----------------DNIVTAGATFPQYRHHA-IIEG------------------------------C 127 (366)
T ss_pred Hhc-----CCC----------------CEEEEcCCcHHHHHHHH-HHcC------------------------------C
Confidence 651 111 25777766665532211 1111 1
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+++|. ++ . .-| .+.+++.+.+ ..-+.+|.-| +.-.|.+. +
T Consensus 128 ~v~~v~~--------------~~--~----~~d--------~~~l~~~~~~-------~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 128 EVKEVAL--------------NN--G----VYD--------LDEISSVVDN-------DTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred EEEEeec--------------CC--C----CcC--------HHHHHHHhCc-------CCcEEEEeCC--CCCCCCCc-C
Confidence 1111110 00 0 000 2455555531 1223445566 56667766 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+-+++|.++|++++ ++|+||+...|-.-+..- ......-.+.++ +|+|.+| .| +-+|.+++.+++.+.+.
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~ 245 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLN 245 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHH
Confidence 677888888898876 577899997663222110 111111123333 7999998 78 68888999999988774
No 322
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.24 E-value=0.0036 Score=64.19 Aligned_cols=63 Identities=24% Similarity=0.079 Sum_probs=47.9
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCC----CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRL----PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~----pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
||+|||.+. |. .....+-+...+.. -+|+|+.....++.++...++.++..|.++.|+|+|++
T Consensus 114 yD~IIiD~p-----p~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~ 180 (217)
T cd02035 114 YDVIVFDTA-----PT-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRV 180 (217)
T ss_pred CCEEEECCC-----Cc-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 999999983 22 11111222333332 48999999999999999999999999999999999987
No 323
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=97.24 E-value=0.0046 Score=70.23 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeCChH-HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs-EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.....+|.+.+++.+|-.....++++++|+ .|+..|+..+ |.. + ++...||.-..+ |=++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~al-r~~-~----------------~~gd~VI~p~~t-h~S~ 164 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSAL-RHK-R----------------PKAKYVIWPRID-QKSC 164 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHc-CCc-C----------------CCCCEEEEECcC-hHHH
Confidence 344557777777777742233689999999 6888777766 321 0 111345555555 7767
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.-++.+.|... .++++ ...++.| + -|
T Consensus 165 ~kAi~~~G~~p--------------v~Vd~-----------~~d~~~~------------~---------iD-------- 190 (444)
T TIGR03531 165 IKAISTAGFEP--------------RVIET-----------VLDGDEL------------T---------TD-------- 190 (444)
T ss_pred HHHHHHcCCeE--------------EEeee-----------eecCcCC------------C---------cC--------
Confidence 76666665310 00000 0001111 0 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc---cc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DL 677 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~---e~ 677 (719)
.+.|++.|.+ ..+..+++|+..|- .+..|...+ +++|.++|++||+.+|+|+++. ++- ..+.. ..
T Consensus 191 ~e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg-~~~--~~~~~~~~~g 258 (444)
T TIGR03531 191 VEDIERAIEE----IGPDNILCVLSTTS-CFAPRSPDD----IEEIAKICANYDIPHIVNNAYG-LQS--NKYMELINKA 258 (444)
T ss_pred HHHHHHHHHh----ccCCCEEEEEEcCC-cCCCcchhC----HHHHHHHHHHcCCEEEEECcCc-CcC--hhhhhhhhcc
Confidence 3567778763 22367888888874 444444444 9999999999999999999995 311 11110 11
Q ss_pred cCC-Ccceeee--hhccCCCccchheeEe-CHHHHhhhc
Q 005009 678 LGC-VPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 678 ~gv-~PDIvtl--gK~LggG~~Plsavl~-~~~i~~~~~ 712 (719)
+.+ ..|++++ .|.+... ..-|++++ .+++++.+.
T Consensus 259 ~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~ 296 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEIS 296 (444)
T ss_pred ccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHH
Confidence 112 3587764 5776531 01244556 566666553
No 324
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=97.23 E-value=0.02 Score=63.81 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=52.2
Q ss_pred EEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc--ee---eehhcc-CC
Q 005009 621 GALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--IA---CYGKLL-TG 693 (719)
Q Consensus 621 AAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD--Iv---tlgK~L-gg 693 (719)
.++++ -| +.-.|.. .+.+-+++|.++|+++|+++|+||+...|-..|..+. ....+.|+ ++ +|||.. ..
T Consensus 170 ~~v~~~~p--~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 170 AALIVNNP--SNPCGSV-FSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred eEEEEcCC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCc
Confidence 34444 45 4445654 4788899999999999999999999988754443211 11122333 33 789984 34
Q ss_pred CccchheeEeC
Q 005009 694 GVIPLAATLAT 704 (719)
Q Consensus 694 G~~Plsavl~~ 704 (719)
| +=+|.+++.
T Consensus 246 G-lRiG~iv~~ 255 (401)
T TIGR01264 246 G-WRLGWIIIH 255 (401)
T ss_pred c-ceEEEEEec
Confidence 6 577778876
No 325
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.23 E-value=0.0038 Score=65.53 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++|.|.| -.||||||+|..|+.+|. ++|+||...=
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 56788886 899999999999999994 7899998765
No 326
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=97.23 E-value=0.0052 Score=66.83 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=62.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..+++-|- .=.|... +.+-+++|.++|+++|+++|.||+...+........ +.-.+.++ +|||.+| .| +
T Consensus 127 ~v~l~nP~--NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~---~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNPN--NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAA---CAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCCc--CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccc---cccCCCEEEEeeccccccCCC-c
Confidence 46788884 4446654 677799999999999999999999976632122222 11123433 7999998 78 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
=+|.+++.+++.+.+..
T Consensus 200 RiG~~v~~~~l~~~~~~ 216 (330)
T PRK05664 200 RLGFVLAEPALLRALAE 216 (330)
T ss_pred ceEEEEeCHHHHHHHHH
Confidence 88999999999887753
No 327
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=97.22 E-value=0.0061 Score=66.45 Aligned_cols=82 Identities=15% Similarity=0.298 Sum_probs=53.4
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhc-CCcEEEeccccCccccCccccccccCCCc-cee--eehhccC-CCc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGV 695 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~-gilLI~DEVqTGfGRtG~~~a~e~~gv~P-DIv--tlgK~Lg-gG~ 695 (719)
..++.-| +.-.|.+.+ .++++++|+++ ++++|+||++..|+. ... .......+ .++ +++|.+| .|
T Consensus 147 ~v~~~~P--~NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~--~~~-~~~~~~~~~~i~~~S~SK~~~~~G- 216 (353)
T PRK05387 147 GIIFPNP--NAPTGIALP----LAEIERILAANPDSVVVIDEAYVDFGG--ESA-IPLIDRYPNLLVVQTFSKSRSLAG- 216 (353)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCC--cch-HHHHhhCCCEEEEEehhHhhcchh-
Confidence 3467777 455677765 45555556554 999999999976742 111 01111122 344 6899998 67
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++.+.+.
T Consensus 217 lR~G~~~~~~~~~~~l~ 233 (353)
T PRK05387 217 LRVGFAIGHPELIEALN 233 (353)
T ss_pred hhceeeecCHHHHHHHH
Confidence 57888999999888764
No 328
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.003 Score=66.79 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
++.||+.+..-....+......|.+|-- +..-|-.+.|-+|+.++.+||++||+.|-+|-.-- |=+.-..||
T Consensus 136 ledIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-------~NAavasgV 207 (384)
T KOG1368|consen 136 LEDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-------FNAAVASGV 207 (384)
T ss_pred HHHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-------hhHHHHcCC
Confidence 4677777763110112223467888976 55445456689999999999999999999885331 222223333
Q ss_pred -------Ccce--eeehhccCCCccch-heeEeCHHHHhh
Q 005009 681 -------VPDI--ACYGKLLTGGVIPL-AATLATNAVFDS 710 (719)
Q Consensus 681 -------~PDI--vtlgK~LggG~~Pl-savl~~~~i~~~ 710 (719)
.-|- +||+||||. |+ |.+++++++.+.
T Consensus 208 ~vk~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 208 PVKKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDK 244 (384)
T ss_pred CHHHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHH
Confidence 3454 599999985 33 567778777653
No 329
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=97.21 E-value=0.0041 Score=67.68 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=62.8
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
+.+|.-| +.=.|... +.+-+++|.++|++||+++|.||+..-|.-.+..-......-.+.++ +|+|.+| .| +
T Consensus 125 ~v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 200 (332)
T PRK06425 125 LIFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-L 200 (332)
T ss_pred EEEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCch-h
Confidence 4456678 45556654 78889999999999999999999998773222111111111123444 7999999 88 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
-+|.+++.+++.+.+..
T Consensus 201 RiGy~v~~~~li~~l~~ 217 (332)
T PRK06425 201 RIGYIATDDYNMKISRK 217 (332)
T ss_pred hheeeecCHHHHHHHHH
Confidence 89999999999887754
No 330
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=97.21 E-value=0.0031 Score=70.45 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=103.8
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.++.++||--|+-+++...+ +.| ..||.....|+|
T Consensus 51 R~gnPt~~~le~~la~Le~g---~~a~~~~SGmaAi~~~l~~ll-----~~G----------------d~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGG---EDALLFSSGMAAISAALLALL-----KPG----------------DHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS------TT----------------BEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhcc---cceeeccchHHHHHHHHHhhc-----ccC----------------CceEecCCccCc
Confidence 45688889999999998763 678999999998888877552 112 369999999998
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.... +.-. ...++. . +.|-|.. +
T Consensus 107 t~~~-~~~~-------------l~~~gv-------------~-----------------v~~~d~~-------d------ 129 (386)
T PF01053_consen 107 TYRL-LEEL-------------LPRFGV-------------E-----------------VTFVDPT-------D------ 129 (386)
T ss_dssp HHHH-HHHC-------------HHHTTS-------------E-----------------EEEESTT-------S------
T ss_pred chhh-hhhh-------------hcccCc-------------E-----------------EEEeCch-------h------
Confidence 3211 1100 000000 0 0112210 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC-CcEEEeccccCccccCccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g-ilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.++ .++.+|++|+. ..--.-+.. ++++.++|+++| +++|+|..... + +.++-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at----p--~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT----P--YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH----T--TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccc----e--eeecc
Confidence 356777775 38899999996 444444444 899999999999 99999999842 1 23333
Q ss_pred cCCCcceee--ehhccCC-CccchheeEeCH--HHHhhh
Q 005009 678 LGCVPDIAC--YGKLLTG-GVIPLAATLATN--AVFDSF 711 (719)
Q Consensus 678 ~gv~PDIvt--lgK~Lgg-G~~Plsavl~~~--~i~~~~ 711 (719)
+..-.||++ +.|-++| |=.=.|+++++. ++++.+
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l 227 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRL 227 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhh
Confidence 333479885 6899975 323345566553 665543
No 331
>PLN02672 methionine S-methyltransferase
Probab=97.20 E-value=0.01 Score=73.71 Aligned_cols=228 Identities=14% Similarity=0.061 Sum_probs=131.9
Q ss_pred EEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCC--CCeEE
Q 005009 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (719)
Q Consensus 388 ~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~--~~rv~ 465 (719)
++++.+|. .+|++..|-. .++ . +|.|.+|+.+.+.+..+. ....+....+++.+.+..+-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE~--d~p-p-Pp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDES--FLP-V-PSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCCC--CCC-C-CHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 46666777 8888877532 344 4 799999999877654331 1234557788888888654321 13678
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
++++..++...++... .. .| ..|+...-+|.+-...+ ...|.
T Consensus 759 vt~Gs~elL~lll~aL----l~-pG----------------D~VLVp~PtY~~Y~~~a-~~~Ga---------------- 800 (1082)
T PLN02672 759 YGDTSLALFNKLVLCC----VQ-EG----------------GTLCFPAGSNGTYVSAA-KFLKA---------------- 800 (1082)
T ss_pred EeCCHHHHHHHHHHHH----cC-CC----------------CEEEEeCCChHHHHHHH-HHcCC----------------
Confidence 7777666666665544 11 11 36777777776633221 11111
Q ss_pred cccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv 625 (719)
..+++|-. .++-| .-| .+.+++.+.+ ..+.+.+|.
T Consensus 801 --------------~vv~Vpl~---------------~e~gf--~lD--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 801 --------------NFRRIPTK---------------SSDGF--KLT--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred --------------EEEEEecc---------------cccCC--CCC--------HHHHHHHhcc------CCCCEEEEE
Confidence 11111100 00000 001 2456666642 123357777
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc---ccc----cc-CCCc--cee---eehhccC
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TAD----LL-GCVP--DIA---CYGKLLT 692 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~---a~e----~~-gv~P--DIv---tlgK~Lg 692 (719)
-|- +.=.|.+ .+.+-+++|.++|++||+++|.||+..++--.|..+ .+. .+ ...+ .++ +|+|..+
T Consensus 836 nPn-hNPTG~v-~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGLL-YSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCcc-CCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 884 3445654 488999999999999999999999998764444321 110 11 1112 232 6898887
Q ss_pred -CCccchheeEeCH-HHHhhhc
Q 005009 693 -GGVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~-~i~~~~~ 712 (719)
.| +-+|.+++.+ ++.+.+.
T Consensus 914 lpG-LRIGylIap~~eLi~~l~ 934 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFH 934 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHH
Confidence 47 7888899864 4777664
No 332
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0044 Score=65.19 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=64.6
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCC--CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC--------
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH-------- 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~-------- 289 (719)
.-|++||.+ -|.++ .-.+.+.+.+.. =+|+|...+.=++..+.-.+...+..+++|+|+|-|-.
T Consensus 156 ~lDyLviDt-----PPGts-Dehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~ 229 (300)
T KOG3022|consen 156 ELDYLVIDT-----PPGTS-DEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCG 229 (300)
T ss_pred CcCEEEEeC-----CCCCC-hhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCC
Confidence 489999998 33322 223333333332 26899998888999999999999999999999999974
Q ss_pred ------CCCCHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 290 ------GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 290 ------~~~~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
+....+.+.+.+ ++|+|| ||-.+.+
T Consensus 230 ~~~~iF~~gGg~~l~~~~--glp~Lg~iPld~~i 261 (300)
T KOG3022|consen 230 HSTNIFGSGGGERLAEEL--GLPLLGSLPLDPLI 261 (300)
T ss_pred CcceeccCccHHHHHHHc--CCCeEeecCCCHHH
Confidence 123346666666 999999 9987753
No 333
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.19 E-value=0.042 Score=62.06 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=61.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcC----CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-C--
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-V-- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~----~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~-- 292 (719)
.+|+|||.++|.. +. +...+.++.+..+ ..++||.+...|-- +....+.+.+ .+.+-|+|+++... .
T Consensus 182 ~~DvViIDTaGr~--~~-d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~-~~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRH--KQ-EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKD-SVDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCC--cc-hHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHh-ccCCcEEEEECccCCCCc
Confidence 4999999999942 22 2234444444322 23899999766521 1222244432 35789999999832 1
Q ss_pred -CHHHHHHhhcCCCcEEecCCCCC------CCcchhhhhhhhchhhhhhHHHHHHHHH
Q 005009 293 -NEVPLMSYLRNRVPVLVLPPLPQ------DSSNDLMEWFDESHNVFDSLKNIMLLAY 343 (719)
Q Consensus 293 -~~~~l~~~~~~~~pvlglP~~~~------~~~~~~~~~l~~~~~~v~~Ll~~l~~~~ 343 (719)
..-.+...+ ++|+..|..-+. ++...+...+ .....+.+|++.+....
T Consensus 256 G~aLs~~~~t--~~PI~fig~Ge~v~Dle~f~p~~~~~ri-lgmgDi~~L~ek~~~~~ 310 (429)
T TIGR01425 256 GGALSAVAAT--KSPIIFIGTGEHIDDFEIFKTQPFISKL-LGMGDIEGLIDKVQDLK 310 (429)
T ss_pred cHHhhhHHHH--CCCeEEEcCCCChhhcCcCChHHHHHHH-hcCCCcHHHHHHHHHhh
Confidence 233344455 899876544322 2222222222 12244666666655543
No 334
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=97.19 E-value=0.0047 Score=69.98 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
+.|++.|.+ .+..+++.+.+| ++ ...|| .+.|...+++++++|++||+.||.|=.+.
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itv-n~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra 221 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTV-NLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC 221 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEec-ccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch
Confidence 567777764 234555555555 43 44455 45577899999999999999999999885
No 335
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=97.18 E-value=0.019 Score=64.22 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=52.3
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee---eehhccC-CCc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv---tlgK~Lg-gG~ 695 (719)
+.++.-| +.-.|.. .+.+-+++|.++|+++|+++|.||++..|-..+. +.....+.-.+.++ +|+|..+ .|
T Consensus 172 ~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG- 247 (403)
T TIGR01265 172 AIVVINP--SNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG- 247 (403)
T ss_pred EEEEecC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCc-
Confidence 4455556 3445654 4677789999999999999999999987754443 22222221112344 6899954 46
Q ss_pred cchheeEeC
Q 005009 696 IPLAATLAT 704 (719)
Q Consensus 696 ~Plsavl~~ 704 (719)
+=+|.+++.
T Consensus 248 lRiG~~v~~ 256 (403)
T TIGR01265 248 WRLGWIIIH 256 (403)
T ss_pred ceEEEEEEe
Confidence 677878773
No 336
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.15 E-value=0.0055 Score=74.87 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g 522 (719)
+...+|.+.|++++|-+ .-.++.++|+.|.-+++..+ |.|+..+|. . +..++....+-||+--.
T Consensus 530 q~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge------------~-~R~~vlip~saHgtnPa 593 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGE------------N-HRNICLIPVSAHGTNPA 593 (939)
T ss_pred HHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCC------------C-CCCEEEEEccccCcCHH
Confidence 45678999999999842 24467788888887788888 777765543 2 34677788889997655
Q ss_pred cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHH
Q 005009 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (719)
Q Consensus 523 alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (719)
+....|.. ...++... -... | .+
T Consensus 594 sa~~~G~~----------------------------Vv~V~~d~-------------~G~i--------D--------le 616 (939)
T TIGR00461 594 SAAMAGMQ----------------------------VVPVNCDQ-------------DGNI--------D--------LV 616 (939)
T ss_pred HHHHCCCE----------------------------EEEeccCC-------------CCCc--------C--------HH
Confidence 43333211 01111100 0000 1 35
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC-ccccCccccccccCCC
Q 005009 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCV 681 (719)
Q Consensus 603 ~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG-fGRtG~~~a~e~~gv~ 681 (719)
.|++.+++ .++++++|++--. .. -|.+.++ ++++.++|+++|..+++|=+|.. .+ +. . .--...
T Consensus 617 ~L~~~i~~-----~~~~taaV~iT~p-st-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~l--~-~Pg~~G 681 (939)
T TIGR00461 617 DLKNKAEQ-----HGDELAAVMVTYP-ST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--GL--T-SPGDLG 681 (939)
T ss_pred HHHHHHhh-----cCCceEEEEEEeC-Cc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--CC--C-CccccC
Confidence 67777763 3467888877532 22 3555433 89999999999999999999963 21 11 1 111234
Q ss_pred cceeee--hhccC-----CCccchheeEeCHHHHhhh
Q 005009 682 PDIACY--GKLLT-----GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 682 PDIvtl--gK~Lg-----gG~~Plsavl~~~~i~~~~ 711 (719)
.|++++ .|.++ || -=+|.+.+++++...+
T Consensus 682 aDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~l 717 (939)
T TIGR00461 682 ADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFL 717 (939)
T ss_pred CCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhc
Confidence 799987 59887 55 3356777777655444
No 337
>PRK05839 hypothetical protein; Provisional
Probab=97.14 E-value=0.021 Score=63.25 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=59.5
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc----CC--Cccee---eehhcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----GC--VPDIA---CYGKLL 691 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~----gv--~PDIv---tlgK~L 691 (719)
+.+|.-| +.=.|.+. +.+.+++|.++|++||+++|.||+...|...+.....-.. +. .+.++ +|+|.+
T Consensus 158 ~v~i~nP--~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~ 234 (374)
T PRK05839 158 LVILNSP--NNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS 234 (374)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc
Confidence 4455667 45456655 6888999999999999999999999776322222111110 00 12333 699986
Q ss_pred C-CCccchheeEeCHHHHhhhc
Q 005009 692 T-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~~ 712 (719)
+ .| +-+|.+++++++.+.+.
T Consensus 235 ~~~G-lRiG~ii~~~~~~~~~~ 255 (374)
T PRK05839 235 SAPG-LRSGFIAGDASILKKYK 255 (374)
T ss_pred CCcc-ceeEEEecCHHHHHHHH
Confidence 5 57 78999999999888763
No 338
>PLN03032 serine decarboxylase; Provisional
Probab=97.13 E-value=0.012 Score=65.47 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC-----cEEEeccccCccccCcccc-c
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT-A 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi-----lLI~DEVqTGfGRtG~~~a-~ 675 (719)
+.|++.|.+ ...+..+|++--. ..+-|.+-| +++|.++|++||+ .|.+|=+|.|+ .. .+.. .
T Consensus 149 ~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~-p~~~~~ 216 (374)
T PLN03032 149 DDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MM-PFVSRA 216 (374)
T ss_pred HHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hh-hccCCC
Confidence 567777763 1224445555443 566788888 9999999999975 79999999763 11 1100 0
Q ss_pred c--ccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 676 D--LLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 676 e--~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
. .+....|.++++ |-+|.- .+.|+++++++..+.+.
T Consensus 217 ~~~~~~~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~~ 256 (374)
T PLN03032 217 PEVTFRKPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKALS 256 (374)
T ss_pred cccCCCcCCcEEEECcccccCCC-cCeEEEEEEchhhHhhc
Confidence 0 111247877653 544334 57889999988876654
No 339
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=97.11 E-value=0.019 Score=60.89 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
++.++....+.++... +|++|+....|+.-+ ........ --+|+|....--++..++.++
T Consensus 97 ~~~~~~~~~~~~l~~~-------------~D~iliD~~aGl~~~------~~~~~~~s-d~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 97 LDPEDLEDVIKELEEL-------------YDYILIDTGAGLSRD------TLSFILSS-DELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred cCHHHHHHHHHHHHhc-------------CCEEEEeCCCCccHH------HHHHHHhc-CcEEEEeCCCcchHHHHHHHH
Confidence 5566666666666654 799999996664433 22222222 457788888888999999999
Q ss_pred HHHHhCCCcEEE--EEEccCC--CC---CHHHHHHhhcCCCcEEe-cCCCC
Q 005009 272 ESLKLRGYDVVA--VVFEDHG--LV---NEVPLMSYLRNRVPVLV-LPPLP 314 (719)
Q Consensus 272 ~~l~~~~~~v~g--vi~N~~~--~~---~~~~l~~~~~~~~pvlg-lP~~~ 314 (719)
+.+...+....+ +|+|++. .+ ....+.+... .++.+. +|+.+
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~-~~~~~~~i~~~~ 206 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVK-QVPVLQVIPFDP 206 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHHH-hCCceeEeccCh
Confidence 999999999888 9999993 22 2333333333 555666 89888
No 340
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=97.11 E-value=0.0074 Score=74.47 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=110.5
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeC-ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSD-NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~-SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.+...++.+.|+++++ .+.|.|.. +|+.+-++-+.++ +.|.+.+|. . +.++|....+-||.-
T Consensus 567 ~~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi-~~~~~~~Gd------------~-~r~~vli~~~aH~sn 629 (993)
T PLN02414 567 QEMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVI-RAYHLSRGD------------H-HRNVCIIPVSAHGTN 629 (993)
T ss_pred HHHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHH-HHHHhccCC------------C-CCCEEEeCCCcCccC
Confidence 3446688899999988 47787775 4555444444444 666544332 1 235677778889976
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..++...|.. ...++.... ... |
T Consensus 630 ~a~a~~~G~~----------------------------vv~v~~d~~-------------G~v--------D-------- 652 (993)
T PLN02414 630 PASAAMCGMK----------------------------IVVVGTDAK-------------GNI--------N-------- 652 (993)
T ss_pred HHHHHHCCCE----------------------------EEEeccCCC-------------CCc--------C--------
Confidence 6555443211 011111100 000 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.|++.+.. +.+++++|++-=. ...||...+ ++++.++|+++|+++++|=+|.- +-.|. ..-...
T Consensus 653 le~L~~~i~~-----~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~-a~~~l---~~p~~~ 718 (993)
T PLN02414 653 IEELRKAAEA-----HKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANMN-AQVGL---TSPGFI 718 (993)
T ss_pred HHHHHHHHhc-----cCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCHH-hccCc---CCcccc
Confidence 3567777762 3457888877654 577888877 99999999999999999999951 11111 111123
Q ss_pred Ccceeee--hhccC----CCccchheeEeCHHHHhhhc
Q 005009 681 VPDIACY--GKLLT----GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDIvtl--gK~Lg----gG~~Plsavl~~~~i~~~~~ 712 (719)
-.|++++ .|.++ +|=--+|.+.+++++...+-
T Consensus 719 GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lP 756 (993)
T PLN02414 719 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 756 (993)
T ss_pred CCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCC
Confidence 4698876 68665 23123777888887776553
No 341
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.023 Score=63.36 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.|.|. +|||||++.+.|+..|. ++|++|+.+-
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 3467999999 99999999999999984 7788988655
No 342
>PLN02187 rooty/superroot1
Probab=97.10 E-value=0.014 Score=66.88 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=55.5
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhcc-C
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-T 692 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~L-g 692 (719)
...+.+|.-|- .-.|.+. +.+-+++|.++|++||+++|.||+...|--.|..+ ....+.-...++ +|+|.. -
T Consensus 204 ~~~~v~i~nP~--NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 204 NTVAMVVINPN--NPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred CcEEEEEeCCC--CCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 35677888883 4446544 78899999999999999999999998752223222 111121111233 689995 4
Q ss_pred CCccchheeEeC
Q 005009 693 GGVIPLAATLAT 704 (719)
Q Consensus 693 gG~~Plsavl~~ 704 (719)
.| +-+|.+++.
T Consensus 281 pG-lRiG~~v~~ 291 (462)
T PLN02187 281 PG-WKIGWIALN 291 (462)
T ss_pred cc-ceeEEEEec
Confidence 57 688888873
No 343
>PRK06855 aminotransferase; Validated
Probab=97.09 E-value=0.018 Score=65.12 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv 680 (719)
+.+++.+.. .+..-+.++.-|- .=-|. ..+.+.+++|.++|++||+++|.||+...|-..|..+ .. ..+
T Consensus 160 ~~l~~~~~~-----~~~~~~i~l~~P~--NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl--~~~ 229 (433)
T PRK06855 160 DDLENKVKY-----NPSIAGILLINPD--NPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPL--SEV 229 (433)
T ss_pred HHHHHHHhc-----CCCceEEEEECCC--CCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCH--HHH
Confidence 556666642 2233456778884 44455 4478999999999999999999999998773334211 11 112
Q ss_pred Ccc---ee--eehhccC-CCccchheeEe
Q 005009 681 VPD---IA--CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 681 ~PD---Iv--tlgK~Lg-gG~~Plsavl~ 703 (719)
.+| |+ .|+|.++ .| +=+|.+++
T Consensus 230 ~~~~~~I~~~S~SK~~~~pG-lRiG~ii~ 257 (433)
T PRK06855 230 IGDVPGIALKGISKELPWPG-SRCGWIEV 257 (433)
T ss_pred cCcCCeEEEecCccccCCCc-ceEEEEEE
Confidence 232 33 6999997 78 68888886
No 344
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0021 Score=69.83 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=123.3
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
++.+. +++=.+++ -+++..+++. ....++-...|++|++.+=|+ --.+.+.||-.|.-.|+-... +.|
T Consensus 34 sy~F~-d~~haa~l-F~l~~~G~iY-sRi~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la-----~aG- 101 (426)
T COG2873 34 SYVFD-DTDHAAAL-FGLKEPGNIY-TRIMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLA-----GAG- 101 (426)
T ss_pred eeecC-CHHHHHHH-hCCCcCCcee-eeccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhc-----cCC-
Confidence 45555 44433322 2344444432 234577778899999987553 245678899888888877652 112
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
..||+-..-|=| |..-.+.+- +. +|.
T Consensus 102 ---------------D~iVss~~LYGG-T~~lf~~tl----~~---------~Gi------------------------- 127 (426)
T COG2873 102 ---------------DNIVSSSKLYGG-TYNLFSHTL----KR---------LGI------------------------- 127 (426)
T ss_pred ---------------CeeEeeccccCc-hHHHHHHHH----Hh---------cCc-------------------------
Confidence 368888777766 333333220 00 010
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
+++|-|.+ | .+.++++|+ ++..||++|.| ..-++.++. ++++.++|+
T Consensus 128 -----~v~fvd~~-------d--------~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh 174 (426)
T COG2873 128 -----EVRFVDPD-------D--------PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAH 174 (426)
T ss_pred -----EEEEeCCC-------C--------HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHH
Confidence 01122211 0 255677776 47789999997 566677766 899999999
Q ss_pred hcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-CccchheeEeCHHHHhhh
Q 005009 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
+||++||+|-.++. . |-++-+..-.|||+ +.|=+|| | .-||.+++..--+|+-
T Consensus 175 ~~gvpliVDNT~at----p--yl~rP~~hGADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~ 230 (426)
T COG2873 175 RHGVPLIVDNTFAT----P--YLCRPIEHGADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWT 230 (426)
T ss_pred HcCCcEEEecCCCc----c--eecchhhcCCCEEEEeecccccCCc-cccceEEEeCCccccc
Confidence 99999999998852 2 55555556789995 7899988 7 6888888876656543
No 345
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.08 E-value=0.0054 Score=74.37 Aligned_cols=64 Identities=9% Similarity=-0.124 Sum_probs=46.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
.||+|||.+...+. .....-++...+ =||+|+....-....+..+++.++..+.++.|||+|++
T Consensus 655 ~yD~IiID~pp~~~-----~~d~~~l~~~~D-~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~ 718 (754)
T TIGR01005 655 YSDCVVVDVGTADP-----VRDMRAAARLAI-IMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNML 718 (754)
T ss_pred hCCEEEEcCCCcch-----hHHHHHhhhhCC-eEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 39999999954322 122233343333 35688777777788888899999988899999999987
No 346
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=97.07 E-value=0.011 Score=64.66 Aligned_cols=209 Identities=14% Similarity=0.077 Sum_probs=113.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+..+. +.++. .|++++++.+.+....... +......+|-+.|++..+...-+.++++++++++...+++
T Consensus 27 ~~i~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~---Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAME--NPYRL--PAELRAELGERLAEVALNR---YPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCCC--CCCCC--CHHHHHHHHHHhhcccccc---CCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 577765542 34555 4899999998876422211 1112235666777776653211368888877788887776
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
+.. .. ..+|+...-+|.+... .....| .
T Consensus 100 ~~~-----~~----------------gd~vlv~~P~y~~~~~-~~~~~g------------------------------~ 127 (356)
T PRK04870 100 ACA-----KP----------------GATVLAPEPGFVMYRM-SAKLAG------------------------------L 127 (356)
T ss_pred Hhc-----CC----------------CCEEEECCCCHHHHHH-HHHHcC------------------------------C
Confidence 551 11 2357777766665321 111111 1
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCccccC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~~~p 638 (719)
..+++|- ++ + + .-| .+.+++.+.. .++.+|+ .-| +.-.|...+
T Consensus 128 ~~~~i~~--------------~~-~--~--~~d--------~~~l~~~~~~-------~~~~~v~l~~p--~NPtG~~~~ 171 (356)
T PRK04870 128 EFVGVPL--------------TA-D--F--TLD--------LPAMLAAIAE-------HRPALVFLAYP--NNPTGNLFD 171 (356)
T ss_pred EEEEecC--------------CC-C--C--CCC--------HHHHHHHhhc-------CCCCEEEEcCC--CCCCCCCCC
Confidence 1111220 00 0 0 001 2456666642 2333444 446 455677664
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+-++++.++| ++++|+||+...|... .+. . ...-.+.++ +++| .+ .| +.+|.+++++++++.+.
T Consensus 172 -~~~~~~i~~~~---~~~ii~De~y~~~~~~-~~~-~-~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~ 240 (356)
T PRK04870 172 -DADVERIIEAA---PGLVVVDEAYQPFAGD-SWL-P-RLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELD 240 (356)
T ss_pred -HHHHHHHHHHC---CCEEEEECCchhhcCc-chH-H-HHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHH
Confidence 55555555555 8899999999877421 211 1 011112333 6899 54 37 68899999999888775
No 347
>PRK14974 cell division protein FtsY; Provisional
Probab=97.04 E-value=0.016 Score=63.61 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...++++|. +|+|||++++.|+..|. ++|++|+..-
T Consensus 140 ~~vi~~~G~-~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVGV-NGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 457889995 99999999999999994 6788887743
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0099 Score=67.28 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+++.|. ||||||++++.|+..+.+ .+.|.+|+++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~---~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYAL---LYGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH---hcCCCeEEEEE
Confidence 457899999 899999999999988720 14578998886
No 349
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.02 E-value=0.008 Score=63.39 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=52.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~~~ 295 (719)
+||+|||-+.|++..+.. ......-+ -||+|.....-++..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~~-----~~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGGF-----AAPLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCcccccc-----hhhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 499999999766543321 11122222 355666666545554444444433 3467889999999842 12
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 005009 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (719)
Q Consensus 296 ~l~~~~~~-~~pvlg-lP~~~~~~ 317 (719)
.+.+..+. +.|+++ ||..+...
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 23333332 889999 98876654
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.023 Score=65.44 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 13 HRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++.++.++...-.. .+.........+.|+|. +|+|||+++..|+..+. ....|++|.++-
T Consensus 327 ~~~~l~~~L~~~l~v-~~~~~l~~G~vIaLVGP-tGvGKTTtaakLAa~la---~~~~gkkVaLId 387 (559)
T PRK12727 327 GRGLMLGLLSKRLPV-APVDPLERGGVIALVGP-TGAGKTTTIAKLAQRFA---AQHAPRDVALVT 387 (559)
T ss_pred HHHHHHHHHHHhcCc-CccccccCCCEEEEECC-CCCCHHHHHHHHHHHHH---HhcCCCceEEEe
Confidence 344555555443321 22233334567889998 69999999999998874 102256777664
No 351
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.01 E-value=0.04 Score=60.06 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...+.+.| -+|+||||+++.|+..+. .+|.+|...-
T Consensus 114 ~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 45788999 489999999999999994 6688887654
No 352
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.97 E-value=0.0083 Score=63.58 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=51.4
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH---hCCCcEEEEEEccCCCCC-H-
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK---LRGYDVVAVVFEDHGLVN-E- 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~---~~~~~v~gvi~N~~~~~~-~- 294 (719)
++|+|||-..|++... .....++..----+|+|+....-++..+-..++.++ ..+.++.|+|.|+..... .
T Consensus 116 ~yD~vlID~~~~~~~~----~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~ 191 (273)
T PRK13232 116 DLDYVFYDVLGDVVCG----GFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERE 191 (273)
T ss_pred cCCEEEEecCCCeeEC----CEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHH
Confidence 4999999996543211 011111100112577777776656655444444444 456889999999873222 2
Q ss_pred --HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 --VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 --~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+++.+ +.++++ ||....
T Consensus 192 ~~e~l~~~~--~~~vl~~Ip~~~~ 213 (273)
T PRK13232 192 LLEAFAKKL--GSQLIHFVPRDNI 213 (273)
T ss_pred HHHHHHHHh--CCCeEEECCCCHH
Confidence 3334444 778888 887654
No 353
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.96 E-value=0.0076 Score=63.55 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=51.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~~~~ 295 (719)
.||+|||-+.|++..+.... ....-+ -+|+|.....-++..+...++.++. .++++.|+|+|++... .
T Consensus 115 ~yD~ViID~~~~~~~~~~~~-----~l~aAD-~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~--~ 186 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFAT-----PLQYAD-YALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT--D 186 (268)
T ss_pred cCCEEEEecCCccccCcccc-----chhhcC-EEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH--H
Confidence 49999999977654432110 111112 2555666655566655555554442 4678899999998432 2
Q ss_pred HHHHhhcC-CCcEEe-cCCCCC
Q 005009 296 PLMSYLRN-RVPVLV-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~-~~pvlg-lP~~~~ 315 (719)
.+.+..+. +.|+++ ||....
T Consensus 187 ~~~~~~~~~~~~vl~~I~~~~~ 208 (268)
T TIGR01281 187 LIERFNERVGMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHHHcCCCEEEEcCCChH
Confidence 22322222 889998 877554
No 354
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.96 E-value=0.0015 Score=70.77 Aligned_cols=62 Identities=27% Similarity=0.252 Sum_probs=46.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC-CCCC-------------HH---HHHHhhcCCCcEEecCCCCC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH-GLVN-------------EV---PLMSYLRNRVPVLVLPPLPQ 315 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~-~~~~-------------~~---~l~~~~~~~~pvlglP~~~~ 315 (719)
+++|.....-++..+.-.++.|+..|+++.+||+|++ .... .. .+.+.+. +.||.-+|..+.
T Consensus 210 ~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~-~~~v~~vp~~~~ 288 (305)
T PF02374_consen 210 FRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFP-DLPVVKVPLLPE 288 (305)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE--SS
T ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCCC
Confidence 7999999999999999999999999999999999998 2222 11 2222222 799999998775
No 355
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.96 E-value=0.0032 Score=70.68 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|+.|-|+|- +|+||||++..|+..|. ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~-----~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIA-----ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHH-----hCCCeEEEEec
Confidence 568999998 69999999999999994 89999999994
No 356
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.93 E-value=0.042 Score=53.86 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|. +|+|||+++..|+..+. ++|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 566766 89999999999999984 6688888766
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.026 Score=63.10 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=47.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCc--hhHHHHhhcCC--CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCCH
Q 005009 220 MEILCIVETAGGVASPGPSGS--LQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVNE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~--~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~~ 294 (719)
++|+|||-++|.. +.+... -...+....+. .++||.+...+. +.....++.. ..+.+-|+|+-+.. ....
T Consensus 254 ~~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~--~~~~~~~~I~TKlDet~~~ 328 (388)
T PRK12723 254 DFDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQF--SPFSYKTVIFTKLDETTCV 328 (388)
T ss_pred CCCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHh--cCCCCCEEEEEeccCCCcc
Confidence 3999999999954 321110 11223333333 489999977663 2222222222 34678899999983 3333
Q ss_pred HHHHHhhcC-CCcEEec
Q 005009 295 VPLMSYLRN-RVPVLVL 310 (719)
Q Consensus 295 ~~l~~~~~~-~~pvlgl 310 (719)
-.+.+.... ++|+.-+
T Consensus 329 G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 329 GNLISLIYEMRKEVSYV 345 (388)
T ss_pred hHHHHHHHHHCCCEEEE
Confidence 333332222 8898654
No 358
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.92 E-value=0.0051 Score=60.00 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=33.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY 84 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~ 84 (719)
+.|+|. +|+|||+++..|++.|. ++|++|+++|+..++.
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l~-----~~G~~V~viK~~~~~~ 40 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKALK-----ARGYRVATIKHDHHDF 40 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEecccccc
Confidence 678888 69999999999999994 7799999999865543
No 359
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=96.91 E-value=0.029 Score=62.53 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=48.3
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cc-cccccc-cCCCccee---eehhccCC-CccchheeE
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTADL-LGCVPDIA---CYGKLLTG-GVIPLAATL 702 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~-~~a~e~-~gv~PDIv---tlgK~Lgg-G~~Plsavl 702 (719)
+.=.|... +.+.+++|.++|++||+++|.||+...|.-. +. ...... .+..+.++ +|||.++- | +=+|.++
T Consensus 182 ~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~ 259 (396)
T PRK09257 182 HNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALS 259 (396)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEE
Confidence 45556654 8999999999999999999999999887422 11 111111 11123343 69999984 7 6777776
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.042 Score=61.08 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.++|+|. +|||||++++.|+..+. ++|++|+.+-
T Consensus 205 ~~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3567889997 69999999999999884 6688887654
No 361
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.89 E-value=0.014 Score=55.54 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhC-CCcEEEEEEccCCCC-CHHHHH
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLV-NEVPLM 298 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~-~~~~l~ 298 (719)
+|++||.+.+++ +.....+++..+ -+|+|+....-++..+...++.+... +..-.++|+|++... ..+.+.
T Consensus 45 yd~VIiD~p~~~------~~~~~~~l~~aD-~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGI------SDNVLDFFLAAD-EVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVF 117 (139)
T ss_pred CCEEEEECCCCC------CHHHHHHHHhCC-eEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHH
Confidence 578999986542 223455666666 47788888777888877777777543 345678999998432 222233
Q ss_pred Hh--------hcCCCcEEe-cC
Q 005009 299 SY--------LRNRVPVLV-LP 311 (719)
Q Consensus 299 ~~--------~~~~~pvlg-lP 311 (719)
+. ...++|.+| ||
T Consensus 118 ~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 118 KRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHHhCCChhhceecC
Confidence 32 212678888 76
No 362
>PRK02769 histidine decarboxylase; Provisional
Probab=96.88 E-value=0.033 Score=62.16 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC---CcEEEeccccCccccCc-----cc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGV-----ET 673 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g---ilLI~DEVqTGfGRtG~-----~~ 673 (719)
+.|++.+.+ ...+...|++--+ ..+-|.+.| +++|.++|++|| +.+.+|=+|.|+ ..-. .+
T Consensus 148 ~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~ 216 (380)
T PRK02769 148 DDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPF 216 (380)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccC
Confidence 567777763 2234555655554 677889988 999999999998 699999999763 2210 12
Q ss_pred cccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 674 TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 674 a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
.+.. ..|.++++ |-+++- .+.|+++++++..+.+
T Consensus 217 d~~~---~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~ 252 (380)
T PRK02769 217 SFAD---GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERI 252 (380)
T ss_pred CccC---CCCEEEECCcccCCCC-CCcEEEEEehhhhhhc
Confidence 2211 57887664 644444 6889999999877665
No 363
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=96.87 E-value=0.04 Score=63.68 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=58.8
Q ss_pred cEEEE-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-----ccc---CCCcce----e
Q 005009 619 CIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-----DLL---GCVPDI----A 685 (719)
Q Consensus 619 ~iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-----e~~---gv~PDI----v 685 (719)
++.+| |.-| +.=-|.+. +.+-+++|.++|++||+++|.||++..+-..|.-+.. ..+ ++.||. -
T Consensus 199 ~~k~l~l~nP--~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 199 KVKGLILTNP--SNPLGTML-DKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CeeEEEEcCC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 45444 4555 34456544 7889999999999999999999999876333432211 111 123452 2
Q ss_pred eehhccC-CCccchheeEe-CHHHHhh
Q 005009 686 CYGKLLT-GGVIPLAATLA-TNAVFDS 710 (719)
Q Consensus 686 tlgK~Lg-gG~~Plsavl~-~~~i~~~ 710 (719)
+|+|.+| .| +-+|.+++ .+.+.+.
T Consensus 276 S~SK~~glpG-lRvG~li~~~~~l~~~ 301 (496)
T PLN02376 276 SLSKDMGLPG-FRVGIVYSFNDSVVSC 301 (496)
T ss_pred eccccCCCCc-ceEEEEEECCHHHHHH
Confidence 7899997 78 78999998 4555554
No 364
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.87 E-value=0.052 Score=57.22 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++.|-|++.-.|||||++++.|..+|. ++|++|...=
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 3578999999999999999999999994 7799987765
No 365
>PHA02518 ParA-like protein; Provisional
Probab=96.84 E-value=0.044 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.|-|++.-.|||||+++..|..+|. ++|++|...-
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 35789999999999999999999994 7899887665
No 366
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=96.82 E-value=0.028 Score=64.14 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=58.4
Q ss_pred CCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--c---ccCC-C-cc-ee--
Q 005009 617 SGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D---LLGC-V-PD-IA-- 685 (719)
Q Consensus 617 ~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e---~~gv-~-PD-Iv-- 685 (719)
+.++.++++ -| +.-.|. ..+++.+++|.++|++|++.+|.||+...+--.+..|.. + ..+. . ++ ++
T Consensus 198 ~~~vk~lll~nP--~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi 274 (447)
T PLN02607 198 NIRVRGVLITNP--SNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIV 274 (447)
T ss_pred CCCeeEEEEeCC--CCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEE
Confidence 345655554 45 333455 447899999999999999999999999763111211211 1 1111 1 34 22
Q ss_pred -eehhccC-CCccchheeEe-CHHHHhhh
Q 005009 686 -CYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 686 -tlgK~Lg-gG~~Plsavl~-~~~i~~~~ 711 (719)
.++|.+| .| +=+|++++ .+++.+.+
T Consensus 275 ~s~SK~fg~~G-lRvG~ivs~n~~l~~~~ 302 (447)
T PLN02607 275 YSLSKDLGLPG-FRVGTIYSYNDKVVTTA 302 (447)
T ss_pred EcchhcCCCCc-ceEEEEEEcCHHHHHHH
Confidence 6899998 78 78898888 66676544
No 367
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=96.81 E-value=0.024 Score=65.86 Aligned_cols=102 Identities=13% Similarity=-0.021 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++.. ..+.++.+|+.-.. ..+-|.+.| +++|.++|++||+.|.+|=+|.|....-.-+....-|+
T Consensus 250 ~~L~~~i~~~~--~~g~~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle 322 (522)
T TIGR03799 250 DALRDKCAELA--EQNIKPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIE 322 (522)
T ss_pred HHHHHHHHHHH--HCCCCcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCch
Confidence 44555554210 12334556665433 346788888 99999999999999999999976421111111112455
Q ss_pred Ccceeeeh--hccCCCccchheeEeCH-HHHhhh
Q 005009 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 681 ~PDIvtlg--K~LggG~~Plsavl~~~-~i~~~~ 711 (719)
..|.+|+. |.+.+- +..|++++++ +..+.+
T Consensus 323 ~aDSit~d~HK~l~~P-~g~G~llvr~~~~~~~~ 355 (522)
T TIGR03799 323 RADSVTIDAHKQLYVP-MGAGMVLFKDPALMSAI 355 (522)
T ss_pred hCCEEEEChhhcCCcC-cccEEEEEeCHHHHHHh
Confidence 68988764 766655 5778888874 454544
No 368
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=96.80 E-value=0.026 Score=61.54 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=55.9
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
+.++.-| +.-.|...+ .++|.++|+ +++++|+||+...|.. ..... .....+.++ +|+|.+| .| +
T Consensus 143 ~v~~~~P--~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~~~~~--~~~~~~~vi~l~S~SK~~~l~G-l 211 (337)
T PRK03967 143 AVFICSP--NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-KSLIG--LIDEYPNLILLRTFSKAFGLAG-I 211 (337)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-cchHH--HHhhCCCEEEEecchHhhcchh-h
Confidence 3445667 455676665 467777884 7999999999987731 12111 111224444 6999999 88 7
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
=+|.+++++++.+.+..
T Consensus 212 RiG~iv~~~~~i~~~~~ 228 (337)
T PRK03967 212 RAGYAIANEEIIDALYR 228 (337)
T ss_pred hheeeecCHHHHHHHHh
Confidence 89999999999887754
No 369
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.13 Score=57.53 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=66.8
Q ss_pred cCcEEEEeCCCCCCCCCCCCchh---HHHHhhcC-CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-C---
Q 005009 220 MEILCIVETAGGVASPGPSGSLQ---CDLYRPFR-LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-L--- 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~---~dla~~l~-~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~--- 291 (719)
.+|++||.+||=+.. +..++ .++.+.++ ..+|||+|.-.|- .+....+++.+ .+.|-|||+.+.. .
T Consensus 182 ~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ--dA~~~A~aF~e-~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 182 GYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ--DAVNTAKAFNE-ALGITGVILTKLDGDARG 255 (451)
T ss_pred CCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch--HHHHHHHHHhh-hcCCceEEEEcccCCCcc
Confidence 489999999995443 22333 33334443 3489999976662 22222333432 3789999999982 1
Q ss_pred CCHHHHHHhhcCCCcE--Ee----cCCCCCCCcchhhhhhhhchhhhhhHHHHHHHHHH
Q 005009 292 VNEVPLMSYLRNRVPV--LV----LPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYS 344 (719)
Q Consensus 292 ~~~~~l~~~~~~~~pv--lg----lP~~~~~~~~~~~~~l~~~~~~v~~Ll~~l~~~~~ 344 (719)
...--++..+ +.|+ +| +..++.++...++..+ +....+.+|++...+...
T Consensus 256 GaALS~~~~t--g~PIkFiGtGEki~dLE~F~P~R~asRI-LGMGDv~sLvEk~~~~~d 311 (451)
T COG0541 256 GAALSARAIT--GKPIKFIGTGEKIDDLEPFHPDRFASRI-LGMGDVLSLIEKAEEVVD 311 (451)
T ss_pred hHHHhhHHHH--CCCeEEEecCCCcccCCCcChHHHHHHh-cCcccHHHHHHHHHHhhh
Confidence 1234456666 7776 44 4445555544444433 222456667766655543
No 370
>PLN02880 tyrosine decarboxylase
Probab=96.77 E-value=0.012 Score=67.80 Aligned_cols=96 Identities=10% Similarity=-0.068 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++.. +.+....+|+.--- ...-|.+-| +++|.++|++||+.|.+|=.+.|+-..-..+-+...|+
T Consensus 224 ~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie 296 (490)
T PLN02880 224 ELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296 (490)
T ss_pred HHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch
Confidence 44555554310 12345566666654 556688888 99999999999999999988876533222222223465
Q ss_pred Ccceee--ehhccCCCccchheeEeCH
Q 005009 681 VPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
.+|-++ .=|-+..- ++.|++++++
T Consensus 297 ~aDSit~d~HKwl~~P-~~~g~llvr~ 322 (490)
T PLN02880 297 EADSFNMNAHKWFLTN-FDCSLLWVKD 322 (490)
T ss_pred hcCEEEECchhhcCCC-ccEEEEEEeC
Confidence 689775 57888766 5888888875
No 371
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.75 E-value=0.016 Score=62.22 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=50.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCC-CCCH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHG-LVNE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~-~~~~ 294 (719)
+||++||-+.|++..+.- +.....-+ -+|+|.....-++..+-..++.++. .++++.|+|+|++. ....
T Consensus 115 ~yD~IiIDt~~~l~~~a~-----~aal~~AD-~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-----AAPLNYAD-YCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLI 188 (290)
T ss_pred cCCEEEEecCCcceechh-----hhhhhcCC-EEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHH
Confidence 499999999665332210 00011111 2566666665555555555444432 35778999999983 2223
Q ss_pred HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
..+.+.+ +.|+++ ||+...
T Consensus 189 ~~~~~~~--~~~vl~~Ip~~~~ 208 (290)
T CHL00072 189 DKYVEAC--PMPVLEVLPLIED 208 (290)
T ss_pred HHHHHHc--CCceEEECCCChH
Confidence 3333334 889999 886554
No 372
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=96.74 E-value=0.06 Score=60.20 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=56.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccc-cccCC---CcceeeehhccC-CC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGC---VPDIACYGKLLT-GG 694 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~-e~~gv---~PDIvtlgK~Lg-gG 694 (719)
+.+|.-| +.-.|.+. +.+-+++|.++|++||+++|.||++..|-..+.. ... ..-+. .-.+-+|||.+| .|
T Consensus 176 ~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 176 IIYLCSP--NNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred EEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 3444455 55556644 7888999999999999999999999876332221 111 11111 111237899997 68
Q ss_pred ccchheeEeCHHHH
Q 005009 695 VIPLAATLATNAVF 708 (719)
Q Consensus 695 ~~Plsavl~~~~i~ 708 (719)
+-+|.+++++++.
T Consensus 253 -lRiG~~i~~~~l~ 265 (402)
T TIGR03542 253 -VRLGWTVVPKELT 265 (402)
T ss_pred -cceEEEEecHHHh
Confidence 7999999998765
No 373
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.032 Score=60.98 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
++.+|.++++ .++|-||+-|- .-.|++ .+..-|++|.++|+|+|+++|+|||..
T Consensus 189 L~~veal~DE-------NT~AivviNP~-NPcGnV--ys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 189 LDGVEALADE-------NTVAIVVINPN-NPCGNV--YSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred hHHHHHhhcc-------CeeEEEEeCCC-CCCccc--ccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 4677777764 47888999996 666654 478999999999999999999999985
No 374
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=96.72 E-value=0.023 Score=62.79 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=54.4
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc-CCCccee---eehhccC-CCc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~-gv~PDIv---tlgK~Lg-gG~ 695 (719)
.+|..| +.-.|.+. +.+-+++|.++|++ ++++|+||+..-|--.+.. ...... ...+.++ +|+|.+| .|
T Consensus 163 v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G- 237 (371)
T PRK05166 163 LMFSNP--SNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG- 237 (371)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcch-
Confidence 345666 56667766 56667777777764 8999999999765311111 111111 1122344 6999999 88
Q ss_pred cchheeEe-CHHHHhhhc
Q 005009 696 IPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~~ 712 (719)
+.+|.+++ ++++.+.+.
T Consensus 238 lRiG~~i~~~~~l~~~~~ 255 (371)
T PRK05166 238 LRVGYGLVSDPELVGLLD 255 (371)
T ss_pred hheeeeecCCHHHHHHHH
Confidence 79998765 678877664
No 375
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=96.70 E-value=0.006 Score=68.57 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHHH-HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA-~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
.+..+..+.+++..| .++.||...||.. |.+++..+ .++.+.|.++.+.|-+..
T Consensus 66 G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~----------------------~~~gd~VLv~RN~HkSv~ 120 (417)
T PF01276_consen 66 GIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMAL----------------------CRPGDKVLVDRNCHKSVY 120 (417)
T ss_dssp THHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHH----------------------TTTTCEEEEETT--HHHH
T ss_pred cHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHh----------------------cCCCCEEEEcCCcHHHHH
Confidence 345566666667777 4788888777654 55554444 223467889999999999
Q ss_pred ccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 522 GAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 522 galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.++-++|.. .|-. |. ...-|. ..+++ . .++.
T Consensus 121 ~alil~ga~Pvyi~----------------p~-~~~~gi-~~~i~--------------~-------------~~~~--- 152 (417)
T PF01276_consen 121 NALILSGAIPVYIP----------------PE-DNEYGI-IGGIS--------------P-------------DEFN--- 152 (417)
T ss_dssp HHHHHHTEEEEEEE----------------EE-E-TTS--BEEB---------------G-------------GGGS---
T ss_pred HHHHHcCCeEEEec----------------CC-ccccCC-ccCCC--------------h-------------hhhh---
Confidence 999998732 1111 00 000000 00000 0 0011
Q ss_pred HHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iA---AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.|++.|++. ++.-+ +||+-|- -.|+... ++++.++|++++++|++||.+-+.-+...+ --..
T Consensus 153 ~~~i~~~l~~~-----p~~k~~~~vvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~l-p~~a 219 (417)
T PF01276_consen 153 EEDIEEALKEH-----PDAKAPRLVVLTSPT---YYGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFHPL-PRSA 219 (417)
T ss_dssp HHHHHHHHHHC-----TTCHCESEEEEESS----TTSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCSGG-GTTC
T ss_pred HHHHHHHHHhC-----ccccCceEEEEeCCC---CCeEEEC----HHHHHHHhcccCCEEEEEccccccccCCCC-ccch
Confidence 25677788753 33323 7777774 3577777 999999999999999999999654333332 2223
Q ss_pred cCCCcc-------eeeeh--hccCC
Q 005009 678 LGCVPD-------IACYG--KLLTG 693 (719)
Q Consensus 678 ~gv~PD-------Ivtlg--K~Lgg 693 (719)
...-.| ++|-| |.|++
T Consensus 220 ~~~gad~~~~~~~~vvqS~HKtL~a 244 (417)
T PF01276_consen 220 LALGADRPNDPGIIVVQSTHKTLPA 244 (417)
T ss_dssp SSTTSS-CTSBEEEEEEEHHHHSSS
T ss_pred hhccCccccccceeeeechhhcccc
Confidence 455667 77643 66654
No 376
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=96.68 E-value=0.022 Score=63.46 Aligned_cols=207 Identities=16% Similarity=0.119 Sum_probs=120.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-cccCCCCC--ChHHHHHHHHH-HhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENV--YEPALECAELL-LQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~~~~~--~~~~~~Lae~L-~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
-|||..+ .|=. +|+|.+|+...+..+- ......+. .+...+.|+.. +++.+.+. +.+.|+++++|||-
T Consensus 45 vyld~~a------t~p~-~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~-~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGPM-DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADP-SDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCCC-CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCC-CcEEEeCCchHHHH
Confidence 6888544 6778 9999999998776532 21111122 23334444443 44555443 34999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.++|-.-+.+.. + .++.||.+... |.+...++...-. .+ +.
T Consensus 117 lvl~~v~~~~~~--~--------------~~k~iitl~~e-H~~v~~s~~~l~~--------------~g--~~------ 157 (428)
T KOG1549|consen 117 LVLKGVARFFGD--K--------------TKKHIITLQTE-HPCVLDSCRALQE--------------EG--LE------ 157 (428)
T ss_pred HHHHHhhccccc--c--------------ccceEEEeccc-CcchhHHHHHHHh--------------cC--eE------
Confidence 999977232221 1 12256655543 4433322221100 00 00
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...+|+++.. . .-++.+++.|+ .++.+|++.-| ..+-|+
T Consensus 158 ---Vt~lpv~~~~-----------------~------------~d~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 158 ---VTYLPVEDSG-----------------L------------VDISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred ---EEEeccCccc-----------------c------------ccHHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 1122222111 0 00355666664 37788999997 899999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATN 705 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~ 705 (719)
..| +++|.++|+++||.+++|=.|. . |+. -.+--.+.+|++++ =|.+|-= ++|+.-+++
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQa-v---G~i-~vDV~eln~D~~s~s~HK~ygp~--~iGaLYvr~ 257 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQA-V---GKI-PVDVQELNADFLSISAHKIYGPP--GIGALYVRR 257 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhhh-c---CCc-cccHHHcCchheeeecccccCCC--cceEEEEcc
Confidence 999 9999999999999999999994 3 441 12222345777654 2544431 256666664
No 377
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.67 E-value=0.016 Score=60.35 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchh----HHHHhhcCCC-EEEEE-------c-CC
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQ----CDLYRPFRLP-GILVG-------D-GR 260 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~----~dla~~l~~p-vilV~-------~-~~ 260 (719)
.++|++++.+.... ...|+||||=-|-+.+. +.... .++...++.. +++|- . .+
T Consensus 117 t~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDi--Es~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~g 183 (255)
T cd03113 117 TDEIKERIRRVAEK-----------SGADVVIVEIGGTVGDI--ESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAG 183 (255)
T ss_pred cHHHHHHHHHhhcc-----------CCCCEEEEEeCCccccc--cccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCC
Confidence 56777777776642 35899999986644332 22223 3344444322 22221 1 12
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEEEccC---CCCCHHHHHHhhcCCCcEEe-cCCCC
Q 005009 261 LGGISGTISAYESLKLRGYDVVAVVFEDH---GLVNEVPLMSYLRNRVPVLV-LPPLP 314 (719)
Q Consensus 261 ~g~i~~~~~~~~~l~~~~~~v~gvi~N~~---~~~~~~~l~~~~~~~~pvlg-lP~~~ 314 (719)
.-----|-.+++.|+++|+++.++|+|.- ...+.+.|..+. ++|+.+ +|..+
T Consensus 184 E~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFc--nVpve~VI~~~d 239 (255)
T cd03113 184 ELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC--DVPPEAVISAPD 239 (255)
T ss_pred ccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhc--CCCHHHeeecCC
Confidence 22344567889999999999999999985 234455555555 899888 55544
No 378
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.65 E-value=0.025 Score=59.92 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=29.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|.|.| -.|||||++|..|+.+|. ++|+||..+=
T Consensus 2 ~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 2 QIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred eeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 578888 899999999999999995 7899998764
No 379
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.64 E-value=0.013 Score=57.46 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (719)
|+.+.|+|. +|+|||+++..|++.|. ++|++|+.+|.-.++
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~-----~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS-----ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEEecCCc
Confidence 568999999 59999999999999994 789999999965543
No 380
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.64 E-value=0.049 Score=56.28 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|++.-.|+|||+++..|+.+|. ++|+||...-
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 568999999999999999999999994 7899998775
No 381
>PRK07908 hypothetical protein; Provisional
Probab=96.64 E-value=0.039 Score=60.27 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~P 697 (719)
.++.-| +.-.|.+.+ .++|.++|++ ++++|+||++.-| ..|......... .++++ +|+|.+| .| +-
T Consensus 143 i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~G-lR 212 (349)
T PRK07908 143 VVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLVLRSLTKTWSLAG-LR 212 (349)
T ss_pred EEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEEEeecccccCCcc-ce
Confidence 344466 566787776 3467888864 7889999999755 223322211122 23444 6799998 78 68
Q ss_pred hheeEeCHHHHhhhcC
Q 005009 698 LAATLATNAVFDSFVG 713 (719)
Q Consensus 698 lsavl~~~~i~~~~~~ 713 (719)
+|.+++++++.+.+..
T Consensus 213 iG~~~~~~~~~~~~~~ 228 (349)
T PRK07908 213 VGYALGAPDVLARLTR 228 (349)
T ss_pred eeeeecCHHHHHHHHh
Confidence 8999999998887653
No 382
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=96.62 E-value=0.026 Score=64.01 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEE--eccccCccccCccccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~--DEVqTGfGRtG~~~a~e~~g 679 (719)
+.+++.+. +++++|++... ...|.+.+ +++|.++|+++|+++|+ |.+..|+ . .... .
T Consensus 195 ~~l~~~i~--------~~t~~v~l~~p--n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~---~~~~--~ 253 (447)
T PRK00451 195 EALEAAVD--------DDTAAVVVQYP--NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--L---KPPG--E 253 (447)
T ss_pred HHHHHhcC--------CCeEEEEEECC--CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--C---CCcc--c
Confidence 45665553 35677777653 34577766 99999999999999998 6554322 1 1111 2
Q ss_pred CCcceeee-----hhccC-CCccchheeEeCHHHHhhh
Q 005009 680 CVPDIACY-----GKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtl-----gK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
...|+++. ||... +| --+|.+.+++++.+.+
T Consensus 254 ~~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~ 290 (447)
T PRK00451 254 YGADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQM 290 (447)
T ss_pred CCCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhC
Confidence 35688854 44422 23 1256677888887764
No 383
>PTZ00376 aspartate aminotransferase; Provisional
Probab=96.62 E-value=0.058 Score=60.36 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~ 678 (719)
+.+++.+.+. .+.+..-++.-| +.=.|... +.+-+++|.++|++||+++|.||+...|-.-+. ......+
T Consensus 164 ~~l~~~~~~~----~~~~~~~~~~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 236 (404)
T PTZ00376 164 DGMLEDLRTA----PNGSVVLLHACA--HNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLF 236 (404)
T ss_pred HHHHHHHHhC----CCCCEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHH
Confidence 4455666421 122333333455 45556655 789999999999999999999999987733221 1011111
Q ss_pred -CCCccee---eehhccC-CCccchhee---EeCHHHHh
Q 005009 679 -GCVPDIA---CYGKLLT-GGVIPLAAT---LATNAVFD 709 (719)
Q Consensus 679 -gv~PDIv---tlgK~Lg-gG~~Plsav---l~~~~i~~ 709 (719)
...+.++ +|||.++ .| +=+|.+ ++++++.+
T Consensus 237 ~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~ 274 (404)
T PTZ00376 237 AERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAA 274 (404)
T ss_pred HhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHH
Confidence 1112333 6899999 78 688887 56765433
No 384
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.60 E-value=0.015 Score=61.71 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++|.|.| -.|||||++|..|..+|. ++|+||..+=
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 57888998 899999999999999994 8899987764
No 385
>PTZ00377 alanine aminotransferase; Provisional
Probab=96.59 E-value=0.051 Score=62.42 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=58.1
Q ss_pred cE-EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-ccc-cccc--cCCCc------cee--
Q 005009 619 CI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VET-TADL--LGCVP------DIA-- 685 (719)
Q Consensus 619 ~i-AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~~~-a~e~--~gv~P------DIv-- 685 (719)
++ +.+++-| +.-.|.+. +.+-+++|.++|++||+++|.||+...+--.+ .-+ .... .++.+ .++
T Consensus 218 ~~k~l~l~~P--~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~ 294 (481)
T PTZ00377 218 TPRALVVINP--GNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSF 294 (481)
T ss_pred CeeEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEE
Confidence 44 4566667 45556654 78899999999999999999999997652212 111 1110 12222 244
Q ss_pred -eehhcc-C-CCccchheeEe---CHHHHhhhc
Q 005009 686 -CYGKLL-T-GGVIPLAATLA---TNAVFDSFV 712 (719)
Q Consensus 686 -tlgK~L-g-gG~~Plsavl~---~~~i~~~~~ 712 (719)
.|||.+ + .| +=+|.+++ .+++.+.+.
T Consensus 295 ~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~ 326 (481)
T PTZ00377 295 HSTSKGIIGECG-RRGGYFELTNIPPEVREQIY 326 (481)
T ss_pred ecCCcccccCCc-CceEEEEEeCCCHHHHHHHH
Confidence 589986 4 36 56777875 788877653
No 386
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.071 Score=60.08 Aligned_cols=214 Identities=11% Similarity=0.096 Sum_probs=128.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|+|..+ .+.. +..|.+|+.+....+.-.. .... .++...+.-++++++.+....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~~-p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQK-PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------cccC-CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 5788443 4556 8899999998776543211 1111 122334444555666664323679999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
.-......-+. - .....||..+--+|....--..+... .|.-
T Consensus 97 ln~va~~l~~~--~----------------~~gdeIv~s~~EH~sn~~pw~~~~~~--------------~Ga~------ 138 (405)
T COG0520 97 LNLVARGLGRS--L----------------KPGDEIVVSDLEHHSNIVPWQELAKR--------------TGAK------ 138 (405)
T ss_pred HHHHHHHhhhh--h----------------cCCCEEEEccCcchhhHHHHHHHHHh--------------cCcE------
Confidence 88776654111 1 11257999999899865433333210 0000
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...+|..+ +..+ + .+.++..+. ++.-.|.+--+ ...-
T Consensus 139 -----v~~i~~~~-----------------~g~~----~--------~~~~~~~i~--------~~Tklvais~v-Sn~t 175 (405)
T COG0520 139 -----VRVIPLDD-----------------DGLL----D--------LDALEKLIT--------PKTKLVALSHV-SNVT 175 (405)
T ss_pred -----EEEEecCC-----------------CCCc----C--------HHHHHHhcC--------CCceEEEEECc-cccc
Confidence 01111110 0000 0 244555443 45556667776 7778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.+.| +++|.++|+++|+++++|=+|. + |. .-.+-..+..|+++++ |.|.|- .-+|++.+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~---~h-~~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-A---GH-LPIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-c---Cc-cCCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 99998 9999999999999999999995 2 21 1122223457988775 877763 3478999999999876
No 387
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=96.54 E-value=0.012 Score=64.57 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=58.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..+|.-| +.-.|... +.+-++++.+.|++ ++++|+||++.-|. +...........|.++ +|+|.+| .| +
T Consensus 148 lv~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~~s~~~~~~~~~n~iv~rSfSK~~glaG-l 220 (351)
T PRK01688 148 VVYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFC--PQASLAGWLAEYPHLVILRTLSKAFALAG-L 220 (351)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcC--CCCChHHHHhhCCCEEEEecchHhhcCHH-H
Confidence 3566677 45567765 56677777777776 68999999997773 2111112222235554 7999998 67 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
-+|.+++++++.+.+..
T Consensus 221 RiGy~i~~~~~i~~l~~ 237 (351)
T PRK01688 221 RCGFTLANEEVINLLLK 237 (351)
T ss_pred HHhHHhCCHHHHHHHHh
Confidence 77889999999887753
No 388
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=96.53 E-value=0.031 Score=61.03 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=53.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..++.-| +.=.|...+ . +++++++ ++++++|.||+..-|. +.-+. ....-.+.++ +|||.+| .| +
T Consensus 141 ~i~i~nP--~NPTG~~~s-~---~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~G-l 209 (335)
T PRK14808 141 VVFIPNP--NNPTGHVFE-R---EEIERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYENLAVIRTFSKAFSLAA-Q 209 (335)
T ss_pred EEEEeCC--CCCCCCCcC-H---HHHHHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCCCEEEEEechhhccCcc-c
Confidence 4556667 344566665 3 3455556 5899999999998773 22110 1111123343 7899999 78 6
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
=+|.+++++++.+.+.
T Consensus 210 RvG~~v~~~~~~~~l~ 225 (335)
T PRK14808 210 RIGYVVSSEKFIDAYN 225 (335)
T ss_pred ceEEEEeCHHHHHHHH
Confidence 8888999999988774
No 389
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=96.53 E-value=0.045 Score=62.16 Aligned_cols=89 Identities=9% Similarity=-0.105 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc------CCcEEEeccccCccc---cCcc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGVE 672 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~------gilLI~DEVqTGfGR---tG~~ 672 (719)
+.|++.|.+ +...|++--+ ..+-|.+.| +++|.++|+++ |+.+.+|=+|.|+-. .++.
T Consensus 177 ~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~ 243 (431)
T TIGR01788 177 EQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL 243 (431)
T ss_pred HHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc
Confidence 567777752 2345555554 777899999 99999999999 999999999987421 2331
Q ss_pred -ccccccCCCcceeeeh--hccCCCccchheeEeCHH
Q 005009 673 -TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA 706 (719)
Q Consensus 673 -~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~ 706 (719)
+-+. -...|.++++ |- +.|-...|++++++.
T Consensus 244 ~~~~~--~~~~DSis~s~HK~-~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 244 EWDFR--LPRVKSINVSGHKY-GLVYPGVGWVIWRDE 277 (431)
T ss_pred hhhcC--CCCceEEEECchhc-cCCCCCcEEEEEeCh
Confidence 1111 1246777653 44 323245677888765
No 390
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.52 E-value=0.1 Score=54.72 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|.|+-.|||||++|+.|..+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 789999999999999999999999994 8899998765
No 391
>PRK15029 arginine decarboxylase; Provisional
Probab=96.52 E-value=0.019 Score=69.16 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccc
Q 005009 444 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523 (719)
Q Consensus 444 ~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga 523 (719)
+..+..+..++.+| .++.||..+||.+--.|+-++ . .++.+.|.++...|=+.+.+
T Consensus 206 ~I~eAq~~aA~~fg---A~~t~FlvNGST~gn~a~i~a---~------------------~~~gd~Vlv~RN~HKSv~~a 261 (755)
T PRK15029 206 AFGESEKYAARVFG---ADRSWSVVVGTSGSNRTIMQA---C------------------MTDNDVVVVDRNCHKSIEQG 261 (755)
T ss_pred HHHHHHHHHHHHhC---CCcEEEEeCChhHHHHHHHHH---h------------------cCCCCEEEeecccHHHHHHH
Confidence 34444445555677 467888877776544444333 1 22345777999999999999
Q ss_pred ccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHH
Q 005009 524 MEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (719)
Q Consensus 524 lslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (719)
+.++|.. .|-. |.. + .+-++.| ++.. ++. .+
T Consensus 262 l~L~ga~Pvyl~----------------P~~---~-~~Gi~~~------------i~~~-------------~~~---~e 293 (755)
T PRK15029 262 LILTGAKPVYMV----------------PSR---N-RYGIIGP------------IYPQ-------------EMQ---PE 293 (755)
T ss_pred HHHcCCeEEEec----------------ccc---c-ccCCccC------------CCcc-------------ccC---HH
Confidence 9998742 1111 110 0 0001101 0000 000 14
Q ss_pred HHHHHHhcCCCCC--CCCc-EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 603 YISQNLLQNPGLK--VSGC-IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 603 ~le~~l~~~~~~~--~~~~-iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
.+++.|+++...+ ...+ .++||+-|- -.|+..- ++.+.++|+++|++|++||.+-+..+....+.
T Consensus 294 ~i~~~l~~~p~~k~~~~~~~~avvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p 361 (755)
T PRK15029 294 TLQKKISESPLTKDKAGQKPSYCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_pred HHHHHHHhCchhhhccccCceEEEEECCC---CcceeeC----HHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence 5666665431111 1112 356666674 3466666 89999999999999999999977555566544
No 392
>PLN02231 alanine transaminase
Probab=96.51 E-value=0.081 Score=61.75 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cccc-cccc-
Q 005009 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-TADL- 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~~~-a~e~- 677 (719)
+.|++.+.+.. ....++. .+|+-| +.=.|.+ .+.+-+++|.++|++||+++|.|||..-+--. |+-+ .+..
T Consensus 256 ~~Le~~l~~~~--~~~~~~k~ivl~nP--~NPTG~v-ls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~ 330 (534)
T PLN02231 256 SELKKQLEDAR--SKGITVRALVVINP--GNPTGQV-LAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKV 330 (534)
T ss_pred HHHHHHHHHHh--hcCCCeEEEEEeCC--CCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHH
Confidence 45666664310 1112344 466667 3445654 47999999999999999999999999865221 2221 2111
Q ss_pred ---cCC---Cccee---eehhccCC--CccchheeEe---CHHHHhhh
Q 005009 678 ---LGC---VPDIA---CYGKLLTG--GVIPLAATLA---TNAVFDSF 711 (719)
Q Consensus 678 ---~gv---~PDIv---tlgK~Lgg--G~~Plsavl~---~~~i~~~~ 711 (719)
.|. ...++ .+||++.| | +-+|.+++ .+++.+.+
T Consensus 331 ~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l 377 (534)
T PLN02231 331 ARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQI 377 (534)
T ss_pred HhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHH
Confidence 121 11244 67998743 6 56676765 57777665
No 393
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=96.48 E-value=0.11 Score=58.32 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=57.2
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc-ee---eehhccC-CCc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-GGV 695 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD-Iv---tlgK~Lg-gG~ 695 (719)
.++.-| +.=.|.+. +.+-+++|.++|++||+++|.||+...|-.-+.. -....+.-.+| ++ +|||.+| .|
T Consensus 180 i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pG- 255 (409)
T PRK07590 180 IYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTG- 255 (409)
T ss_pred EEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcC-
Confidence 334466 44456654 7888999999999999999999999876322321 11111111123 23 6999997 78
Q ss_pred cchheeEeCHHHHh
Q 005009 696 IPLAATLATNAVFD 709 (719)
Q Consensus 696 ~Plsavl~~~~i~~ 709 (719)
+=+|.+++.+++++
T Consensus 256 lRiG~~i~~~~li~ 269 (409)
T PRK07590 256 TRCAYTVVPKELKG 269 (409)
T ss_pred ceeEEEEcCHHHhh
Confidence 68899999998886
No 394
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.44 E-value=0.078 Score=56.73 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...+=|||+ .|+|||++.-+|.+-|. ++|+||+..-
T Consensus 51 a~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 51 AHVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred CcEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 346889999 89999999999999995 8899998875
No 395
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.42 E-value=0.017 Score=61.64 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|+.|.|+|. +|+|||+++.-|++.|. ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 568999999 69999999999999994 889 8999994
No 396
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.096 Score=54.13 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=54.6
Q ss_pred CcEEEEeCC-----CCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChH---HHHHHHHHHHHh-CCCcEEEEEEccCCC
Q 005009 221 EILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKL-RGYDVVAVVFEDHGL 291 (719)
Q Consensus 221 ~d~vivEGa-----gG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~-~~~~v~gvi~N~~~~ 291 (719)
-|+|+-.=- ||+..|+.+++.. -+.+|.++.-.++ |.+.-.+.-+.. .++++.|+|.|.-..
T Consensus 118 ~DvviyDVLGDVVCGGFAmPiReg~Ad---------eiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~ 188 (278)
T COG1348 118 LDVVIYDVLGDVVCGGFAMPIREGYAD---------EIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV 188 (278)
T ss_pred CCEEEEeccCceeecceeeehhcccCc---------EEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc
Confidence 477765543 7778887655422 3556666554443 344444444443 458899999999854
Q ss_pred CCHHHH-HHhhcC-CCcEEe-cCCCCCCC
Q 005009 292 VNEVPL-MSYLRN-RVPVLV-LPPLPQDS 317 (719)
Q Consensus 292 ~~~~~l-~~~~~~-~~pvlg-lP~~~~~~ 317 (719)
..+..+ +++.++ +.|+++ ||+.+...
T Consensus 189 ~~e~e~v~~fa~~igt~li~~vPr~~ivq 217 (278)
T COG1348 189 DRERELVEAFAERLGTQLIHFVPRDNIVQ 217 (278)
T ss_pred ccHHHHHHHHHHHhCCceEeeccchHHHH
Confidence 444444 444444 999999 99977543
No 397
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.41 E-value=0.036 Score=58.34 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=52.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-CCHHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-VNEVPLM 298 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~~~~~l~ 298 (719)
+||+|||-+.|++....- ..... ....+ -+|+|+....-++..+-..++.++.-+..+.|+|.|.... ...+.+.
T Consensus 113 ~yD~ViIDt~~~~~~~~~--~~~~~-~~aaD-~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGF--SVPLR-EDYAD-EVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCCEEEEecCCCceEccc--ccccc-ccccc-eeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 499999999664321110 00000 01111 4667777776677777666676665444577888887632 2233333
Q ss_pred HhhcC-CCcEEe-cCCCCCC
Q 005009 299 SYLRN-RVPVLV-LPPLPQD 316 (719)
Q Consensus 299 ~~~~~-~~pvlg-lP~~~~~ 316 (719)
+..+. +.++++ ||.....
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v 208 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLV 208 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHH
Confidence 33322 778888 7776543
No 398
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=96.40 E-value=0.019 Score=60.86 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCC-CCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~-~g~~v~~~K 78 (719)
++.|-|++ -.|||||+++.-|..+|. + +|+||..+=
T Consensus 2 ~~vIav~~-KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 2 TRKIAIYG-KGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred ceEEEEEc-CCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 46788884 899999999999999994 5 599998764
No 399
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.40 E-value=0.16 Score=52.77 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|.+.-.|||||+++..|+.+|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 568999999999999999999999994 7899997765
No 400
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=96.38 E-value=0.087 Score=58.30 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+.+ ....++.+|++-+- +.=.|... +.+-++.+.++| +++++|.||+...|...... ....-.
T Consensus 155 ~~l~~~~~~----~~~~~~k~i~l~~P-~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~ 223 (374)
T PRK02610 155 AAAQSAIEQ----TQNPPVRVVFVVHP-NSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQH 223 (374)
T ss_pred HHHHHHHHh----hcCCCceEEEEeCC-CCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccchH---HHHhcC
Confidence 445555542 01235556655443 66667776 455677888877 49999999999877321111 111112
Q ss_pred ccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 682 PDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 682 PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
+.++ +|+|.+| .| +-+|.+++++++.+.+..
T Consensus 224 ~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~ 258 (374)
T PRK02610 224 PNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEK 258 (374)
T ss_pred CCEEEEEecchhccCcc-cceeeeecCHHHHHHHHH
Confidence 3433 7999996 68 799999999999887753
No 401
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.37 E-value=0.029 Score=60.45 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.+-+.| -.|||||++++-|+.+|. ++|+||..+=
T Consensus 6 ~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 6 IRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred ceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 46777877 789999999999999994 7899998875
No 402
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.1 Score=57.85 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=126.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
..+|+.+. -+.+|-. |++.+++++.++.+.. +..+...+|.+.+++..+.-..+.|+..|...|..+..++
T Consensus 23 ~~i~LssN--enP~gp~--~~~~~~~~~~~~~~~r-----YPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSN--ENPYGPP--PKVIEAIRAALDKLNR-----YPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCC--CCCCCCC--HHHHHHHHHHHHhhcc-----CCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 36677663 3356664 8999999988774432 3334567888888887762113578888888888888877
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
+.. .. ..+|+...-+|.-....+.... .. .
T Consensus 94 ~~~-----~~----------------gd~vl~~~Ptf~~Y~~~a~~~g-~~----------------------------~ 123 (356)
T COG0079 94 AFV-----EP----------------GDTVLIPEPTFSMYEIAAQLAG-AE----------------------------V 123 (356)
T ss_pred Hhh-----cC----------------CCEEEEcCCChHHHHHHHHhcC-Ce----------------------------E
Confidence 762 11 1467777776654322221111 00 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
+.++..+ |. .| .+.+...+. ...-..+|.-|- .-. |... +
T Consensus 124 ~~v~~~~-~~-----------~d------------------~~~~~~~~~-------~~~~lv~i~nPN-NPT-G~~~-~ 163 (356)
T COG0079 124 VKVPLKE-FR-----------LD------------------LDAILAAIR-------DKTKLVFLCNPN-NPT-GTLL-P 163 (356)
T ss_pred EEecccc-cc-----------cC------------------HHHHHHhhh-------cCCCEEEEeCCC-CCC-CCCC-C
Confidence 1122111 10 00 122333332 112246777785 444 4444 4
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-CCccchheeEeCHHHHhhhcCC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~~ 714 (719)
.+-++++.+.|.+ ++++|+||...=|+. --...... .++ ++ ||||+.| .| +=+|.+++++++.+.+..-
T Consensus 164 ~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~v 237 (356)
T COG0079 164 REELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNKV 237 (356)
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHHh
Confidence 5666777777777 999999999988855 11222222 455 55 8999887 45 5777799999999988654
Q ss_pred CCC
Q 005009 715 SKK 717 (719)
Q Consensus 715 ~~~ 717 (719)
-.+
T Consensus 238 r~p 240 (356)
T COG0079 238 RPP 240 (356)
T ss_pred cCC
Confidence 333
No 403
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=96.34 E-value=0.035 Score=61.74 Aligned_cols=169 Identities=18% Similarity=0.100 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++....|.+.++++-+ ...++.++||-.|.-.|+.... +...+||.+...|+|.
T Consensus 75 ~nPt~~~le~~iaal~g---a~~~l~fsSGmaA~~~al~~L~---------------------~~g~~iV~~~~~Y~gT- 129 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEG---AAHALLFSSGMAAITVALLHLL---------------------PAGDHIVATGDVYGGT- 129 (409)
T ss_pred CCCchHHHHHHHHHHhC---CceEEEecccHHHHHHHHHHhc---------------------CCCCcEEEeCCCcccH-
Confidence 46666788899998876 3579999999888888888762 2234799999999983
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..-+.-... .++.. ..|-|.+ +
T Consensus 130 ~~~l~~~~~-------------~~gie------------------------------~~~vd~~----------~----- 151 (409)
T KOG0053|consen 130 LRILRKFLP-------------KFGGE------------------------------GDFVDVD----------D----- 151 (409)
T ss_pred HHHHHHHHH-------------HhCce------------------------------eeeechh----------h-----
Confidence 221111100 00000 0011110 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.++ .++-+|.+|.. ..--.-++. +++++++|+++|+++|+|+...+. .-++-+..
T Consensus 152 ~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~l 212 (409)
T KOG0053|consen 152 LKKILKAIK--------ENTKAVFLESP-SNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPL 212 (409)
T ss_pred HHHHHHhhc--------cCceEEEEECC-CCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhc
Confidence 234555553 37899999975 222223333 889999999999999999998542 33444444
Q ss_pred Ccceee--ehhccCCCccchh-eeEeC-HHHHhhh
Q 005009 681 VPDIAC--YGKLLTGGVIPLA-ATLAT-NAVFDSF 711 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Pls-avl~~-~~i~~~~ 711 (719)
-.|||+ .-|=++|.-=-|+ +++.+ ++++..+
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l 247 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRL 247 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHH
Confidence 589996 5698987322233 34443 5655544
No 404
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=96.33 E-value=0.038 Score=60.51 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=61.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..++.-|- .=.|... +.+-++++.+.|.++++++|+||+...|...-..... .+ .++++ +|+|.+| .| +
T Consensus 133 ~v~l~nPn--NPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~--~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNPN--NPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAH--TD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhc--cC-CCCEEEEecChhhcCCcc-h
Confidence 57788884 4456655 5666888888899999999999999876321111111 11 24443 7999998 78 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
-+|.+++++++++.+..
T Consensus 206 RiGy~v~~~~li~~l~~ 222 (339)
T PRK06959 206 RAGFVLAAPALLAALRD 222 (339)
T ss_pred heEEEecCHHHHHHHHH
Confidence 88899999999988754
No 405
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=96.31 E-value=0.062 Score=57.49 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
++.+++.|.+ .++.+|++-=. -++.|+.- ..++...++|++|+++|++|-|-+ + .|.-|.++.|||
T Consensus 131 le~i~~~lsq-------h~p~~vfv~hg-dsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV 196 (385)
T KOG2862|consen 131 LEEITEKLSQ-------HKPKAVFVTHG-DSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV 196 (385)
T ss_pred HHHHHHHHHh-------cCCceEEEEec-Cccccccc---hHHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc
Confidence 4667777774 23444444332 34556643 357778899999999999999997 3 467899999998
Q ss_pred CcceeeehhccCC--CccchheeEeCHHHHhhhcC
Q 005009 681 VPDIACYGKLLTG--GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 681 ~PDIvtlgK~Lgg--G~~Plsavl~~~~i~~~~~~ 713 (719)
.-=+.--=|+|++ |. +-+..++..++.++.
T Consensus 197 DvaytgSQKaL~aP~GL---siisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 197 DVAYTGSQKALGAPAGL---SIISFSDKALEAIRD 228 (385)
T ss_pred cEEEecchhhcCCCCCc---ceeecCHHHHHHHhh
Confidence 5545556799986 64 446777777777754
No 406
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.30 E-value=0.26 Score=53.25 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+..+.|+|. +|+|||+++..|+..+. ++|++|..+.
T Consensus 34 ~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 457899988 99999999999999994 7799998766
No 407
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=96.27 E-value=0.05 Score=60.07 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=57.8
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~ 695 (719)
+.+|++... +.-.|.+.+ .+-++++.+.|+ +++++|+||+...|...... ....+..+.++ +|+|.+| .|
T Consensus 153 ~~lv~l~~p-~NPTG~~~~-~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~~--~~~~~~~~~vi~~~SfSK~~gl~G- 226 (364)
T PRK04781 153 AKLVFLCSP-SNPAGSAIA-LDQIERALQALQ-GKALVVVDEAYGEFSDVPSA--VGLLARYDNLAVLRTLSKAHALAA- 226 (364)
T ss_pred CeEEEEcCC-CCCCCCCcC-HHHHHHHHHhCC-CCcEEEEeCcchhhcCCcch--HHHHhhCCCEEEEecChhhccccc-
Confidence 444554332 666788774 555566666664 48999999999877421111 11122234544 7999998 78
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+=+|.+++++++++.+..
T Consensus 227 lRvGy~v~~~~l~~~l~~ 244 (364)
T PRK04781 227 ARIGSLIANAELIAVLRR 244 (364)
T ss_pred ceeeeeeCCHHHHHHHHh
Confidence 688889999999988764
No 408
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.063 Score=59.64 Aligned_cols=55 Identities=13% Similarity=-0.049 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
.+..+++.+.+.....++ -+...+|++.+++.+| ...+.-++||+.|.+.|++..
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----G~~v~~FE~~~ae~~G---~k~ava~~sgT~AL~laL~al 69 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----GPFVRRFEQAFAEYLG---VKYAVAVSSGTAALHLALLAL 69 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----ChHHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHhc
Confidence 345556666665543322 3566799999999998 468999999999999999966
No 409
>PRK06434 cystathionine gamma-lyase; Validated
Probab=96.24 E-value=0.036 Score=62.03 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=50.5
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-C
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-G 694 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G 694 (719)
+++..|++|-+ ....+.+.+ +++|.++|+++| +|+|-.+. - .+.....+.-.|++++| |-|+| |
T Consensus 147 ~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~~-s-----~~~~~pl~~gaDivv~S~tK~i~G~~ 213 (384)
T PRK06434 147 SNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATFA-S-----PYNQNPLDLGADVVIHSATKYISGHS 213 (384)
T ss_pred CCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCCC-C-----cccCCchhcCCCEEEeecccccCCCC
Confidence 45778889976 545555555 999999999998 56799973 1 12223344568998765 77865 2
Q ss_pred ccchheeEe-CHHHHhh
Q 005009 695 VIPLAATLA-TNAVFDS 710 (719)
Q Consensus 695 ~~Plsavl~-~~~i~~~ 710 (719)
=.=.|++++ ++++++.
T Consensus 214 d~~gG~vv~~~~~~~~~ 230 (384)
T PRK06434 214 DVVMGVAGTNNKSIFNN 230 (384)
T ss_pred CceEEEEecCcHHHHHH
Confidence 111344545 3455443
No 410
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.071 Score=54.09 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=49.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCc--hhHHHHhhc-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGS--LQCDLYRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~--~~~dla~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~~~ 295 (719)
++|+|||.++| .+|.+... -..++.+.. ...++||.+...+.- ..-...+..+ ..++-++|+-+.. ....-
T Consensus 83 ~~D~vlIDT~G--r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~--~~~~~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 83 GYDLVLIDTAG--RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYE--AFGIDGLILTKLDETARLG 157 (196)
T ss_dssp TSSEEEEEE-S--SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHH--HSSTCEEEEESTTSSSTTH
T ss_pred CCCEEEEecCC--cchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhh--cccCceEEEEeecCCCCcc
Confidence 48999999998 44432211 112333333 456899999766542 2222222222 2356799999983 23333
Q ss_pred HHHHhhcC-CCcEEecCCCCC
Q 005009 296 PLMSYLRN-RVPVLVLPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~-~~pvlglP~~~~ 315 (719)
.+.+.... +.||.-+-.-+.
T Consensus 158 ~~l~~~~~~~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 158 ALLSLAYESGLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHTSEEEEEESSSS
T ss_pred cceeHHHHhCCCeEEEECCCC
Confidence 33333322 899877644444
No 411
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=96.21 E-value=0.14 Score=58.69 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=57.7
Q ss_pred cEEE-EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--ccc------CC-Ccc-e---
Q 005009 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DLL------GC-VPD-I--- 684 (719)
Q Consensus 619 ~iAA-vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e~~------gv-~PD-I--- 684 (719)
++.+ +|.-| +.=-|.. .+.+.+++|.++|++||+.+|.||+...+--.+.-+.. +.. +. .++ +
T Consensus 191 ~~k~v~l~nP--~NPTG~~-~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l 267 (468)
T PLN02450 191 KVKGVLITNP--SNPLGTT-TTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIV 267 (468)
T ss_pred CeeEEEEecC--CCCCCcc-cCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEE
Confidence 4544 44456 3334554 47899999999999999999999999875333422211 111 11 122 2
Q ss_pred eeehhccC-CCccchheeEeCHH-HHhhh
Q 005009 685 ACYGKLLT-GGVIPLAATLATNA-VFDSF 711 (719)
Q Consensus 685 vtlgK~Lg-gG~~Plsavl~~~~-i~~~~ 711 (719)
-+|+|.++ .| +=+|.+++.++ +.+.+
T Consensus 268 ~S~SK~~~l~G-lRiG~li~~~~~l~~~~ 295 (468)
T PLN02450 268 YSLSKDLGLPG-FRVGAIYSNDEMVVSAA 295 (468)
T ss_pred EeccccCCCCC-ccEEEEEECCHHHHHHH
Confidence 37999998 78 68999999744 44443
No 412
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.18 E-value=0.18 Score=52.30 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|-+.++-.|+|||+.+++|+..|. ++|.+|.-+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 678889999999999999999999994 8899998776
No 413
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.14 Score=57.02 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=49.2
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHh--hcCCC--EEEEEcCCCC--hHHHHHHHHHHHHhC--C--CcEEEEEEccC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYR--PFRLP--GILVGDGRLG--GISGTISAYESLKLR--G--YDVVAVVFEDH 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~--~l~~p--vilV~~~~~g--~i~~~~~~~~~l~~~--~--~~v~gvi~N~~ 289 (719)
++|++||.++| .+|.+. ...-.++. ....| ++||.+...+ .+.+++..+..+... + .++.|+|+-+.
T Consensus 215 ~~DlVLIDTaG--~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 215 NKHMVLIDTIG--MSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred CCCEEEEcCCC--CCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 38999999998 455432 22222222 22333 5788875543 456666666544311 1 25789999998
Q ss_pred C-CCCHHHHHHhhcC-CCcEEec
Q 005009 290 G-LVNEVPLMSYLRN-RVPVLVL 310 (719)
Q Consensus 290 ~-~~~~~~l~~~~~~-~~pvlgl 310 (719)
. ....-.+.+..-. ++||.-+
T Consensus 292 DEt~~~G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 292 DEASNLGGVLDTVIRYKLPVHYV 314 (374)
T ss_pred ccCCCccHHHHHHHHHCcCeEEE
Confidence 3 2333333333222 8898664
No 414
>PRK13768 GTPase; Provisional
Probab=96.09 E-value=0.065 Score=56.47 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+..++|+|. .|+|||+++.++..++. ++|++|..+.
T Consensus 1 ~~~~i~v~G~-~G~GKTt~~~~~~~~l~-----~~g~~v~~i~ 37 (253)
T PRK13768 1 MMYIVFFLGT-AGSGKTTLTKALSDWLE-----EQGYDVAIVN 37 (253)
T ss_pred CcEEEEEECC-CCccHHHHHHHHHHHHH-----hcCCceEEEE
Confidence 4567899999 99999999999999994 7799988876
No 415
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.08 E-value=0.17 Score=53.59 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.+-|++ -.|||||++|.-|..+|. ++|+||..+=
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 45777786 899999999999999994 8899998764
No 416
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=96.07 E-value=0.077 Score=56.02 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=54.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh---HHHHHHHHHHHHhCC-CcEEEEEEccCCCCC-H
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG---ISGTISAYESLKLRG-YDVVAVVFEDHGLVN-E 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~---i~~~~~~~~~l~~~~-~~v~gvi~N~~~~~~-~ 294 (719)
++|+|+-.-.|=+-++. ..+=+-+..--.|++|.++..-+ .|.+..+++.+..++ .++.|+|.|.-..++ .
T Consensus 116 ~~D~v~yDVLGDVVCGG----FamPir~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~ 191 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCGG----FAMPIREGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEE 191 (273)
T ss_dssp TSSEEEEEEESSSSCTT----TTHHHHTTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHH
T ss_pred CCceEEEEEEeeeEEee----eehhhhhccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCch
Confidence 47888877654332221 12233333334678888877554 566667777776554 689999999664344 4
Q ss_pred HHHHHhhcC-CCcEEe-cCCCCC
Q 005009 295 VPLMSYLRN-RVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ~~l~~~~~~-~~pvlg-lP~~~~ 315 (719)
+.+.++.++ +.|+++ ||+.+.
T Consensus 192 ~~v~~fa~~~g~~i~~~iPr~~~ 214 (273)
T PF00142_consen 192 EIVEDFAERIGTPIIAFIPRSEI 214 (273)
T ss_dssp HHHHHHHHHHTSEEEEEE---HH
T ss_pred HHHHHHHHHcCCcEEEecCchHH
Confidence 444445444 999999 999764
No 417
>PLN02590 probable tyrosine decarboxylase
Probab=96.06 E-value=0.11 Score=60.76 Aligned_cols=97 Identities=9% Similarity=-0.091 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++-. +.+....+|+.--- ...-|.+-| +++|.++|++||+.|-+|=...|+...-..+..-..|+
T Consensus 272 ~~L~~~I~~d~--~~g~~P~~VvaTaG-TT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie 344 (539)
T PLN02590 272 ESLEEAISHDL--AKGFIPFFICATVG-TTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 344 (539)
T ss_pred HHHHHHHHHHH--hcCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCc
Confidence 44555554310 12334556666554 555688888 99999999999999999988877643322222223365
Q ss_pred Ccceee--ehhccCCCccchheeEeCHH
Q 005009 681 VPDIAC--YGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Plsavl~~~~ 706 (719)
..|=++ .=|-|.-. ++.|++++++.
T Consensus 345 ~ADSit~D~HK~l~~p-~~cg~llvr~~ 371 (539)
T PLN02590 345 NADSFNMNAHKWLFAN-QTCSPLWVKDR 371 (539)
T ss_pred cCCEEEECchhhcCcC-cCEEEEEecCH
Confidence 478665 46777777 58888999864
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.13 Score=61.94 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcC----CCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCC-CC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHG-LV 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~----~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~ 292 (719)
++|+|||.++| .++.+. ..+-++.+..+ .-++||.+.-.+ .++.++..+... .+.++-|+||-|.+ ..
T Consensus 263 ~~D~VLIDTAG--Rs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~--~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 263 DKHLVLIDTVG--MSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG--AGEDVDGCIITKLDEAT 337 (767)
T ss_pred CCCEEEEeCCC--CCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc--ccCCCCEEEEeccCCCC
Confidence 38999999999 455332 23333433222 348999986543 244444444322 23468899999983 22
Q ss_pred CHHH---HHHhhcCCCcEEecC
Q 005009 293 NEVP---LMSYLRNRVPVLVLP 311 (719)
Q Consensus 293 ~~~~---l~~~~~~~~pvlglP 311 (719)
..-. +...+ ++||.-|-
T Consensus 338 ~~G~iL~i~~~~--~lPI~yit 357 (767)
T PRK14723 338 HLGPALDTVIRH--RLPVHYVS 357 (767)
T ss_pred CccHHHHHHHHH--CCCeEEEe
Confidence 3323 33333 88986653
No 419
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.03 E-value=0.022 Score=61.26 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+.+.+.||+..+||-+.++.|.++|+ ++|+++.+.-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 4578999999999999999999999995 8899988765
No 420
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=95.98 E-value=0.13 Score=58.29 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEV 662 (719)
.+.|++.|.+ .++++|..+.++-. ...+|-.+.|.+++++++++|++||+.+++|=.
T Consensus 169 l~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 169 LEGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred HHHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhH
Confidence 3667888874 34567888888866 454455566899999999999999999999953
No 421
>PLN02368 alanine transaminase
Probab=95.95 E-value=0.42 Score=53.89 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=58.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccccc-ccc-CCC------ccee---ee
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTA-DLL-GCV------PDIA---CY 687 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~-e~~-gv~------PDIv---tl 687 (719)
+.++.-| +.=.|.+. +.+-+++|.++|++||+++|.||+...|--.| .+... +.. ++. +.++ +|
T Consensus 213 ~l~l~nP--~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 213 AMVIINP--GNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred EEEEECC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 3566678 34456544 79999999999999999999999998763223 22111 110 111 2344 57
Q ss_pred hhccC--CCccchheeE---eCHHHHhhhc
Q 005009 688 GKLLT--GGVIPLAATL---ATNAVFDSFV 712 (719)
Q Consensus 688 gK~Lg--gG~~Plsavl---~~~~i~~~~~ 712 (719)
||.+. .| +=+|.++ +.+++++.+.
T Consensus 290 SK~~~~~~G-lRiGy~i~~~~~~~li~~~~ 318 (407)
T PLN02368 290 SKGYWGECG-QRGGYFEMTNIPPKTVEEIY 318 (407)
T ss_pred CcccccCCc-cceEEEEEeCCCHHHHHHHH
Confidence 99984 56 5777787 4777777654
No 422
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.89 E-value=0.042 Score=64.86 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=38.4
Q ss_pred CCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 30 ~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
||.-.++|+.|-|+|. +|+|||++...|+..|. ++|+||+.+|=-
T Consensus 3 ~~~~~~~~~vi~ivG~-s~sGKTTlie~li~~L~-----~~G~rVavIKh~ 47 (597)
T PRK14491 3 PFTNPLSIPLLGFCAY-SGTGKTTLLEQLIPELN-----QRGLRLAVIKHA 47 (597)
T ss_pred cccCCCCccEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCceEEEEEcC
Confidence 4444456889999997 99999999999999994 889999999943
No 423
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.075 Score=57.19 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+++.||+.-+||-+.+.-|-+++. .+|+++.+.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 578999999999999999999999994 8899988765
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.22 Score=56.17 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. +|||||++++-|+..+. . .+|.+|..+-
T Consensus 224 ~vi~lvGp-tGvGKTTtaaKLA~~~~---~-~~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGP-TGSGKTTSIAKLAAKYF---L-HMGKSVSLYT 259 (432)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCeEEEec
Confidence 45888886 89999999999997652 1 5688887554
No 425
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=95.83 E-value=0.022 Score=65.36 Aligned_cols=72 Identities=14% Similarity=-0.040 Sum_probs=49.9
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC-C-Cccee--eehhccCCCccchheeEeCHHHHh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG-C-VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g-v-~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
|...+ +++++++|++||++|++|+.|+ +|-.|-....+.++ + ..|++ |++|+|.|-. .|.+++++++.+
T Consensus 232 ~~~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~--GG~I~~~~~l~~ 304 (493)
T PRK13580 232 PRRVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR--GGLVLAKKEYAD 304 (493)
T ss_pred CCCcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEEEeCChhhccCCC--eEEEEecHHHHH
Confidence 44555 9999999999999999999995 55555222111121 1 46876 6899995421 355888999888
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 305 ~L~ 307 (493)
T PRK13580 305 AVD 307 (493)
T ss_pred HHh
Confidence 773
No 426
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=95.79 E-value=0.22 Score=55.33 Aligned_cols=207 Identities=12% Similarity=0.083 Sum_probs=119.0
Q ss_pred CHHHHHHHHHhhhhccccc-CCCCCC-hHHHHHHHHHHhccCCC--CCCeEEEeCChHHHHHHHHHHHHHHhhccccccc
Q 005009 418 QIELARDMGYTAARFGHVM-FPENVY-EPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~-~~~~~~-~~~~~Lae~L~~~~~~~--~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~ 493 (719)
..-|.+|+++.+......+ ..++.+ +....|++++++..+.. ..+.|+.++.+.+|.-.|+-... ..|
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-----~~G--- 117 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-----NPG--- 117 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-----CCC---
Confidence 3456667776666542211 122333 34556777777744321 13569989988898887776552 112
Q ss_pred cccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccc
Q 005009 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (719)
Q Consensus 494 ~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (719)
..||.++-.|--......-+.+...+... .. ..|. +.-+ +|
T Consensus 118 -------------DeVii~eP~fd~Y~~~~~maG~tpv~v~~----------------~~--~~g~--~~s~-~~----- 158 (420)
T KOG0257|consen 118 -------------DEVIVFEPFFDCYIPQVVMAGGTPVFVPL----------------KP--KEGN--VSSS-DW----- 158 (420)
T ss_pred -------------CEEEEecCcchhhhhHHhhcCCcceeecc----------------cc--cccc--ccCc-cc-----
Confidence 47899988887755444333332222111 00 0000 0001 11
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc
Q 005009 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (719)
Q Consensus 574 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~ 653 (719)
..| .+.+|..+.+ ..=+-||.-|- .--|-+ .+.+-|++|.+||++|
T Consensus 159 ------~~D------------------~~~le~~~t~-------kTk~Ii~ntPh--NPtGkv-fsReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ------TLD------------------PEELESKITE-------KTKAIILNTPH--NPTGKV-FSREELERIAELCKKH 204 (420)
T ss_pred ------cCC------------------hHHHHhhccC-------CccEEEEeCCC--CCcCcc-cCHHHHHHHHHHHHHC
Confidence 011 2456766652 23356666673 334544 4789999999999999
Q ss_pred CCcEEEeccccCccccCc---cccccccCCCcce-------eeehhccCC-CccchheeEeCHHHHhhh
Q 005009 654 KIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI-------ACYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~---~~a~e~~gv~PDI-------vtlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
|+++|.|||.--+=-.|. .+++ .|++ --+||..|- | .-+|-+++.+.++...
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~as-----lPgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~ 267 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIAS-----LPGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSAL 267 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeec-----CCchhheEEEeccccceeeeee-eeeeeeechHHhhhhH
Confidence 999999999975433443 1222 2654 247998874 6 5777799987777543
No 427
>PLN02263 serine decarboxylase
Probab=95.75 E-value=0.35 Score=55.38 Aligned_cols=97 Identities=9% Similarity=0.049 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC-----cEEEeccccCcc----ccCcc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFW----RLGVE 672 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi-----lLI~DEVqTGfG----RtG~~ 672 (719)
+.|++.|.+ ...+.+.|+.--- ...-|.+-| +++|.++|++||+ .|-+|=...|+- +.-..
T Consensus 216 ~aL~~aI~~-----d~~~P~iVvataG-TT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 216 ADFKAKLLA-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEec-CCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 567777763 2234455544433 445678888 9999999999997 999999987751 11111
Q ss_pred ccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|.+ -...|=+++ =|-++.- +|.|+++.+++..+.+.
T Consensus 286 ~df---~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~ 323 (470)
T PLN02263 286 VTF---KKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLS 323 (470)
T ss_pred cCC---CcCccEEEECCccccCCC-cCEEEEEEehhhHhhhc
Confidence 111 123565543 3666666 68899999987765553
No 428
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.72 E-value=0.057 Score=58.13 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+.|-|+ --.|||||+++.-|..+|. ++|+||..+=
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46677776 6799999999999999994 8899998774
No 429
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.47 E-value=0.94 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+-|+|. .|+|||+++..|+..|. ++|.+|+.+.
T Consensus 57 ~~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 57 LRIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 36889998 99999999999999994 6799998877
No 430
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.38 E-value=0.017 Score=56.73 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccccc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~ 82 (719)
||+.|.|+|. +|+|||++...|++.|+ ++|++|+..|=-..
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~-----~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLK-----ARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHH-----hCCcEEEEEEecCC
Confidence 5788999999 89999999999999994 89999999995333
No 431
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.11 E-value=0.024 Score=54.37 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=32.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (719)
|.++|.|. +++|||+++..|++.|. ++|++|+++|=...|
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~g 40 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDHG 40 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-STT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccCC
Confidence 57899997 79999999999999995 789999999965553
No 432
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=94.96 E-value=0.53 Score=52.48 Aligned_cols=82 Identities=17% Similarity=0.068 Sum_probs=51.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceee--ehhccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvt--lgK~LggG~ 695 (719)
.+.+|+.--- ....|.+-+ +++|.++|+++++.|-+|=...|+.-.-..+-.-..|+ ..|=++ .-|-++--
T Consensus 194 ~p~~vvat~G-tt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P- 267 (373)
T PF00282_consen 194 TPFAVVATAG-TTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP- 267 (373)
T ss_dssp EEEEEEEEBS--TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-
T ss_pred cceeeeccCC-CcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-
Confidence 3445554433 445677766 99999999999999999998877322222222223344 467665 46777766
Q ss_pred cchheeEeCHH
Q 005009 696 IPLAATLATNA 706 (719)
Q Consensus 696 ~Plsavl~~~~ 706 (719)
++.|+++++++
T Consensus 268 ~~~~~~l~r~~ 278 (373)
T PF00282_consen 268 YGCGVLLVRDK 278 (373)
T ss_dssp SS-EEEEESSG
T ss_pred ccceeEEeecc
Confidence 58888988884
No 433
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.91 E-value=0.19 Score=60.22 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHH-HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsE-A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
.+..+..+..++.++ .++.||..+||. +|.+++..+ ..+.+.|.++...|=+..
T Consensus 195 G~i~eAe~~aA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv~ 249 (713)
T PRK15399 195 GPHLEAEEYIARTFG---AEQSYIVTNGTSTSNKIVGMYA----------------------APAGSTLLIDRNCHKSLA 249 (713)
T ss_pred hHHHHHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHh----------------------cCCCCEEEeecccHHHHH
Confidence 344555555566777 478888888854 455544444 223467889999999999
Q ss_pred ccccccCC
Q 005009 522 GAMEAQAP 529 (719)
Q Consensus 522 galslt~~ 529 (719)
.++-++|.
T Consensus 250 ~aLilsga 257 (713)
T PRK15399 250 HLLMMSDV 257 (713)
T ss_pred HHHHHcCC
Confidence 99988874
No 434
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.82 E-value=0.41 Score=53.44 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhc----CCCEEEEEcCC--CChHHHHHHHHHHHHhCCCcEEEEEEccCC----
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGR--LGGISGTISAYESLKLRGYDVVAVVFEDHG---- 290 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l----~~pvilV~~~~--~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~---- 290 (719)
+|+|+|.++| .++.+ .....++...+ .+.+-||.+.. .-.+-+++..+ +-+++.|+||-+.+
T Consensus 282 ~d~ILVDTaG--rs~~D-~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f-----~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAG--RSQYD-KEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF-----SLFPIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCC--CCccC-HHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh-----ccCCcceeEEEcccccCc
Confidence 8999999999 45543 23334444333 45677887733 22333333322 45789999999983
Q ss_pred CCCHHHHHHhhcCCCcEEec
Q 005009 291 LVNEVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 291 ~~~~~~l~~~~~~~~pvlgl 310 (719)
..+.-.+.... +.||.-+
T Consensus 354 ~G~~~s~~~e~--~~PV~Yv 371 (407)
T COG1419 354 LGNLFSLMYET--RLPVSYV 371 (407)
T ss_pred hhHHHHHHHHh--CCCeEEE
Confidence 23444444444 8898654
No 435
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=94.72 E-value=0.81 Score=53.29 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=52.9
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-g 693 (719)
+.+|+-|- .=.|.+ .+.+-+++|.++|++| ++++|.|||..-|- ..+-. .....|| ++ .+||.+| .
T Consensus 243 ai~l~nP~--NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~s--l~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 243 ALFVVNPS--NPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFV--DDFRS--LFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred EEEEeCCC--CCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhc--ccccc--hhhhCCCCEEEEEcchhhccCc
Confidence 44556784 444544 4789999999999987 99999999997663 22111 1112354 22 6999997 5
Q ss_pred CccchheeEeCHH
Q 005009 694 GVIPLAATLATNA 706 (719)
Q Consensus 694 G~~Plsavl~~~~ 706 (719)
| +=+|.+++.++
T Consensus 316 G-~RlG~i~~~~~ 327 (521)
T TIGR03801 316 G-WRLGTIALHKD 327 (521)
T ss_pred h-hhhhhhhcCch
Confidence 7 67888888754
No 436
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.61 E-value=0.17 Score=54.13 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-C-CceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-g-~~v~~~K 78 (719)
....+.|.|. ||||||++++.|+..+. .+ | ++|+++.
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 3457889998 89999999999999984 43 4 8898887
No 437
>PRK08637 hypothetical protein; Provisional
Probab=94.58 E-value=1.5 Score=48.82 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=55.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHh-----cCCcEEEeccccCccccCcccc--cc-ccCCCcce--e---ee
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVETT--AD-LLGCVPDI--A---CY 687 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k-----~gilLI~DEVqTGfGRtG~~~a--~e-~~gv~PDI--v---tl 687 (719)
.-++.-| +.=.|.. .+.+-+++|.++|++ |++++|.||+...|--.+.... +. ..+..+.+ + .+
T Consensus 149 ~~~~~~P--~NPTG~~-~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~ 225 (388)
T PRK08637 149 IVILNFP--NNPTGYT-PTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGA 225 (388)
T ss_pred EEEEeCC--CCCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccc
Confidence 3444456 4555654 478889999998875 9999999999987743443210 11 11223343 2 58
Q ss_pred hhccC-CCccchheeEeC------HHHHhhh
Q 005009 688 GKLLT-GGVIPLAATLAT------NAVFDSF 711 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~------~~i~~~~ 711 (719)
+|..+ .| +-+|.+++. +++.+.+
T Consensus 226 SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~ 255 (388)
T PRK08637 226 TKEEFVWG-FRVGFITFGTKAGSSQTVKEAL 255 (388)
T ss_pred cccCCCcc-cceEEEEEccccCCcHHHHHHH
Confidence 99865 46 688888753 5666554
No 438
>PRK09275 aspartate aminotransferase; Provisional
Probab=94.58 E-value=0.63 Score=54.24 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=52.8
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-g 693 (719)
+.+|+-|- .=.|.+. +++-+++|.++|++ +|+++|.|||..-|. +.+.. .....|| ++ +|||..| .
T Consensus 244 ai~l~nP~--NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~s--~~~~~~~~~I~v~SfSK~f~mt 316 (527)
T PRK09275 244 ALFLVNPS--NPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFV--DDFRS--LFAVLPYNTILVYSFSKYFGAT 316 (527)
T ss_pred EEEEeCCc--CCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhc--ccccC--HHHhCCCCEEEEeehhhhccCc
Confidence 44456783 4456544 79999999999965 599999999998763 22111 1112343 22 6899997 5
Q ss_pred CccchheeEeCHH
Q 005009 694 GVIPLAATLATNA 706 (719)
Q Consensus 694 G~~Plsavl~~~~ 706 (719)
| +=+|.+++.++
T Consensus 317 G-~RlG~i~~~~~ 328 (527)
T PRK09275 317 G-WRLGVIALHED 328 (527)
T ss_pred H-hHHhhhhcCch
Confidence 7 67888888875
No 439
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=94.53 E-value=0.21 Score=54.75 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=51.7
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~P 697 (719)
.+|.-| +.-.|.+.+ .+.+++|.+.|+ ++++|+||++.-|.. .. ...+.....|.++ +|+|.+| .| +=
T Consensus 151 i~i~nP--~NPTG~~~~-~~~l~~l~~~~~--~~~vivDeay~~~~~-~~-s~~~~~~~~~~~iv~~S~SK~~~l~G-lR 222 (354)
T PRK04635 151 VFICNP--NNPTGTVID-RADIEQLIEMTP--DAIVVVDEAYIEFCP-EY-SVADLLASYPNLVVLRTLSKAFALAG-AR 222 (354)
T ss_pred EEEeCC--CCCCCccCC-HHHHHHHHHhCC--CcEEEEeCchHhhcc-Cc-chHHHHhhCCCEEEEechHHHhhhhH-HH
Confidence 344555 566677765 444555555544 599999999976631 11 1111111123433 7999997 66 56
Q ss_pred hheeEeCHHHHhhhc
Q 005009 698 LAATLATNAVFDSFV 712 (719)
Q Consensus 698 lsavl~~~~i~~~~~ 712 (719)
+|.+++++++.+.+.
T Consensus 223 lG~~i~~~~~~~~l~ 237 (354)
T PRK04635 223 CGFTLANEELIEILM 237 (354)
T ss_pred HhhhhCCHHHHHHHH
Confidence 788999999988764
No 440
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=94.52 E-value=1.6 Score=50.13 Aligned_cols=221 Identities=17% Similarity=0.219 Sum_probs=131.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-----cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-----~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA 473 (719)
..+||..|+-.. .+--+..+.+++.+.+...... .......+....+++.+...-|-. .-+.++.+++..+|
T Consensus 90 ~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~a 167 (459)
T COG1167 90 SVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQA 167 (459)
T ss_pred ceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHH
Confidence 677887765221 2221335666655544322111 111223445557777776322211 12479999998899
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
.+...++.. ..| ..|+.=+-+|||.... +...|
T Consensus 168 l~l~~~~l~-----~pG----------------d~v~vE~PtY~~~~~~-~~~~g------------------------- 200 (459)
T COG1167 168 LDLLLRLLL-----DPG----------------DTVLVEDPTYPGALQA-LEALG------------------------- 200 (459)
T ss_pred HHHHHHHhC-----CCC----------------CEEEEcCCCcHHHHHH-HHHcC-------------------------
Confidence 987777661 122 3677777788883221 11111
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...+++|.. + .+-+ .+.+++.+.+ .++-++.+-|-.|.=.
T Consensus 201 -----~~~~~vp~d--------------~------~G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNPt 240 (459)
T COG1167 201 -----ARVIPVPVD--------------E------DGID--------PEALEEALAQ-------WKPKAVYVTPTFQNPT 240 (459)
T ss_pred -----CcEEecCCC--------------C------CCCC--------HHHHHHHHhh-------cCCcEEEECCCCCCCC
Confidence 112233310 0 0111 3567777763 3788999999867777
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc----eeeehhccCCCccchheeEeCHHHH
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD----IvtlgK~LggG~~Plsavl~~~~i~ 708 (719)
|... +.+=-++|.++|++||+.+|=|++..=|--.+..- ....+. .++ +-+|||.|.=| +=+|.+++.++++
T Consensus 241 G~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld-~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~ 317 (459)
T COG1167 241 GVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALD-APGRVIYLGSFSKTLAPG-LRLGYVVAPPELI 317 (459)
T ss_pred CCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhC-CCCCEEEEeeehhhcccc-cceeeeeCCHHHH
Confidence 8765 67888999999999999999999996552222211 111111 134 23899999988 6899999999988
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 318 ~~~~ 321 (459)
T COG1167 318 EKLL 321 (459)
T ss_pred HHHH
Confidence 8764
No 441
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.50 E-value=0.046 Score=59.75 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 34 ~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+..|+|-|+||.|++|||.||.-++|.| + ++|+||+...
T Consensus 123 ~~ekPviaV~atrtg~GKsaVS~~v~r~l----~-ergyrv~vVr 162 (449)
T COG2403 123 KLEKPVIAVTATRTGVGKSAVSRYVARLL----R-ERGYRVCVVR 162 (449)
T ss_pred hhcCceEEEEEeccccchhHHHHHHHHHH----H-HcCCceEEEe
Confidence 35689999999999999999999999999 4 8999999887
No 442
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.89 Score=50.35 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=49.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCC-CEEEEEcCCCChHHHHHHHH-HHHHhCCCcEEEEEEccCC--C--CC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRL-PGILVGDGRLGGISGTISAY-ESLKLRGYDVVAVVFEDHG--L--VN 293 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~-pvilV~~~~~g~i~~~~~~~-~~l~~~~~~v~gvi~N~~~--~--~~ 293 (719)
++|++||.++|-..---.--.-+.++.+..+- -||+|.|...|- +..+. ..++ .-++|-+||+.+.. . ..
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk-~~vdvg~vIlTKlDGhakGGg 258 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFK-ETVDVGAVILTKLDGHAKGGG 258 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHH-HhhccceEEEEecccCCCCCc
Confidence 59999999988322111001245677777762 289999976653 22221 2222 34789999999971 1 11
Q ss_pred HHHHHHhhcCCCcEEec
Q 005009 294 EVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 294 ~~~l~~~~~~~~pvlgl 310 (719)
..-....+ +.||..|
T Consensus 259 AlSaVaaT--ksPIiFI 273 (483)
T KOG0780|consen 259 ALSAVAAT--KSPIIFI 273 (483)
T ss_pred eeeehhhh--CCCEEEE
Confidence 11123344 7887664
No 443
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.34 E-value=2 Score=45.04 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++.++|.+.-.|||||++++.|+.++. ++|.+|..+-
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 4567899999999999999999999994 7788886654
No 444
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.27 E-value=1.6 Score=47.77 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=51.6
Q ss_pred cCcEEEEeCCCCCCCCCC---CCchhHHHHhhcCCC-----EEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 220 MEILCIVETAGGVASPGP---SGSLQCDLYRPFRLP-----GILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~---~~~~~~dla~~l~~p-----vilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
++|+|||.+||=+..-.+ +=.-..++++.. .| ++||.|.-.| +++|+-.--++ ..|-|+|+-+.
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~-~~~ap~e~llvlDAttGqnal~QAk~F~ea-----v~l~GiIlTKl 294 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKD-DPDAPHEILLVLDATTGQNALSQAKIFNEA-----VGLDGIILTKL 294 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccc-cCCCCceEEEEEEcccChhHHHHHHHHHHh-----cCCceEEEEec
Confidence 599999999997665432 001223333333 34 8888887766 45555443332 45889999998
Q ss_pred C-C---CCHHHHHHhhcCCCcEEecC
Q 005009 290 G-L---VNEVPLMSYLRNRVPVLVLP 311 (719)
Q Consensus 290 ~-~---~~~~~l~~~~~~~~pvlglP 311 (719)
. . .-.-.|...+ ++||+-|-
T Consensus 295 DgtAKGG~il~I~~~l--~~PI~fiG 318 (340)
T COG0552 295 DGTAKGGIILSIAYEL--GIPIKFIG 318 (340)
T ss_pred ccCCCcceeeeHHHHh--CCCEEEEe
Confidence 2 1 2244456666 89986643
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.27 E-value=0.83 Score=52.60 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeE
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVY 76 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g-~~v~~ 76 (719)
..+.+.|. +||||||.++.|+..+. . ++| ++|+.
T Consensus 257 ~Vi~LvGp-nGvGKTTTiaKLA~~~~---~-~~G~~kV~L 291 (484)
T PRK06995 257 GVFALMGP-TGVGKTTTTAKLAARCV---M-RHGASKVAL 291 (484)
T ss_pred cEEEEECC-CCccHHHHHHHHHHHHH---H-hcCCCeEEE
Confidence 57899998 89999999999998873 2 445 46653
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.22 E-value=1.2 Score=47.59 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 74 ~~~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 74 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3468899998 99999999999999884 5577777664
No 447
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.13 E-value=0.94 Score=43.76 Aligned_cols=61 Identities=20% Similarity=0.026 Sum_probs=46.7
Q ss_pred hhHHHHhhcCCCEEEEEc-CCCC-hHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhc
Q 005009 241 LQCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (719)
Q Consensus 241 ~~~dla~~l~~pvilV~~-~~~g-~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~ 302 (719)
..-.+++.++.|||=|+. .++- .-...-.+.+.|+..|++=+ +.++-+.....+.|++|++
T Consensus 80 ~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 80 FPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 345677888999998887 5555 45666678888999998744 7777777888899999874
No 448
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.09 E-value=0.32 Score=47.04 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+.|. .|+|||+++..|...+. ++|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 566776 89999999999999994 7788887776
No 449
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.00 E-value=0.075 Score=45.61 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++++|.. |+|||+++..|++.|. +.|++|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788887 9999999999999994 6799999998
No 450
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=93.93 E-value=0.16 Score=55.46 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.-|+++|.|. |++|||++|.-||..+. +.|++..|.-
T Consensus 102 ~GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 102 YGPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred cCCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 3578999997 99999999999999995 6688877765
No 451
>PRK13578 ornithine decarboxylase; Provisional
Probab=93.92 E-value=0.39 Score=57.71 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=41.6
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHH-HHhcCCcEEEeccccCccccCcc---ccccccCCCcc----eeee--hh
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVE---TTADLLGCVPD----IACY--GK 689 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L-c~k~gilLI~DEVqTGfGRtG~~---~a~e~~gv~PD----Ivtl--gK 689 (719)
-++||.-|- -.|+..- ++.+.++ |++++ .|+|||.+-|.-+...+ +.-......|| ++|- =|
T Consensus 284 k~vvit~pT---YdG~~yd----i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHK 355 (720)
T PRK13578 284 RLAVIQLGT---YDGTIYN----ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHK 355 (720)
T ss_pred eEEEEECCC---Ccceeec----HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhh
Confidence 456766664 3566666 7888888 78888 99999999775454543 21122334567 6653 35
Q ss_pred ccCC
Q 005009 690 LLTG 693 (719)
Q Consensus 690 ~Lgg 693 (719)
-|++
T Consensus 356 tL~a 359 (720)
T PRK13578 356 QQAG 359 (720)
T ss_pred cchh
Confidence 5543
No 452
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=93.91 E-value=0.43 Score=52.82 Aligned_cols=64 Identities=13% Similarity=-0.079 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEe-CChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~-~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~-~SGsEA~E~AlKlA 481 (719)
+|+|.+|+..+..... .........+...+.-++|.++++-..-..|+|+ .||+.|+|+++.-.
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l 80 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL 80 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc
Confidence 7888888876532222 1111112245556667777777763212367775 78999999999655
No 453
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.82 E-value=0.38 Score=57.68 Aligned_cols=145 Identities=16% Similarity=0.211 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCChHH-HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccc
Q 005009 444 PALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (719)
Q Consensus 444 ~~~~Lae~L~~~~~~~~~~rv~f~~SGsE-A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g 522 (719)
+..+..+..++.++ .++.||...||. +|.+++..+ ..+.+.|.++...|=+...
T Consensus 196 ~i~eAe~~AA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv~h 250 (714)
T PRK15400 196 PHKEAEEYIARVFN---ADRSYMVTNGTSTANKIVGMYS----------------------APAGSTVLIDRNCHKSLTH 250 (714)
T ss_pred HHHHHHHHHHHHhC---CCcEEEEeCchHHHHHHHHHHh----------------------cCCCCEEEeecccHHHHHH
Confidence 44455555556677 478888888855 444444433 2234678899999999999
Q ss_pred cccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 523 AMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 523 alslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
++-++|.. .|-.+ -+..+|.. -++| .++ .
T Consensus 251 aLilsga~PVYl~P----~rn~~Gi~--------------g~I~~~~~----------------------------~--- 281 (714)
T PRK15400 251 LMMMSDVTPIYFRP----TRNAYGIL--------------GGIPQSEF----------------------------Q--- 281 (714)
T ss_pred HHHHcCCeEEEecc----cccccCCc--------------cCCCcccc----------------------------C---
Confidence 99888742 12111 00000100 0011 000 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
.+.+++.|++... .....++||.-|- -.|+..- ++.+.++|+.++ ++|||.+-|.-+....+
T Consensus 282 ~e~i~~~i~~~p~--ak~p~~~vit~pT---YdG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 282 HATIAKRVKETPN--ATWPVHAVITNST---YDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred HHHHHHHHHhCcc--ccCccEEEEECCC---CccEecC----HHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 2567777765310 0112358887774 3466666 789999999888 68999997654444433
No 454
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.73 E-value=0.37 Score=50.88 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=37.0
Q ss_pred hHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 12 HHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+|-+++.+.. ....+=|||+ .|+|||+++-.|.+.|. ++|++|+.+-
T Consensus 14 ~~~~ll~~l~~~~g----------~a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPHTG----------RAHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHhhcC----------CceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 55667777775531 1236889999 89999999999999995 7799988775
No 455
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=93.70 E-value=0.75 Score=52.80 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--c-cc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D-LL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e-~~ 678 (719)
+.+++.+++.. ..+ +|+.=-. .-.-|.+-+ +++|.++|+++|+.|.+|=...||=. .+.-. . -+
T Consensus 196 ~~l~~~i~~~t---~~g---~vV~~aG-tT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~--pf~~~~~~~~f 262 (460)
T COG0076 196 DALEEAIDENT---IGG---VVVGTAG-TTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLL--PFLEPDGRWDF 262 (460)
T ss_pred HHHHHHHHhhc---cCc---eEEEEec-CCCCCccCC----HHHHHHHHHHcCCcEEEEccccceee--cccCccchhhc
Confidence 56777777531 111 2222221 233455555 99999999999999999999987622 11111 1 13
Q ss_pred CC-Ccceeee-hhccCCCccchheeEeCHH
Q 005009 679 GC-VPDIACY-GKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 679 gv-~PDIvtl-gK~LggG~~Plsavl~~~~ 706 (719)
++ ..|-||+ +--+|.-.+|.|+++.+++
T Consensus 263 ~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 263 GLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred CCCCceEEEECcccccCCCCCceEEEEECH
Confidence 44 3454443 4445555567778888887
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.30 E-value=1.7 Score=46.89 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+-|+|. .|+|||++...|++.|. ...+++.+.
T Consensus 106 ~v~l~G~-pGsGKTTLl~~l~~~l~------~~~~~~VI~ 138 (290)
T PRK10463 106 VLNLVSS-PGSGKTTLLTETLMRLK------DSVPCAVIE 138 (290)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc------cCCCEEEEC
Confidence 5667776 89999999999999992 234666664
No 457
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.21 E-value=4.1 Score=41.28 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.|+|. .|+|||++...|++.+ ..+.+++.++
T Consensus 22 ~~~i~~~G~-~gsGKTTli~~l~~~~------~~~~~v~v~~ 56 (207)
T TIGR00073 22 LVVLNFMSS-PGSGKTTLIEKLIDNL------KDEVKIAVIE 56 (207)
T ss_pred cEEEEEECC-CCCCHHHHHHHHHHHH------hcCCeEEEEE
Confidence 457889988 9999999999999987 4467899888
No 458
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.95 E-value=0.44 Score=48.18 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=31.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC-CCChHHHHHH
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFT 95 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~-~~~d~~~~~~ 95 (719)
.+=|.| .-|+|||++...+++.|+ . .++++..+ +.- ...|+.++.+
T Consensus 15 ~i~v~G-p~GSGKTaLie~~~~~L~-----~-~~~~aVI~----~Di~t~~Da~~l~~ 61 (202)
T COG0378 15 RIGVGG-PPGSGKTALIEKTLRALK-----D-EYKIAVIT----GDIYTKEDADRLRK 61 (202)
T ss_pred EEEecC-CCCcCHHHHHHHHHHHHH-----h-hCCeEEEe----ceeechhhHHHHHh
Confidence 444555 499999999999999993 3 48888877 321 2356555544
No 459
>PRK08760 replicative DNA helicase; Provisional
Probab=92.84 E-value=0.65 Score=53.54 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
-.+.|.+..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a---~-~~g~~V~~fS 265 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAA---I-KSKKGVAVFS 265 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHH---H-hcCCceEEEe
Confidence 35888889999999999999997662 2 5588999995
No 460
>PRK05595 replicative DNA helicase; Provisional
Probab=92.81 E-value=0.79 Score=52.29 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|..+|+|||++++-++..+. . ++|.+|.+|=
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a---~-~~g~~vl~fS 237 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAA---L-REGKSVAIFS 237 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHH---H-HcCCcEEEEe
Confidence 44888899999999999999997542 1 5699999995
No 461
>PRK08506 replicative DNA helicase; Provisional
Probab=92.39 E-value=1.6 Score=50.36 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|.|..+|+|||++++-++..+. ++|.+|.+|=
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 34899999999999999999998773 6689999995
No 462
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.37 E-value=3.5 Score=41.82 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+-|+|. .|+|||++...|++.+
T Consensus 3 ~i~i~G~-~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGP-VGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECC-CCCCHHHHHHHHHHhh
Confidence 3667776 8999999999999988
No 463
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.20 E-value=0.16 Score=50.62 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...++++|. +|+|||+++.+++..+. ++|++|.|++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~-----~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAI-----RKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhc-----cCCcceeEee
Confidence 457999996 99999999999999885 7899999998
No 464
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=92.08 E-value=0.64 Score=51.73 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCC--Cc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG--GV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~Lgg--G~ 695 (719)
|+..-+|-. .|.+.| ++++.+ ++||+++|+|=+|+ +|- .-+-.+. -|++++ -|.|+| |
T Consensus 140 V~~~h~~t~----tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~--~pidv~~----iD~~~~s~~K~l~~P~G- 201 (378)
T PRK03080 140 VVFTWNGTT----TGVRVP----VARWIG--ADREGLTICDATSA-AFA--LPLDWSK----LDVYTFSWQKVLGGEGG- 201 (378)
T ss_pred EEEEecCCc----cceecc----chhhcc--ccCCCeEEEecccc-ccc--CCCCHHH----CcEEEEehhhhCCCCCc-
Confidence 555555553 578877 667666 78999999999996 422 1232232 388854 598876 4
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+|.+.++++..+.+.
T Consensus 202 --~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 202 --HGMAILSPRAVERLE 216 (378)
T ss_pred --eEEEEECHHHHHhhh
Confidence 688999999887654
No 465
>PRK05636 replicative DNA helicase; Provisional
Probab=91.91 E-value=1 Score=52.21 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-+++... . +.|++|.+|=
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a---~-~~g~~v~~fS 301 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSAS---I-KHNKASVIFS 301 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 34778888999999999999987652 2 5688898884
No 466
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.68 E-value=0.24 Score=49.40 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++.+.|+|. +|+|||++...|++.| + .+|++|+..|
T Consensus 5 ~~~ii~ivG~-sgsGKTTLi~~li~~l----~-~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAW-SGTGKTTLLKKLIPAL----C-ARGIRPGLIK 41 (173)
T ss_pred CceEEEEECC-CCChHHHHHHHHHHHH----h-hcCCeEEEEE
Confidence 4567888886 9999999999999999 3 7799999999
No 467
>PLN02397 aspartate transaminase
Probab=91.63 E-value=0.66 Score=52.47 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=50.2
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC---cccccccc-CCCccee---eehhccC
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLL-GCVPDIA---CYGKLLT 692 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG---~~~a~e~~-gv~PDIv---tlgK~Lg 692 (719)
++-++--| +.=.|.+. +.+.+++|.++|++||+++|.||+..+|.--| .......+ .....++ +|||.++
T Consensus 196 ~~i~~~~P--~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~ 272 (423)
T PLN02397 196 FVLLHACA--HNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG 272 (423)
T ss_pred EEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCC
Confidence 33333335 34446554 78899999999999999999999999883212 11111111 1112244 6899999
Q ss_pred -CCccchheeE
Q 005009 693 -GGVIPLAATL 702 (719)
Q Consensus 693 -gG~~Plsavl 702 (719)
.| +=+|.++
T Consensus 273 ~~G-~RvG~~v 282 (423)
T PLN02397 273 LYG-ERVGALS 282 (423)
T ss_pred Ccc-ccceEEE
Confidence 57 5777763
No 468
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.61 E-value=1.2 Score=50.45 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a---~-~~g~~vl~~S 231 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAA---I-KEGKPVAFFS 231 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 34888888899999999999887653 2 4688999985
No 469
>PLN02271 serine hydroxymethyltransferase
Probab=91.59 E-value=3.4 Score=48.44 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccch-heeEeCHH
Q 005009 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPL-AATLATNA 706 (719)
Q Consensus 643 l~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Pl-savl~~~~ 706 (719)
+++++++|+++|++|++|-.|+ .|-........-+ ...|++| .-|.|-| |- |.++++++
T Consensus 315 ~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~-~~aDvvt~TTHKtLrG---PrGG~I~~r~~ 376 (586)
T PLN02271 315 YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPF-DYCDIVTSTTHKSLRG---PRGGIIFYRKG 376 (586)
T ss_pred HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCC-cCCcEEEeCCcccCCC---CCceEEEeccc
Confidence 7899999999999999999997 3223221110011 1479885 5699965 11 33565654
No 470
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.53 E-value=0.25 Score=48.54 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++..++|||. .|||||+++.-|...|. ++|++|+.|-
T Consensus 4 ~~mki~ITG~-PGvGKtTl~~ki~e~L~-----~~g~kvgGf~ 40 (179)
T COG1618 4 MAMKIFITGR-PGVGKTTLVLKIAEKLR-----EKGYKVGGFI 40 (179)
T ss_pred cceEEEEeCC-CCccHHHHHHHHHHHHH-----hcCceeeeEE
Confidence 3457999997 99999999999999994 8899999886
No 471
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=91.49 E-value=2 Score=48.30 Aligned_cols=170 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++-...|+++++++=| -+.++.++||--|+-+++-..+ +.| ..||..+..|.|.-
T Consensus 61 ~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll-----~~G----------------D~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALL-----KAG----------------DHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhc-----CCC----------------CEEEecCCccchHH
Confidence 46777889999999865 3689999999888888765542 112 47888888887732
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
...-.+. +.++. . +.|-|. .+
T Consensus 117 ~~~~~~l--------------~~~gi--------------~----------------~~~~d~-------~~-------- 137 (396)
T COG0626 117 RLFEKIL--------------QKFGV--------------E----------------VTFVDP-------GD-------- 137 (396)
T ss_pred HHHHHHH--------------HhcCe--------------E----------------EEEECC-------CC--------
Confidence 2211111 00000 0 001110 00
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.+. ++++-+|++|+- ..----+.. +++|.++++++|+++|+|....+ + ..++-+..
T Consensus 138 ~~~~~~~~~-------~~~tk~v~lEtP-sNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P--~~q~PL~~ 199 (396)
T COG0626 138 DEALEAAIK-------EPNTKLVFLETP-SNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----P--VLQRPLEL 199 (396)
T ss_pred hHHHHHHhc-------ccCceEEEEeCC-CCccccccc----HHHHHHHHHhcCCEEEEECCccc----c--cccChhhc
Confidence 122333332 247889999975 222222233 89999999999999999999853 2 22222333
Q ss_pred Ccceee--ehhccCCCc-cchheeEe-CHHHHhhh
Q 005009 681 VPDIAC--YGKLLTGGV-IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~-~Plsavl~-~~~i~~~~ 711 (719)
-.|||+ .-|=|+|.- +=.|+|++ ++++.+.+
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~ 234 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELL 234 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHH
Confidence 479985 679998721 22233554 44555543
No 472
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=1.7 Score=48.79 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCC---CC---------chhHHHHhhcCCCEEEEEc-
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SG---------SLQCDLYRPFRLPGILVGD- 258 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~---~~---------~~~~dla~~l~~pvilV~~- 258 (719)
..++.|.+.+.+ .+.|++||...-.++++.- .+ ...+++||.-+.++++|+.
T Consensus 155 t~~e~I~~~l~~---------------~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 155 TNLEDIIAELEQ---------------EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred cCHHHHHHHHHh---------------cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 467777777665 2489999999988888732 12 2457899999999999999
Q ss_pred CCCChH
Q 005009 259 GRLGGI 264 (719)
Q Consensus 259 ~~~g~i 264 (719)
.+.|.|
T Consensus 220 TKeG~I 225 (456)
T COG1066 220 TKEGAI 225 (456)
T ss_pred cccccc
Confidence 556655
No 473
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.92 E-value=2.8 Score=47.44 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a---~-~~g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVA---L-REGKPVLFFS 230 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCcEEEEE
Confidence 34888889999999999999996652 2 5689999995
No 474
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=90.73 E-value=0.32 Score=54.09 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+++.+-|+|. +|+|||++...|++.|. ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 5778999996 99999999999999994 88999999994
No 475
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.69 E-value=0.8 Score=48.09 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=30.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++|.|..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a---~-~~~~~vly~S 55 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAA---L-NGGYPVLYFS 55 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH---H-TTSSEEEEEE
T ss_pred cEEEEEecccCCchHHHHHHHHHHH---H-hcCCeEEEEc
Confidence 4888999999999999999999884 2 3479999997
No 476
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=90.59 E-value=3.5 Score=46.45 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
+...+|.+.|+++.| ++.|.+ -|+|+..==+.|-+. |+|+..+|. ...+++....|-||.--
T Consensus 109 ~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~-------------~~R~~~LIP~SAHGTNP 171 (496)
T COG1003 109 ELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE-------------GHRNICLIPDSAHGTNP 171 (496)
T ss_pred HHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCC-------------CcCcEEEeeccccCCCh
Confidence 445689999999988 566655 478998888888888 888877764 24578888999999766
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
.+.++.|- ..+.++. +.+... + +
T Consensus 172 ASAam~G~------------------------------~VV~V~~---------------~~~G~V-------D-----l 194 (496)
T COG1003 172 ASAAMAGF------------------------------KVVVVKC---------------DENGNV-------D-----L 194 (496)
T ss_pred hhHhhcCc------------------------------eEEEEec---------------CCCCCc-------c-----H
Confidence 66665542 1222221 000000 1 3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEecc----ccCccccCccc-cc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVET-TA 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEV----qTGfGRtG~~~-a~ 675 (719)
+.|+..+. +++||+++- | +.-|+.. +=.+++.++.+++|..|..|=. +-|.-|-|.++ -.
T Consensus 195 ddLk~k~~--------~~~AalMiTnP---sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 195 DDLRAKAE--------DNLAALMITNP---STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred HHHHHHhc--------cceeEEEeccC---cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 55655443 678877765 5 3445532 3356777777999999999964 55777888753 33
Q ss_pred cccCCCcceeeehhccCCCccch-heeEeCHHHHhhh
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPL-AATLATNAVFDSF 711 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Pl-savl~~~~i~~~~ 711 (719)
.|+++.- ||+=.=||| =|- |-|.+++++...+
T Consensus 261 ~HlNLHK---TF~iPHGGG-GPG~GPvgVk~~L~pfL 293 (496)
T COG1003 261 VHLNLHK---TFCIPHGGG-GPGAGPVGVKAHLAPFL 293 (496)
T ss_pred EEeeccc---ccccCCCCC-CCCCCceehHhhccccC
Confidence 3444321 555555554 243 3455666666554
No 477
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=90.54 E-value=0.79 Score=51.35 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccCCCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLTGGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~LggG~~ 696 (719)
+.++.-| +.=.|.+. +.+-+++|.++|++|++++|.||+..-+ .....+ .... ...+.++ +|+|....| +
T Consensus 182 ~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pG-l 255 (416)
T PRK09440 182 AICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATP-LWNPNIILCMSLSKLGLPG-V 255 (416)
T ss_pred EEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCc-cccCCeEEEecccccCCCc-c
Confidence 4455566 45567765 7888999999999999999999998421 111000 0000 0122333 799975568 7
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
-+|.+++++++++.+.
T Consensus 256 RiG~~i~~~~l~~~~~ 271 (416)
T PRK09440 256 RCGIVIADEEIIEALS 271 (416)
T ss_pred eEEEEeCCHHHHHHHH
Confidence 8999999999887764
No 478
>PRK09165 replicative DNA helicase; Provisional
Probab=90.35 E-value=2.2 Score=49.45 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCC---CC---------chhHHHHhhcCCCEEEEEc
Q 005009 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SG---------SLQCDLYRPFRLPGILVGD 258 (719)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~---~~---------~~~~dla~~l~~pvilV~~ 258 (719)
.+..+.|+..+.++.+. .+.++|||--.+-+..+.. .. ...-.+|+.+++|||+++.
T Consensus 323 ~~ti~~i~~~ir~l~~~-----------~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQ 391 (497)
T PRK09165 323 ALSISQLRARARRLKRQ-----------HGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQ 391 (497)
T ss_pred CCCHHHHHHHHHHHHHh-----------cCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 35778888888776543 3589999998775544432 11 1235678888999988886
No 479
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=90.11 E-value=4.3 Score=45.40 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=55.0
Q ss_pred CCcEEEEE-EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccc-cc---cCCCccee----
Q 005009 617 SGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTA-DL---LGCVPDIA---- 685 (719)
Q Consensus 617 ~~~iAAvI-vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~-e~---~gv~PDIv---- 685 (719)
.-+|.+|| +-| +.-=|... +++-|..|...+.+++|.+|.|||..| |+.. +|-.. +. -...||-+
T Consensus 224 ~~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivy 299 (471)
T KOG0256|consen 224 GLKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKS-EFRSVLEVRKDPHLDPDRVHIVY 299 (471)
T ss_pred CCceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCcc-CceEHHHHhhccccCCCcEEEEE
Confidence 44676554 555 33335544 688899999999999999999999986 5444 22111 11 11267743
Q ss_pred eehhccC-CCccchheeEeCH
Q 005009 686 CYGKLLT-GGVIPLAATLATN 705 (719)
Q Consensus 686 tlgK~Lg-gG~~Plsavl~~~ 705 (719)
-++|=+| -| +-.|++-...
T Consensus 300 slSKD~GlpG-fRvGviYS~n 319 (471)
T KOG0256|consen 300 SLSKDFGLPG-FRVGVIYSNN 319 (471)
T ss_pred EeccccCCCc-eEEEEEEecC
Confidence 6899998 47 5777665544
No 480
>PHA02542 41 41 helicase; Provisional
Probab=90.00 E-value=3.4 Score=47.65 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-++.... +.|++|.+|=
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a-----~~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYL-----QQGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 34888899999999999999998873 6699999985
No 481
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=89.99 E-value=1.9 Score=47.52 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=49.0
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG 694 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG 694 (719)
..-|+.+-.|.. .|+..+ ++++.+|+++|+|=||+ +| +.-.-.+.+ |++++ -|++|
T Consensus 131 ~~~v~~th~ETs----tGv~~~---------~l~~~~~~l~iVDavss-~g--~~~id~~~~----d~~~~ssqK~lg-- 188 (349)
T TIGR01364 131 AAYVHYCANETI----HGVEFR---------ELPDVKNAPLVADMSSN-IL--SRPIDVSKF----GLIYAGAQKNIG-- 188 (349)
T ss_pred CCEEEEcCCCCc----ccEecc---------eecccCCCeEEEEcccc-cc--CccCCHHHc----cEEEEecccccC--
Confidence 345667777775 345432 77888999999999997 32 222333333 46654 48884
Q ss_pred ccc-hheeEeCHHHHhhhcC
Q 005009 695 VIP-LAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~P-lsavl~~~~i~~~~~~ 713 (719)
-| +|.+.+++++.+.+..
T Consensus 189 -P~Glg~l~~s~~~~~~~~~ 207 (349)
T TIGR01364 189 -PAGLTVVIVRKDLLGRASR 207 (349)
T ss_pred -CCceEEEEECHHHHhhccc
Confidence 34 7899999999876543
No 482
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.85 E-value=0.47 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|+ +||||||++..|++.+
T Consensus 1 vI~I~G~-~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGP-PGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECC-CCCCHHHHHHHHHHHH
Confidence 3789999 9999999999999988
No 483
>PRK08006 replicative DNA helicase; Provisional
Probab=89.80 E-value=2.6 Score=48.61 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|..+++|||++++-|+.... . ++|++|.+|=
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a---~-~~g~~V~~fS 260 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAA---M-LQDKPVLIFS 260 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH---H-hcCCeEEEEe
Confidence 45899999999999999999987762 2 4688999995
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.77 E-value=5 Score=41.26 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=27.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~---~-~~g~~vly~s 49 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIA---K-KQGKPVLFFS 49 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCceEEEe
Confidence 566666799999999999877764 2 3499999987
No 485
>PRK06893 DNA replication initiation factor; Validated
Probab=89.55 E-value=0.43 Score=49.43 Aligned_cols=36 Identities=28% Similarity=0.580 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+.++|+|. +|+|||+++.++++.+. ++|.++.|+..
T Consensus 40 ~~l~l~G~-~G~GKThL~~ai~~~~~-----~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGG-KSSGKSHLLKAVSNHYL-----LNQRTAIYIPL 75 (229)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEeeH
Confidence 56899998 99999999999999984 66888888773
No 486
>PRK06526 transposase; Provisional
Probab=89.43 E-value=0.3 Score=51.63 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++.+|+..+. ++|++|.|+.
T Consensus 98 ~~nlll~Gp-~GtGKThLa~al~~~a~-----~~g~~v~f~t 133 (254)
T PRK06526 98 KENVVFLGP-PGTGKTHLAIGLGIRAC-----QAGHRVLFAT 133 (254)
T ss_pred CceEEEEeC-CCCchHHHHHHHHHHHH-----HCCCchhhhh
Confidence 468999996 89999999999999884 6788887743
No 487
>PRK08727 hypothetical protein; Validated
Probab=89.41 E-value=0.46 Score=49.32 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. +|+|||.++.+++..+. ++|+++.|+-
T Consensus 42 ~~l~l~G~-~G~GKThL~~a~~~~~~-----~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGP-AGTGKTHLALALCAAAE-----QAGRSSAYLP 76 (233)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 34999998 99999999999999984 6788998885
No 488
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.40 E-value=11 Score=42.86 Aligned_cols=85 Identities=12% Similarity=0.149 Sum_probs=47.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhc----CCCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCC-CC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHG-LV 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~ 292 (719)
++|+++|.++| +++-.. ..+-++.... ...++||.+...+ .+.+++..+ ..+.+-|+|+-+.+ ..
T Consensus 269 ~~d~VLIDTaG--rsqrd~-~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f-----~~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 269 GKHMVLIDTVG--MSQRDQ-MLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY-----QGHGIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEecCCC--CCcchH-HHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh-----cCCCCCEEEEEeeeCCC
Confidence 38999999986 333221 2223333222 2347899886533 344444333 35778999999983 23
Q ss_pred CHHHHHHhhcC-CCcEEecCC
Q 005009 293 NEVPLMSYLRN-RVPVLVLPP 312 (719)
Q Consensus 293 ~~~~l~~~~~~-~~pvlglP~ 312 (719)
..-.+.+..-+ ++|+.-+-.
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt~ 361 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVTN 361 (420)
T ss_pred CccHHHHHHHHhCCCEEEEEC
Confidence 33333332222 889876533
No 489
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=89.31 E-value=0.87 Score=50.93 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=47.0
Q ss_pred CCCchhHHHHHHHHhcccCCCCC---CCCC-CCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 7 HHYPDHHRRILLRLFHHSTFHPQ---PLDL-PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.-|.+++-+.|-..+......+. +... -.+++.|.|++.-.|||||++|..|..+|. ++|+||...=
T Consensus 70 r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 140 (387)
T TIGR03453 70 RSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLA-----LRGYRVLAID 140 (387)
T ss_pred eeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 35777777766666654222111 1111 134678999999999999999999999994 7799997764
No 490
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=89.27 E-value=0.54 Score=41.83 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.|.+...|+|||++++.|+..|. ++|.+|..+-
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-----~~~~~vl~~d 35 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-----RRGKRVLLID 35 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678899999999999999999994 6788887775
No 491
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.12 E-value=0.44 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++++|. +|+|||+++.+++..+. ++|++|.|+-
T Consensus 184 ~~Lll~G~-~GtGKThLa~aIa~~l~-----~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGN-TGTGKTFLSNCIAKELL-----DRGKSVIYRT 218 (329)
T ss_pred CcEEEECC-CCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 57999995 89999999999999995 7799998877
No 492
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.05 E-value=0.48 Score=51.42 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++++|. +|+|||+++.+|+..+. ++|++|.++.
T Consensus 156 ~~gl~L~G~-~G~GKThLa~Aia~~l~-----~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGD-FGVGKSYLLAAIANELA-----KKGVSSTLLH 191 (306)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCEEEEE
Confidence 468999996 89999999999999994 7899998887
No 493
>PRK12377 putative replication protein; Provisional
Probab=88.82 E-value=0.54 Score=49.56 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++++|. +|+|||+++.+|+..+. ++|++|.++.
T Consensus 102 ~~l~l~G~-~GtGKThLa~AIa~~l~-----~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGK-PGTGKNHLAAAIGNRLL-----AKGRSVIVVT 136 (248)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEEE
Confidence 57999996 89999999999999995 6789987765
No 494
>PRK05748 replicative DNA helicase; Provisional
Probab=88.80 E-value=2.8 Score=47.87 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a---~-~~g~~v~~fS 239 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVA---T-KTDKNVAIFS 239 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 34888888899999999999987652 2 5689999985
No 495
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=88.78 E-value=1.6 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|.+.|+|- -|+|||++-..|++.. .+|.|++...
T Consensus 1 Pv~ii~Gf-LGsGKTTli~~ll~~~------~~~~~~~vI~ 34 (178)
T PF02492_consen 1 PVIIITGF-LGSGKTTLINHLLKRN------RQGERVAVIV 34 (178)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHH------TTTS-EEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHh------cCCceeEEEE
Confidence 46788887 8999999999999733 6799999987
No 496
>PRK10037 cell division protein; Provisional
Probab=88.68 E-value=0.59 Score=48.87 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|-|.+.-.|||||+++..|+.+|. ++|+||...=
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQ-----MLGENVLVID 37 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 568999999999999999999999994 8899987764
No 497
>PRK06904 replicative DNA helicase; Validated
Probab=88.58 E-value=4 Score=47.10 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|.|..+|+|||++++-+++... . +.|.+|.+|=
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a---~-~~g~~Vl~fS 257 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAA---M-ASEKPVLVFS 257 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHH---H-hcCCeEEEEe
Confidence 45899999999999999999988652 1 4588999985
No 498
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=88.38 E-value=0.55 Score=44.79 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|.+-|+|+..|+|||++++.|+..|. ++|.+|.++=
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la-----~~~~~Vllid 36 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALA-----RKGKKVLLID 36 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHH-----HTTT-EEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-----hcCCCeEEEE
Confidence 36889999999999999999999995 7788888775
No 499
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.32 E-value=1.2 Score=50.12 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|.=..=+.|++++......+ --.+++.|-|+..-.|||||++|..|..+|. .+|+||...=
T Consensus 81 ~ftL~ei~~lr~~~~~~~~r~----~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA-----~~G~rVLlID 142 (388)
T PRK13705 81 GYTIEQINHMRDVFGTRLRRA----EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLA-----LKGLRVLLVE 142 (388)
T ss_pred CcCHHHHHHHHHhhccccccc----CCCCCeEEEEECCCCCchHHHHHHHHHHHHH-----hcCCCeEEEc
Confidence 466555566666665422211 1134678999999999999999999999994 7899997663
No 500
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=88.31 E-value=0.62 Score=45.65 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|+|||. +|+|||+++..|-+.|. ++|.++.++-
T Consensus 4 vIwltGl-sGsGKtTlA~~L~~~L~-----~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGL-SGSGKTTLARALERRLF-----ARGIKVYLLD 37 (156)
T ss_dssp EEEEESS-TTSSHHHHHHHHHHHHH-----HTTS-EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEec
Confidence 5899998 89999999999999994 7899998886
Done!